Multiple sequence alignment - TraesCS3B01G510800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G510800 chr3B 100.000 2489 0 0 1 2489 754967974 754965486 0.000000e+00 4597
1 TraesCS3B01G510800 chr3B 96.998 866 17 4 856 1715 588460160 588461022 0.000000e+00 1447
2 TraesCS3B01G510800 chr3B 95.133 863 33 4 859 1715 523565947 523566806 0.000000e+00 1352
3 TraesCS3B01G510800 chr3B 98.797 582 7 0 1737 2318 588462431 588463012 0.000000e+00 1037
4 TraesCS3B01G510800 chr3B 96.747 584 16 2 1737 2318 159620075 159619493 0.000000e+00 970
5 TraesCS3B01G510800 chr3B 93.525 278 18 0 1 278 756196435 756196712 4.950000e-112 414
6 TraesCS3B01G510800 chr3B 86.747 332 7 11 409 704 588459533 588459863 3.970000e-88 335
7 TraesCS3B01G510800 chr3B 81.707 164 15 12 411 569 159773547 159773394 3.360000e-24 122
8 TraesCS3B01G510800 chr5B 96.682 874 20 6 776 1640 486987118 486986245 0.000000e+00 1445
9 TraesCS3B01G510800 chr5B 97.766 582 13 0 1737 2318 486985213 486984632 0.000000e+00 1003
10 TraesCS3B01G510800 chr5B 95.174 373 12 2 411 783 486987949 486987583 3.570000e-163 584
11 TraesCS3B01G510800 chr1A 95.386 867 31 4 855 1715 561084989 561085852 0.000000e+00 1371
12 TraesCS3B01G510800 chr1B 95.537 829 29 3 892 1715 26820155 26819330 0.000000e+00 1319
13 TraesCS3B01G510800 chr1B 94.934 829 34 4 892 1715 353336471 353337296 0.000000e+00 1291
14 TraesCS3B01G510800 chr1B 81.560 141 17 9 411 547 26820685 26820550 9.410000e-20 108
15 TraesCS3B01G510800 chr1B 80.667 150 20 8 406 549 353335620 353335766 9.410000e-20 108
16 TraesCS3B01G510800 chr3D 94.731 854 30 6 868 1715 14419800 14420644 0.000000e+00 1314
17 TraesCS3B01G510800 chr3D 91.803 305 21 2 1 304 567233537 567233838 2.960000e-114 422
18 TraesCS3B01G510800 chr3D 93.478 276 18 0 1 276 569523019 569522744 6.410000e-111 411
19 TraesCS3B01G510800 chr7D 94.269 855 39 5 867 1714 7866907 7866056 0.000000e+00 1299
20 TraesCS3B01G510800 chr7D 96.918 584 16 1 1737 2318 207288821 207288238 0.000000e+00 977
21 TraesCS3B01G510800 chr7D 96.747 584 17 1 1737 2318 7864653 7864070 0.000000e+00 972
22 TraesCS3B01G510800 chr7D 83.537 164 11 13 411 569 207291921 207291769 3.340000e-29 139
23 TraesCS3B01G510800 chr2B 94.656 842 34 5 879 1715 5431574 5432409 0.000000e+00 1295
24 TraesCS3B01G510800 chr2A 97.089 584 15 1 1737 2318 30026842 30026259 0.000000e+00 983
25 TraesCS3B01G510800 chr2A 96.747 584 17 2 1737 2318 772724034 772724617 0.000000e+00 972
26 TraesCS3B01G510800 chr7A 97.084 583 16 1 1737 2318 154557153 154556571 0.000000e+00 981
27 TraesCS3B01G510800 chr7A 79.286 280 29 19 410 675 154560338 154560074 4.260000e-38 169
28 TraesCS3B01G510800 chr6B 96.918 584 16 1 1737 2318 584007560 584008143 0.000000e+00 977
29 TraesCS3B01G510800 chr6B 88.421 190 7 4 408 597 620998969 620999143 5.390000e-52 215
30 TraesCS3B01G510800 chr3A 86.052 423 40 12 1 410 701851317 701850901 1.060000e-118 436
31 TraesCS3B01G510800 chr3A 94.208 259 15 0 1 259 700562904 700562646 1.790000e-106 396
32 TraesCS3B01G510800 chrUn 91.803 305 21 2 1 304 255061254 255061555 2.960000e-114 422
33 TraesCS3B01G510800 chrUn 91.803 305 21 2 1 304 269238260 269238561 2.960000e-114 422
34 TraesCS3B01G510800 chrUn 82.609 161 16 7 411 569 1829686 1829536 5.590000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G510800 chr3B 754965486 754967974 2488 True 4597.000000 4597 100.000000 1 2489 1 chr3B.!!$R3 2488
1 TraesCS3B01G510800 chr3B 523565947 523566806 859 False 1352.000000 1352 95.133000 859 1715 1 chr3B.!!$F1 856
2 TraesCS3B01G510800 chr3B 159619493 159620075 582 True 970.000000 970 96.747000 1737 2318 1 chr3B.!!$R1 581
3 TraesCS3B01G510800 chr3B 588459533 588463012 3479 False 939.666667 1447 94.180667 409 2318 3 chr3B.!!$F3 1909
4 TraesCS3B01G510800 chr5B 486984632 486987949 3317 True 1010.666667 1445 96.540667 411 2318 3 chr5B.!!$R1 1907
5 TraesCS3B01G510800 chr1A 561084989 561085852 863 False 1371.000000 1371 95.386000 855 1715 1 chr1A.!!$F1 860
6 TraesCS3B01G510800 chr1B 26819330 26820685 1355 True 713.500000 1319 88.548500 411 1715 2 chr1B.!!$R1 1304
7 TraesCS3B01G510800 chr1B 353335620 353337296 1676 False 699.500000 1291 87.800500 406 1715 2 chr1B.!!$F1 1309
8 TraesCS3B01G510800 chr3D 14419800 14420644 844 False 1314.000000 1314 94.731000 868 1715 1 chr3D.!!$F1 847
9 TraesCS3B01G510800 chr7D 7864070 7866907 2837 True 1135.500000 1299 95.508000 867 2318 2 chr7D.!!$R1 1451
10 TraesCS3B01G510800 chr7D 207288238 207291921 3683 True 558.000000 977 90.227500 411 2318 2 chr7D.!!$R2 1907
11 TraesCS3B01G510800 chr2B 5431574 5432409 835 False 1295.000000 1295 94.656000 879 1715 1 chr2B.!!$F1 836
12 TraesCS3B01G510800 chr2A 30026259 30026842 583 True 983.000000 983 97.089000 1737 2318 1 chr2A.!!$R1 581
13 TraesCS3B01G510800 chr2A 772724034 772724617 583 False 972.000000 972 96.747000 1737 2318 1 chr2A.!!$F1 581
14 TraesCS3B01G510800 chr7A 154556571 154560338 3767 True 575.000000 981 88.185000 410 2318 2 chr7A.!!$R1 1908
15 TraesCS3B01G510800 chr6B 584007560 584008143 583 False 977.000000 977 96.918000 1737 2318 1 chr6B.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.031314 CGATGTCCATGGAGACGAGG 59.969 60.000 16.81 0.09 39.77 4.63 F
335 336 0.103208 GCAGCTAGCTAGGCGAAGAA 59.897 55.000 18.86 0.00 41.15 2.52 F
336 337 1.270041 GCAGCTAGCTAGGCGAAGAAT 60.270 52.381 18.86 0.00 41.15 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1156 2736 0.887247 TGCACTAACGCCAATTGCAT 59.113 45.000 0.0 0.0 38.25 3.96 R
1207 2787 1.606601 GGGTTGGGGTTGCTTCTCC 60.607 63.158 0.0 0.0 0.00 3.71 R
1735 3324 1.895131 CTTTGTAGCAAGCCCAACCAT 59.105 47.619 0.0 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.914289 CATGGAGGGGAGCCAGTC 59.086 66.667 0.00 0.00 39.11 3.51
18 19 2.367512 ATGGAGGGGAGCCAGTCC 60.368 66.667 0.00 0.00 46.10 3.85
19 20 2.965927 ATGGAGGGGAGCCAGTCCT 61.966 63.158 7.63 0.00 46.06 3.85
25 26 2.043852 GGAGCCAGTCCTCCGAGA 60.044 66.667 0.00 0.00 41.79 4.04
26 27 2.124693 GGAGCCAGTCCTCCGAGAG 61.125 68.421 0.00 0.00 41.79 3.20
27 28 1.379309 GAGCCAGTCCTCCGAGAGT 60.379 63.158 0.00 0.00 0.00 3.24
28 29 1.662438 GAGCCAGTCCTCCGAGAGTG 61.662 65.000 0.00 0.00 37.02 3.51
29 30 1.979693 GCCAGTCCTCCGAGAGTGT 60.980 63.158 0.00 0.00 35.75 3.55
30 31 1.886585 CCAGTCCTCCGAGAGTGTG 59.113 63.158 0.00 0.00 35.75 3.82
31 32 1.214062 CAGTCCTCCGAGAGTGTGC 59.786 63.158 0.00 0.00 33.33 4.57
32 33 1.979693 AGTCCTCCGAGAGTGTGCC 60.980 63.158 0.00 0.00 0.00 5.01
