Multiple sequence alignment - TraesCS3B01G512000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G512000 chr3B 100.000 4416 0 0 1 4416 755572792 755577207 0.000000e+00 8155.0
1 TraesCS3B01G512000 chr3B 92.463 544 26 9 2978 3508 755771317 755771858 0.000000e+00 763.0
2 TraesCS3B01G512000 chr3B 80.369 1085 145 35 3107 4145 756082110 756081048 0.000000e+00 761.0
3 TraesCS3B01G512000 chr3B 88.454 511 33 12 2432 2927 754720155 754720654 1.060000e-165 593.0
4 TraesCS3B01G512000 chr3B 86.195 565 44 13 2432 2978 755605233 755605781 8.230000e-162 580.0
5 TraesCS3B01G512000 chr3B 86.493 422 37 12 2432 2840 754771031 754771445 3.130000e-121 446.0
6 TraesCS3B01G512000 chr3B 91.608 286 22 2 852 1136 755604071 755604355 1.150000e-105 394.0
7 TraesCS3B01G512000 chr3B 89.310 290 21 5 852 1136 754718145 754718429 5.430000e-94 355.0
8 TraesCS3B01G512000 chr3B 86.207 348 25 11 802 1137 755707934 755708270 5.430000e-94 355.0
9 TraesCS3B01G512000 chr3B 83.377 379 41 4 2005 2363 754719199 754719575 9.160000e-87 331.0
10 TraesCS3B01G512000 chr3B 81.471 340 56 7 276 610 747679798 747679461 5.630000e-69 272.0
11 TraesCS3B01G512000 chr3B 86.170 188 26 0 1313 1500 755604592 755604779 2.080000e-48 204.0
12 TraesCS3B01G512000 chr3B 83.556 225 26 7 3531 3752 755722145 755722361 2.690000e-47 200.0
13 TraesCS3B01G512000 chr3B 86.503 163 20 2 446 608 766887924 766888084 1.260000e-40 178.0
14 TraesCS3B01G512000 chr3B 86.093 151 17 3 459 607 766857323 766857471 4.570000e-35 159.0
15 TraesCS3B01G512000 chr3B 84.091 88 9 4 652 736 755769400 755769485 3.660000e-11 80.5
16 TraesCS3B01G512000 chr3A 95.097 1448 51 10 2973 4416 700893642 700895073 0.000000e+00 2263.0
17 TraesCS3B01G512000 chr3A 91.377 893 43 14 606 1488 700890870 700891738 0.000000e+00 1192.0
18 TraesCS3B01G512000 chr3A 82.477 1187 122 33 3167 4304 700911358 700912507 0.000000e+00 961.0
19 TraesCS3B01G512000 chr3A 86.515 749 66 18 2978 3716 701123832 701124555 0.000000e+00 791.0
20 TraesCS3B01G512000 chr3A 84.494 761 56 27 2981 3716 700953874 700954597 0.000000e+00 695.0
21 TraesCS3B01G512000 chr3A 91.132 530 20 12 2475 2978 700893086 700893614 0.000000e+00 693.0
22 TraesCS3B01G512000 chr3A 82.216 776 96 21 2973 3746 700945563 700946298 8.060000e-177 630.0
23 TraesCS3B01G512000 chr3A 81.726 788 93 22 3114 3863 701140489 701141263 1.050000e-170 610.0
24 TraesCS3B01G512000 chr3A 92.019 426 29 3 2557 2978 700908741 700909165 1.060000e-165 593.0
25 TraesCS3B01G512000 chr3A 85.740 561 48 13 2432 2978 700953296 700953838 8.290000e-157 564.0
26 TraesCS3B01G512000 chr3A 93.496 369 19 3 1994 2358 700891921 700892288 1.080000e-150 544.0
27 TraesCS3B01G512000 chr3A 88.482 382 30 7 2432 2804 701123413 701123789 2.420000e-122 449.0
28 TraesCS3B01G512000 chr3A 87.200 375 26 14 859 1213 700952164 700952536 1.480000e-109 407.0
29 TraesCS3B01G512000 chr3A 82.851 449 31 17 797 1215 701122087 701122519 1.170000e-95 361.0
30 TraesCS3B01G512000 chr3A 87.413 286 22 6 852 1136 700959237 700959509 2.560000e-82 316.0
31 TraesCS3B01G512000 chr3A 94.330 194 7 1 1727 1916 700891735 700891928 1.200000e-75 294.0
32 TraesCS3B01G512000 chr3A 87.097 186 24 0 4099 4284 701142303 701142488 1.240000e-50 211.0
33 TraesCS3B01G512000 chr3A 85.638 188 27 0 1313 1500 700952653 700952840 9.690000e-47 198.0
34 TraesCS3B01G512000 chr3A 85.629 167 20 2 2106 2269 700960417 700960582 5.870000e-39 172.0
35 TraesCS3B01G512000 chr3A 94.203 69 4 0 2360 2428 700892266 700892334 6.040000e-19 106.0
36 TraesCS3B01G512000 chr3D 85.258 1221 91 42 2432 3609 566300637 566299463 0.000000e+00 1175.0
37 TraesCS3B01G512000 chr3D 90.826 872 43 15 622 1488 566424051 566423212 0.000000e+00 1133.0
38 TraesCS3B01G512000 chr3D 95.833 552 18 3 2430 2978 566423153 566422604 0.000000e+00 887.0
39 TraesCS3B01G512000 chr3D 90.708 678 33 15 2976 3640 566422573 566421913 0.000000e+00 876.0
40 TraesCS3B01G512000 chr3D 90.196 510 29 10 2432 2927 566131855 566131353 0.000000e+00 645.0
41 TraesCS3B01G512000 chr3D 84.925 398 27 12 840 1215 566103765 566103379 5.390000e-99 372.0
42 TraesCS3B01G512000 chr3D 87.372 293 21 13 852 1136 566138681 566138397 5.510000e-84 322.0
43 TraesCS3B01G512000 chr3D 87.456 287 18 10 859 1136 566394931 566394654 9.220000e-82 315.0
44 TraesCS3B01G512000 chr3D 87.308 260 29 4 2106 2363 566132689 566132432 1.200000e-75 294.0
45 TraesCS3B01G512000 chr3D 77.273 308 44 13 1373 1659 566138115 566137813 1.640000e-34 158.0
46 TraesCS3B01G512000 chr3D 85.333 150 12 5 3489 3631 566129192 566129046 3.560000e-31 147.0
47 TraesCS3B01G512000 chr3D 93.333 60 4 0 1727 1786 566423215 566423156 6.080000e-14 89.8
48 TraesCS3B01G512000 chr3D 91.935 62 5 0 2005 2066 566137630 566137569 2.190000e-13 87.9
49 TraesCS3B01G512000 chrUn 80.369 1085 145 35 3107 4145 408040744 408041806 0.000000e+00 761.0
50 TraesCS3B01G512000 chr4A 85.923 547 53 17 36 574 513322589 513323119 2.980000e-156 562.0
51 TraesCS3B01G512000 chr4A 83.912 547 63 18 36 574 17286572 17287101 2.370000e-137 499.0
52 TraesCS3B01G512000 chr5B 85.278 557 51 22 36 581 704254531 704253995 3.000000e-151 545.0
53 TraesCS3B01G512000 chr5B 83.942 548 67 13 36 576 670214173 670213640 5.100000e-139 505.0
54 TraesCS3B01G512000 chr5B 86.301 146 18 2 463 607 586776900 586776756 1.640000e-34 158.0
55 TraesCS3B01G512000 chr5B 85.417 96 12 2 479 573 622339615 622339709 1.010000e-16 99.0
56 TraesCS3B01G512000 chr5B 83.333 102 15 2 478 578 497371978 497372078 4.700000e-15 93.5
57 TraesCS3B01G512000 chr5A 85.192 547 57 17 36 574 653884399 653883869 1.400000e-149 540.0
58 TraesCS3B01G512000 chr5A 91.589 107 9 0 1895 2001 677015 676909 9.900000e-32 148.0
59 TraesCS3B01G512000 chr2B 84.919 557 55 19 36 581 776840108 776840646 1.810000e-148 536.0
60 TraesCS3B01G512000 chr2B 89.041 365 31 6 36 394 776833602 776833963 1.130000e-120 444.0
61 TraesCS3B01G512000 chr2B 95.833 96 2 2 1914 2009 653585434 653585341 2.130000e-33 154.0
62 TraesCS3B01G512000 chr2B 80.982 163 19 11 287 443 128012504 128012348 7.760000e-23 119.0
63 TraesCS3B01G512000 chr2A 84.461 547 59 18 36 574 654718284 654717756 2.350000e-142 516.0
64 TraesCS3B01G512000 chr2A 90.435 115 8 3 1901 2012 437965394 437965508 9.900000e-32 148.0
65 TraesCS3B01G512000 chr7A 82.416 563 58 26 36 574 644003528 644004073 1.870000e-123 453.0
66 TraesCS3B01G512000 chr7A 96.809 94 2 1 1914 2007 608875110 608875202 5.910000e-34 156.0
67 TraesCS3B01G512000 chr6B 90.000 250 25 0 36 285 18681545 18681794 1.530000e-84 324.0
