AutoCloner

Multiple sequence alignment - TraesCS3B01G511400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G511400	chr3B	100.000	4218	0	0	1	4218	755174795	755170578	0.000000e+00	7790
1	TraesCS3B01G511400	chr3B	93.193	2659	157	14	1160	3812	756118760	756121400	0.000000e+00	3886
2	TraesCS3B01G511400	chr3B	95.564	789	24	9	1	780	756117577	756118363	0.000000e+00	1253
3	TraesCS3B01G511400	chr3B	100.000	191	0	0	756	946	756118309	756118499	1.870000e-93	353
4	TraesCS3B01G511400	chr3B	82.895	380	37	13	3807	4179	756121437	756121795	2.450000e-82	316
5	TraesCS3B01G511400	chr3D	93.553	3009	150	18	756	3750	567196991	567199969	0.000000e+00	4442
6	TraesCS3B01G511400	chr3D	93.876	2384	126	8	858	3235	569572400	569570031	0.000000e+00	3576
7	TraesCS3B01G511400	chr3D	82.333	866	109	25	3332	4183	569570028	569569193	0.000000e+00	712
8	TraesCS3B01G511400	chr3D	93.713	334	17	4	448	780	567196711	567197041	8.140000e-137	497
9	TraesCS3B01G511400	chr3D	80.516	426	68	12	12	427	567192938	567193358	3.170000e-81	313
10	TraesCS3B01G511400	chr3D	92.308	169	12	1	4012	4179	567199967	567200135	5.450000e-59	239
11	TraesCS3B01G511400	chr3D	85.930	199	16	7	750	947	567193638	567193825	7.150000e-48	202
12	TraesCS3B01G511400	chr3D	88.272	162	16	1	991	1152	567194595	567194753	1.550000e-44	191
13	TraesCS3B01G511400	chr3D	97.143	70	0	1	1	70	567196649	567196716	2.660000e-22	117
14	TraesCS3B01G511400	chr3A	93.602	2704	156	12	1206	3895	701893455	701890755	0.000000e+00	4019
15	TraesCS3B01G511400	chr3A	93.888	2356	117	14	935	3279	700593695	700591356	0.000000e+00	3528
16	TraesCS3B01G511400	chr3A	90.122	820	60	11	3273	4073	700591333	700590516	0.000000e+00	1046
17	TraesCS3B01G511400	chr3A	87.527	457	43	9	3733	4179	701885307	701884855	2.250000e-142	516
18	TraesCS3B01G511400	chr3A	95.327	214	10	0	3017	3230	701885524	701885311	1.450000e-89	340
19	TraesCS3B01G511400	chr3A	74.074	513	68	33	3417	3909	700806496	700806963	2.630000e-32	150
20	TraesCS3B01G511400	chr3A	85.088	114	13	4	521	631	572146551	572146439	3.450000e-21	113
21	TraesCS3B01G511400	chrUn	92.625	1966	129	12	1638	3599	361873612	361875565	0.000000e+00	2813
22	TraesCS3B01G511400	chrUn	95.074	1279	46	3	1087	2365	320257098	320258359	0.000000e+00	1997
23	TraesCS3B01G511400	chrUn	95.981	1045	42	0	1321	2365	446900878	446901922	0.000000e+00	1698
24	TraesCS3B01G511400	chrUn	95.331	921	31	9	1	914	320256183	320257098	0.000000e+00	1452
25	TraesCS3B01G511400	chrUn	95.331	921	31	9	1	914	357700833	357701748	0.000000e+00	1452
26	TraesCS3B01G511400	chrUn	86.607	784	90	12	3035	3812	407073989	407073215	0.000000e+00	852
27	TraesCS3B01G511400	chrUn	82.895	380	37	13	3807	4179	255365825	255365467	2.450000e-82	316