33 34 3.062466 TCCTCCGAGAGTGTGCCG 61.062 66.667 0.00 0.00 0.00 5.69
34 35 3.062466 CCTCCGAGAGTGTGCCGA 61.062 66.667 0.00 0.00 0.00 5.54
35 36 2.179517 CTCCGAGAGTGTGCCGAC 59.820 66.667 0.00 0.00 0.00 4.79
36 37 3.669036 CTCCGAGAGTGTGCCGACG 62.669 68.421 0.00 0.00 0.00 5.12
37 38 4.039357 CCGAGAGTGTGCCGACGT 62.039 66.667 0.00 0.00 0.00 4.34
38 39 2.050351 CGAGAGTGTGCCGACGTT 60.050 61.111 0.00 0.00 0.00 3.99
39 40 2.365068 CGAGAGTGTGCCGACGTTG 61.365 63.158 0.00 0.00 0.00 4.10
40 41 1.007734 GAGAGTGTGCCGACGTTGA 60.008 57.895 3.74 0.00 0.00 3.18
41 42 0.388649 GAGAGTGTGCCGACGTTGAT 60.389 55.000 3.74 0.00 0.00 2.57
42 43 0.667487 AGAGTGTGCCGACGTTGATG 60.667 55.000 3.74 0.00 0.00 3.07
43 44 0.944311 GAGTGTGCCGACGTTGATGT 60.944 55.000 3.74 0.00 0.00 3.06
44 45 0.315886 AGTGTGCCGACGTTGATGTA 59.684 50.000 3.74 0.00 0.00 2.29
45 46 0.713883 GTGTGCCGACGTTGATGTAG 59.286 55.000 3.74 0.00 0.00 2.74
46 47 0.599060 TGTGCCGACGTTGATGTAGA 59.401 50.000 3.74 0.00 0.00 2.59
47 48 0.989890 GTGCCGACGTTGATGTAGAC 59.010 55.000 3.74 0.00 0.00 2.59
48 49 0.885879 TGCCGACGTTGATGTAGACT 59.114 50.000 3.74 0.00 0.00 3.24
49 50 1.269166 GCCGACGTTGATGTAGACTG 58.731 55.000 3.74 0.00 0.00 3.51
50 51 1.269166 CCGACGTTGATGTAGACTGC 58.731 55.000 3.74 0.00 0.00 4.40
51 52 0.907837 CGACGTTGATGTAGACTGCG 59.092 55.000 0.00 0.00 0.00 5.18
52 53 1.728179 CGACGTTGATGTAGACTGCGT 60.728 52.381 0.00 0.00 0.00 5.24
53 54 1.912110 GACGTTGATGTAGACTGCGTC 59.088 52.381 5.86 5.86 39.91 5.19
54 55 0.907837 CGTTGATGTAGACTGCGTCG 59.092 55.000 8.07 0.00 37.67 5.12
55 56 0.640768 GTTGATGTAGACTGCGTCGC 59.359 55.000 11.10 11.10 37.67 5.19
56 57 0.242555 TTGATGTAGACTGCGTCGCA 59.757 50.000 20.44 20.44 37.67 5.10
71 72 4.179579 GCAGCGCGGGGTGAAATC 62.180 66.667 32.39 12.90 44.37 2.17
72 73 3.864686 CAGCGCGGGGTGAAATCG 61.865 66.667 25.53 0.00 44.37 3.34
76 77 4.104183 GCGGGGTGAAATCGGGGA 62.104 66.667 0.00 0.00 0.00 4.81
77 78 2.915869 CGGGGTGAAATCGGGGAT 59.084 61.111 0.00 0.00 0.00 3.85
78 79 1.227853 CGGGGTGAAATCGGGGATC 60.228 63.158 0.00 0.00 0.00 3.36
79 80 1.696097 CGGGGTGAAATCGGGGATCT 61.696 60.000 0.00 0.00 0.00 2.75
80 81 0.108774 GGGGTGAAATCGGGGATCTC 59.891 60.000 0.00 0.00 0.00 2.75
81 82 0.249911 GGGTGAAATCGGGGATCTCG 60.250 60.000 0.00 0.00 0.00 4.04
82 83 0.880718 GGTGAAATCGGGGATCTCGC 60.881 60.000 0.00 0.00 0.00 5.03
90 91 4.292178 GGGATCTCGCGGAGGCAG 62.292 72.222 6.13 0.00 39.92 4.85
91 92 3.532155 GGATCTCGCGGAGGCAGT 61.532 66.667 6.13 0.00 39.92 4.40
92 93 2.279120 GATCTCGCGGAGGCAGTG 60.279 66.667 6.13 0.00 39.92 3.66
93 94 3.781770 GATCTCGCGGAGGCAGTGG 62.782 68.421 6.13 0.00 39.92 4.00
95 96 4.504916 CTCGCGGAGGCAGTGGAG 62.505 72.222 6.13 0.00 39.92 3.86
98 99 4.479993 GCGGAGGCAGTGGAGCAT 62.480 66.667 0.00 0.00 39.62 3.79
99 100 2.513204 CGGAGGCAGTGGAGCATG 60.513 66.667 0.00 0.00 35.83 4.06
100 101 2.124403 GGAGGCAGTGGAGCATGG 60.124 66.667 0.00 0.00 35.83 3.66
101 102 2.827642 GAGGCAGTGGAGCATGGC 60.828 66.667 0.00 0.00 41.98 4.40
102 103 4.437587 AGGCAGTGGAGCATGGCC 62.438 66.667 0.00 0.00 42.61 5.36
146 147 2.824041 GTTGGCGGCGATGTCCAT 60.824 61.111 12.98 0.00 0.00 3.41
147 148 2.823593 TTGGCGGCGATGTCCATG 60.824 61.111 12.98 0.00 0.00 3.66
148 149 4.854924 TGGCGGCGATGTCCATGG 62.855 66.667 12.98 4.97 0.00 3.66
149 150 4.545706 GGCGGCGATGTCCATGGA 62.546 66.667 11.44 11.44 0.00 3.41
150 151 2.969238 GCGGCGATGTCCATGGAG 60.969 66.667 16.81 4.26 0.00 3.86
151 152 2.814604 CGGCGATGTCCATGGAGA 59.185 61.111 16.81 15.81 0.00 3.71
152 153 1.592669 CGGCGATGTCCATGGAGAC 60.593 63.158 16.81 4.30 37.28 3.36
153 154 1.592669 GGCGATGTCCATGGAGACG 60.593 63.158 16.81 20.57 39.77 4.18
154 155 1.437573 GCGATGTCCATGGAGACGA 59.562 57.895 27.70 10.99 39.77 4.20
155 156 0.596083 GCGATGTCCATGGAGACGAG 60.596 60.000 27.70 17.80 39.77 4.18
156 157 0.031314 CGATGTCCATGGAGACGAGG 59.969 60.000 16.81 0.09 39.77 4.63
157 158 1.115467 GATGTCCATGGAGACGAGGT 58.885 55.000 16.81 0.00 39.77 3.85
158 159 1.482593 GATGTCCATGGAGACGAGGTT 59.517 52.381 16.81 0.00 39.77 3.50
159 160 0.608130 TGTCCATGGAGACGAGGTTG 59.392 55.000 16.81 0.00 39.77 3.77
160 161 0.108138 GTCCATGGAGACGAGGTTGG 60.108 60.000 16.81 0.00 0.00 3.77
161 162 0.544357 TCCATGGAGACGAGGTTGGT 60.544 55.000 11.44 0.00 0.00 3.67
162 163 0.391661 CCATGGAGACGAGGTTGGTG 60.392 60.000 5.56 0.00 0.00 4.17
163 164 0.608130 CATGGAGACGAGGTTGGTGA 59.392 55.000 0.00 0.00 0.00 4.02
164 165 1.208052 CATGGAGACGAGGTTGGTGAT 59.792 52.381 0.00 0.00 0.00 3.06
165 166 0.608130 TGGAGACGAGGTTGGTGATG 59.392 55.000 0.00 0.00 0.00 3.07
166 167 0.741221 GGAGACGAGGTTGGTGATGC 60.741 60.000 0.00 0.00 0.00 3.91
167 168 1.078759 GAGACGAGGTTGGTGATGCG 61.079 60.000 0.00 0.00 0.00 4.73
168 169 2.740714 GACGAGGTTGGTGATGCGC 61.741 63.158 0.00 0.00 0.00 6.09
169 170 2.434884 CGAGGTTGGTGATGCGCT 60.435 61.111 9.73 0.00 0.00 5.92
170 171 2.743752 CGAGGTTGGTGATGCGCTG 61.744 63.158 9.73 0.00 0.00 5.18
171 172 3.044059 GAGGTTGGTGATGCGCTGC 62.044 63.158 9.73 0.13 0.00 5.25
172 173 3.364441 GGTTGGTGATGCGCTGCA 61.364 61.111 9.73 3.40 44.86 4.41
173 174 2.126734 GTTGGTGATGCGCTGCAC 60.127 61.111 20.13 20.13 43.04 4.57
243 244 4.436998 CACCACGCCTCCGTCCTC 62.437 72.222 0.00 0.00 46.39 3.71
244 245 4.680537 ACCACGCCTCCGTCCTCT 62.681 66.667 0.00 0.00 46.39 3.69
245 246 3.827898 CCACGCCTCCGTCCTCTC 61.828 72.222 0.00 0.00 46.39 3.20
246 247 3.062466 CACGCCTCCGTCCTCTCA 61.062 66.667 0.00 0.00 46.39 3.27
247 248 2.043852 ACGCCTCCGTCCTCTCAT 60.044 61.111 0.00 0.00 46.39 2.90
248 249 2.122167 ACGCCTCCGTCCTCTCATC 61.122 63.158 0.00 0.00 46.39 2.92
249 250 2.725008 GCCTCCGTCCTCTCATCG 59.275 66.667 0.00 0.00 0.00 3.84
250 251 2.122167 GCCTCCGTCCTCTCATCGT 61.122 63.158 0.00 0.00 0.00 3.73
251 252 2.026522 CCTCCGTCCTCTCATCGTC 58.973 63.158 0.00 0.00 0.00 4.20
252 253 1.448922 CCTCCGTCCTCTCATCGTCC 61.449 65.000 0.00 0.00 0.00 4.79
253 254 0.748367 CTCCGTCCTCTCATCGTCCA 60.748 60.000 0.00 0.00 0.00 4.02
254 255 0.106669 TCCGTCCTCTCATCGTCCAT 60.107 55.000 0.00 0.00 0.00 3.41
255 256 1.142262 TCCGTCCTCTCATCGTCCATA 59.858 52.381 0.00 0.00 0.00 2.74
256 257 1.267261 CCGTCCTCTCATCGTCCATAC 59.733 57.143 0.00 0.00 0.00 2.39
257 258 1.267261 CGTCCTCTCATCGTCCATACC 59.733 57.143 0.00 0.00 0.00 2.73
258 259 1.267261 GTCCTCTCATCGTCCATACCG 59.733 57.143 0.00 0.00 0.00 4.02
259 260 1.142262 TCCTCTCATCGTCCATACCGA 59.858 52.381 0.00 0.00 38.89 4.69