68 TraesCS3B01G512000 chr6B 82.731 249 28 8 330 576 45756433 45756668 1.610000e-49 207.0
69 TraesCS3B01G512000 chr6B 79.344 305 44 13 277 576 288139784 288140074 3.480000e-46 196.0
70 TraesCS3B01G512000 chr6B 94.059 101 3 3 1904 2003 27938413 27938511 2.750000e-32 150.0
71 TraesCS3B01G512000 chr1B 86.755 151 20 0 457 607 566725521 566725671 7.600000e-38 169.0
72 TraesCS3B01G512000 chr1B 86.755 151 20 0 457 607 566764450 566764600 7.600000e-38 169.0
73 TraesCS3B01G512000 chr1B 92.661 109 4 3 1900 2008 618002450 618002554 2.130000e-33 154.0
74 TraesCS3B01G512000 chr1B 95.833 96 3 1 1912 2007 618002551 618002457 2.130000e-33 154.0
75 TraesCS3B01G512000 chr1B 94.845 97 5 0 1913 2009 66942102 66942198 7.650000e-33 152.0
76 TraesCS3B01G512000 chr1B 82.249 169 17 12 280 441 89518980 89519142 2.770000e-27 134.0
77 TraesCS3B01G512000 chr1B 80.000 100 17 3 478 576 643262247 643262344 2.200000e-08 71.3
78 TraesCS3B01G512000 chr1D 78.599 257 38 11 317 569 250204059 250204302 2.130000e-33 154.0
79 TraesCS3B01G512000 chr4D 93.137 102 5 2 1908 2009 507164790 507164691 9.900000e-32 148.0
80 TraesCS3B01G512000 chr5D 75.920 299 42 22 287 576 370304562 370304839 4.640000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G512000 chr3B 755572792 755577207 4415 False 8155.000000 8155 100.000000 1 4416 1 chr3B.!!$F2 4415
1 TraesCS3B01G512000 chr3B 756081048 756082110 1062 True 761.000000 761 80.369000 3107 4145 1 chr3B.!!$R2 1038
2 TraesCS3B01G512000 chr3B 754718145 754720654 2509 False 426.333333 593 87.047000 852 2927 3 chr3B.!!$F7 2075
3 TraesCS3B01G512000 chr3B 755769400 755771858 2458 False 421.750000 763 88.277000 652 3508 2 chr3B.!!$F9 2856
4 TraesCS3B01G512000 chr3B 755604071 755605781 1710 False 392.666667 580 87.991000 852 2978 3 chr3B.!!$F8 2126
5 TraesCS3B01G512000 chr3A 700890870 700895073 4203 False 848.666667 2263 93.272500 606 4416 6 chr3A.!!$F2 3810
6 TraesCS3B01G512000 chr3A 700908741 700912507 3766 False 777.000000 961 87.248000 2557 4304 2 chr3A.!!$F3 1747
7 TraesCS3B01G512000 chr3A 700945563 700946298 735 False 630.000000 630 82.216000 2973 3746 1 chr3A.!!$F1 773
8 TraesCS3B01G512000 chr3A 701122087 701124555 2468 False 533.666667 791 85.949333 797 3716 3 chr3A.!!$F6 2919
9 TraesCS3B01G512000 chr3A 700952164 700954597 2433 False 466.000000 695 85.768000 859 3716 4 chr3A.!!$F4 2857
10 TraesCS3B01G512000 chr3A 701140489 701142488 1999 False 410.500000 610 84.411500 3114 4284 2 chr3A.!!$F7 1170
11 TraesCS3B01G512000 chr3A 700959237 700960582 1345 False 244.000000 316 86.521000 852 2269 2 chr3A.!!$F5 1417
12 TraesCS3B01G512000 chr3D 566299463 566300637 1174 True 1175.000000 1175 85.258000 2432 3609 1 chr3D.!!$R2 1177
13 TraesCS3B01G512000 chr3D 566421913 566424051 2138 True 746.450000 1133 92.675000 622 3640 4 chr3D.!!$R6 3018
14 TraesCS3B01G512000 chr3D 566129046 566132689 3643 True 362.000000 645 87.612333 2106 3631 3 chr3D.!!$R4 1525
15 TraesCS3B01G512000 chrUn 408040744 408041806 1062 False 761.000000 761 80.369000 3107 4145 1 chrUn.!!$F1 1038
16 TraesCS3B01G512000 chr4A 513322589 513323119 530 False 562.000000 562 85.923000 36 574 1 chr4A.!!$F2 538
17 TraesCS3B01G512000 chr4A 17286572 17287101 529 False 499.000000 499 83.912000 36 574 1 chr4A.!!$F1 538
18 TraesCS3B01G512000 chr5B 704253995 704254531 536 True 545.000000 545 85.278000 36 581 1 chr5B.!!$R3 545
19 TraesCS3B01G512000 chr5B 670213640 670214173 533 True 505.000000 505 83.942000 36 576 1 chr5B.!!$R2 540
20 TraesCS3B01G512000 chr5A 653883869 653884399 530 True 540.000000 540 85.192000 36 574 1 chr5A.!!$R2 538
21 TraesCS3B01G512000 chr2B 776840108 776840646 538 False 536.000000 536 84.919000 36 581 1 chr2B.!!$F2 545
22 TraesCS3B01G512000 chr2A 654717756 654718284 528 True 516.000000 516 84.461000 36 574 1 chr2A.!!$R1 538
23 TraesCS3B01G512000 chr7A 644003528 644004073 545 False 453.000000 453 82.416000 36 574 1 chr7A.!!$F2 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 573 0.028505 CAATCAAGCAAGCCGATCCG 59.971 55.000 0.00 0.0 0.00 4.18 F
593 622 0.035458 CCAGAAGTTTGGAGCGGTCT 59.965 55.000 15.18 0.0 40.87 3.85 F
595 624 0.038159 AGAAGTTTGGAGCGGTCTCG 60.038 55.000 15.18 0.0 40.26 4.04 F
597 626 0.106149 AAGTTTGGAGCGGTCTCGTT 59.894 50.000 15.18 0.0 40.26 3.85 F
797 833 0.393537 CAAGCACCACCTCTCCCATC 60.394 60.000 0.00 0.0 0.00 3.51 F
798 834 0.842030 AAGCACCACCTCTCCCATCA 60.842 55.000 0.00 0.0 0.00 3.07 F
1646 2334 1.067060 GTGCTTGGAAGTTGGAACCAC 59.933 52.381 0.00 0.0 33.20 4.16 F
2428 3169 1.962412 TTAAAATGTTGCAGCTCGCG 58.038 45.000 0.00 0.0 46.97 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2363 3104 1.002888 AGGGACACTGCTGACAATCAG 59.997 52.381 1.29 1.29 46.90 2.90 R
2364 3105 1.059098 AGGGACACTGCTGACAATCA 58.941 50.000 0.00 0.00 0.00 2.57 R
2367 3108 1.211703 TCAAAGGGACACTGCTGACAA 59.788 47.619 0.00 0.00 0.00 3.18 R
2428 3169 1.334419 GCACACAGTCAAGACATGCAC 60.334 52.381 2.72 0.00 32.31 4.57 R
2473 4444 4.397103 TCTCAATGGCATGAACTTGATGTC 59.603 41.667 0.00 0.00 0.00 3.06 R
2760 4747 7.930865 AGCTCATGGACAATAGAAGAGATAAAC 59.069 37.037 0.00 0.00 0.00 2.01 R
3292 8946 1.135139 GCCAGCTTCGAGTATGTCTCA 59.865 52.381 0.00 0.00 42.88 3.27 R
4183 10792 1.257743 AGCTCACCTCGCTAGACAAA 58.742 50.000 0.00 0.00 35.63 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.990479 GGTGAACCCGAGGCAGAT 59.010 61.111 0.00 0.00 0.00 2.90
18 19 1.299976 GGTGAACCCGAGGCAGATT 59.700 57.895 0.00 0.00 0.00 2.40
19 20 1.026718 GGTGAACCCGAGGCAGATTG 61.027 60.000 0.00 0.00 0.00 2.67
20 21 0.036388 GTGAACCCGAGGCAGATTGA 60.036 55.000 0.00 0.00 0.00 2.57
21 22 0.911769 TGAACCCGAGGCAGATTGAT 59.088 50.000 0.00 0.00 0.00 2.57
22 23 1.303309 GAACCCGAGGCAGATTGATG 58.697 55.000 0.00 0.00 0.00 3.07
23 24 0.911769 AACCCGAGGCAGATTGATGA 59.088 50.000 0.00 0.00 0.00 2.92
24 25 1.135094 ACCCGAGGCAGATTGATGAT 58.865 50.000 0.00 0.00 0.00 2.45
25 26 1.202734 ACCCGAGGCAGATTGATGATG 60.203 52.381 0.00 0.00 0.00 3.07
26 27 1.071228 CCCGAGGCAGATTGATGATGA 59.929 52.381 0.00 0.00 0.00 2.92
27 28 2.414806 CCGAGGCAGATTGATGATGAG 58.585 52.381 0.00 0.00 0.00 2.90
28 29 2.414806 CGAGGCAGATTGATGATGAGG 58.585 52.381 0.00 0.00 0.00 3.86
29 30 2.036862 CGAGGCAGATTGATGATGAGGA 59.963 50.000 0.00 0.00 0.00 3.71
30 31 3.493873 CGAGGCAGATTGATGATGAGGAA 60.494 47.826 0.00 0.00 0.00 3.36
31 32 3.814283 GAGGCAGATTGATGATGAGGAAC 59.186 47.826 0.00 0.00 0.00 3.62