28	TraesCS3B01G511400	chrUn	82.895	380	37	13	3807	4179	365037796	365038154	2.450000e-82	316
29	TraesCS3B01G511400	chrUn	82.895	380	37	13	3807	4179	407073178	407072820	2.450000e-82	316
30	TraesCS3B01G511400	chr7D	81.707	164	23	6	516	674	101033710	101033871	3.420000e-26	130
31	TraesCS3B01G511400	chr7D	78.261	184	20	13	519	685	628872821	628873001	2.680000e-17	100
32	TraesCS3B01G511400	chr2D	81.707	164	21	8	512	669	136034323	136034483	1.230000e-25	128
33	TraesCS3B01G511400	chr4B	84.252	127	11	8	503	626	606758772	606758892	9.580000e-22	115

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G511400	chr3B	755170578	755174795	4217	True	7790.000000	7790	100.0000	1	4218	1	chr3B.!!$R1	4217
1	TraesCS3B01G511400	chr3B	756117577	756121795	4218	False	1452.000000	3886	92.9130	1	4179	4	chr3B.!!$F1	4178
2	TraesCS3B01G511400	chr3D	569569193	569572400	3207	True	2144.000000	3576	88.1045	858	4183	2	chr3D.!!$R1	3325
3	TraesCS3B01G511400	chr3D	567192938	567200135	7197	False	857.285714	4442	90.2050	1	4179	7	chr3D.!!$F1	4178
4	TraesCS3B01G511400	chr3A	701890755	701893455	2700	True	4019.000000	4019	93.6020	1206	3895	1	chr3A.!!$R2	2689
5	TraesCS3B01G511400	chr3A	700590516	700593695	3179	True	2287.000000	3528	92.0050	935	4073	2	chr3A.!!$R3	3138
6	TraesCS3B01G511400	chr3A	701884855	701885524	669	True	428.000000	516	91.4270	3017	4179	2	chr3A.!!$R4	1162
7	TraesCS3B01G511400	chrUn	361873612	361875565	1953	False	2813.000000	2813	92.6250	1638	3599	1	chrUn.!!$F2	1961
8	TraesCS3B01G511400	chrUn	320256183	320258359	2176	False	1724.500000	1997	95.2025	1	2365	2	chrUn.!!$F5	2364
9	TraesCS3B01G511400	chrUn	446900878	446901922	1044	False	1698.000000	1698	95.9810	1321	2365	1	chrUn.!!$F4	1044
10	TraesCS3B01G511400	chrUn	357700833	357701748	915	False	1452.000000	1452	95.3310	1	914	1	chrUn.!!$F1	913
11	TraesCS3B01G511400	chrUn	407072820	407073989	1169	True	584.000000	852	84.7510	3035	4179	2	chrUn.!!$R2	1144

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
642	3987	0.103390	TTTGTTCCGCGAGAGACACA	59.897	50.0	8.23	2.01	0.00	3.72	F
1744	5139	0.901114	TCCGGTCCACCATCGAAGAA	60.901	55.0	0.00	0.00	43.58	2.52	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2206	5604	0.178995	TGCTGGAACCTGCAACATCA	60.179	50.0	19.90	0.0	45.40	3.07	R
3291	6733	0.032952	TTCAGTGCTCCGCGTACTTT	59.967	50.0	4.92	0.0	36.35	2.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
157	160	3.305398	AAGCTTGTGACTAGTTCTCGG	57.695	47.619	0.00	0.00	0.00	4.63
212	215	9.567848	GTTTTCTTATTATTTGAGAATGCGGAA	57.432	29.630	0.00	0.00	30.26	4.30
258	261	2.099141	TTGACCAAGATCCAAGAGCG	57.901	50.000	0.00	0.00	0.00	5.03