260 261 1.267261 CCTCTCATCGTCCATACCGAC 59.733 57.143 0.00 0.00 37.12 4.79
266 267 2.025727 GTCCATACCGACGGCGAG 59.974 66.667 15.16 4.50 40.82 5.03
267 268 3.214123 TCCATACCGACGGCGAGG 61.214 66.667 15.16 19.13 40.82 4.63
268 269 4.280494 CCATACCGACGGCGAGGG 62.280 72.222 15.16 20.80 40.82 4.30
269 270 3.524606 CATACCGACGGCGAGGGT 61.525 66.667 24.57 24.57 40.82 4.34
270 271 3.524606 ATACCGACGGCGAGGGTG 61.525 66.667 27.69 0.00 40.82 4.61
302 303 3.727258 CAGGCGGTGGGGGATTGA 61.727 66.667 0.00 0.00 0.00 2.57
303 304 2.696125 AGGCGGTGGGGGATTGAT 60.696 61.111 0.00 0.00 0.00 2.57
304 305 2.519302 GGCGGTGGGGGATTGATG 60.519 66.667 0.00 0.00 0.00 3.07
305 306 3.219198 GCGGTGGGGGATTGATGC 61.219 66.667 0.00 0.00 0.00 3.91
306 307 2.901840 CGGTGGGGGATTGATGCG 60.902 66.667 0.00 0.00 0.00 4.73
307 308 2.519302 GGTGGGGGATTGATGCGG 60.519 66.667 0.00 0.00 0.00 5.69
308 309 3.219198 GTGGGGGATTGATGCGGC 61.219 66.667 0.00 0.00 0.00 6.53
309 310 4.873810 TGGGGGATTGATGCGGCG 62.874 66.667 0.51 0.51 0.00 6.46
313 314 4.875713 GGATTGATGCGGCGGGGT 62.876 66.667 9.78 0.00 0.00 4.95
314 315 2.828549 GATTGATGCGGCGGGGTT 60.829 61.111 9.78 0.00 0.00 4.11
315 316 3.124798 GATTGATGCGGCGGGGTTG 62.125 63.158 9.78 0.00 0.00 3.77
325 326 4.101448 CGGGGTTGGCAGCTAGCT 62.101 66.667 12.68 12.68 44.79 3.32
326 327 2.731571 CGGGGTTGGCAGCTAGCTA 61.732 63.158 18.86 0.00 44.79 3.32
327 328 1.147153 GGGGTTGGCAGCTAGCTAG 59.853 63.158 18.86 16.84 44.79 3.42
328 329 1.147153 GGGTTGGCAGCTAGCTAGG 59.853 63.158 18.86 7.37 44.79 3.02
329 330 1.524849 GGTTGGCAGCTAGCTAGGC 60.525 63.158 18.86 22.30 44.79 3.93
330 331 1.884926 GTTGGCAGCTAGCTAGGCG 60.885 63.158 18.86 6.14 44.79 5.52
331 332 2.058001 TTGGCAGCTAGCTAGGCGA 61.058 57.895 18.86 19.42 44.79 5.54
332 333 1.613317 TTGGCAGCTAGCTAGGCGAA 61.613 55.000 18.86 17.71 44.79 4.70
333 334 1.300542 GGCAGCTAGCTAGGCGAAG 60.301 63.158 18.86 4.09 44.79 3.79
334 335 1.736586 GCAGCTAGCTAGGCGAAGA 59.263 57.895 18.86 0.00 41.15 2.87
335 336 0.103208 GCAGCTAGCTAGGCGAAGAA 59.897 55.000 18.86 0.00 41.15 2.52
336 337 1.270041 GCAGCTAGCTAGGCGAAGAAT 60.270 52.381 18.86 0.00 41.15 2.40
337 338 2.402305 CAGCTAGCTAGGCGAAGAATG 58.598 52.381 18.86 0.00 34.52 2.67
338 339 1.342819 AGCTAGCTAGGCGAAGAATGG 59.657 52.381 17.69 0.00 34.52 3.16
339 340 1.341531 GCTAGCTAGGCGAAGAATGGA 59.658 52.381 22.10 0.00 0.00 3.41
340 341 2.028567 GCTAGCTAGGCGAAGAATGGAT 60.029 50.000 22.10 0.00 0.00 3.41
341 342 2.540265 AGCTAGGCGAAGAATGGATG 57.460 50.000 0.00 0.00 0.00 3.51
342 343 1.765314 AGCTAGGCGAAGAATGGATGT 59.235 47.619 0.00 0.00 0.00 3.06
343 344 2.171448 AGCTAGGCGAAGAATGGATGTT 59.829 45.455 0.00 0.00 0.00 2.71
344 345 2.945668 GCTAGGCGAAGAATGGATGTTT 59.054 45.455 0.00 0.00 0.00 2.83
345 346 3.002759 GCTAGGCGAAGAATGGATGTTTC 59.997 47.826 0.00 0.00 0.00 2.78
346 347 3.071874 AGGCGAAGAATGGATGTTTCA 57.928 42.857 0.00 0.00 0.00 2.69
347 348 3.012518 AGGCGAAGAATGGATGTTTCAG 58.987 45.455 0.00 0.00 0.00 3.02
348 349 2.749621 GGCGAAGAATGGATGTTTCAGT 59.250 45.455 0.00 0.00 0.00 3.41
349 350 3.191371 GGCGAAGAATGGATGTTTCAGTT 59.809 43.478 0.00 0.00 0.00 3.16
350 351 4.321230 GGCGAAGAATGGATGTTTCAGTTT 60.321 41.667 0.00 0.00 0.00 2.66
351 352 4.618489 GCGAAGAATGGATGTTTCAGTTTG 59.382 41.667 0.00 0.00 0.00 2.93
352 353 5.156355 CGAAGAATGGATGTTTCAGTTTGG 58.844 41.667 0.00 0.00 0.00 3.28
353 354 4.525912 AGAATGGATGTTTCAGTTTGGC 57.474 40.909 0.00 0.00 0.00 4.52
354 355 3.259123 AGAATGGATGTTTCAGTTTGGCC 59.741 43.478 0.00 0.00 0.00 5.36
355 356 2.079170 TGGATGTTTCAGTTTGGCCA 57.921 45.000 0.00 0.00 0.00 5.36
356 357 1.686052 TGGATGTTTCAGTTTGGCCAC 59.314 47.619 3.88 0.00 0.00 5.01
357 358 1.963515 GGATGTTTCAGTTTGGCCACT 59.036 47.619 3.88 0.00 0.00 4.00
358 359 2.365293 GGATGTTTCAGTTTGGCCACTT 59.635 45.455 3.88 0.00 0.00 3.16
359 360 3.572255 GGATGTTTCAGTTTGGCCACTTA 59.428 43.478 3.88 0.00 0.00 2.24
360 361 4.220602 GGATGTTTCAGTTTGGCCACTTAT 59.779 41.667 3.88 0.00 0.00 1.73
361 362 5.417580 GGATGTTTCAGTTTGGCCACTTATA 59.582 40.000 3.88 0.00 0.00 0.98
362 363 6.096846 GGATGTTTCAGTTTGGCCACTTATAT 59.903 38.462 3.88 0.00 0.00 0.86
363 364 6.909550 TGTTTCAGTTTGGCCACTTATATT 57.090 33.333 3.88 0.00 0.00 1.28
364 365 7.296628 TGTTTCAGTTTGGCCACTTATATTT 57.703 32.000 3.88 0.00 0.00 1.40
365 366 7.731054 TGTTTCAGTTTGGCCACTTATATTTT 58.269 30.769 3.88 0.00 0.00 1.82
366 367 8.207545 TGTTTCAGTTTGGCCACTTATATTTTT 58.792 29.630 3.88 0.00 0.00 1.94
388 389 7.769272 TTTTTACCTGAAGTTGCATTTTCTG 57.231 32.000 10.81 10.02 0.00 3.02
389 390 6.707440 TTTACCTGAAGTTGCATTTTCTGA 57.293 33.333 14.89 0.00 0.00 3.27
390 391 6.707440 TTACCTGAAGTTGCATTTTCTGAA 57.293 33.333 14.89 0.00 0.00 3.02
391 392 5.796424 ACCTGAAGTTGCATTTTCTGAAT 57.204 34.783 14.89 4.81 0.00 2.57
392 393 5.776744 ACCTGAAGTTGCATTTTCTGAATC 58.223 37.500 14.89 0.00 0.00 2.52
393 394 4.855388 CCTGAAGTTGCATTTTCTGAATCG 59.145 41.667 14.89 0.00 0.00 3.34
394 395 4.797471 TGAAGTTGCATTTTCTGAATCGG 58.203 39.130 10.81 0.00 0.00 4.18
395 396 4.278170 TGAAGTTGCATTTTCTGAATCGGT 59.722 37.500 10.81 0.00 0.00 4.69
396 397 4.853924 AGTTGCATTTTCTGAATCGGTT 57.146 36.364 0.00 0.00 0.00 4.44
397 398 4.798574 AGTTGCATTTTCTGAATCGGTTC 58.201 39.130 0.08 0.08 34.85 3.62
398 399 4.520492 AGTTGCATTTTCTGAATCGGTTCT 59.480 37.500 10.29 0.00 35.33 3.01
399 400 5.010012 AGTTGCATTTTCTGAATCGGTTCTT 59.990 36.000 10.29 0.00 35.33 2.52
400 401 4.797471 TGCATTTTCTGAATCGGTTCTTG 58.203 39.130 10.29 2.94 35.33 3.02
401 402 4.518590 TGCATTTTCTGAATCGGTTCTTGA 59.481 37.500 10.29 5.35 35.33 3.02
402 403 4.853743 GCATTTTCTGAATCGGTTCTTGAC 59.146 41.667 10.29 0.00 35.33 3.18
403 404 5.335191 GCATTTTCTGAATCGGTTCTTGACT 60.335 40.000 10.29 0.00 35.33 3.41
404 405 6.672147 CATTTTCTGAATCGGTTCTTGACTT 58.328 36.000 10.29 0.00 35.33 3.01
407 408 3.323691 TCTGAATCGGTTCTTGACTTGGA 59.676 43.478 10.29 0.00 35.33 3.53
467 468 2.805671 TGAATACCCATTATTGAGCGCG 59.194 45.455 0.00 0.00 29.85 6.86
471 472 2.088423 ACCCATTATTGAGCGCGAAAA 58.912 42.857 12.10 0.00 0.00 2.29
539 571 1.424240 CTCGCTCGTTGACTCGCTA 59.576 57.895 0.00 0.00 0.00 4.26
1028 2606 2.087646 GAAGAAGAATGGGACTGGTGC 58.912 52.381 0.00 0.00 0.00 5.01
1139 2719 3.021695 CGGGTACTTGTACCTCTCATGA 58.978 50.000 23.96 0.00 39.97 3.07
1207 2787 2.049433 AACGTGAACCGGAGAGCG 60.049 61.111 9.46 10.15 42.24 5.03
1640 3229 4.020218 AGGTTAGTAGTGCTCATGCTGAAA 60.020 41.667 0.00 0.00 40.48 2.69
1715 3304 3.781079 TTGCTTCAAACACCTCACAAG 57.219 42.857 0.00 0.00 0.00 3.16