32 33 3.201487 AGGCAGATTGATGATGAGGAACA 59.799 43.478 0.00 0.00 0.00 3.18
33 34 3.949754 GGCAGATTGATGATGAGGAACAA 59.050 43.478 0.00 0.00 0.00 2.83
34 35 4.036498 GGCAGATTGATGATGAGGAACAAG 59.964 45.833 0.00 0.00 0.00 3.16
120 121 1.550130 CCACCGAAACCCTAGCAGGA 61.550 60.000 4.00 0.00 37.67 3.86
164 165 2.989571 AGGAGGTGAGGAAAAGTGGATT 59.010 45.455 0.00 0.00 0.00 3.01
280 299 3.071206 GAGCGAGTGGGCAGGAGA 61.071 66.667 0.00 0.00 34.64 3.71
328 351 3.992641 TGAGTGCGGGGGAGAGGA 61.993 66.667 0.00 0.00 0.00 3.71
337 360 4.423209 GGGAGAGGAGGCCAGGGT 62.423 72.222 5.01 0.00 0.00 4.34
340 364 1.613630 GAGAGGAGGCCAGGGTTCA 60.614 63.158 5.01 0.00 0.00 3.18
351 375 2.214920 AGGGTTCACCACGGGAGTC 61.215 63.158 0.00 0.00 44.67 3.36
354 378 3.998672 TTCACCACGGGAGTCGGC 61.999 66.667 0.00 0.00 44.67 5.54
359 383 4.016706 CACGGGAGTCGGCCCTTT 62.017 66.667 0.00 0.00 46.44 3.11
360 384 3.246880 ACGGGAGTCGGCCCTTTT 61.247 61.111 0.00 0.00 46.44 2.27
361 385 1.914764 ACGGGAGTCGGCCCTTTTA 60.915 57.895 0.00 0.00 46.44 1.52
363 387 0.754472 CGGGAGTCGGCCCTTTTATA 59.246 55.000 0.00 0.00 46.44 0.98
364 388 1.539712 CGGGAGTCGGCCCTTTTATAC 60.540 57.143 0.00 0.00 46.44 1.47
365 389 1.202734 GGGAGTCGGCCCTTTTATACC 60.203 57.143 0.00 0.00 45.12 2.73
366 390 1.202734 GGAGTCGGCCCTTTTATACCC 60.203 57.143 0.00 0.00 0.00 3.69
369 393 0.982326 TCGGCCCTTTTATACCCCGT 60.982 55.000 0.00 0.00 37.17 5.28
371 395 0.256752 GGCCCTTTTATACCCCGTGT 59.743 55.000 0.00 0.00 0.00 4.49
372 396 1.385528 GCCCTTTTATACCCCGTGTG 58.614 55.000 0.00 0.00 0.00 3.82
374 398 2.635714 CCCTTTTATACCCCGTGTGAC 58.364 52.381 0.00 0.00 0.00 3.67
441 469 1.557443 GCACGGTCGAGGTGAAACTG 61.557 60.000 18.05 0.00 37.60 3.16
443 471 0.249322 ACGGTCGAGGTGAAACTGTG 60.249 55.000 0.00 0.00 36.74 3.66
445 473 1.557443 GGTCGAGGTGAAACTGTGCG 61.557 60.000 0.00 0.00 36.74 5.34
446 474 1.954146 TCGAGGTGAAACTGTGCGC 60.954 57.895 0.00 0.00 36.74 6.09
448 476 0.666274 CGAGGTGAAACTGTGCGCTA 60.666 55.000 9.73 0.00 36.74 4.26
461 489 3.935024 CGCTACAGGAGGGCTACA 58.065 61.111 0.00 0.00 0.00 2.74
462 490 1.736586 CGCTACAGGAGGGCTACAG 59.263 63.158 0.00 0.00 0.00 2.74
463 491 1.739338 CGCTACAGGAGGGCTACAGG 61.739 65.000 0.00 0.00 0.00 4.00
464 492 0.397254 GCTACAGGAGGGCTACAGGA 60.397 60.000 0.00 0.00 0.00 3.86
465 493 1.698506 CTACAGGAGGGCTACAGGAG 58.301 60.000 0.00 0.00 0.00 3.69
466 494 0.261991 TACAGGAGGGCTACAGGAGG 59.738 60.000 0.00 0.00 0.00 4.30
467 495 1.002274 CAGGAGGGCTACAGGAGGT 59.998 63.158 0.00 0.00 0.00 3.85
468 496 1.002274 AGGAGGGCTACAGGAGGTG 59.998 63.158 0.00 0.00 0.00 4.00
469 497 2.736826 GGAGGGCTACAGGAGGTGC 61.737 68.421 0.00 0.00 0.00 5.01
470 498 3.077556 AGGGCTACAGGAGGTGCG 61.078 66.667 0.00 0.00 0.00 5.34
471 499 3.075005 GGGCTACAGGAGGTGCGA 61.075 66.667 0.00 0.00 0.00 5.10
472 500 2.496817 GGCTACAGGAGGTGCGAG 59.503 66.667 0.00 0.00 0.00 5.03
473 501 2.352032 GGCTACAGGAGGTGCGAGT 61.352 63.158 0.00 0.00 0.00 4.18
474 502 1.139947 GCTACAGGAGGTGCGAGTC 59.860 63.158 0.00 0.00 0.00 3.36
475 503 1.316706 GCTACAGGAGGTGCGAGTCT 61.317 60.000 0.00 0.00 0.00 3.24
476 504 0.736053 CTACAGGAGGTGCGAGTCTC 59.264 60.000 0.00 0.00 0.00 3.36
536 565 2.533266 GCCGGAAATCAATCAAGCAAG 58.467 47.619 5.05 0.00 0.00 4.01
544 573 0.028505 CAATCAAGCAAGCCGATCCG 59.971 55.000 0.00 0.00 0.00 4.18
557 586 1.482621 CGATCCGACGGTCAGCAATG 61.483 60.000 14.79 0.00 0.00 2.82
576 605 1.078214 CCAAATCGCTGAGGAGCCA 60.078 57.895 0.00 0.00 42.91 4.75
581 610 0.975040 ATCGCTGAGGAGCCAGAAGT 60.975 55.000 0.00 0.00 42.91 3.01
582 611 1.188219 TCGCTGAGGAGCCAGAAGTT 61.188 55.000 0.00 0.00 42.91 2.66
583 612 0.321122 CGCTGAGGAGCCAGAAGTTT 60.321 55.000 0.00 0.00 42.91 2.66
584 613 1.163554 GCTGAGGAGCCAGAAGTTTG 58.836 55.000 0.00 0.00 39.57 2.93
585 614 1.818642 CTGAGGAGCCAGAAGTTTGG 58.181 55.000 0.00 1.09 41.35 3.28
586 615 1.349026 CTGAGGAGCCAGAAGTTTGGA 59.651 52.381 7.90 0.00 40.87 3.53
587 616 1.349026 TGAGGAGCCAGAAGTTTGGAG 59.651 52.381 7.90 0.00 40.87 3.86
588 617 0.037447 AGGAGCCAGAAGTTTGGAGC 59.963 55.000 7.90 0.00 40.87 4.70
589 618 1.301677 GGAGCCAGAAGTTTGGAGCG 61.302 60.000 7.90 0.00 40.87 5.03
590 619 1.301677 GAGCCAGAAGTTTGGAGCGG 61.302 60.000 7.90 0.00 40.87 5.52
591 620 1.600916 GCCAGAAGTTTGGAGCGGT 60.601 57.895 7.90 0.00 40.87 5.68
592 621 1.578206 GCCAGAAGTTTGGAGCGGTC 61.578 60.000 5.93 5.93 40.87 4.79
593 622 0.035458 CCAGAAGTTTGGAGCGGTCT 59.965 55.000 15.18 0.00 40.87 3.85
594 623 1.433534 CAGAAGTTTGGAGCGGTCTC 58.566 55.000 15.18 5.38 38.62 3.36
595 624 0.038159 AGAAGTTTGGAGCGGTCTCG 60.038 55.000 15.18 0.00 40.26 4.04
596 625 0.319641 GAAGTTTGGAGCGGTCTCGT 60.320 55.000 15.18 1.69 40.26 4.18
597 626 0.106149 AAGTTTGGAGCGGTCTCGTT 59.894 50.000 15.18 0.00 40.26 3.85
598 627 0.106149 AGTTTGGAGCGGTCTCGTTT 59.894 50.000 15.18 0.00 40.26 3.60
599 628 0.942252 GTTTGGAGCGGTCTCGTTTT 59.058 50.000 15.18 0.00 40.26 2.43
600 629 1.332686 GTTTGGAGCGGTCTCGTTTTT 59.667 47.619 15.18 0.00 40.26 1.94
639 668 1.896465 CCATTTTTAGGGGTTTGCGGA 59.104 47.619 0.00 0.00 0.00 5.54
714 743 0.482446 ATGTGGCCAAGGAAGGAACA 59.518 50.000 7.24 0.00 33.22 3.18
715 744 0.467290 TGTGGCCAAGGAAGGAACAC 60.467 55.000 7.24 0.00 38.07 3.32
736 772 0.393820 TACCGCGAAGTTTCCTGGTT 59.606 50.000 8.23 0.00 0.00 3.67
738 774 1.574702 CCGCGAAGTTTCCTGGTTCC 61.575 60.000 8.23 0.00 0.00 3.62
739 775 0.602905 CGCGAAGTTTCCTGGTTCCT 60.603 55.000 0.00 0.00 0.00 3.36
793 829 2.360475 GCCAAGCACCACCTCTCC 60.360 66.667 0.00 0.00 0.00 3.71
794 830 2.352805 CCAAGCACCACCTCTCCC 59.647 66.667 0.00 0.00 0.00 4.30
795 831 2.528818 CCAAGCACCACCTCTCCCA 61.529 63.158 0.00 0.00 0.00 4.37
796 832 1.687612 CAAGCACCACCTCTCCCAT 59.312 57.895 0.00 0.00 0.00 4.00
797 833 0.393537 CAAGCACCACCTCTCCCATC 60.394 60.000 0.00 0.00 0.00 3.51
798 834 0.842030 AAGCACCACCTCTCCCATCA 60.842 55.000 0.00 0.00 0.00 3.07
799 835 1.222936 GCACCACCTCTCCCATCAG 59.777 63.158 0.00 0.00 0.00 2.90
800 836 1.557269 GCACCACCTCTCCCATCAGT 61.557 60.000 0.00 0.00 0.00 3.41
905 964 1.739562 GAGCTAAGCGCACACAGCT 60.740 57.895 20.32 20.32 46.71 4.24
952 1025 2.871795 TAGCCAGGACTCCATCGGCA 62.872 60.000 19.89 7.96 45.47 5.69
968 1041 2.818132 CATCTCCGCCTCACCTCC 59.182 66.667 0.00 0.00 0.00 4.30
1105 1198 2.989639 CCATGGTCTCCGGCTTCA 59.010 61.111 2.57 0.00 0.00 3.02
1203 1351 4.208873 TGCGTTTTCTTGCAAATTCATGAC 59.791 37.500 0.00 0.00 38.34 3.06
1266 1570 5.618236 AGTTTTACTCTTAGGTTGGGTGAC 58.382 41.667 0.00 0.00 0.00 3.67
1371 2017 1.281867 CCTTCCAAGCAGGGTGATACA 59.718 52.381 0.00 0.00 38.24 2.29