418	428	8.644264	TTTAATATTTCTGTACGTGTTTTCGC	57.356	30.769	0.00	0.00	0.00	4.70
642	3987	0.103390	TTTGTTCCGCGAGAGACACA	59.897	50.000	8.23	2.01	0.00	3.72
652	3997	4.386230	CGCGAGAGACACAAATTTACTTG	58.614	43.478	0.00	0.00	0.00	3.16
1744	5139	0.901114	TCCGGTCCACCATCGAAGAA	60.901	55.000	0.00	0.00	43.58	2.52
1753	5148	2.355756	CACCATCGAAGAAATCCGCAAT	59.644	45.455	0.00	0.00	43.58	3.56
1811	5209	1.146358	GCGTTATGCAGACGAGGACC	61.146	60.000	24.30	6.84	45.45	4.46
2050	5448	6.334989	TGCATTGAAGGAATTCATTGATGTC	58.665	36.000	10.56	10.24	35.48	3.06
2206	5604	3.501349	TCCTAGAGTTGTGAGCACTCTT	58.499	45.455	8.75	0.00	40.78	2.85
2229	5627	1.531365	TTGCAGGTTCCAGCAAGGG	60.531	57.895	15.69	0.00	44.98	3.95
2255	5662	1.064389	GGAAGGGAAAGAGGATGGTGG	60.064	57.143	0.00	0.00	0.00	4.61
2266	5673	2.104963	GAGGATGGTGGATGGAGGTAAC	59.895	54.545	0.00	0.00	0.00	2.50
2533	5940	2.171448	ACCAGTTGAGATCCTACCATGC	59.829	50.000	0.00	0.00	0.00	4.06
2643	6050	5.565455	AGAGGAAATCCAATTGGCAAAAA	57.435	34.783	20.33	2.04	38.89	1.94
2669	6076	3.859414	GCTCTGATGCGGGAGGCT	61.859	66.667	0.00	0.00	44.05	4.58
2697	6104	6.205464	CCACTTGAGCAGAAAGTAGAAATTCA	59.795	38.462	0.00	0.00	35.70	2.57
2750	6160	5.661056	TGGAGGTAGTGATAGTGAAAGTG	57.339	43.478	0.00	0.00	0.00	3.16
2781	6194	2.180276	TCAGGAGCCCTCTACTTCAAC	58.820	52.381	0.00	0.00	28.62	3.18
2791	6204	5.178797	CCCTCTACTTCAACGATGACAAAT	58.821	41.667	0.00	0.00	34.61	2.32
2815	6228	9.719355	AATATAAATAATGACACCAGCGACATA	57.281	29.630	0.00	0.00	0.00	2.29
2951	6364	1.202114	GAATCCGCCAGCACAATGAAA	59.798	47.619	0.00	0.00	0.00	2.69
2957	6370	2.801679	CGCCAGCACAATGAAAATGTTT	59.198	40.909	0.00	0.00	0.00	2.83
3033	6446	1.303236	CTGGAACATTGGGCCGACA	60.303	57.895	0.00	0.00	38.20	4.35
3073	6486	4.857679	AGACGAAGGAACCTACACTATCT	58.142	43.478	0.00	0.00	0.00	1.98
3220	6633	2.364970	CCCAAATCAGTGGCAGTGAAAA	59.635	45.455	27.33	6.88	37.34	2.29
3291	6733	2.622470	TGTTGCATGCTTGAAGTGCTTA	59.378	40.909	20.33	0.00	39.52	3.09
3302	6744	2.288334	TGAAGTGCTTAAAGTACGCGGA	60.288	45.455	12.47	0.00	35.89	5.54
3601	7045	2.159379	CGTTTCCATTGCTAAGGAAGGC	60.159	50.000	5.08	2.83	44.15	4.35
3623	7075	5.511545	GGCTCCTGTTTTCTCTCTTGTCTTA	60.512	44.000	0.00	0.00	0.00	2.10
3671	7129	1.468520	CTTGTACCGGGCAATGAACAG	59.531	52.381	6.32	0.00	0.00	3.16
3744	7204	0.965363	GTACCCAATGCCCCACAGTG	60.965	60.000	0.00	0.00	43.97	3.66
3812	7274	7.258441	TCTGTAGTACATAATGTGAGCTCAAC	58.742	38.462	20.19	13.28	0.00	3.18
3820	7366	6.719370	ACATAATGTGAGCTCAACCCTTTTTA	59.281	34.615	20.19	8.92	0.00	1.52
3829	7375	3.964688	CTCAACCCTTTTTACCCCTGTTT	59.035	43.478	0.00	0.00	0.00	2.83
3853	7401	4.224147	TGTATTTAGCCCAGCAACTGAGTA	59.776	41.667	0.00	0.00	32.44	2.59