1716 3305 2.722094 TGCTTCAAACACCTCACAAGT 58.278 42.857 0.00 0.00 0.00 3.16
1717 3306 2.423185 TGCTTCAAACACCTCACAAGTG 59.577 45.455 0.00 0.00 41.15 3.16
1719 3308 3.316308 GCTTCAAACACCTCACAAGTGAT 59.684 43.478 3.01 0.00 39.13 3.06
1721 3310 4.149511 TCAAACACCTCACAAGTGATGA 57.850 40.909 11.59 5.41 39.13 2.92
1722 3311 4.522114 TCAAACACCTCACAAGTGATGAA 58.478 39.130 11.59 0.00 39.13 2.57
1723 3312 4.335315 TCAAACACCTCACAAGTGATGAAC 59.665 41.667 11.59 0.00 39.13 3.18
1725 3314 3.470709 ACACCTCACAAGTGATGAACTG 58.529 45.455 11.59 3.60 39.81 3.16
1729 3318 4.102524 ACCTCACAAGTGATGAACTGGTAA 59.897 41.667 11.59 0.00 41.49 2.85
1730 3319 4.692625 CCTCACAAGTGATGAACTGGTAAG 59.307 45.833 3.01 0.00 41.49 2.34
1731 3320 5.290493 TCACAAGTGATGAACTGGTAAGT 57.710 39.130 0.00 0.00 41.49 2.24
1732 3321 5.680619 TCACAAGTGATGAACTGGTAAGTT 58.319 37.500 0.00 0.00 41.49 2.66
1733 3322 6.119536 TCACAAGTGATGAACTGGTAAGTTT 58.880 36.000 0.00 0.00 41.49 2.66
1734 3323 6.601613 TCACAAGTGATGAACTGGTAAGTTTT 59.398 34.615 0.00 0.00 41.49 2.43
1735 3324 7.771361 TCACAAGTGATGAACTGGTAAGTTTTA 59.229 33.333 0.00 0.00 41.49 1.52
1741 4719 7.807907 GTGATGAACTGGTAAGTTTTATGGTTG 59.192 37.037 0.00 0.00 46.84 3.77
1873 4851 6.599244 TCAAAACTTGAAGAATCTGTGTGAGT 59.401 34.615 0.00 0.00 36.59 3.41
2318 5299 1.379044 CCTCAAAATCCTGGCGCCT 60.379 57.895 29.70 3.37 0.00 5.52
2319 5300 1.660560 CCTCAAAATCCTGGCGCCTG 61.661 60.000 29.70 27.29 0.00 4.85
2320 5301 1.660560 CTCAAAATCCTGGCGCCTGG 61.661 60.000 38.86 38.86 36.53 4.45
2321 5302 1.678635 CAAAATCCTGGCGCCTGGA 60.679 57.895 44.90 44.90 45.72 3.86
2322 5303 1.379044 AAAATCCTGGCGCCTGGAG 60.379 57.895 44.51 28.40 45.06 3.86
2323 5304 2.843912 AAAATCCTGGCGCCTGGAGG 62.844 60.000 44.51 34.62 45.06 4.30
2324 5305 4.804420 ATCCTGGCGCCTGGAGGA 62.804 66.667 44.51 37.75 45.06 3.71
2326 5307 4.033776 CCTGGCGCCTGGAGGAAA 62.034 66.667 40.93 12.74 37.23 3.13
2327 5308 2.273449 CTGGCGCCTGGAGGAAAT 59.727 61.111 29.70 0.00 37.39 2.17
2328 5309 1.821332 CTGGCGCCTGGAGGAAATC 60.821 63.158 29.70 0.00 37.39 2.17
2329 5310 2.262774 CTGGCGCCTGGAGGAAATCT 62.263 60.000 29.70 0.00 37.39 2.40
2330 5311 1.077429 GGCGCCTGGAGGAAATCTT 60.077 57.895 22.15 0.00 37.39 2.40
2331 5312 0.180406 GGCGCCTGGAGGAAATCTTA 59.820 55.000 22.15 0.00 37.39 2.10
2332 5313 1.587547 GCGCCTGGAGGAAATCTTAG 58.412 55.000 0.00 0.00 37.39 2.18
2333 5314 1.139058 GCGCCTGGAGGAAATCTTAGA 59.861 52.381 0.00 0.00 37.39 2.10
2334 5315 2.827652 CGCCTGGAGGAAATCTTAGAC 58.172 52.381 0.00 0.00 37.39 2.59
2335 5316 2.799917 CGCCTGGAGGAAATCTTAGACG 60.800 54.545 0.00 0.00 37.39 4.18
2336 5317 2.483889 GCCTGGAGGAAATCTTAGACGG 60.484 54.545 0.00 0.00 37.39 4.79
2337 5318 2.483889 CCTGGAGGAAATCTTAGACGGC 60.484 54.545 0.00 0.00 37.39 5.68
2338 5319 2.432510 CTGGAGGAAATCTTAGACGGCT 59.567 50.000 0.00 0.00 0.00 5.52
2339 5320 2.838202 TGGAGGAAATCTTAGACGGCTT 59.162 45.455 0.00 0.00 0.00 4.35
2340 5321 3.198872 GGAGGAAATCTTAGACGGCTTG 58.801 50.000 0.00 0.00 0.00 4.01
2341 5322 3.118738 GGAGGAAATCTTAGACGGCTTGA 60.119 47.826 0.00 0.00 0.00 3.02
2342 5323 4.504858 GAGGAAATCTTAGACGGCTTGAA 58.495 43.478 0.00 0.00 0.00 2.69
2343 5324 4.906618 AGGAAATCTTAGACGGCTTGAAA 58.093 39.130 0.00 0.00 0.00 2.69
2344 5325 5.501156 AGGAAATCTTAGACGGCTTGAAAT 58.499 37.500 0.00 0.00 0.00 2.17
2345 5326 5.946377 AGGAAATCTTAGACGGCTTGAAATT 59.054 36.000 0.00 0.00 0.00 1.82
2346 5327 7.110155 AGGAAATCTTAGACGGCTTGAAATTA 58.890 34.615 0.00 0.00 0.00 1.40
2347 5328 7.281100 AGGAAATCTTAGACGGCTTGAAATTAG 59.719 37.037 0.00 0.00 0.00 1.73
2348 5329 7.065923 GGAAATCTTAGACGGCTTGAAATTAGT 59.934 37.037 0.00 0.00 0.00 2.24
2349 5330 9.095065 GAAATCTTAGACGGCTTGAAATTAGTA 57.905 33.333 0.00 0.00 0.00 1.82
2350 5331 9.444600 AAATCTTAGACGGCTTGAAATTAGTAA 57.555 29.630 0.00 0.00 0.00 2.24
2351 5332 9.444600 AATCTTAGACGGCTTGAAATTAGTAAA 57.555 29.630 0.00 0.00 0.00 2.01
2352 5333 8.836268 TCTTAGACGGCTTGAAATTAGTAAAA 57.164 30.769 0.00 0.00 0.00 1.52
2353 5334 8.715088 TCTTAGACGGCTTGAAATTAGTAAAAC 58.285 33.333 0.00 0.00 0.00 2.43
2354 5335 6.250344 AGACGGCTTGAAATTAGTAAAACC 57.750 37.500 0.00 0.00 0.00 3.27
2355 5336 5.766174 AGACGGCTTGAAATTAGTAAAACCA 59.234 36.000 0.00 0.00 0.00 3.67
2356 5337 6.263617 AGACGGCTTGAAATTAGTAAAACCAA 59.736 34.615 0.00 0.00 0.00 3.67
2357 5338 6.988522 ACGGCTTGAAATTAGTAAAACCAAT 58.011 32.000 0.00 0.00 0.00 3.16
2358 5339 8.113173 ACGGCTTGAAATTAGTAAAACCAATA 57.887 30.769 0.00 0.00 0.00 1.90
2359 5340 8.745590 ACGGCTTGAAATTAGTAAAACCAATAT 58.254 29.630 0.00 0.00 0.00 1.28
2360 5341 9.581099 CGGCTTGAAATTAGTAAAACCAATATT 57.419 29.630 0.00 0.00 0.00 1.28
2385 5366 8.934023 TCTTTATTTCTTTTCTACATGGGTGT 57.066 30.769 0.00 0.00 42.39 4.16
2394 5375 2.595124 TACATGGGTGTAGTGCATCG 57.405 50.000 0.00 0.00 39.77 3.84
2395 5376 0.901827 ACATGGGTGTAGTGCATCGA 59.098 50.000 0.00 0.00 36.63 3.59
2396 5377 1.486310 ACATGGGTGTAGTGCATCGAT 59.514 47.619 0.00 0.00 36.63 3.59
2397 5378 2.698274 ACATGGGTGTAGTGCATCGATA 59.302 45.455 0.00 0.00 36.63 2.92
2398 5379 3.133901 ACATGGGTGTAGTGCATCGATAA 59.866 43.478 0.00 0.00 36.63 1.75
2399 5380 3.173668 TGGGTGTAGTGCATCGATAAC 57.826 47.619 0.00 0.00 0.00 1.89
2400 5381 2.764010 TGGGTGTAGTGCATCGATAACT 59.236 45.455 15.11 15.11 0.00 2.24
2401 5382 3.181479 TGGGTGTAGTGCATCGATAACTC 60.181 47.826 14.39 4.34 0.00 3.01
2402 5383 3.381949 GGTGTAGTGCATCGATAACTCC 58.618 50.000 14.39 8.05 0.00 3.85
2403 5384 3.181479 GGTGTAGTGCATCGATAACTCCA 60.181 47.826 14.39 8.44 0.00 3.86
2404 5385 4.501571 GGTGTAGTGCATCGATAACTCCAT 60.502 45.833 14.39 0.00 0.00 3.41
2405 5386 4.445718 GTGTAGTGCATCGATAACTCCATG 59.554 45.833 14.39 0.00 0.00 3.66
2406 5387 2.487934 AGTGCATCGATAACTCCATGC 58.512 47.619 0.00 0.00 41.75 4.06
2407 5388 2.103771 AGTGCATCGATAACTCCATGCT 59.896 45.455 0.00 0.00 41.89 3.79
2408 5389 2.222678 GTGCATCGATAACTCCATGCTG 59.777 50.000 0.00 0.00 41.89 4.41
2409 5390 2.102925 TGCATCGATAACTCCATGCTGA 59.897 45.455 0.00 0.00 41.89 4.26
2410 5391 3.133691 GCATCGATAACTCCATGCTGAA 58.866 45.455 0.00 0.00 38.89 3.02
2411 5392 3.561310 GCATCGATAACTCCATGCTGAAA 59.439 43.478 0.00 0.00 38.89 2.69
2412 5393 4.035558 GCATCGATAACTCCATGCTGAAAA 59.964 41.667 0.00 0.00 38.89 2.29
2413 5394 5.278169 GCATCGATAACTCCATGCTGAAAAT 60.278 40.000 0.00 0.00 38.89 1.82
2414 5395 6.732154 CATCGATAACTCCATGCTGAAAATT 58.268 36.000 0.00 0.00 0.00 1.82
2415 5396 6.757897 TCGATAACTCCATGCTGAAAATTT 57.242 33.333 0.00 0.00 0.00 1.82