1443 2094 9.267084 GATTCTGAATGTTCTACTAAATCTCCC 57.733 37.037 7.78 0.00 0.00 4.30
1452 2103 1.133792 ACTAAATCTCCCCGGCATTGG 60.134 52.381 0.00 0.00 0.00 3.16
1505 2166 3.747099 GCGACTGCAATGTACTTCAAT 57.253 42.857 0.00 0.00 42.15 2.57
1507 2168 5.216566 GCGACTGCAATGTACTTCAATTA 57.783 39.130 0.00 0.00 42.15 1.40
1508 2169 5.258622 GCGACTGCAATGTACTTCAATTAG 58.741 41.667 0.00 0.00 42.15 1.73
1510 2171 5.567138 ACTGCAATGTACTTCAATTAGGC 57.433 39.130 0.00 0.00 0.00 3.93
1516 2177 7.555914 TGCAATGTACTTCAATTAGGCTGATAA 59.444 33.333 0.00 0.00 0.00 1.75
1544 2205 8.587608 TGAAGAAACTGATGGATTAAAGCATTT 58.412 29.630 0.00 0.00 43.42 2.32
1566 2228 9.683069 CATTTTTATTGATACCTCAACTATGGC 57.317 33.333 0.00 0.00 43.92 4.40
1571 2233 4.441495 TTGATACCTCAACTATGGCGACAG 60.441 45.833 0.00 0.00 39.23 3.51
1588 2276 3.684305 CGACAGCCATCATTGTGTTCTTA 59.316 43.478 0.00 0.00 0.00 2.10
1592 2280 6.179756 ACAGCCATCATTGTGTTCTTATGTA 58.820 36.000 0.00 0.00 0.00 2.29
1646 2334 1.067060 GTGCTTGGAAGTTGGAACCAC 59.933 52.381 0.00 0.00 33.20 4.16
1659 2347 5.299279 AGTTGGAACCACTTCATACACAAAG 59.701 40.000 0.00 0.00 0.00 2.77
1661 2349 3.057526 GGAACCACTTCATACACAAAGGC 60.058 47.826 0.00 0.00 0.00 4.35
1662 2350 3.508845 ACCACTTCATACACAAAGGCT 57.491 42.857 0.00 0.00 0.00 4.58
1663 2351 4.634012 ACCACTTCATACACAAAGGCTA 57.366 40.909 0.00 0.00 0.00 3.93
1664 2352 4.579869 ACCACTTCATACACAAAGGCTAG 58.420 43.478 0.00 0.00 0.00 3.42
1667 2355 5.295292 CCACTTCATACACAAAGGCTAGATG 59.705 44.000 0.00 0.00 0.00 2.90
1668 2356 5.295292 CACTTCATACACAAAGGCTAGATGG 59.705 44.000 0.00 0.00 0.00 3.51
1670 2358 4.769688 TCATACACAAAGGCTAGATGGTG 58.230 43.478 0.00 0.00 0.00 4.17
1671 2359 4.225042 TCATACACAAAGGCTAGATGGTGT 59.775 41.667 3.49 3.49 41.76 4.16
1672 2360 3.508845 ACACAAAGGCTAGATGGTGTT 57.491 42.857 0.00 0.00 36.15 3.32
1673 2361 3.412386 ACACAAAGGCTAGATGGTGTTC 58.588 45.455 0.00 0.00 36.15 3.18
1674 2362 3.181445 ACACAAAGGCTAGATGGTGTTCA 60.181 43.478 0.00 0.00 36.15 3.18
1676 2364 3.073062 ACAAAGGCTAGATGGTGTTCAGT 59.927 43.478 0.00 0.00 0.00 3.41
1677 2365 3.340814 AAGGCTAGATGGTGTTCAGTG 57.659 47.619 0.00 0.00 0.00 3.66
1678 2366 2.260822 AGGCTAGATGGTGTTCAGTGT 58.739 47.619 0.00 0.00 0.00 3.55
1680 2368 2.263077 GCTAGATGGTGTTCAGTGTCG 58.737 52.381 0.00 0.00 0.00 4.35
1681 2369 2.094700 GCTAGATGGTGTTCAGTGTCGA 60.095 50.000 0.00 0.00 0.00 4.20
1682 2370 3.614150 GCTAGATGGTGTTCAGTGTCGAA 60.614 47.826 0.00 0.00 0.00 3.71
1683 2371 3.685139 AGATGGTGTTCAGTGTCGAAT 57.315 42.857 0.00 0.00 0.00 3.34
1685 2373 4.495422 AGATGGTGTTCAGTGTCGAATAC 58.505 43.478 0.00 0.00 36.56 1.89
1686 2374 4.220821 AGATGGTGTTCAGTGTCGAATACT 59.779 41.667 0.00 0.00 37.23 2.12
1687 2375 5.417894 AGATGGTGTTCAGTGTCGAATACTA 59.582 40.000 3.54 0.00 37.23 1.82
1688 2376 5.654603 TGGTGTTCAGTGTCGAATACTAT 57.345 39.130 3.54 0.00 37.23 2.12
1689 2377 6.762702 TGGTGTTCAGTGTCGAATACTATA 57.237 37.500 3.54 0.00 37.23 1.31
1690 2378 7.160547 TGGTGTTCAGTGTCGAATACTATAA 57.839 36.000 3.54 0.26 37.23 0.98
1691 2379 7.604549 TGGTGTTCAGTGTCGAATACTATAAA 58.395 34.615 3.54 0.00 37.23 1.40
1693 2381 9.095065 GGTGTTCAGTGTCGAATACTATAAATT 57.905 33.333 3.54 0.00 37.23 1.82
1713 2401 9.932207 ATAAATTTTTCTTCAGCATCATGACAA 57.068 25.926 0.00 0.00 0.00 3.18
1714 2402 8.665643 AAATTTTTCTTCAGCATCATGACAAA 57.334 26.923 0.00 0.00 0.00 2.83
1715 2403 8.665643 AATTTTTCTTCAGCATCATGACAAAA 57.334 26.923 0.00 0.00 0.00 2.44
1716 2404 8.665643 ATTTTTCTTCAGCATCATGACAAAAA 57.334 26.923 0.00 1.06 36.54 1.94
1808 2496 9.729281 TCCATCGTACATACACAAGTATCTATA 57.271 33.333 0.00 0.00 38.88 1.31
1905 2608 5.220739 CGGAATACCTTCAATGCTCTCAAAG 60.221 44.000 0.00 0.00 32.70 2.77
1912 2616 7.224297 ACCTTCAATGCTCTCAAAGTTAGTAA 58.776 34.615 0.00 0.00 0.00 2.24
1913 2617 7.173390 ACCTTCAATGCTCTCAAAGTTAGTAAC 59.827 37.037 4.78 4.78 0.00 2.50
1914 2618 7.389053 CCTTCAATGCTCTCAAAGTTAGTAACT 59.611 37.037 9.85 9.85 45.46 2.24
1917 2621 8.585881 TCAATGCTCTCAAAGTTAGTAACTACT 58.414 33.333 15.84 4.07 41.91 2.57
1918 2622 8.865001 CAATGCTCTCAAAGTTAGTAACTACTC 58.135 37.037 15.84 3.06 41.91 2.59
1919 2623 6.921914 TGCTCTCAAAGTTAGTAACTACTCC 58.078 40.000 15.84 2.85 41.91 3.85
1920 2624 6.071503 TGCTCTCAAAGTTAGTAACTACTCCC 60.072 42.308 15.84 3.29 41.91 4.30
1921 2625 6.153170 GCTCTCAAAGTTAGTAACTACTCCCT 59.847 42.308 15.84 0.00 41.91 4.20
1922 2626 7.629008 GCTCTCAAAGTTAGTAACTACTCCCTC 60.629 44.444 15.84 1.38 41.91 4.30
1923 2627 6.662663 TCTCAAAGTTAGTAACTACTCCCTCC 59.337 42.308 15.84 0.00 41.91 4.30
1924 2628 5.416952 TCAAAGTTAGTAACTACTCCCTCCG 59.583 44.000 15.84 0.00 41.91 4.63
1925 2629 4.582973 AGTTAGTAACTACTCCCTCCGT 57.417 45.455 14.00 0.00 40.69 4.69
1926 2630 4.928263 AGTTAGTAACTACTCCCTCCGTT 58.072 43.478 14.00 0.00 40.69 4.44
1927 2631 4.946772 AGTTAGTAACTACTCCCTCCGTTC 59.053 45.833 14.00 0.00 40.69 3.95
1928 2632 3.735720 AGTAACTACTCCCTCCGTTCT 57.264 47.619 0.00 0.00 0.00 3.01
1929 2633 4.851639 AGTAACTACTCCCTCCGTTCTA 57.148 45.455 0.00 0.00 0.00 2.10
1930 2634 5.184892 AGTAACTACTCCCTCCGTTCTAA 57.815 43.478 0.00 0.00 0.00 2.10
1931 2635 5.574188 AGTAACTACTCCCTCCGTTCTAAA 58.426 41.667 0.00 0.00 0.00 1.85
1932 2636 6.193504 AGTAACTACTCCCTCCGTTCTAAAT 58.806 40.000 0.00 0.00 0.00 1.40
1933 2637 6.666980 AGTAACTACTCCCTCCGTTCTAAATT 59.333 38.462 0.00 0.00 0.00 1.82
1934 2638 7.836183 AGTAACTACTCCCTCCGTTCTAAATTA 59.164 37.037 0.00 0.00 0.00 1.40
1935 2639 6.462552 ACTACTCCCTCCGTTCTAAATTAC 57.537 41.667 0.00 0.00 0.00 1.89
1936 2640 6.193504 ACTACTCCCTCCGTTCTAAATTACT 58.806 40.000 0.00 0.00 0.00 2.24
1937 2641 5.595257 ACTCCCTCCGTTCTAAATTACTC 57.405 43.478 0.00 0.00 0.00 2.59
1938 2642 4.097589 ACTCCCTCCGTTCTAAATTACTCG 59.902 45.833 0.00 0.00 0.00 4.18
1939 2643 4.019174 TCCCTCCGTTCTAAATTACTCGT 58.981 43.478 0.00 0.00 0.00 4.18
1940 2644 4.096984 TCCCTCCGTTCTAAATTACTCGTC 59.903 45.833 0.00 0.00 0.00 4.20
1941 2645 4.033684 CCTCCGTTCTAAATTACTCGTCG 58.966 47.826 0.00 0.00 0.00 5.12
1942 2646 4.437930 CCTCCGTTCTAAATTACTCGTCGT 60.438 45.833 0.00 0.00 0.00 4.34
1943 2647 4.406069 TCCGTTCTAAATTACTCGTCGTG 58.594 43.478 0.00 0.00 0.00 4.35
1944 2648 3.545078 CCGTTCTAAATTACTCGTCGTGG 59.455 47.826 0.00 0.00 0.00 4.94
1945 2649 4.161333 CGTTCTAAATTACTCGTCGTGGT 58.839 43.478 0.00 0.00 0.00 4.16
1946 2650 4.618489 CGTTCTAAATTACTCGTCGTGGTT 59.382 41.667 0.00 0.00 0.00 3.67
1947 2651 5.117592 CGTTCTAAATTACTCGTCGTGGTTT 59.882 40.000 0.00 0.79 0.00 3.27
