Multiple sequence alignment - TraesCS3B01G509600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G509600 chr3B 100.000 5710 0 0 1 5710 753680067 753674358 0.000000e+00 10545.0
1 TraesCS3B01G509600 chr3B 89.068 2104 142 40 2947 5001 753580281 753578217 0.000000e+00 2531.0
2 TraesCS3B01G509600 chr3B 86.012 1966 151 55 919 2834 753582162 753580271 0.000000e+00 1993.0
3 TraesCS3B01G509600 chr3B 81.250 560 66 21 5160 5710 753578037 753577508 3.180000e-112 416.0
4 TraesCS3B01G509600 chr3B 87.823 271 29 3 416 684 694098825 694099093 1.190000e-81 315.0
5 TraesCS3B01G509600 chr3B 82.958 311 36 11 5098 5400 752077931 752078232 1.220000e-66 265.0
6 TraesCS3B01G509600 chr3B 83.056 301 36 12 5110 5400 752047895 752048190 5.680000e-65 259.0
7 TraesCS3B01G509600 chr3B 79.224 361 54 11 4321 4669 752042550 752042901 1.240000e-56 231.0
8 TraesCS3B01G509600 chr3B 79.870 308 43 13 5098 5400 752038806 752039099 2.090000e-49 207.0
9 TraesCS3B01G509600 chr3B 83.333 114 18 1 5459 5571 752039104 752039217 2.810000e-18 104.0
10 TraesCS3B01G509600 chr3B 82.456 114 19 1 5459 5571 752048195 752048308 1.310000e-16 99.0
11 TraesCS3B01G509600 chr3D 95.218 4559 147 22 882 5409 565610650 565606132 0.000000e+00 7145.0
12 TraesCS3B01G509600 chr3D 86.312 4157 353 111 955 5001 565563814 565559764 0.000000e+00 4325.0
13 TraesCS3B01G509600 chr3D 82.143 560 63 14 5157 5710 565559587 565559059 4.060000e-121 446.0
14 TraesCS3B01G509600 chr3D 94.208 259 10 2 5453 5710 565606064 565605810 1.930000e-104 390.0
15 TraesCS3B01G509600 chr3D 84.507 284 24 7 135 418 565611076 565610813 4.390000e-66 263.0
16 TraesCS3B01G509600 chr3D 94.839 155 8 0 680 834 565610815 565610661 5.720000e-60 243.0
17 TraesCS3B01G509600 chr3D 81.413 269 48 2 417 683 168186562 168186294 9.630000e-53 219.0
18 TraesCS3B01G509600 chr3D 82.065 184 29 4 4593 4774 564202914 564203095 2.760000e-33 154.0
19 TraesCS3B01G509600 chr3D 87.000 100 12 1 5463 5561 564306519 564306618 1.680000e-20 111.0
20 TraesCS3B01G509600 chr3D 91.304 46 2 1 832 877 609449592 609449549 1.720000e-05 62.1
21 TraesCS3B01G509600 chr3D 96.774 31 1 0 5600 5630 567659890 567659920 1.000000e-02 52.8
22 TraesCS3B01G509600 chr3A 95.399 2521 91 14 2920 5434 699767497 699764996 0.000000e+00 3989.0
23 TraesCS3B01G509600 chr3A 88.729 2910 211 46 2147 4970 699755693 699752815 0.000000e+00 3448.0
24 TraesCS3B01G509600 chr3A 89.595 1211 68 18 908 2074 699769931 699768735 0.000000e+00 1485.0
25 TraesCS3B01G509600 chr3A 94.476 869 42 2 2061 2923 699768564 699767696 0.000000e+00 1334.0
26 TraesCS3B01G509600 chr3A 86.229 1111 86 27 961 2016 699756902 699755804 0.000000e+00 1142.0
27 TraesCS3B01G509600 chr3A 90.429 303 26 2 46 347 699832237 699831937 4.150000e-106 396.0
28 TraesCS3B01G509600 chr3A 92.218 257 15 2 5455 5710 699764810 699764558 5.440000e-95 359.0
29 TraesCS3B01G509600 chr3A 80.195 308 42 12 5098 5400 698856027 698856320 4.480000e-51 213.0