2416 5397 6.554419 TCGATAACTCCATGCTGAAAATTTG 58.446 36.000 0.00 0.00 0.00 2.32
2417 5398 6.150976 TCGATAACTCCATGCTGAAAATTTGT 59.849 34.615 0.00 0.00 0.00 2.83
2418 5399 6.252015 CGATAACTCCATGCTGAAAATTTGTG 59.748 38.462 0.00 0.00 0.00 3.33
2419 5400 4.942761 ACTCCATGCTGAAAATTTGTGT 57.057 36.364 0.00 0.00 0.00 3.72
2420 5401 4.874970 ACTCCATGCTGAAAATTTGTGTC 58.125 39.130 0.00 0.00 0.00 3.67
2421 5402 4.586001 ACTCCATGCTGAAAATTTGTGTCT 59.414 37.500 0.00 0.00 0.00 3.41
2422 5403 5.069516 ACTCCATGCTGAAAATTTGTGTCTT 59.930 36.000 0.00 0.00 0.00 3.01
2423 5404 5.291178 TCCATGCTGAAAATTTGTGTCTTG 58.709 37.500 0.00 0.00 0.00 3.02
2424 5405 4.449743 CCATGCTGAAAATTTGTGTCTTGG 59.550 41.667 0.00 0.00 0.00 3.61
2425 5406 4.057406 TGCTGAAAATTTGTGTCTTGGG 57.943 40.909 0.00 0.00 0.00 4.12
2426 5407 2.802247 GCTGAAAATTTGTGTCTTGGGC 59.198 45.455 0.00 0.00 0.00 5.36
2427 5408 3.740764 GCTGAAAATTTGTGTCTTGGGCA 60.741 43.478 0.00 0.00 0.00 5.36
2428 5409 4.440880 CTGAAAATTTGTGTCTTGGGCAA 58.559 39.130 0.00 0.00 0.00 4.52
2429 5410 4.187694 TGAAAATTTGTGTCTTGGGCAAC 58.812 39.130 0.00 0.00 0.00 4.17
2430 5411 4.081198 TGAAAATTTGTGTCTTGGGCAACT 60.081 37.500 0.00 0.00 0.00 3.16
2431 5412 4.486125 AAATTTGTGTCTTGGGCAACTT 57.514 36.364 0.00 0.00 0.00 2.66
2432 5413 4.486125 AATTTGTGTCTTGGGCAACTTT 57.514 36.364 0.00 0.00 0.00 2.66
2433 5414 3.971245 TTTGTGTCTTGGGCAACTTTT 57.029 38.095 0.00 0.00 0.00 2.27
2434 5415 3.518634 TTGTGTCTTGGGCAACTTTTC 57.481 42.857 0.00 0.00 0.00 2.29
2435 5416 2.733956 TGTGTCTTGGGCAACTTTTCT 58.266 42.857 0.00 0.00 0.00 2.52
2436 5417 3.892284 TGTGTCTTGGGCAACTTTTCTA 58.108 40.909 0.00 0.00 0.00 2.10
2437 5418 3.882888 TGTGTCTTGGGCAACTTTTCTAG 59.117 43.478 0.00 0.00 0.00 2.43
2438 5419 2.884639 TGTCTTGGGCAACTTTTCTAGC 59.115 45.455 0.00 0.00 0.00 3.42
2439 5420 2.229062 GTCTTGGGCAACTTTTCTAGCC 59.771 50.000 0.00 0.00 46.28 3.93
2440 5421 2.108250 TCTTGGGCAACTTTTCTAGCCT 59.892 45.455 0.00 0.00 46.23 4.58
2441 5422 1.909700 TGGGCAACTTTTCTAGCCTG 58.090 50.000 0.00 0.00 46.23 4.85
2442 5423 0.528017 GGGCAACTTTTCTAGCCTGC 59.472 55.000 0.00 0.00 46.23 4.85
2443 5424 1.247567 GGCAACTTTTCTAGCCTGCA 58.752 50.000 0.00 0.00 43.70 4.41
2444 5425 1.068264 GGCAACTTTTCTAGCCTGCAC 60.068 52.381 0.00 0.00 43.70 4.57
2445 5426 1.882623 GCAACTTTTCTAGCCTGCACT 59.117 47.619 0.00 0.00 36.50 4.40
2446 5427 2.294512 GCAACTTTTCTAGCCTGCACTT 59.705 45.455 0.00 0.00 36.50 3.16
2447 5428 3.610349 GCAACTTTTCTAGCCTGCACTTC 60.610 47.826 0.00 0.00 36.50 3.01
2448 5429 3.492102 ACTTTTCTAGCCTGCACTTCA 57.508 42.857 0.00 0.00 0.00 3.02
2449 5430 4.026356 ACTTTTCTAGCCTGCACTTCAT 57.974 40.909 0.00 0.00 0.00 2.57
2450 5431 4.401925 ACTTTTCTAGCCTGCACTTCATT 58.598 39.130 0.00 0.00 0.00 2.57
2451 5432 4.829492 ACTTTTCTAGCCTGCACTTCATTT 59.171 37.500 0.00 0.00 0.00 2.32
2452 5433 4.771590 TTTCTAGCCTGCACTTCATTTG 57.228 40.909 0.00 0.00 0.00 2.32
2453 5434 3.701205 TCTAGCCTGCACTTCATTTGA 57.299 42.857 0.00 0.00 0.00 2.69
2454 5435 4.019792 TCTAGCCTGCACTTCATTTGAA 57.980 40.909 0.00 0.00 0.00 2.69
2455 5436 3.753272 TCTAGCCTGCACTTCATTTGAAC 59.247 43.478 0.00 0.00 0.00 3.18
2456 5437 2.590821 AGCCTGCACTTCATTTGAACT 58.409 42.857 0.00 0.00 0.00 3.01
2457 5438 3.754965 AGCCTGCACTTCATTTGAACTA 58.245 40.909 0.00 0.00 0.00 2.24
2458 5439 4.338879 AGCCTGCACTTCATTTGAACTAT 58.661 39.130 0.00 0.00 0.00 2.12
2459 5440 5.500234 AGCCTGCACTTCATTTGAACTATA 58.500 37.500 0.00 0.00 0.00 1.31
2460 5441 6.125029 AGCCTGCACTTCATTTGAACTATAT 58.875 36.000 0.00 0.00 0.00 0.86
2461 5442 7.282585 AGCCTGCACTTCATTTGAACTATATA 58.717 34.615 0.00 0.00 0.00 0.86
2462 5443 7.941238 AGCCTGCACTTCATTTGAACTATATAT 59.059 33.333 0.00 0.00 0.00 0.86
2463 5444 8.571336 GCCTGCACTTCATTTGAACTATATATT 58.429 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.750657 GGACTGGCTCCCCTCCATG 61.751 68.421 0.00 0.00 31.83 3.66
1 2 2.367512 GGACTGGCTCCCCTCCAT 60.368 66.667 0.00 0.00 31.83 3.41
2 3 3.615811 AGGACTGGCTCCCCTCCA 61.616 66.667 2.82 0.00 40.53 3.86
3 4 2.766229 GAGGACTGGCTCCCCTCC 60.766 72.222 0.00 0.00 40.53 4.30
4 5 2.766229 GGAGGACTGGCTCCCCTC 60.766 72.222 9.94 9.94 44.32 4.30
5 6 4.787280 CGGAGGACTGGCTCCCCT 62.787 72.222 0.00 0.00 40.53 4.79
6 7 4.779733 TCGGAGGACTGGCTCCCC 62.780 72.222 0.00 0.00 40.53 4.81
7 8 3.151022 CTCGGAGGACTGGCTCCC 61.151 72.222 0.00 0.00 40.53 4.30
8 9 2.043852 TCTCGGAGGACTGGCTCC 60.044 66.667 4.96 0.00 39.81 4.70
9 10 1.379309 ACTCTCGGAGGACTGGCTC 60.379 63.158 4.96 0.00 33.35 4.70
10 11 1.680651 CACTCTCGGAGGACTGGCT 60.681 63.158 4.96 0.00 33.35 4.75
11 12 1.979693 ACACTCTCGGAGGACTGGC 60.980 63.158 4.96 0.00 33.35 4.85
12 13 1.886585 CACACTCTCGGAGGACTGG 59.113 63.158 4.96 0.00 33.35 4.00
13 14 1.214062 GCACACTCTCGGAGGACTG 59.786 63.158 4.96 1.02 33.35 3.51
14 15 1.979693 GGCACACTCTCGGAGGACT 60.980 63.158 4.96 0.00 33.35 3.85
15 16 2.574399 GGCACACTCTCGGAGGAC 59.426 66.667 4.96 0.00 33.35 3.85
16 17 3.062466 CGGCACACTCTCGGAGGA 61.062 66.667 4.96 0.00 33.35 3.71
17 18 3.062466 TCGGCACACTCTCGGAGG 61.062 66.667 4.96 0.00 33.35 4.30
18 19 2.179517 GTCGGCACACTCTCGGAG 59.820 66.667 0.00 0.00 35.52 4.63
19 20 3.733960 CGTCGGCACACTCTCGGA 61.734 66.667 0.00 0.00 0.00 4.55
20 21 3.553437 AACGTCGGCACACTCTCGG 62.553 63.158 0.00 0.00 0.00 4.63
21 22 2.050351 AACGTCGGCACACTCTCG 60.050 61.111 0.00 0.00 0.00 4.04
22 23 0.388649 ATCAACGTCGGCACACTCTC 60.389 55.000 0.00 0.00 0.00 3.20
23 24 0.667487 CATCAACGTCGGCACACTCT 60.667 55.000 0.00 0.00 0.00 3.24
24 25 0.944311 ACATCAACGTCGGCACACTC 60.944 55.000 0.00 0.00 0.00 3.51
25 26 0.315886 TACATCAACGTCGGCACACT 59.684 50.000 0.00 0.00 0.00 3.55
26 27 0.713883 CTACATCAACGTCGGCACAC 59.286 55.000 0.00 0.00 0.00 3.82
27 28 0.599060 TCTACATCAACGTCGGCACA 59.401 50.000 0.00 0.00 0.00 4.57
28 29 0.989890 GTCTACATCAACGTCGGCAC 59.010 55.000 0.00 0.00 0.00 5.01
29 30 0.885879 AGTCTACATCAACGTCGGCA 59.114 50.000 0.00 0.00 0.00 5.69
30 31 1.269166 CAGTCTACATCAACGTCGGC 58.731 55.000 0.00 0.00 0.00 5.54
31 32 1.269166 GCAGTCTACATCAACGTCGG 58.731 55.000 0.00 0.00 0.00 4.79
32 33 0.907837 CGCAGTCTACATCAACGTCG 59.092 55.000 0.00 0.00 0.00 5.12
33 34 1.978542 ACGCAGTCTACATCAACGTC 58.021 50.000 0.00 0.00 29.74 4.34
54 55 4.179579 GATTTCACCCCGCGCTGC 62.180 66.667 5.56 0.00 0.00 5.25
55 56 3.864686 CGATTTCACCCCGCGCTG 61.865 66.667 5.56 0.00 0.00 5.18
59 60 3.415650 ATCCCCGATTTCACCCCGC 62.416 63.158 0.00 0.00 0.00 6.13