1948 2652 6.346040 CGTTCTAAATTACTCGTCGTGGTTTT 60.346 38.462 0.00 0.00 0.00 2.43
1949 2653 7.148983 CGTTCTAAATTACTCGTCGTGGTTTTA 60.149 37.037 0.00 0.48 0.00 1.52
1950 2654 7.801547 TCTAAATTACTCGTCGTGGTTTTAG 57.198 36.000 13.72 13.72 31.25 1.85
1951 2655 7.370383 TCTAAATTACTCGTCGTGGTTTTAGT 58.630 34.615 16.53 6.04 31.59 2.24
1952 2656 6.849588 AAATTACTCGTCGTGGTTTTAGTT 57.150 33.333 0.00 0.00 0.00 2.24
1953 2657 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
1954 2658 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1955 2659 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
1956 2660 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
1957 2661 4.630940 ACTCGTCGTGGTTTTAGTTCAAAA 59.369 37.500 0.00 0.00 33.66 2.44
1958 2662 5.295045 ACTCGTCGTGGTTTTAGTTCAAAAT 59.705 36.000 0.00 0.00 38.36 1.82
1959 2663 6.121613 TCGTCGTGGTTTTAGTTCAAAATT 57.878 33.333 0.00 0.00 38.36 1.82
1960 2664 6.553524 TCGTCGTGGTTTTAGTTCAAAATTT 58.446 32.000 0.00 0.00 38.36 1.82
1961 2665 6.469595 TCGTCGTGGTTTTAGTTCAAAATTTG 59.530 34.615 0.00 0.00 38.36 2.32
1962 2666 6.469595 CGTCGTGGTTTTAGTTCAAAATTTGA 59.530 34.615 4.03 4.03 38.36 2.69
1963 2667 7.008447 CGTCGTGGTTTTAGTTCAAAATTTGAA 59.992 33.333 16.28 16.28 46.68 2.69
1976 2680 7.743520 TCAAAATTTGAACTAAAACCACGAC 57.256 32.000 5.87 0.00 36.59 4.34
1977 2681 6.469595 TCAAAATTTGAACTAAAACCACGACG 59.530 34.615 5.87 0.00 36.59 5.12
1978 2682 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
1979 2683 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
1980 2684 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
1981 2685 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
1982 2686 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
1983 2687 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
1984 2688 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
1985 2689 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
1986 2690 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
1987 2691 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
1988 2692 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
1989 2693 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
1990 2694 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
1991 2695 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
1992 2696 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
1993 2697 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
1994 2698 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1996 2700 3.323243 ACGAGTAATTTGGAACGGAGTG 58.677 45.455 0.00 0.00 45.00 3.51
1997 2701 3.006110 ACGAGTAATTTGGAACGGAGTGA 59.994 43.478 0.00 0.00 45.00 3.41
1998 2702 3.612860 CGAGTAATTTGGAACGGAGTGAG 59.387 47.826 0.00 0.00 45.00 3.51
2113 2846 5.617252 TCAAGTTCTAAGACGGTTCCATTT 58.383 37.500 0.00 0.00 0.00 2.32
2289 3030 9.990360 TGTGAATGACTACAGATACAGTTTTTA 57.010 29.630 0.00 0.00 0.00 1.52
2347 3088 5.431731 AGTGGTATTGGGAATCCTGATTGTA 59.568 40.000 0.00 0.00 0.00 2.41
2363 3104 4.458989 TGATTGTAAGCAGTGTCCAAATCC 59.541 41.667 0.00 0.00 0.00 3.01
2364 3105 3.788227 TGTAAGCAGTGTCCAAATCCT 57.212 42.857 0.00 0.00 0.00 3.24
2365 3106 3.411446 TGTAAGCAGTGTCCAAATCCTG 58.589 45.455 0.00 0.00 0.00 3.86
2366 3107 2.957402 AAGCAGTGTCCAAATCCTGA 57.043 45.000 0.00 0.00 0.00 3.86
2367 3108 3.446442 AAGCAGTGTCCAAATCCTGAT 57.554 42.857 0.00 0.00 0.00 2.90
2369 3110 3.087031 AGCAGTGTCCAAATCCTGATTG 58.913 45.455 0.00 0.00 0.00 2.67
2370 3111 2.821969 GCAGTGTCCAAATCCTGATTGT 59.178 45.455 0.00 0.00 0.00 2.71
2372 3113 4.074259 CAGTGTCCAAATCCTGATTGTCA 58.926 43.478 0.00 0.00 0.00 3.58
2374 3115 3.084039 TGTCCAAATCCTGATTGTCAGC 58.916 45.455 1.46 0.00 42.98 4.26
2375 3116 3.084039 GTCCAAATCCTGATTGTCAGCA 58.916 45.455 1.46 0.00 42.98 4.41
2376 3117 3.128242 GTCCAAATCCTGATTGTCAGCAG 59.872 47.826 1.46 0.00 42.98 4.24
2377 3118 3.087031 CCAAATCCTGATTGTCAGCAGT 58.913 45.455 1.46 0.00 42.98 4.40
2378 3119 3.119602 CCAAATCCTGATTGTCAGCAGTG 60.120 47.826 1.46 0.00 42.98 3.66
2397 3138 5.297029 GCAGTGTCCCTTTGATTCCTAATAC 59.703 44.000 0.00 0.00 0.00 1.89
2399 3140 4.814771 GTGTCCCTTTGATTCCTAATACCG 59.185 45.833 0.00 0.00 0.00 4.02
2417 3158 9.581099 CTAATACCGCTGGAAAAATTAAAATGT 57.419 29.630 1.50 0.00 0.00 2.71
2428 3169 1.962412 TTAAAATGTTGCAGCTCGCG 58.038 45.000 0.00 0.00 46.97 5.87
2473 4444 7.254863 GCTGGTGGCCAATGATTTATATTTTTG 60.255 37.037 7.24 0.00 30.80 2.44
2721 4708 4.039730 AGGATCTTCACACCCGAGATAATG 59.960 45.833 0.00 0.00 30.64 1.90
2962 4998 7.702348 GTCTTAAAGAGATTTGTTTGCACAAGT 59.298 33.333 0.00 0.00 43.92 3.16
3088 6754 5.486526 TGTCATTTTTCACAGCCAAAGTTT 58.513 33.333 0.00 0.00 0.00 2.66
3089 6755 5.350914 TGTCATTTTTCACAGCCAAAGTTTG 59.649 36.000 8.73 8.73 0.00 2.93
3110 6776 3.829026 TGTACATCTCACAAGCAGAGTCT 59.171 43.478 0.00 0.00 34.73 3.24
3271 8925 2.589014 GCGAGCCTGACAATTTTCTTG 58.411 47.619 0.00 0.00 0.00 3.02
3292 8946 0.473755 TGTGGGATGTGCACTTCTGT 59.526 50.000 26.35 5.94 0.00 3.41
3355 9009 1.374125 CGTCCTGGCGTTCATCACA 60.374 57.895 2.94 0.00 0.00 3.58
3464 9134 1.202348 CGTCATGCTAGTCAGTCAGGG 60.202 57.143 0.00 0.00 0.00 4.45
3676 9432 4.025979 GCGATCGACGATACCTGAAAAATT 60.026 41.667 21.57 0.00 45.77 1.82
3705 9462 7.825681 TGGTTATTGTACAATGGAATGAGTTG 58.174 34.615 27.62 0.00 32.50 3.16
3817 9607 6.363065 TGTAGTCCTCGTCATAGTTAGGAAT 58.637 40.000 0.00 0.00 39.77 3.01
3884 10431 0.545309 TGACCCTGTCCTCCTTCCAG 60.545 60.000 0.00 0.00 0.00 3.86
3901 10448 1.284785 CCAGGTATGGGTGTCATGGTT 59.715 52.381 0.00 0.00 43.54 3.67
3916 10463 6.007076 TGTCATGGTTTATTAAGTCTGCCAA 58.993 36.000 0.00 0.00 0.00 4.52
3926 10473 1.742761 AGTCTGCCAACCATCGAATG 58.257 50.000 0.00 0.00 0.00 2.67
4073 10625 1.134640 TGCATGATGCCTTGCCATTTC 60.135 47.619 15.70 0.00 44.23 2.17
4183 10792 2.555199 GAATGCTATGAGTCGCCAAGT 58.445 47.619 0.00 0.00 0.00 3.16
4304 10917 8.901472 TGCTATATGAAATATACCTCACTCCT 57.099 34.615 0.00 0.00 40.66 3.69
4305 10918 9.326489 TGCTATATGAAATATACCTCACTCCTT 57.674 33.333 0.00 0.00 40.66 3.36
4374 10987 1.055849 TCTGCAAGTGGTAGCAAGGA 58.944 50.000 0.00 0.00 40.73 3.36
4396 11009 2.775911 TTCCACTGCTCATCTTCCTG 57.224 50.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.026718 CAATCTGCCTCGGGTTCACC 61.027 60.000 0.00 0.00 0.00 4.02
1 2 0.036388 TCAATCTGCCTCGGGTTCAC 60.036 55.000 0.00 0.00 0.00 3.18
2 3 0.911769 ATCAATCTGCCTCGGGTTCA 59.088 50.000 0.00 0.00 0.00 3.18
4 5 0.911769 TCATCAATCTGCCTCGGGTT 59.088 50.000 0.00 0.00 0.00 4.11