30 TraesCS3B01G509600 chr3A 82.609 184 28 4 4593 4774 698762328 698762509 5.920000e-35 159.0
31 TraesCS3B01G509600 chr3A 86.538 104 13 1 5459 5561 698856325 698856428 4.680000e-21 113.0
32 TraesCS3B01G509600 chr6D 80.298 2350 323 78 2469 4745 30097456 30095174 0.000000e+00 1646.0
33 TraesCS3B01G509600 chr6D 78.996 2171 290 78 2635 4741 29925643 29927711 0.000000e+00 1330.0
34 TraesCS3B01G509600 chr6D 77.302 2291 323 99 2468 4669 31472174 31474356 0.000000e+00 1168.0
35 TraesCS3B01G509600 chr6D 91.923 260 16 4 5453 5710 380451003 380451259 5.440000e-95 359.0
36 TraesCS3B01G509600 chr6D 81.473 421 54 13 2057 2465 31269927 31269519 1.980000e-84 324.0
37 TraesCS3B01G509600 chr6D 97.283 184 4 1 5267 5449 380450764 380450947 1.540000e-80 311.0
38 TraesCS3B01G509600 chr6D 81.701 388 46 14 2090 2465 31471755 31472129 3.340000e-77 300.0
39 TraesCS3B01G509600 chr6D 91.549 71 4 2 1557 1626 30098956 30098887 4.710000e-16 97.1
40 TraesCS3B01G509600 chr6D 86.905 84 9 2 1563 1645 29922989 29923071 6.090000e-15 93.5
41 TraesCS3B01G509600 chr6D 91.176 68 4 2 1560 1626 31270875 31270809 2.190000e-14 91.6
42 TraesCS3B01G509600 chr6D 89.333 75 5 3 1554 1626 31470648 31470721 2.190000e-14 91.6
43 TraesCS3B01G509600 chr6D 97.674 43 0 1 835 876 131992509 131992467 7.940000e-09 73.1
44 TraesCS3B01G509600 chr6D 95.122 41 0 1 835 875 102427848 102427810 4.780000e-06 63.9
45 TraesCS3B01G509600 chr6D 91.111 45 4 0 832 876 460808288 460808332 1.720000e-05 62.1
46 TraesCS3B01G509600 chr6D 90.698 43 4 0 832 874 436471682 436471640 2.220000e-04 58.4
47 TraesCS3B01G509600 chr6D 90.698 43 3 1 832 873 207234400 207234442 7.990000e-04 56.5
48 TraesCS3B01G509600 chr6D 88.889 45 3 1 832 876 456581535 456581577 3.000000e-03 54.7
49 TraesCS3B01G509600 chr6A 78.434 2810 379 116 2061 4745 45353839 45356546 0.000000e+00 1622.0
50 TraesCS3B01G509600 chr6A 79.760 2337 321 83 2469 4737 46698931 46696679 0.000000e+00 1555.0
51 TraesCS3B01G509600 chr6A 80.230 2170 284 70 2633 4741 32812115 32810030 0.000000e+00 1496.0
52 TraesCS3B01G509600 chr6A 79.412 2176 282 89 2640 4745 32885474 32883395 0.000000e+00 1384.0
53 TraesCS3B01G509600 chr6A 81.959 388 45 14 2090 2465 31753329 31752955 7.190000e-79 305.0
54 TraesCS3B01G509600 chr6A 78.713 404 64 13 2080 2473 32886009 32885618 3.420000e-62 250.0
55 TraesCS3B01G509600 chr6A 90.000 90 7 2 1557 1645 32813707 32813619 1.300000e-21 115.0
56 TraesCS3B01G509600 chrUn 78.284 2786 397 110 2061 4745 137913820 137911142 0.000000e+00 1602.0
57 TraesCS3B01G509600 chrUn 79.693 2349 319 83 2469 4741 27473492 27475758 0.000000e+00 1550.0
58 TraesCS3B01G509600 chrUn 88.889 81 7 2 1557 1636 68355846 68355925 1.310000e-16 99.0
59 TraesCS3B01G509600 chrUn 88.889 81 7 2 1557 1636 268239374 268239453 1.310000e-16 99.0
60 TraesCS3B01G509600 chrUn 88.095 84 8 2 1557 1639 312454537 312454455 1.310000e-16 99.0
61 TraesCS3B01G509600 chrUn 100.000 31 0 0 1703 1733 137914369 137914339 2.220000e-04 58.4