60 61 1.227853 GATCCCCGATTTCACCCCG 60.228 63.158 0.00 0.00 0.00 5.73
61 62 0.108774 GAGATCCCCGATTTCACCCC 59.891 60.000 0.00 0.00 0.00 4.95
62 63 0.249911 CGAGATCCCCGATTTCACCC 60.250 60.000 0.00 0.00 0.00 4.61
63 64 0.880718 GCGAGATCCCCGATTTCACC 60.881 60.000 9.01 0.00 0.00 4.02
64 65 1.215655 CGCGAGATCCCCGATTTCAC 61.216 60.000 0.00 0.00 0.00 3.18
65 66 1.067416 CGCGAGATCCCCGATTTCA 59.933 57.895 0.00 0.00 0.00 2.69
66 67 1.664965 CCGCGAGATCCCCGATTTC 60.665 63.158 8.23 0.00 0.00 2.17
67 68 2.088674 CTCCGCGAGATCCCCGATTT 62.089 60.000 8.23 0.00 0.00 2.17
68 69 2.520982 TCCGCGAGATCCCCGATT 60.521 61.111 8.23 0.00 0.00 3.34
69 70 2.986413 CTCCGCGAGATCCCCGAT 60.986 66.667 8.23 0.00 0.00 4.18
73 74 4.292178 CTGCCTCCGCGAGATCCC 62.292 72.222 8.23 0.00 38.08 3.85
74 75 3.532155 ACTGCCTCCGCGAGATCC 61.532 66.667 8.23 0.00 38.08 3.36
75 76 2.279120 CACTGCCTCCGCGAGATC 60.279 66.667 8.23 0.00 38.08 2.75
76 77 3.842923 CCACTGCCTCCGCGAGAT 61.843 66.667 8.23 0.00 38.08 2.75
78 79 4.504916 CTCCACTGCCTCCGCGAG 62.505 72.222 8.23 2.69 38.08 5.03
81 82 4.479993 ATGCTCCACTGCCTCCGC 62.480 66.667 0.00 0.00 0.00 5.54
82 83 2.513204 CATGCTCCACTGCCTCCG 60.513 66.667 0.00 0.00 0.00 4.63
83 84 2.124403 CCATGCTCCACTGCCTCC 60.124 66.667 0.00 0.00 0.00 4.30
84 85 2.827642 GCCATGCTCCACTGCCTC 60.828 66.667 0.00 0.00 0.00 4.70
85 86 4.437587 GGCCATGCTCCACTGCCT 62.438 66.667 0.00 0.00 39.05 4.75
129 130 2.824041 ATGGACATCGCCGCCAAC 60.824 61.111 0.00 0.00 34.95 3.77
130 131 2.823593 CATGGACATCGCCGCCAA 60.824 61.111 0.00 0.00 34.95 4.52
131 132 4.854924 CCATGGACATCGCCGCCA 62.855 66.667 5.56 0.00 35.91 5.69
132 133 4.545706 TCCATGGACATCGCCGCC 62.546 66.667 11.44 0.00 0.00 6.13
133 134 2.969238 CTCCATGGACATCGCCGC 60.969 66.667 11.44 0.00 0.00 6.53
134 135 1.592669 GTCTCCATGGACATCGCCG 60.593 63.158 11.44 0.00 36.35 6.46
135 136 1.592669 CGTCTCCATGGACATCGCC 60.593 63.158 11.44 0.00 36.12 5.54
136 137 0.596083 CTCGTCTCCATGGACATCGC 60.596 60.000 11.44 0.00 36.12 4.58
137 138 0.031314 CCTCGTCTCCATGGACATCG 59.969 60.000 11.44 15.20 36.12 3.84
138 139 1.115467 ACCTCGTCTCCATGGACATC 58.885 55.000 11.44 3.20 36.12 3.06
139 140 1.208052 CAACCTCGTCTCCATGGACAT 59.792 52.381 11.44 0.00 36.12 3.06
140 141 0.608130 CAACCTCGTCTCCATGGACA 59.392 55.000 11.44 0.00 36.12 4.02
141 142 0.108138 CCAACCTCGTCTCCATGGAC 60.108 60.000 11.44 1.21 0.00 4.02
142 143 0.544357 ACCAACCTCGTCTCCATGGA 60.544 55.000 15.27 15.27 0.00 3.41
143 144 0.391661 CACCAACCTCGTCTCCATGG 60.392 60.000 4.97 4.97 0.00 3.66
144 145 0.608130 TCACCAACCTCGTCTCCATG 59.392 55.000 0.00 0.00 0.00 3.66
145 146 1.208052 CATCACCAACCTCGTCTCCAT 59.792 52.381 0.00 0.00 0.00 3.41
146 147 0.608130 CATCACCAACCTCGTCTCCA 59.392 55.000 0.00 0.00 0.00 3.86
147 148 0.741221 GCATCACCAACCTCGTCTCC 60.741 60.000 0.00 0.00 0.00 3.71
148 149 1.078759 CGCATCACCAACCTCGTCTC 61.079 60.000 0.00 0.00 0.00 3.36
149 150 1.079819 CGCATCACCAACCTCGTCT 60.080 57.895 0.00 0.00 0.00 4.18
150 151 2.740714 GCGCATCACCAACCTCGTC 61.741 63.158 0.30 0.00 0.00 4.20
151 152 2.742372 GCGCATCACCAACCTCGT 60.742 61.111 0.30 0.00 0.00 4.18
152 153 2.434884 AGCGCATCACCAACCTCG 60.435 61.111 11.47 0.00 0.00 4.63
153 154 3.044059 GCAGCGCATCACCAACCTC 62.044 63.158 11.47 0.00 0.00 3.85
154 155 3.058160 GCAGCGCATCACCAACCT 61.058 61.111 11.47 0.00 0.00 3.50
155 156 3.364441 TGCAGCGCATCACCAACC 61.364 61.111 11.47 0.00 31.71 3.77
156 157 2.126734 GTGCAGCGCATCACCAAC 60.127 61.111 11.47 0.00 41.91 3.77
159 160 3.807538 CTGGTGCAGCGCATCACC 61.808 66.667 31.60 31.60 45.28 4.02
160 161 4.471726 GCTGGTGCAGCGCATCAC 62.472 66.667 21.79 19.58 45.28 3.06
226 227 4.436998 GAGGACGGAGGCGTGGTG 62.437 72.222 0.00 0.00 0.00 4.17
227 228 4.680537 AGAGGACGGAGGCGTGGT 62.681 66.667 0.00 0.00 0.00 4.16
228 229 3.827898 GAGAGGACGGAGGCGTGG 61.828 72.222 0.00 0.00 0.00 4.94
229 230 2.343163 GATGAGAGGACGGAGGCGTG 62.343 65.000 0.00 0.00 0.00 5.34
230 231 2.043852 ATGAGAGGACGGAGGCGT 60.044 61.111 0.00 0.00 0.00 5.68
231 232 2.725008 GATGAGAGGACGGAGGCG 59.275 66.667 0.00 0.00 0.00 5.52
232 233 2.065906 GACGATGAGAGGACGGAGGC 62.066 65.000 0.00 0.00 0.00 4.70
233 234 1.448922 GGACGATGAGAGGACGGAGG 61.449 65.000 0.00 0.00 0.00 4.30
234 235 0.748367 TGGACGATGAGAGGACGGAG 60.748 60.000 0.00 0.00 0.00 4.63
235 236 0.106669 ATGGACGATGAGAGGACGGA 60.107 55.000 0.00 0.00 0.00 4.69
236 237 1.267261 GTATGGACGATGAGAGGACGG 59.733 57.143 0.00 0.00 0.00 4.79
237 238 1.267261 GGTATGGACGATGAGAGGACG 59.733 57.143 0.00 0.00 0.00 4.79
238 239 1.267261 CGGTATGGACGATGAGAGGAC 59.733 57.143 0.00 0.00 0.00 3.85
239 240 1.142262 TCGGTATGGACGATGAGAGGA 59.858 52.381 0.00 0.00 35.12 3.71
240 241 1.267261 GTCGGTATGGACGATGAGAGG 59.733 57.143 0.00 0.00 42.82 3.69
241 242 2.690173 GTCGGTATGGACGATGAGAG 57.310 55.000 0.00 0.00 42.82 3.20
249 250 2.025727 CTCGCCGTCGGTATGGAC 59.974 66.667 13.94 0.00 33.01 4.02
250 251 3.214123 CCTCGCCGTCGGTATGGA 61.214 66.667 13.94 4.85 33.01 3.41
251 252 4.280494 CCCTCGCCGTCGGTATGG 62.280 72.222 13.94 11.75 36.13 2.74
252 253 3.524606 ACCCTCGCCGTCGGTATG 61.525 66.667 13.94 3.52 36.13 2.39
253 254 3.524606 CACCCTCGCCGTCGGTAT 61.525 66.667 13.94 0.00 36.13 2.73
285 286 3.060614 ATCAATCCCCCACCGCCTG 62.061 63.158 0.00 0.00 0.00 4.85
286 287 2.696125 ATCAATCCCCCACCGCCT 60.696 61.111 0.00 0.00 0.00 5.52
287 288 2.519302 CATCAATCCCCCACCGCC 60.519 66.667 0.00 0.00 0.00 6.13
288 289 3.219198 GCATCAATCCCCCACCGC 61.219 66.667 0.00 0.00 0.00 5.68
289 290 2.901840 CGCATCAATCCCCCACCG 60.902 66.667 0.00 0.00 0.00 4.94
290 291 2.519302 CCGCATCAATCCCCCACC 60.519 66.667 0.00 0.00 0.00 4.61
291 292 3.219198 GCCGCATCAATCCCCCAC 61.219 66.667 0.00 0.00 0.00 4.61
292 293 4.873810 CGCCGCATCAATCCCCCA 62.874 66.667 0.00 0.00 0.00 4.96
296 297 4.875713 ACCCCGCCGCATCAATCC 62.876 66.667 0.00 0.00 0.00 3.01
297 298 2.828549 AACCCCGCCGCATCAATC 60.829 61.111 0.00 0.00 0.00 2.67
298 299 3.140141 CAACCCCGCCGCATCAAT 61.140 61.111 0.00 0.00 0.00 2.57
308 309 2.650813 CTAGCTAGCTGCCAACCCCG 62.651 65.000 27.68 0.63 44.23 5.73
309 310 1.147153 CTAGCTAGCTGCCAACCCC 59.853 63.158 27.68 0.00 44.23 4.95
310 311 1.147153 CCTAGCTAGCTGCCAACCC 59.853 63.158 27.68 0.00 44.23 4.11
311 312 1.524849 GCCTAGCTAGCTGCCAACC 60.525 63.158 27.68 5.77 44.23 3.77
312 313 1.884926 CGCCTAGCTAGCTGCCAAC 60.885 63.158 27.68 10.74 44.23 3.77
313 314 1.613317 TTCGCCTAGCTAGCTGCCAA 61.613 55.000 27.68 14.67 44.23 4.52