5 6 1.135094 ATCATCAATCTGCCTCGGGT 58.865 50.000 0.00 0.00 0.00 5.28
6 7 1.071228 TCATCATCAATCTGCCTCGGG 59.929 52.381 0.00 0.00 0.00 5.14
7 8 2.414806 CTCATCATCAATCTGCCTCGG 58.585 52.381 0.00 0.00 0.00 4.63
11 12 3.548770 TGTTCCTCATCATCAATCTGCC 58.451 45.455 0.00 0.00 0.00 4.85
12 13 4.639310 ACTTGTTCCTCATCATCAATCTGC 59.361 41.667 0.00 0.00 0.00 4.26
13 14 5.878669 TCACTTGTTCCTCATCATCAATCTG 59.121 40.000 0.00 0.00 0.00 2.90
14 15 6.058553 TCACTTGTTCCTCATCATCAATCT 57.941 37.500 0.00 0.00 0.00 2.40
15 16 6.726230 CATCACTTGTTCCTCATCATCAATC 58.274 40.000 0.00 0.00 0.00 2.67
16 17 5.067413 GCATCACTTGTTCCTCATCATCAAT 59.933 40.000 0.00 0.00 0.00 2.57
17 18 4.397103 GCATCACTTGTTCCTCATCATCAA 59.603 41.667 0.00 0.00 0.00 2.57
18 19 3.943381 GCATCACTTGTTCCTCATCATCA 59.057 43.478 0.00 0.00 0.00 3.07
19 20 3.314635 GGCATCACTTGTTCCTCATCATC 59.685 47.826 0.00 0.00 0.00 2.92
20 21 3.285484 GGCATCACTTGTTCCTCATCAT 58.715 45.455 0.00 0.00 0.00 2.45
21 22 2.715046 GGCATCACTTGTTCCTCATCA 58.285 47.619 0.00 0.00 0.00 3.07
22 23 1.667724 CGGCATCACTTGTTCCTCATC 59.332 52.381 0.00 0.00 0.00 2.92
23 24 1.679944 CCGGCATCACTTGTTCCTCAT 60.680 52.381 0.00 0.00 0.00 2.90
24 25 0.321564 CCGGCATCACTTGTTCCTCA 60.322 55.000 0.00 0.00 0.00 3.86
25 26 1.648467 GCCGGCATCACTTGTTCCTC 61.648 60.000 24.80 0.00 0.00 3.71
26 27 1.675641 GCCGGCATCACTTGTTCCT 60.676 57.895 24.80 0.00 0.00 3.36
27 28 2.877691 GCCGGCATCACTTGTTCC 59.122 61.111 24.80 0.00 0.00 3.62
28 29 2.480555 CGCCGGCATCACTTGTTC 59.519 61.111 28.98 0.00 0.00 3.18
29 30 3.055719 CCGCCGGCATCACTTGTT 61.056 61.111 28.98 0.00 0.00 2.83
30 31 4.329545 ACCGCCGGCATCACTTGT 62.330 61.111 28.98 8.13 0.00 3.16
31 32 3.499737 GACCGCCGGCATCACTTG 61.500 66.667 28.98 7.87 0.00 3.16
32 33 4.778143 GGACCGCCGGCATCACTT 62.778 66.667 28.98 2.25 0.00 3.16
120 121 2.070039 TCGCCCCCATCGATTTCCT 61.070 57.895 0.00 0.00 0.00 3.36
164 165 0.450583 CTACTAGCTTCACCGCGTCA 59.549 55.000 4.92 0.00 34.40 4.35
258 276 2.755876 TGCCCACTCGCTCGATCT 60.756 61.111 0.00 0.00 0.00 2.75
280 299 2.364961 CTCTTCCTCCCGTCCCCT 59.635 66.667 0.00 0.00 0.00 4.79
328 351 3.953775 CGTGGTGAACCCTGGCCT 61.954 66.667 3.32 0.00 34.29 5.19
332 355 2.347490 CTCCCGTGGTGAACCCTG 59.653 66.667 0.00 0.00 34.29 4.45
336 359 2.048503 CCGACTCCCGTGGTGAAC 60.049 66.667 0.00 0.00 36.31 3.18
337 360 3.998672 GCCGACTCCCGTGGTGAA 61.999 66.667 0.00 0.00 36.31 3.18
350 374 0.982326 ACGGGGTATAAAAGGGCCGA 60.982 55.000 0.00 0.00 0.00 5.54
351 375 0.816421 CACGGGGTATAAAAGGGCCG 60.816 60.000 0.00 0.00 0.00 6.13
354 378 2.237893 AGTCACACGGGGTATAAAAGGG 59.762 50.000 0.00 0.00 0.00 3.95
355 379 3.055675 TCAGTCACACGGGGTATAAAAGG 60.056 47.826 0.00 0.00 0.00 3.11
358 382 4.620589 TTTCAGTCACACGGGGTATAAA 57.379 40.909 0.00 0.00 0.00 1.40
359 383 4.223255 TCATTTCAGTCACACGGGGTATAA 59.777 41.667 0.00 0.00 0.00 0.98
360 384 3.770388 TCATTTCAGTCACACGGGGTATA 59.230 43.478 0.00 0.00 0.00 1.47
361 385 2.569853 TCATTTCAGTCACACGGGGTAT 59.430 45.455 0.00 0.00 0.00 2.73
363 387 0.762418 TCATTTCAGTCACACGGGGT 59.238 50.000 0.00 0.00 0.00 4.95
364 388 1.156736 GTCATTTCAGTCACACGGGG 58.843 55.000 0.00 0.00 0.00 5.73
365 389 0.790207 CGTCATTTCAGTCACACGGG 59.210 55.000 0.00 0.00 0.00 5.28
366 390 1.778334 TCGTCATTTCAGTCACACGG 58.222 50.000 0.00 0.00 0.00 4.94
369 393 4.536065 GCATTTTCGTCATTTCAGTCACA 58.464 39.130 0.00 0.00 0.00 3.58
371 395 3.057596 GGGCATTTTCGTCATTTCAGTCA 60.058 43.478 0.00 0.00 0.00 3.41
372 396 3.501950 GGGCATTTTCGTCATTTCAGTC 58.498 45.455 0.00 0.00 0.00 3.51
374 398 2.731968 CGGGGCATTTTCGTCATTTCAG 60.732 50.000 0.00 0.00 0.00 3.02
441 469 2.423898 TAGCCCTCCTGTAGCGCAC 61.424 63.158 11.47 6.60 30.93 5.34
443 471 2.356818 CTGTAGCCCTCCTGTAGCGC 62.357 65.000 0.00 0.00 0.00 5.92
445 473 0.397254 TCCTGTAGCCCTCCTGTAGC 60.397 60.000 0.00 0.00 0.00 3.58
446 474 1.698506 CTCCTGTAGCCCTCCTGTAG 58.301 60.000 0.00 0.00 0.00 2.74
448 476 1.002274 CCTCCTGTAGCCCTCCTGT 59.998 63.158 0.00 0.00 0.00 4.00
452 480 2.904131 GCACCTCCTGTAGCCCTC 59.096 66.667 0.00 0.00 0.00 4.30
455 483 2.286127 GACTCGCACCTCCTGTAGCC 62.286 65.000 0.00 0.00 0.00 3.93
456 484 1.139947 GACTCGCACCTCCTGTAGC 59.860 63.158 0.00 0.00 0.00 3.58
457 485 0.736053 GAGACTCGCACCTCCTGTAG 59.264 60.000 0.00 0.00 0.00 2.74
458 486 1.025113 CGAGACTCGCACCTCCTGTA 61.025 60.000 12.67 0.00 31.14 2.74
460 488 1.380403 ATCGAGACTCGCACCTCCTG 61.380 60.000 20.11 0.00 40.21 3.86
461 489 1.077357 ATCGAGACTCGCACCTCCT 60.077 57.895 20.11 0.00 40.21 3.69
462 490 1.357334 GATCGAGACTCGCACCTCC 59.643 63.158 20.11 1.76 40.21 4.30
463 491 1.357334 GGATCGAGACTCGCACCTC 59.643 63.158 20.11 12.62 40.21 3.85
464 492 2.473760 CGGATCGAGACTCGCACCT 61.474 63.158 25.56 11.61 40.21 4.00
465 493 2.024871 CGGATCGAGACTCGCACC 59.975 66.667 20.11 21.05 40.21 5.01
466 494 1.297745 GTCGGATCGAGACTCGCAC 60.298 63.158 20.11 14.77 40.21 5.34
467 495 2.810012 CGTCGGATCGAGACTCGCA 61.810 63.158 20.11 9.48 40.21 5.10
468 496 2.052941 CGTCGGATCGAGACTCGC 60.053 66.667 20.11 6.96 40.21 5.03
469 497 2.627004 CCGTCGGATCGAGACTCG 59.373 66.667 18.91 18.91 42.10 4.18
470 498 3.023950 CCCGTCGGATCGAGACTC 58.976 66.667 14.39 0.00 36.23 3.36
471 499 3.210528 GCCCGTCGGATCGAGACT 61.211 66.667 14.39 0.00 36.23 3.24
472 500 4.609247 CGCCCGTCGGATCGAGAC 62.609 72.222 14.39 9.20 36.23 3.36
496 525 2.123854 TCGGATCGACCCCTGGAG 60.124 66.667 0.00 0.00 34.64 3.86
519 548 2.164219 TCGGCTTGCTTGATTGATTTCC 59.836 45.455 0.00 0.00 0.00 3.13
520 549 3.492421 TCGGCTTGCTTGATTGATTTC 57.508 42.857 0.00 0.00 0.00 2.17
523 552 1.952296 GGATCGGCTTGCTTGATTGAT 59.048 47.619 0.00 0.00 0.00 2.57
524 553 1.382522 GGATCGGCTTGCTTGATTGA 58.617 50.000 0.00 0.00 0.00 2.57
526 555 0.107703 TCGGATCGGCTTGCTTGATT 60.108 50.000 0.00 0.00 0.00 2.57
544 573 0.527565 ATTTGGCATTGCTGACCGTC 59.472 50.000 8.82 0.00 0.00 4.79
553 582 1.065102 CTCCTCAGCGATTTGGCATTG 59.935 52.381 0.00 0.00 34.64 2.82
557 586 3.105659 GCTCCTCAGCGATTTGGC 58.894 61.111 0.00 0.00 35.39 4.52
576 605 0.038159 CGAGACCGCTCCAAACTTCT 60.038 55.000 0.00 0.00 37.91 2.85
581 610 1.670791 AAAAACGAGACCGCTCCAAA 58.329 45.000 0.00 0.00 37.91 3.28
582 611 3.390003 AAAAACGAGACCGCTCCAA 57.610 47.368 0.00 0.00 37.91 3.53
603 632 2.496899 ATGGCGGACATGGATAATCC 57.503 50.000 0.00 0.00 38.70 3.01
604 633 4.853924 AAAATGGCGGACATGGATAATC 57.146 40.909 0.00 0.00 40.44 1.75
612 641 1.006639 ACCCCTAAAAATGGCGGACAT 59.993 47.619 0.00 0.00 43.07 3.06
613 642 0.406361 ACCCCTAAAAATGGCGGACA 59.594 50.000 0.00 0.00 0.00 4.02