62 TraesCS3B01G509600 chrUn 100.000 29 0 0 836 864 35130708 35130736 3.000000e-03 54.7
63 TraesCS3B01G509600 chr6B 77.872 2707 375 113 2155 4745 50409913 50407315 0.000000e+00 1474.0
64 TraesCS3B01G509600 chr6B 79.261 2165 288 77 2641 4741 57733622 57731555 0.000000e+00 1362.0
65 TraesCS3B01G509600 chr6B 80.468 855 120 28 2640 3479 56396986 56396164 1.360000e-170 610.0
66 TraesCS3B01G509600 chr6B 91.538 260 19 3 5453 5710 565400559 565400301 7.040000e-94 355.0
67 TraesCS3B01G509600 chr6B 80.332 422 58 14 2057 2465 56379433 56379024 4.330000e-76 296.0
68 TraesCS3B01G509600 chr6B 95.082 183 9 0 5270 5452 565400794 565400612 7.240000e-74 289.0
69 TraesCS3B01G509600 chr6B 87.912 91 8 3 1557 1645 57736369 57736280 2.810000e-18 104.0
70 TraesCS3B01G509600 chr2D 78.355 2310 291 99 2530 4741 48565443 48567641 0.000000e+00 1303.0
71 TraesCS3B01G509600 chr2D 93.333 45 3 0 832 876 5112385 5112429 3.690000e-07 67.6
72 TraesCS3B01G509600 chr2D 93.333 45 1 2 835 877 636476145 636476101 1.330000e-06 65.8
73 TraesCS3B01G509600 chr2D 91.111 45 3 1 832 876 625153541 625153498 6.180000e-05 60.2
74 TraesCS3B01G509600 chr2B 84.391 1371 106 56 955 2258 760315907 760317236 0.000000e+00 1247.0
75 TraesCS3B01G509600 chr2B 88.172 186 19 3 483 666 19463690 19463506 9.630000e-53 219.0
76 TraesCS3B01G509600 chr2B 90.566 159 15 0 524 682 67549533 67549375 1.610000e-50 211.0
77 TraesCS3B01G509600 chr2B 88.372 129 11 4 417 541 43851069 43851197 9.910000e-33 152.0
78 TraesCS3B01G509600 chr2B 86.822 129 13 2 417 541 649313093 649313221 2.140000e-29 141.0
79 TraesCS3B01G509600 chr7B 80.723 747 102 24 3457 4177 680449709 680450439 1.400000e-150 544.0
80 TraesCS3B01G509600 chr7B 80.669 269 49 3 417 682 586328561 586328829 7.500000e-49 206.0
81 TraesCS3B01G509600 chr7B 80.000 275 53 2 411 683 29313115 29313389 9.700000e-48 202.0
82 TraesCS3B01G509600 chr7B 89.474 57 5 1 680 736 32411321 32411376 2.850000e-08 71.3
83 TraesCS3B01G509600 chr5D 86.517 267 35 1 417 682 57849798 57850064 5.600000e-75 292.0
84 TraesCS3B01G509600 chr5D 95.000 40 0 2 835 874 29159999 29159962 1.720000e-05 62.1
85 TraesCS3B01G509600 chr5D 89.362 47 3 2 832 876 280792444 280792398 2.220000e-04 58.4
86 TraesCS3B01G509600 chr5B 84.674 261 39 1 417 676 641430232 641430492 5.680000e-65 259.0
87 TraesCS3B01G509600 chr5B 79.870 308 51 5 2102 2405 660814069 660813769 1.250000e-51 215.0
88 TraesCS3B01G509600 chr5B 79.412 272 42 13 417 676 71715631 71715900 4.550000e-41 180.0
89 TraesCS3B01G509600 chr5B 89.024 82 5 4 1557 1636 664893147 664893226 1.310000e-16 99.0
90 TraesCS3B01G509600 chr5B 87.805 82 4 5 1549 1626 664802018 664802097 2.190000e-14 91.6
91 TraesCS3B01G509600 chr2A 97.826 46 1 0 832 877 709838691 709838646 4.740000e-11 80.5
92 TraesCS3B01G509600 chr7D 81.188 101 6 9 5168 5264 575488356 575488447 1.030000e-07 69.4
93 TraesCS3B01G509600 chr7D 88.462 52 5 1 832 883 553218046 553217996 1.720000e-05 62.1
94 TraesCS3B01G509600 chr4D 95.349 43 1 1 834 876 460707105 460707146 3.690000e-07 67.6