3898	7446	4.457257	ACTGTTCTTCTCCATAAGCTTTGC	59.543	41.667	3.20	0.00	0.00	3.68
3905	7453	8.121305	TCTTCTCCATAAGCTTTGCAATTTTA	57.879	30.769	3.20	0.07	0.00	1.52
3932	7480	4.218635	TGTCTTGTAACTTGTTTGTTGCCA	59.781	37.500	0.00	0.00	32.78	4.92
3970	7519	4.826733	ACTGCAGAATGGTCACAATTTGTA	59.173	37.500	23.35	0.00	35.86	2.41
3978	7527	2.806244	GGTCACAATTTGTAGCACGACT	59.194	45.455	13.45	0.00	0.00	4.18
3997	7546	2.369860	ACTGCTGTCATGAACTGAAGGA	59.630	45.455	0.00	0.00	36.91	3.36
3998	7547	3.181451	ACTGCTGTCATGAACTGAAGGAA	60.181	43.478	0.00	0.00	36.91	3.36
3999	7548	3.405831	TGCTGTCATGAACTGAAGGAAG	58.594	45.455	0.00	0.00	35.07	3.46
4055	7611	7.169645	TGAAGATGTGCTTTGCTTATGAAAAAC	59.830	33.333	0.00	0.00	36.83	2.43
4060	7616	6.074409	TGTGCTTTGCTTATGAAAAACATTCG	60.074	34.615	0.00	0.00	40.07	3.34
4067	7623	5.569059	GCTTATGAAAAACATTCGGACACAG	59.431	40.000	0.00	0.00	40.07	3.66
4098	7654	4.194640	TGCTCTCTGGCATGTATTCTTTC	58.805	43.478	0.00	0.00	37.29	2.62
4198	7755	9.846248	ACAATTTCTGTGAGCATATAAAAACTC	57.154	29.630	0.00	0.00	36.69	3.01
4199	7756	9.003112	CAATTTCTGTGAGCATATAAAAACTCG	57.997	33.333	0.00	0.00	31.64	4.18
4200	7757	5.718649	TCTGTGAGCATATAAAAACTCGC	57.281	39.130	0.00	0.00	39.53	5.03
4201	7758	5.419542	TCTGTGAGCATATAAAAACTCGCT	58.580	37.500	0.00	0.00	39.73	4.93
4202	7759	5.291858	TCTGTGAGCATATAAAAACTCGCTG	59.708	40.000	0.00	0.00	39.73	5.18
4203	7760	4.935205	TGTGAGCATATAAAAACTCGCTGT	59.065	37.500	0.00	0.00	39.73	4.40
4204	7761	5.063438	TGTGAGCATATAAAAACTCGCTGTC	59.937	40.000	0.00	0.00	39.73	3.51
4205	7762	5.292101	GTGAGCATATAAAAACTCGCTGTCT	59.708	40.000	0.00	0.00	36.86	3.41
4206	7763	5.520288	TGAGCATATAAAAACTCGCTGTCTC	59.480	40.000	0.00	0.00	31.64	3.36
4207	7764	5.665459	AGCATATAAAAACTCGCTGTCTCT	58.335	37.500	0.00	0.00	0.00	3.10
4208	7765	6.806751	AGCATATAAAAACTCGCTGTCTCTA	58.193	36.000	0.00	0.00	0.00	2.43
4209	7766	6.920758	AGCATATAAAAACTCGCTGTCTCTAG	59.079	38.462	0.00	0.00	0.00	2.43
4210	7767	6.144724	GCATATAAAAACTCGCTGTCTCTAGG	59.855	42.308	0.00	0.00	0.00	3.02
4211	7768	5.662674	ATAAAAACTCGCTGTCTCTAGGT	57.337	39.130	0.00	0.00	0.00	3.08
4212	7769	3.305398	AAAACTCGCTGTCTCTAGGTG	57.695	47.619	0.00	0.00	0.00	4.00
4213	7770	1.178276	AACTCGCTGTCTCTAGGTGG	58.822	55.000	0.00	0.00	0.00	4.61
4214	7771	0.328592	ACTCGCTGTCTCTAGGTGGA	59.671	55.000	0.00	0.00	0.00	4.02
4215	7772	1.064314	ACTCGCTGTCTCTAGGTGGAT	60.064	52.381	0.00	0.00	0.00	3.41
4216	7773	1.336440	CTCGCTGTCTCTAGGTGGATG	59.664	57.143	0.00	0.00	0.00	3.51
4217	7774	1.107114	CGCTGTCTCTAGGTGGATGT	58.893	55.000	0.00	0.00	0.00	3.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