618 647 1.674519 CCGCAAACCCCTAAAAATGGC 60.675 52.381 0.00 0.00 0.00 4.40
619 648 1.896465 TCCGCAAACCCCTAAAAATGG 59.104 47.619 0.00 0.00 0.00 3.16
639 668 1.344438 TGTCACTTTCACGGCATCTCT 59.656 47.619 0.00 0.00 0.00 3.10
648 677 1.082756 CGCGGCTTGTCACTTTCAC 60.083 57.895 0.00 0.00 0.00 3.18
714 743 0.037605 CAGGAAACTTCGCGGTAGGT 60.038 55.000 6.13 0.00 40.21 3.08
715 744 0.739813 CCAGGAAACTTCGCGGTAGG 60.740 60.000 6.13 0.00 40.21 3.18
793 829 2.648059 GGAAAGGTGATGGACTGATGG 58.352 52.381 0.00 0.00 0.00 3.51
794 830 2.025981 TGGGAAAGGTGATGGACTGATG 60.026 50.000 0.00 0.00 0.00 3.07
795 831 2.278245 TGGGAAAGGTGATGGACTGAT 58.722 47.619 0.00 0.00 0.00 2.90
796 832 1.741028 TGGGAAAGGTGATGGACTGA 58.259 50.000 0.00 0.00 0.00 3.41
797 833 2.240667 AGATGGGAAAGGTGATGGACTG 59.759 50.000 0.00 0.00 0.00 3.51
798 834 2.507471 GAGATGGGAAAGGTGATGGACT 59.493 50.000 0.00 0.00 0.00 3.85
799 835 2.743183 CGAGATGGGAAAGGTGATGGAC 60.743 54.545 0.00 0.00 0.00 4.02
800 836 1.486310 CGAGATGGGAAAGGTGATGGA 59.514 52.381 0.00 0.00 0.00 3.41
905 964 1.218047 GCACGGATCTGTGGCAGTA 59.782 57.895 30.96 0.00 40.26 2.74
952 1025 2.444895 GGGAGGTGAGGCGGAGAT 60.445 66.667 0.00 0.00 0.00 2.75
1105 1198 0.173708 GCGCTGTAGTTGGAGTAGCT 59.826 55.000 0.00 0.00 32.43 3.32
1182 1330 4.744137 TGGTCATGAATTTGCAAGAAAACG 59.256 37.500 0.00 0.00 0.00 3.60
1203 1351 4.180057 GCTACTTGAGTCTTGAGTGATGG 58.820 47.826 0.00 0.00 0.00 3.51
1322 1968 6.403866 AATCTGCCTCATCTAAGTACTCTG 57.596 41.667 0.00 0.00 0.00 3.35
1371 2017 7.563906 TCACCAGGTTTTCAATTCAGAAAAAT 58.436 30.769 5.52 0.00 45.81 1.82
1443 2094 2.001872 GATTTGCTTTTCCAATGCCGG 58.998 47.619 0.00 0.00 0.00 6.13
1502 2163 9.512435 CAGTTTCTTCAATTATCAGCCTAATTG 57.488 33.333 13.75 13.75 44.75 2.32
1504 2165 9.638176 ATCAGTTTCTTCAATTATCAGCCTAAT 57.362 29.630 0.00 0.00 0.00 1.73
1505 2166 8.896744 CATCAGTTTCTTCAATTATCAGCCTAA 58.103 33.333 0.00 0.00 0.00 2.69
1507 2168 6.320672 CCATCAGTTTCTTCAATTATCAGCCT 59.679 38.462 0.00 0.00 0.00 4.58
1508 2169 6.319658 TCCATCAGTTTCTTCAATTATCAGCC 59.680 38.462 0.00 0.00 0.00 4.85
1516 2177 8.125978 TGCTTTAATCCATCAGTTTCTTCAAT 57.874 30.769 0.00 0.00 0.00 2.57
1544 2205 6.704493 GTCGCCATAGTTGAGGTATCAATAAA 59.296 38.462 0.00 0.00 46.75 1.40
1566 2228 2.079158 AGAACACAATGATGGCTGTCG 58.921 47.619 0.00 0.00 0.00 4.35
1571 2233 7.859377 CAGATTACATAAGAACACAATGATGGC 59.141 37.037 0.00 0.00 0.00 4.40
1622 2310 3.191371 GGTTCCAACTTCCAAGCACATAG 59.809 47.826 0.00 0.00 0.00 2.23
1646 2334 5.295292 CACCATCTAGCCTTTGTGTATGAAG 59.705 44.000 0.00 0.00 0.00 3.02
1659 2347 2.622436 GACACTGAACACCATCTAGCC 58.378 52.381 0.00 0.00 0.00 3.93
1661 2349 3.850122 TCGACACTGAACACCATCTAG 57.150 47.619 0.00 0.00 0.00 2.43
1662 2350 4.801330 ATTCGACACTGAACACCATCTA 57.199 40.909 0.00 0.00 0.00 1.98
1663 2351 3.685139 ATTCGACACTGAACACCATCT 57.315 42.857 0.00 0.00 0.00 2.90
1664 2352 4.495422 AGTATTCGACACTGAACACCATC 58.505 43.478 0.00 0.00 0.00 3.51
1667 2355 8.644318 ATTTATAGTATTCGACACTGAACACC 57.356 34.615 8.75 0.00 0.00 4.16
1687 2375 9.932207 TTGTCATGATGCTGAAGAAAAATTTAT 57.068 25.926 0.00 0.00 0.00 1.40
1688 2376 9.761504 TTTGTCATGATGCTGAAGAAAAATTTA 57.238 25.926 0.00 0.00 0.00 1.40
1689 2377 8.665643 TTTGTCATGATGCTGAAGAAAAATTT 57.334 26.923 0.00 0.00 0.00 1.82
1690 2378 8.665643 TTTTGTCATGATGCTGAAGAAAAATT 57.334 26.923 0.00 0.00 0.00 1.82
1691 2379 8.665643 TTTTTGTCATGATGCTGAAGAAAAAT 57.334 26.923 0.00 0.00 30.94 1.82
1739 2427 4.927267 AGAAGTTATCCATGTGTTCCCA 57.073 40.909 0.00 0.00 0.00 4.37
1773 2461 6.544564 TGTGTATGTACGATGGACTGATTAGA 59.455 38.462 0.00 0.00 0.00 2.10
1808 2496 8.487313 TTTCGTACATGCTAAGTCAAATGTAT 57.513 30.769 0.00 0.00 37.71 2.29
1905 2608 4.946772 AGAACGGAGGGAGTAGTTACTAAC 59.053 45.833 0.00 0.00 36.50 2.34
1912 2616 6.193504 AGTAATTTAGAACGGAGGGAGTAGT 58.806 40.000 0.00 0.00 0.00 2.73
1913 2617 6.513066 CGAGTAATTTAGAACGGAGGGAGTAG 60.513 46.154 0.00 0.00 0.00 2.57
1914 2618 5.297776 CGAGTAATTTAGAACGGAGGGAGTA 59.702 44.000 0.00 0.00 0.00 2.59
1917 2621 4.019174 ACGAGTAATTTAGAACGGAGGGA 58.981 43.478 0.00 0.00 0.00 4.20
1918 2622 4.357996 GACGAGTAATTTAGAACGGAGGG 58.642 47.826 0.00 0.00 0.00 4.30
1919 2623 4.033684 CGACGAGTAATTTAGAACGGAGG 58.966 47.826 0.00 0.00 0.00 4.30
1920 2624 4.494764 CACGACGAGTAATTTAGAACGGAG 59.505 45.833 0.00 0.00 0.00 4.63
1921 2625 4.406069 CACGACGAGTAATTTAGAACGGA 58.594 43.478 0.00 0.00 0.00 4.69
1922 2626 3.545078 CCACGACGAGTAATTTAGAACGG 59.455 47.826 0.00 0.00 0.00 4.44
1923 2627 4.161333 ACCACGACGAGTAATTTAGAACG 58.839 43.478 0.00 0.00 0.00 3.95
1924 2628 6.457851 AAACCACGACGAGTAATTTAGAAC 57.542 37.500 0.00 0.00 0.00 3.01
1925 2629 7.867403 ACTAAAACCACGACGAGTAATTTAGAA 59.133 33.333 20.72 1.10 36.27 2.10
1926 2630 7.370383 ACTAAAACCACGACGAGTAATTTAGA 58.630 34.615 20.72 3.40 36.27 2.10
1927 2631 7.572502 ACTAAAACCACGACGAGTAATTTAG 57.427 36.000 0.00 12.05 37.40 1.85
1928 2632 7.651304 TGAACTAAAACCACGACGAGTAATTTA 59.349 33.333 0.00 1.47 0.00 1.40
1929 2633 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
1930 2634 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
1931 2635 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
1932 2636 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
1933 2637 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
1934 2638 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
1935 2639 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
1936 2640 5.738118 ATTTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 40.80 4.20
1937 2641 6.469595 TCAAATTTTGAACTAAAACCACGACG 59.530 34.615 9.36 0.00 40.80 5.12
1938 2642 7.743520 TCAAATTTTGAACTAAAACCACGAC 57.256 32.000 9.36 0.00 40.80 4.34
1951 2655 7.008447 CGTCGTGGTTTTAGTTCAAATTTTGAA 59.992 33.333 18.29 18.29 46.68 2.69
1952 2656 6.469595 CGTCGTGGTTTTAGTTCAAATTTTGA 59.530 34.615 7.74 7.74 38.04 2.69
1953 2657 6.469595 TCGTCGTGGTTTTAGTTCAAATTTTG 59.530 34.615 2.59 2.59 0.00 2.44
1954 2658 6.553524 TCGTCGTGGTTTTAGTTCAAATTTT 58.446 32.000 0.00 0.00 0.00 1.82
1955 2659 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
1956 2660 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
1957 2661 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
1958 2662 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
1959 2663 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
1960 2664 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1961 2665 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