95 TraesCS3B01G509600 chr4D 90.698 43 2 1 832 874 407165126 407165086 7.990000e-04 56.5
96 TraesCS3B01G509600 chr4B 93.333 45 3 0 832 876 673112385 673112429 3.690000e-07 67.6
97 TraesCS3B01G509600 chr1B 95.349 43 0 1 834 876 301756664 301756624 3.690000e-07 67.6
98 TraesCS3B01G509600 chr1B 90.196 51 4 1 832 881 476928436 476928386 1.330000e-06 65.8
99 TraesCS3B01G509600 chr7A 91.837 49 1 2 835 883 581370376 581370331 1.330000e-06 65.8
100 TraesCS3B01G509600 chr1D 89.583 48 0 4 829 876 481935312 481935354 7.990000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G509600 chr3B 753674358 753680067 5709 True 10545.000000 10545 100.000000 1 5710 1 chr3B.!!$R1 5709
1 TraesCS3B01G509600 chr3B 753577508 753582162 4654 True 1646.666667 2531 85.443333 919 5710 3 chr3B.!!$R2 4791
2 TraesCS3B01G509600 chr3D 565559059 565563814 4755 True 2385.500000 4325 84.227500 955 5710 2 chr3D.!!$R3 4755
3 TraesCS3B01G509600 chr3D 565605810 565611076 5266 True 2010.250000 7145 92.193000 135 5710 4 chr3D.!!$R4 5575
4 TraesCS3B01G509600 chr3A 699752815 699756902 4087 True 2295.000000 3448 87.479000 961 4970 2 chr3A.!!$R2 4009
5 TraesCS3B01G509600 chr3A 699764558 699769931 5373 True 1791.750000 3989 92.922000 908 5710 4 chr3A.!!$R3 4802
6 TraesCS3B01G509600 chr6D 30095174 30098956 3782 True 871.550000 1646 85.923500 1557 4745 2 chr6D.!!$R4 3188
7 TraesCS3B01G509600 chr6D 29922989 29927711 4722 False 711.750000 1330 82.950500 1563 4741 2 chr6D.!!$F4 3178
8 TraesCS3B01G509600 chr6D 31470648 31474356 3708 False 519.866667 1168 82.778667 1554 4669 3 chr6D.!!$F5 3115
9 TraesCS3B01G509600 chr6D 31269519 31270875 1356 True 207.800000 324 86.324500 1560 2465 2 chr6D.!!$R5 905
10 TraesCS3B01G509600 chr6A 45353839 45356546 2707 False 1622.000000 1622 78.434000 2061 4745 1 chr6A.!!$F1 2684
11 TraesCS3B01G509600 chr6A 46696679 46698931 2252 True 1555.000000 1555 79.760000 2469 4737 1 chr6A.!!$R2 2268
12 TraesCS3B01G509600 chr6A 32883395 32886009 2614 True 817.000000 1384 79.062500 2080 4745 2 chr6A.!!$R4 2665
13 TraesCS3B01G509600 chr6A 32810030 32813707 3677 True 805.500000 1496 85.115000 1557 4741 2 chr6A.!!$R3 3184
14 TraesCS3B01G509600 chrUn 27473492 27475758 2266 False 1550.000000 1550 79.693000 2469 4741 1 chrUn.!!$F1 2272
15 TraesCS3B01G509600 chrUn 137911142 137914369 3227 True 830.200000 1602 89.142000 1703 4745 2 chrUn.!!$R2 3042
16 TraesCS3B01G509600 chr6B 50407315 50409913 2598 True 1474.000000 1474 77.872000 2155 4745 1 chr6B.!!$R1 2590
17 TraesCS3B01G509600 chr6B 57731555 57736369 4814 True 733.000000 1362 83.586500 1557 4741 2 chr6B.!!$R4 3184
18 TraesCS3B01G509600 chr6B 56396164 56396986 822 True 610.000000 610 80.468000 2640 3479 1 chr6B.!!$R3 839
19 TraesCS3B01G509600 chr2D 48565443 48567641 2198 False 1303.000000 1303 78.355000 2530 4741 1 chr2D.!!$F2 2211
20 TraesCS3B01G509600 chr2B 760315907 760317236 1329 False 1247.000000 1247 84.391000 955 2258 1 chr2B.!!$F3 1303