212	215	8.033038	TGTCAATAGTTTACTTCGAGTTATGCT	58.967	33.333	0.00	0.00	0.00	3.79
223	226	8.918202	TCTTGGTCAATGTCAATAGTTTACTT	57.082	30.769	0.00	0.00	0.00	2.24
258	261	4.443621	GGAGTACTCAATTAGTTGCTCCC	58.556	47.826	23.91	0.00	44.77	4.30
334	340	4.479993	GGCGGTGGCTGAGAGCAT	62.480	66.667	0.00	0.00	44.75	3.79
396	406	5.410439	AGGCGAAAACACGTACAGAAATATT	59.590	36.000	0.00	0.00	35.59	1.28
399	409	3.135994	AGGCGAAAACACGTACAGAAAT	58.864	40.909	0.00	0.00	35.59	2.17
418	428	9.483916	AAACCGGAAACATTTTTATCTAAAAGG	57.516	29.630	9.46	0.00	41.86	3.11
531	3873	5.599999	AGAAGTAAATATGTGCCTCTCGT	57.400	39.130	0.00	0.00	0.00	4.18
613	3956	1.204792	GCGGAACAAAACAAACGCAT	58.795	45.000	0.00	0.00	45.57	4.73
614	3957	1.134530	CGCGGAACAAAACAAACGCA	61.135	50.000	0.00	0.00	46.47	5.24
615	3958	0.862283	TCGCGGAACAAAACAAACGC	60.862	50.000	6.13	0.00	43.15	4.84
616	3959	1.109296	CTCGCGGAACAAAACAAACG	58.891	50.000	6.13	0.00	0.00	3.60
621	3966	1.070776	GTGTCTCTCGCGGAACAAAAC	60.071	52.381	6.13	0.00	0.00	2.43
642	3987	4.387862	CGTGCCTCTACGACAAGTAAATTT	59.612	41.667	0.00	0.00	46.46	1.82
652	3997	1.666311	GCATATCCGTGCCTCTACGAC	60.666	57.143	0.00	0.00	46.46	4.34
1811	5209	1.202510	CGAAGCAATCTCCTCCTCCTG	60.203	57.143	0.00	0.00	0.00	3.86
2050	5448	3.389687	ACAGCGCGTATTTCATTCTTG	57.610	42.857	8.43	0.00	0.00	3.02
2206	5604	0.178995	TGCTGGAACCTGCAACATCA	60.179	50.000	19.90	0.00	45.40	3.07
2229	5627	3.933861	TCCTCTTTCCCTTCCTATTGC	57.066	47.619	0.00	0.00	0.00	3.56
2255	5662	3.003480	GCAAGTCACAGTTACCTCCATC	58.997	50.000	0.00	0.00	0.00	3.51
2512	5919	2.171448	GCATGGTAGGATCTCAACTGGT	59.829	50.000	0.00	0.00	0.00	4.00
2533	5940	2.089980	CCTTTCTTCAGAGGTGCATGG	58.910	52.381	0.00	0.00	0.00	3.66
2643	6050	1.453379	GCATCAGAGCTGCCACCAT	60.453	57.895	0.00	0.00	33.44	3.55
2669	6076	6.605471	TTCTACTTTCTGCTCAAGTGGATA	57.395	37.500	9.11	1.49	40.30	2.59
2697	6104	0.471617	CGGATTTCCTCCTGCCTCAT	59.528	55.000	0.00	0.00	42.47	2.90
2750	6160	1.145819	GCTCCTGATCCTCCTGTGC	59.854	63.158	0.00	0.00	0.00	4.57
2791	6204	8.581578	TCTATGTCGCTGGTGTCATTATTTATA	58.418	33.333	0.13	0.00	0.00	0.98
2951	6364	1.664333	CCGCTTGCCGCAAAACATT	60.664	52.632	7.33	0.00	39.08	2.71
2957	6370	2.749839	AATAGCCGCTTGCCGCAA	60.750	55.556	5.52	5.52	42.71	4.85
3033	6446	0.731417	CTTACCTCGACGTCGACCAT	59.269	55.000	34.97	23.99	44.22	3.55
3073	6486	7.642669	CAGTAACTTTCTTCTTCAGCATTGAA	58.357	34.615	0.00	0.00	40.92	2.69
3251	6664	2.680841	ACAGCACAGCAAAACGAAACTA	59.319	40.909	0.00	0.00	0.00	2.24
3291	6733	0.032952	TTCAGTGCTCCGCGTACTTT	59.967	50.000	4.92	0.00	36.35	2.66
3601	7045	7.158021	ACATAAGACAAGAGAGAAAACAGGAG	58.842	38.462	0.00	0.00	0.00	3.69
3623	7075	5.539955	AGGCAAAACCAAGATAACAGAACAT	59.460	36.000	0.00	0.00	43.14	2.71