1962 2666 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
1963 2667 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
1964 2668 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
1965 2669 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
1966 2670 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
1967 2671 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
1968 2672 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
1969 2673 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
1970 2674 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
1971 2675 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
1972 2676 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
1973 2677 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1974 2678 3.367025 CACTCCGTTCCAAATTACTCGTC 59.633 47.826 0.00 0.00 0.00 4.20
1975 2679 3.006110 TCACTCCGTTCCAAATTACTCGT 59.994 43.478 0.00 0.00 0.00 4.18
1976 2680 3.581755 TCACTCCGTTCCAAATTACTCG 58.418 45.455 0.00 0.00 0.00 4.18
1977 2681 4.566987 ACTCACTCCGTTCCAAATTACTC 58.433 43.478 0.00 0.00 0.00 2.59
1978 2682 4.618920 ACTCACTCCGTTCCAAATTACT 57.381 40.909 0.00 0.00 0.00 2.24
1979 2683 5.476614 ACTACTCACTCCGTTCCAAATTAC 58.523 41.667 0.00 0.00 0.00 1.89
1980 2684 5.733620 ACTACTCACTCCGTTCCAAATTA 57.266 39.130 0.00 0.00 0.00 1.40
1981 2685 4.618920 ACTACTCACTCCGTTCCAAATT 57.381 40.909 0.00 0.00 0.00 1.82
1982 2686 5.934402 ATACTACTCACTCCGTTCCAAAT 57.066 39.130 0.00 0.00 0.00 2.32
1983 2687 5.733620 AATACTACTCACTCCGTTCCAAA 57.266 39.130 0.00 0.00 0.00 3.28
1984 2688 5.011329 ACAAATACTACTCACTCCGTTCCAA 59.989 40.000 0.00 0.00 0.00 3.53
1985 2689 4.525487 ACAAATACTACTCACTCCGTTCCA 59.475 41.667 0.00 0.00 0.00 3.53
1986 2690 5.069501 ACAAATACTACTCACTCCGTTCC 57.930 43.478 0.00 0.00 0.00 3.62
1987 2691 5.800941 CAGACAAATACTACTCACTCCGTTC 59.199 44.000 0.00 0.00 0.00 3.95
1988 2692 5.336531 CCAGACAAATACTACTCACTCCGTT 60.337 44.000 0.00 0.00 0.00 4.44
1989 2693 4.158025 CCAGACAAATACTACTCACTCCGT 59.842 45.833 0.00 0.00 0.00 4.69
1990 2694 4.158025 ACCAGACAAATACTACTCACTCCG 59.842 45.833 0.00 0.00 0.00 4.63
1991 2695 5.185249 TCACCAGACAAATACTACTCACTCC 59.815 44.000 0.00 0.00 0.00 3.85
1992 2696 6.094061 GTCACCAGACAAATACTACTCACTC 58.906 44.000 0.00 0.00 44.34 3.51
1993 2697 5.047235 GGTCACCAGACAAATACTACTCACT 60.047 44.000 0.00 0.00 46.80 3.41
1994 2698 5.169295 GGTCACCAGACAAATACTACTCAC 58.831 45.833 0.00 0.00 46.80 3.51
1995 2699 4.222145 GGGTCACCAGACAAATACTACTCA 59.778 45.833 0.00 0.00 46.80 3.41
1996 2700 4.222145 TGGGTCACCAGACAAATACTACTC 59.778 45.833 0.00 0.00 46.80 2.59
1997 2701 4.164981 TGGGTCACCAGACAAATACTACT 58.835 43.478 0.00 0.00 46.80 2.57
1998 2702 4.546829 TGGGTCACCAGACAAATACTAC 57.453 45.455 0.00 0.00 46.80 2.73
2289 3030 7.812191 TGAAATGTCGCAACTAGCATTTTAAAT 59.188 29.630 0.00 0.00 46.13 1.40
2347 3088 2.957402 TCAGGATTTGGACACTGCTT 57.043 45.000 0.00 0.00 0.00 3.91
2363 3104 1.002888 AGGGACACTGCTGACAATCAG 59.997 52.381 1.29 1.29 46.90 2.90
2364 3105 1.059098 AGGGACACTGCTGACAATCA 58.941 50.000 0.00 0.00 0.00 2.57
2365 3106 2.191128 AAGGGACACTGCTGACAATC 57.809 50.000 0.00 0.00 0.00 2.67
2366 3107 2.158623 TCAAAGGGACACTGCTGACAAT 60.159 45.455 0.00 0.00 0.00 2.71
2367 3108 1.211703 TCAAAGGGACACTGCTGACAA 59.788 47.619 0.00 0.00 0.00 3.18
2369 3110 2.191128 ATCAAAGGGACACTGCTGAC 57.809 50.000 0.00 0.00 0.00 3.51
2370 3111 2.553028 GGAATCAAAGGGACACTGCTGA 60.553 50.000 0.00 0.00 0.00 4.26
2372 3113 1.707427 AGGAATCAAAGGGACACTGCT 59.293 47.619 0.00 0.00 0.00 4.24
2374 3115 5.823045 GGTATTAGGAATCAAAGGGACACTG 59.177 44.000 0.00 0.00 0.00 3.66
2375 3116 5.396436 CGGTATTAGGAATCAAAGGGACACT 60.396 44.000 0.00 0.00 0.00 3.55
2376 3117 4.814771 CGGTATTAGGAATCAAAGGGACAC 59.185 45.833 0.00 0.00 0.00 3.67
2377 3118 4.685030 GCGGTATTAGGAATCAAAGGGACA 60.685 45.833 0.00 0.00 0.00 4.02
2378 3119 3.813724 GCGGTATTAGGAATCAAAGGGAC 59.186 47.826 0.00 0.00 0.00 4.46
2397 3138 5.049818 TGCAACATTTTAATTTTTCCAGCGG 60.050 36.000 0.00 0.00 0.00 5.52
2399 3140 5.852755 GCTGCAACATTTTAATTTTTCCAGC 59.147 36.000 0.00 0.00 30.59 4.85
2417 3158 4.092652 CATGCACGCGAGCTGCAA 62.093 61.111 27.94 9.42 45.83 4.08
2428 3169 1.334419 GCACACAGTCAAGACATGCAC 60.334 52.381 2.72 0.00 32.31 4.57
2473 4444 4.397103 TCTCAATGGCATGAACTTGATGTC 59.603 41.667 0.00 0.00 0.00 3.06
2528 4499 9.219603 CCAAACAATTCTGAATAGTAGTCAAGA 57.780 33.333 2.85 0.00 0.00 3.02
2721 4708 8.131100 CCAGTCAACCATAACAATGATCAATAC 58.869 37.037 0.00 0.00 0.00 1.89
2760 4747 7.930865 AGCTCATGGACAATAGAAGAGATAAAC 59.069 37.037 0.00 0.00 0.00 2.01
2962 4998 2.742053 GTTGCTAAAGTTCGATGGAGCA 59.258 45.455 4.49 4.49 38.12 4.26
3073 6739 4.887071 AGATGTACAAACTTTGGCTGTGAA 59.113 37.500 0.00 0.00 34.12 3.18
3088 6754 3.829026 AGACTCTGCTTGTGAGATGTACA 59.171 43.478 0.00 0.00 35.66 2.90
3089 6755 4.448537 AGACTCTGCTTGTGAGATGTAC 57.551 45.455 0.00 0.00 35.66 2.90
3271 8925 1.741706 CAGAAGTGCACATCCCACATC 59.258 52.381 21.04 3.99 35.69 3.06
3292 8946 1.135139 GCCAGCTTCGAGTATGTCTCA 59.865 52.381 0.00 0.00 42.88 3.27
3355 9009 2.654877 GCAGCTTGCAGCAACCAT 59.345 55.556 2.83 0.00 45.56 3.55
3464 9134 4.264460 TCACATTGCAACAATTTACCCC 57.736 40.909 0.00 0.00 0.00 4.95
3661 9417 6.743575 AACCAGAGAATTTTTCAGGTATCG 57.256 37.500 4.71 0.00 33.29 2.92
3676 9432 7.629157 TCATTCCATTGTACAATAACCAGAGA 58.371 34.615 20.39 10.12 0.00 3.10
3705 9462 2.546795 CCCAGCCACACGAAGAGATATC 60.547 54.545 0.00 0.00 0.00 1.63
3884 10431 6.831868 ACTTAATAAACCATGACACCCATACC 59.168 38.462 0.00 0.00 33.31 2.73
3901 10448 5.092554 TCGATGGTTGGCAGACTTAATAA 57.907 39.130 0.00 0.00 0.00 1.40
3916 10463 1.935873 CAACATCTCGCATTCGATGGT 59.064 47.619 0.00 0.00 44.56 3.55
3926 10473 2.596904 TAAGCCCTACAACATCTCGC 57.403 50.000 0.00 0.00 0.00 5.03
4025 10577 3.075148 GGAGTTGCTCAAGTAAGGGTTC 58.925 50.000 0.00 0.00 31.08 3.62
4033 10585 2.435372 TGGTTTGGAGTTGCTCAAGT 57.565 45.000 0.00 0.00 31.08 3.16
4183 10792 1.257743 AGCTCACCTCGCTAGACAAA 58.742 50.000 0.00 0.00 35.63 2.83
4304 10917 8.222433 CGACACGTATGAAATAACTAAACCAAA 58.778 33.333 0.00 0.00 0.00 3.28
4305 10918 7.598118 TCGACACGTATGAAATAACTAAACCAA 59.402 33.333 0.00 0.00 0.00 3.67
4323 10936 5.528870 TCTATGCATGAAATATCGACACGT 58.471 37.500 10.16 0.00 0.00 4.49
4340 10953 4.749099 ACTTGCAGATCGATCTTTCTATGC 59.251 41.667 25.25 23.12 34.22 3.14
4374 10987 4.015084 CAGGAAGATGAGCAGTGGAAAAT 58.985 43.478 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.