314 315 2.021068 CTTCGCCTAGCTAGCTGCCA 62.021 60.000 27.68 8.94 44.23 4.92
315 316 1.300542 CTTCGCCTAGCTAGCTGCC 60.301 63.158 27.68 13.43 44.23 4.85
316 317 0.103208 TTCTTCGCCTAGCTAGCTGC 59.897 55.000 27.68 20.94 43.29 5.25
317 318 2.402305 CATTCTTCGCCTAGCTAGCTG 58.598 52.381 27.68 16.13 0.00 4.24
318 319 1.342819 CCATTCTTCGCCTAGCTAGCT 59.657 52.381 23.12 23.12 0.00 3.32
319 320 1.341531 TCCATTCTTCGCCTAGCTAGC 59.658 52.381 15.74 6.62 0.00 3.42
320 321 3.006323 ACATCCATTCTTCGCCTAGCTAG 59.994 47.826 14.20 14.20 0.00 3.42
321 322 2.965831 ACATCCATTCTTCGCCTAGCTA 59.034 45.455 0.00 0.00 0.00 3.32
322 323 1.765314 ACATCCATTCTTCGCCTAGCT 59.235 47.619 0.00 0.00 0.00 3.32
323 324 2.246719 ACATCCATTCTTCGCCTAGC 57.753 50.000 0.00 0.00 0.00 3.42
324 325 4.191544 TGAAACATCCATTCTTCGCCTAG 58.808 43.478 0.00 0.00 0.00 3.02
325 326 4.191544 CTGAAACATCCATTCTTCGCCTA 58.808 43.478 0.00 0.00 0.00 3.93
326 327 3.012518 CTGAAACATCCATTCTTCGCCT 58.987 45.455 0.00 0.00 0.00 5.52
327 328 2.749621 ACTGAAACATCCATTCTTCGCC 59.250 45.455 0.00 0.00 0.00 5.54
328 329 4.425577 AACTGAAACATCCATTCTTCGC 57.574 40.909 0.00 0.00 0.00 4.70
329 330 5.156355 CCAAACTGAAACATCCATTCTTCG 58.844 41.667 0.00 0.00 0.00 3.79
330 331 4.925646 GCCAAACTGAAACATCCATTCTTC 59.074 41.667 0.00 0.00 0.00 2.87
331 332 4.262592 GGCCAAACTGAAACATCCATTCTT 60.263 41.667 0.00 0.00 0.00 2.52
332 333 3.259123 GGCCAAACTGAAACATCCATTCT 59.741 43.478 0.00 0.00 0.00 2.40
333 334 3.006752 TGGCCAAACTGAAACATCCATTC 59.993 43.478 0.61 0.00 0.00 2.67
334 335 2.971330 TGGCCAAACTGAAACATCCATT 59.029 40.909 0.61 0.00 0.00 3.16
335 336 2.299867 GTGGCCAAACTGAAACATCCAT 59.700 45.455 7.24 0.00 0.00 3.41
336 337 1.686052 GTGGCCAAACTGAAACATCCA 59.314 47.619 7.24 0.00 0.00 3.41
337 338 1.963515 AGTGGCCAAACTGAAACATCC 59.036 47.619 7.24 0.00 0.00 3.51
338 339 3.733443 AAGTGGCCAAACTGAAACATC 57.267 42.857 7.24 0.00 0.00 3.06
339 340 7.480760 AATATAAGTGGCCAAACTGAAACAT 57.519 32.000 7.24 0.00 0.00 2.71
340 341 6.909550 AATATAAGTGGCCAAACTGAAACA 57.090 33.333 7.24 0.00 0.00 2.83
341 342 8.601845 AAAAATATAAGTGGCCAAACTGAAAC 57.398 30.769 7.24 0.00 0.00 2.78
364 365 7.551585 TCAGAAAATGCAACTTCAGGTAAAAA 58.448 30.769 12.23 0.00 0.00 1.94
365 366 7.106439 TCAGAAAATGCAACTTCAGGTAAAA 57.894 32.000 12.23 0.00 0.00 1.52
366 367 6.707440 TCAGAAAATGCAACTTCAGGTAAA 57.293 33.333 12.23 0.00 0.00 2.01
367 368 6.707440 TTCAGAAAATGCAACTTCAGGTAA 57.293 33.333 12.23 0.90 0.00 2.85
368 369 6.348458 CGATTCAGAAAATGCAACTTCAGGTA 60.348 38.462 12.23 1.24 0.00 3.08
369 370 5.563475 CGATTCAGAAAATGCAACTTCAGGT 60.563 40.000 12.23 0.26 0.00 4.00
370 371 4.855388 CGATTCAGAAAATGCAACTTCAGG 59.145 41.667 12.23 5.58 0.00 3.86
371 372 4.855388 CCGATTCAGAAAATGCAACTTCAG 59.145 41.667 12.23 5.78 0.00 3.02
372 373 4.278170 ACCGATTCAGAAAATGCAACTTCA 59.722 37.500 12.23 0.00 0.00 3.02
373 374 4.798574 ACCGATTCAGAAAATGCAACTTC 58.201 39.130 0.00 0.00 0.00 3.01
374 375 4.853924 ACCGATTCAGAAAATGCAACTT 57.146 36.364 0.00 0.00 0.00 2.66
375 376 4.520492 AGAACCGATTCAGAAAATGCAACT 59.480 37.500 0.00 0.00 37.29 3.16
376 377 4.798574 AGAACCGATTCAGAAAATGCAAC 58.201 39.130 0.00 0.00 37.29 4.17
377 378 5.009510 TCAAGAACCGATTCAGAAAATGCAA 59.990 36.000 0.00 0.00 37.29 4.08
378 379 4.518590 TCAAGAACCGATTCAGAAAATGCA 59.481 37.500 0.00 0.00 37.29 3.96
379 380 4.853743 GTCAAGAACCGATTCAGAAAATGC 59.146 41.667 0.00 0.00 37.29 3.56
380 381 6.246420 AGTCAAGAACCGATTCAGAAAATG 57.754 37.500 0.00 0.00 37.29 2.32
381 382 6.294176 CCAAGTCAAGAACCGATTCAGAAAAT 60.294 38.462 0.00 0.00 37.29 1.82
382 383 5.008613 CCAAGTCAAGAACCGATTCAGAAAA 59.991 40.000 0.00 0.00 37.29 2.29
383 384 4.515191 CCAAGTCAAGAACCGATTCAGAAA 59.485 41.667 0.00 0.00 37.29 2.52
384 385 4.065088 CCAAGTCAAGAACCGATTCAGAA 58.935 43.478 0.00 0.00 37.29 3.02
385 386 3.323691 TCCAAGTCAAGAACCGATTCAGA 59.676 43.478 0.00 0.00 37.29 3.27
386 387 3.664107 TCCAAGTCAAGAACCGATTCAG 58.336 45.455 0.00 0.00 37.29 3.02
387 388 3.557054 CCTCCAAGTCAAGAACCGATTCA 60.557 47.826 0.00 0.00 37.29 2.57
388 389 3.003480 CCTCCAAGTCAAGAACCGATTC 58.997 50.000 0.00 0.00 34.78 2.52
389 390 2.876079 GCCTCCAAGTCAAGAACCGATT 60.876 50.000 0.00 0.00 0.00 3.34
390 391 1.339151 GCCTCCAAGTCAAGAACCGAT 60.339 52.381 0.00 0.00 0.00 4.18
391 392 0.034896 GCCTCCAAGTCAAGAACCGA 59.965 55.000 0.00 0.00 0.00 4.69
392 393 0.250295 TGCCTCCAAGTCAAGAACCG 60.250 55.000 0.00 0.00 0.00 4.44
393 394 1.202818 AGTGCCTCCAAGTCAAGAACC 60.203 52.381 0.00 0.00 0.00 3.62
394 395 1.876156 CAGTGCCTCCAAGTCAAGAAC 59.124 52.381 0.00 0.00 0.00 3.01
395 396 1.202806 CCAGTGCCTCCAAGTCAAGAA 60.203 52.381 0.00 0.00 0.00 2.52
396 397 0.397941 CCAGTGCCTCCAAGTCAAGA 59.602 55.000 0.00 0.00 0.00 3.02
397 398 1.239968 GCCAGTGCCTCCAAGTCAAG 61.240 60.000 0.00 0.00 0.00 3.02
398 399 1.228245 GCCAGTGCCTCCAAGTCAA 60.228 57.895 0.00 0.00 0.00 3.18
399 400 2.431683 GCCAGTGCCTCCAAGTCA 59.568 61.111 0.00 0.00 0.00 3.41
400 401 2.743928 CGCCAGTGCCTCCAAGTC 60.744 66.667 0.00 0.00 0.00 3.01
401 402 4.335647 CCGCCAGTGCCTCCAAGT 62.336 66.667 0.00 0.00 0.00 3.16
877 2383 8.451908 AAACTCTGTTTTCTTTAGCACTGTAT 57.548 30.769 0.00 0.00 0.00 2.29
1156 2736 0.887247 TGCACTAACGCCAATTGCAT 59.113 45.000 0.00 0.00 38.25 3.96
1207 2787 1.606601 GGGTTGGGGTTGCTTCTCC 60.607 63.158 0.00 0.00 0.00 3.71
1640 3229 8.976353 AGTGAACATATCATACTTCTCTTGAGT 58.024 33.333 0.00 0.00 40.97 3.41
1715 3304 7.448748 ACCATAAAACTTACCAGTTCATCAC 57.551 36.000 0.00 0.00 42.89 3.06
1716 3305 7.040062 CCAACCATAAAACTTACCAGTTCATCA 60.040 37.037 0.00 0.00 42.89 3.07
1717 3306 7.312899 CCAACCATAAAACTTACCAGTTCATC 58.687 38.462 0.00 0.00 42.89 2.92
1719 3308 5.536916 CCCAACCATAAAACTTACCAGTTCA 59.463 40.000 0.00 0.00 42.89 3.18
1721 3310 4.282449 GCCCAACCATAAAACTTACCAGTT 59.718 41.667 0.00 0.00 45.89 3.16
1722 3311 3.830178 GCCCAACCATAAAACTTACCAGT 59.170 43.478 0.00 0.00 33.11 4.00
1723 3312 4.086457 AGCCCAACCATAAAACTTACCAG 58.914 43.478 0.00 0.00 0.00 4.00
1725 3314 4.816392 CAAGCCCAACCATAAAACTTACC 58.184 43.478 0.00 0.00 0.00 2.85
1729 3318 2.608623 AGCAAGCCCAACCATAAAACT 58.391 42.857 0.00 0.00 0.00 2.66
1730 3319 3.257127 TGTAGCAAGCCCAACCATAAAAC 59.743 43.478 0.00 0.00 0.00 2.43
1731 3320 3.501349 TGTAGCAAGCCCAACCATAAAA 58.499 40.909 0.00 0.00 0.00 1.52
1732 3321 3.162147 TGTAGCAAGCCCAACCATAAA 57.838 42.857 0.00 0.00 0.00 1.40
1733 3322 2.889170 TGTAGCAAGCCCAACCATAA 57.111 45.000 0.00 0.00 0.00 1.90
1734 3323 2.889170 TTGTAGCAAGCCCAACCATA 57.111 45.000 0.00 0.00 0.00 2.74