3671	7129	6.699642	GCAGAAGATACAACCTAGAGTCAATC	59.300	42.308	0.00	0.00	0.00	2.67
3758	7218	1.000060	ACCACATTGCACACAAGATGC	60.000	47.619	0.00	0.00	43.68	3.91
3804	7266	2.168496	GGGGTAAAAAGGGTTGAGCTC	58.832	52.381	6.82	6.82	0.00	4.09
3812	7274	6.428083	AATACAAAACAGGGGTAAAAAGGG	57.572	37.500	0.00	0.00	0.00	3.95
3820	7366	3.181416	TGGGCTAAATACAAAACAGGGGT	60.181	43.478	0.00	0.00	0.00	4.95
3829	7375	4.009675	CTCAGTTGCTGGGCTAAATACAA	58.990	43.478	0.00	0.00	31.51	2.41
3853	7401	6.317140	CAGTGAGGCACAACATATACTCAAAT	59.683	38.462	0.00	0.00	36.80	2.32
3932	7480	1.005097	TGCAGTGATGCCCAGAAATCT	59.995	47.619	0.00	0.00	0.00	2.40
3946	7494	3.928727	AATTGTGACCATTCTGCAGTG	57.071	42.857	14.67	5.40	0.00	3.66
3978	7527	3.071457	TCTTCCTTCAGTTCATGACAGCA	59.929	43.478	0.00	0.00	37.77	4.41
3997	7546	1.378250	GCAGCCATGGTGAGCTCTT	60.378	57.895	16.19	0.00	37.18	2.85
3998	7547	1.849975	AAGCAGCCATGGTGAGCTCT	61.850	55.000	22.17	12.92	37.18	4.09
3999	7548	0.107508	TAAGCAGCCATGGTGAGCTC	60.108	55.000	22.17	6.82	37.18	4.09
4055	7611	4.616802	GCAACAAAATACTGTGTCCGAATG	59.383	41.667	0.00	0.00	0.00	2.67
4060	7616	4.757149	AGAGAGCAACAAAATACTGTGTCC	59.243	41.667	0.00	0.00	0.00	4.02
4098	7654	7.173032	ACAAAGAAAGTATAGTACAAAGGGGG	58.827	38.462	0.00	0.00	0.00	5.40
4129	7685	3.903090	TGCCCAGAAATCCAACAAAGAAT	59.097	39.130	0.00	0.00	0.00	2.40
4183	7740	5.751028	AGAGACAGCGAGTTTTTATATGCTC	59.249	40.000	0.00	0.00	0.00	4.26
4184	7741	5.665459	AGAGACAGCGAGTTTTTATATGCT	58.335	37.500	0.00	0.00	0.00	3.79
4185	7742	5.975410	AGAGACAGCGAGTTTTTATATGC	57.025	39.130	0.00	0.00	0.00	3.14
4186	7743	7.168302	CACCTAGAGACAGCGAGTTTTTATATG	59.832	40.741	0.00	0.00	0.00	1.78
4187	7744	7.203910	CACCTAGAGACAGCGAGTTTTTATAT	58.796	38.462	0.00	0.00	0.00	0.86
4188	7745	6.405508	CCACCTAGAGACAGCGAGTTTTTATA	60.406	42.308	0.00	0.00	0.00	0.98
4189	7746	5.411781	CACCTAGAGACAGCGAGTTTTTAT	58.588	41.667	0.00	0.00	0.00	1.40
4190	7747	4.321750	CCACCTAGAGACAGCGAGTTTTTA	60.322	45.833	0.00	0.00	0.00	1.52
4191	7748	3.555168	CCACCTAGAGACAGCGAGTTTTT	60.555	47.826	0.00	0.00	0.00	1.94
4192	7749	2.028930	CCACCTAGAGACAGCGAGTTTT	60.029	50.000	0.00	0.00	0.00	2.43
4193	7750	1.546476	CCACCTAGAGACAGCGAGTTT	59.454	52.381	0.00	0.00	0.00	2.66
4194	7751	1.178276	CCACCTAGAGACAGCGAGTT	58.822	55.000	0.00	0.00	0.00	3.01
4195	7752	0.328592	TCCACCTAGAGACAGCGAGT	59.671	55.000	0.00	0.00	0.00	4.18
4196	7753	1.336440	CATCCACCTAGAGACAGCGAG	59.664	57.143	0.00	0.00	0.00	5.03
4197	7754	1.341089	ACATCCACCTAGAGACAGCGA	60.341	52.381	0.00	0.00	0.00	4.93
4198	7755	1.107114	ACATCCACCTAGAGACAGCG	58.893	55.000	0.00	0.00	0.00	5.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.