1735 3324 1.895131 CTTTGTAGCAAGCCCAACCAT 59.105 47.619 0.00 0.00 0.00 3.55
1741 4719 3.926527 GCATAAAACTTTGTAGCAAGCCC 59.073 43.478 0.00 0.00 0.00 5.19
1873 4851 5.053811 TGTCTCGACAAGCATAACTGAAAA 58.946 37.500 0.00 0.00 38.56 2.29
2051 5029 6.074648 TCCCTCTCAACAAATGTAACCAAAT 58.925 36.000 0.00 0.00 0.00 2.32
2318 5299 2.467880 AGCCGTCTAAGATTTCCTCCA 58.532 47.619 0.00 0.00 0.00 3.86
2319 5300 3.118738 TCAAGCCGTCTAAGATTTCCTCC 60.119 47.826 0.00 0.00 0.00 4.30
2320 5301 4.124851 TCAAGCCGTCTAAGATTTCCTC 57.875 45.455 0.00 0.00 0.00 3.71
2321 5302 4.553330 TTCAAGCCGTCTAAGATTTCCT 57.447 40.909 0.00 0.00 0.00 3.36
2322 5303 5.819825 ATTTCAAGCCGTCTAAGATTTCC 57.180 39.130 0.00 0.00 0.00 3.13
2323 5304 7.975750 ACTAATTTCAAGCCGTCTAAGATTTC 58.024 34.615 0.00 0.00 0.00 2.17
2324 5305 7.923414 ACTAATTTCAAGCCGTCTAAGATTT 57.077 32.000 0.00 0.00 0.00 2.17
2325 5306 9.444600 TTTACTAATTTCAAGCCGTCTAAGATT 57.555 29.630 0.00 0.00 0.00 2.40
2326 5307 9.444600 TTTTACTAATTTCAAGCCGTCTAAGAT 57.555 29.630 0.00 0.00 0.00 2.40
2327 5308 8.715088 GTTTTACTAATTTCAAGCCGTCTAAGA 58.285 33.333 0.00 0.00 0.00 2.10
2328 5309 7.961283 GGTTTTACTAATTTCAAGCCGTCTAAG 59.039 37.037 0.00 0.00 0.00 2.18
2329 5310 7.444792 TGGTTTTACTAATTTCAAGCCGTCTAA 59.555 33.333 0.00 0.00 0.00 2.10
2330 5311 6.935771 TGGTTTTACTAATTTCAAGCCGTCTA 59.064 34.615 0.00 0.00 0.00 2.59
2331 5312 5.766174 TGGTTTTACTAATTTCAAGCCGTCT 59.234 36.000 0.00 0.00 0.00 4.18
2332 5313 6.004408 TGGTTTTACTAATTTCAAGCCGTC 57.996 37.500 0.00 0.00 0.00 4.79
2333 5314 6.394025 TTGGTTTTACTAATTTCAAGCCGT 57.606 33.333 0.00 0.00 0.00 5.68
2334 5315 9.581099 AATATTGGTTTTACTAATTTCAAGCCG 57.419 29.630 0.00 0.00 31.57 5.52
2359 5340 9.362151 ACACCCATGTAGAAAAGAAATAAAGAA 57.638 29.630 0.00 0.00 37.26 2.52
2360 5341 8.934023 ACACCCATGTAGAAAAGAAATAAAGA 57.066 30.769 0.00 0.00 37.26 2.52
2375 5356 2.104170 TCGATGCACTACACCCATGTA 58.896 47.619 0.00 0.00 40.48 2.29
2376 5357 0.901827 TCGATGCACTACACCCATGT 59.098 50.000 0.00 0.00 43.30 3.21
2377 5358 2.245159 ATCGATGCACTACACCCATG 57.755 50.000 0.00 0.00 0.00 3.66
2378 5359 3.388024 AGTTATCGATGCACTACACCCAT 59.612 43.478 8.54 0.00 0.00 4.00
2379 5360 2.764010 AGTTATCGATGCACTACACCCA 59.236 45.455 8.54 0.00 0.00 4.51
2380 5361 3.381949 GAGTTATCGATGCACTACACCC 58.618 50.000 8.54 0.00 0.00 4.61
2381 5362 3.181479 TGGAGTTATCGATGCACTACACC 60.181 47.826 16.75 12.08 0.00 4.16
2382 5363 4.041740 TGGAGTTATCGATGCACTACAC 57.958 45.455 16.75 9.50 0.00 2.90
2383 5364 4.620982 CATGGAGTTATCGATGCACTACA 58.379 43.478 20.90 20.90 35.28 2.74
2390 5371 5.739752 TTTTCAGCATGGAGTTATCGATG 57.260 39.130 8.54 0.00 42.71 3.84
2391 5372 6.949352 AATTTTCAGCATGGAGTTATCGAT 57.051 33.333 2.16 2.16 36.16 3.59
2392 5373 6.150976 ACAAATTTTCAGCATGGAGTTATCGA 59.849 34.615 0.00 0.00 36.16 3.59
2393 5374 6.252015 CACAAATTTTCAGCATGGAGTTATCG 59.748 38.462 0.00 0.00 36.16 2.92
2394 5375 7.092716 ACACAAATTTTCAGCATGGAGTTATC 58.907 34.615 0.00 0.00 36.16 1.75
2395 5376 6.996509 ACACAAATTTTCAGCATGGAGTTAT 58.003 32.000 0.00 0.00 36.16 1.89
2396 5377 6.265196 AGACACAAATTTTCAGCATGGAGTTA 59.735 34.615 0.00 0.00 36.16 2.24
2397 5378 5.069516 AGACACAAATTTTCAGCATGGAGTT 59.930 36.000 0.00 0.00 36.16 3.01
2398 5379 4.586001 AGACACAAATTTTCAGCATGGAGT 59.414 37.500 0.00 0.00 36.16 3.85
2399 5380 5.130292 AGACACAAATTTTCAGCATGGAG 57.870 39.130 0.00 0.00 36.16 3.86
2400 5381 5.291178 CAAGACACAAATTTTCAGCATGGA 58.709 37.500 0.00 0.00 36.16 3.41
2401 5382 4.449743 CCAAGACACAAATTTTCAGCATGG 59.550 41.667 0.00 0.00 36.16 3.66
2402 5383 4.449743 CCCAAGACACAAATTTTCAGCATG 59.550 41.667 0.00 0.00 37.54 4.06
2403 5384 4.634199 CCCAAGACACAAATTTTCAGCAT 58.366 39.130 0.00 0.00 0.00 3.79
2404 5385 3.740764 GCCCAAGACACAAATTTTCAGCA 60.741 43.478 0.00 0.00 0.00 4.41
2405 5386 2.802247 GCCCAAGACACAAATTTTCAGC 59.198 45.455 0.00 0.00 0.00 4.26
2406 5387 4.057406 TGCCCAAGACACAAATTTTCAG 57.943 40.909 0.00 0.00 0.00 3.02
2407 5388 4.081198 AGTTGCCCAAGACACAAATTTTCA 60.081 37.500 0.00 0.00 0.00 2.69
2408 5389 4.441792 AGTTGCCCAAGACACAAATTTTC 58.558 39.130 0.00 0.00 0.00 2.29
2409 5390 4.486125 AGTTGCCCAAGACACAAATTTT 57.514 36.364 0.00 0.00 0.00 1.82
2410 5391 4.486125 AAGTTGCCCAAGACACAAATTT 57.514 36.364 0.00 0.00 28.14 1.82
2411 5392 4.486125 AAAGTTGCCCAAGACACAAATT 57.514 36.364 0.00 0.00 33.48 1.82
2412 5393 4.162131 AGAAAAGTTGCCCAAGACACAAAT 59.838 37.500 0.00 0.00 0.00 2.32
2413 5394 3.513515 AGAAAAGTTGCCCAAGACACAAA 59.486 39.130 0.00 0.00 0.00 2.83
2414 5395 3.096092 AGAAAAGTTGCCCAAGACACAA 58.904 40.909 0.00 0.00 0.00 3.33
2415 5396 2.733956 AGAAAAGTTGCCCAAGACACA 58.266 42.857 0.00 0.00 0.00 3.72
2416 5397 3.304726 GCTAGAAAAGTTGCCCAAGACAC 60.305 47.826 0.00 0.00 0.00 3.67
2417 5398 2.884639 GCTAGAAAAGTTGCCCAAGACA 59.115 45.455 0.00 0.00 0.00 3.41
2418 5399 2.229062 GGCTAGAAAAGTTGCCCAAGAC 59.771 50.000 0.00 0.00 39.49 3.01
2419 5400 2.108250 AGGCTAGAAAAGTTGCCCAAGA 59.892 45.455 0.00 0.00 45.94 3.02
2420 5401 2.229784 CAGGCTAGAAAAGTTGCCCAAG 59.770 50.000 0.00 0.00 45.94 3.61
2421 5402 2.238521 CAGGCTAGAAAAGTTGCCCAA 58.761 47.619 0.00 0.00 45.94 4.12
2422 5403 1.909700 CAGGCTAGAAAAGTTGCCCA 58.090 50.000 0.00 0.00 45.94 5.36
2423 5404 0.528017 GCAGGCTAGAAAAGTTGCCC 59.472 55.000 0.00 0.00 45.94 5.36
2424 5405 1.068264 GTGCAGGCTAGAAAAGTTGCC 60.068 52.381 0.00 0.00 45.21 4.52
2425 5406 1.882623 AGTGCAGGCTAGAAAAGTTGC 59.117 47.619 0.00 0.00 37.99 4.17
2426 5407 3.565482 TGAAGTGCAGGCTAGAAAAGTTG 59.435 43.478 0.00 0.00 0.00 3.16
2427 5408 3.820557 TGAAGTGCAGGCTAGAAAAGTT 58.179 40.909 0.00 0.00 0.00 2.66
2428 5409 3.492102 TGAAGTGCAGGCTAGAAAAGT 57.508 42.857 0.00 0.00 0.00 2.66
2429 5410 5.048504 TCAAATGAAGTGCAGGCTAGAAAAG 60.049 40.000 0.00 0.00 0.00 2.27
2430 5411 4.826733 TCAAATGAAGTGCAGGCTAGAAAA 59.173 37.500 0.00 0.00 0.00 2.29
2431 5412 4.397420 TCAAATGAAGTGCAGGCTAGAAA 58.603 39.130 0.00 0.00 0.00 2.52
2432 5413 4.019792 TCAAATGAAGTGCAGGCTAGAA 57.980 40.909 0.00 0.00 0.00 2.10
2433 5414 3.701205 TCAAATGAAGTGCAGGCTAGA 57.299 42.857 0.00 0.00 0.00 2.43
2434 5415 3.755378 AGTTCAAATGAAGTGCAGGCTAG 59.245 43.478 2.77 0.00 36.43 3.42
2435 5416 3.754965 AGTTCAAATGAAGTGCAGGCTA 58.245 40.909 2.77 0.00 36.43 3.93
2436 5417 2.590821 AGTTCAAATGAAGTGCAGGCT 58.409 42.857 2.77 0.00 36.43 4.58
2437 5418 4.708726 ATAGTTCAAATGAAGTGCAGGC 57.291 40.909 12.61 0.00 38.13 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.