21 TraesCS3B01G509600 chr7B 680449709 680450439 730 False 544.000000 544 80.723000 3457 4177 1 chr7B.!!$F4 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.181350 GGATGCCCGATCCTGAAGTT 59.819 55.000 0.00 0.0 46.77 2.66 F
827 828 0.236449 GCAATGCAAGCAAACAAGCC 59.764 50.000 0.00 0.0 34.23 4.35 F
2063 3963 1.064463 TCATTGTTGATCCTGGCCTCC 60.064 52.381 3.32 0.0 0.00 4.30 F
2985 6739 2.032924 CCAGAGAACACGAAACCCAAAC 59.967 50.000 0.00 0.0 0.00 2.93 F
4011 7914 0.627451 AGATGGAAGAGGCATGGCAA 59.373 50.000 22.64 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 3959 1.272985 ACTGAGAGAAGACCCAGGAGG 60.273 57.143 0.0 0.0 43.78 4.30 R
2143 4656 1.561643 ATCAGGACACGACCTCATGT 58.438 50.000 0.0 0.0 38.32 3.21 R
4011 7914 2.616510 GCTATGCTGTTCCACTTCCACT 60.617 50.000 0.0 0.0 0.00 4.00 R
4605 8587 1.073199 GGTCACACTCACAAGGGGG 59.927 63.158 0.0 0.0 0.00 5.40 R
5518 9771 0.318441 TCAAGCAGAGGACAAGACCG 59.682 55.000 0.0 0.0 34.73 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.871238 CGGGCATTATACTAGTACAGATAATTT 57.129 33.333 4.31 0.00 0.00 1.82
36 37 8.822805 ACTAGTACAGATAATTTTTGGTCTCCA 58.177 33.333 0.00 0.00 0.00 3.86
37 38 9.319143 CTAGTACAGATAATTTTTGGTCTCCAG 57.681 37.037 0.00 0.00 33.81 3.86
38 39 5.904362 ACAGATAATTTTTGGTCTCCAGC 57.096 39.130 0.00 0.00 33.81 4.85
39 40 5.324409 ACAGATAATTTTTGGTCTCCAGCA 58.676 37.500 0.00 0.00 33.81 4.41
40 41 5.183904 ACAGATAATTTTTGGTCTCCAGCAC 59.816 40.000 0.00 0.00 33.81 4.40
41 42 4.706962 AGATAATTTTTGGTCTCCAGCACC 59.293 41.667 0.00 0.00 33.81 5.01
42 43 2.683211 ATTTTTGGTCTCCAGCACCT 57.317 45.000 0.00 0.00 33.81 4.00
43 44 1.691196 TTTTTGGTCTCCAGCACCTG 58.309 50.000 0.00 0.00 33.81 4.00
44 45 0.550914 TTTTGGTCTCCAGCACCTGT 59.449 50.000 0.00 0.00 33.81 4.00
45 46 1.429930 TTTGGTCTCCAGCACCTGTA 58.570 50.000 0.00 0.00 33.81 2.74
46 47 0.976641 TTGGTCTCCAGCACCTGTAG 59.023 55.000 0.00 0.00 33.81 2.74
47 48 0.904865 TGGTCTCCAGCACCTGTAGG 60.905 60.000 0.00 0.00 42.17 3.18
49 50 5.680449 TTGGTCTCCAGCACCTGTAGGTA 62.680 52.174 2.72 0.00 39.96 3.08
64 65 7.884816 CCTGTAGGTACGGTCAATATAAATG 57.115 40.000 0.00 0.00 0.00 2.32
65 66 7.439381 CCTGTAGGTACGGTCAATATAAATGT 58.561 38.462 0.00 0.00 0.00 2.71
66 67 7.929785 CCTGTAGGTACGGTCAATATAAATGTT 59.070 37.037 0.00 0.00 0.00 2.71
67 68 8.651391 TGTAGGTACGGTCAATATAAATGTTG 57.349 34.615 0.00 0.00 0.00 3.33
68 69 8.476447 TGTAGGTACGGTCAATATAAATGTTGA 58.524 33.333 0.00 0.00 35.88 3.18
69 70 9.485206 GTAGGTACGGTCAATATAAATGTTGAT 57.515 33.333 5.58 0.00 39.52 2.57
71 72 9.485206 AGGTACGGTCAATATAAATGTTGATAC 57.515 33.333 5.58 4.91 39.52 2.24
72 73 8.715088 GGTACGGTCAATATAAATGTTGATACC 58.285 37.037 11.63 11.63 39.52 2.73
73 74 7.416154 ACGGTCAATATAAATGTTGATACCG 57.584 36.000 20.88 20.88 45.67 4.02
74 75 6.073440 ACGGTCAATATAAATGTTGATACCGC 60.073 38.462 21.72 5.89 44.91 5.68
75 76 6.073494 CGGTCAATATAAATGTTGATACCGCA 60.073 38.462 14.96 0.00 39.97 5.69
76 77 7.519168 CGGTCAATATAAATGTTGATACCGCAA 60.519 37.037 14.96 0.00 39.97 4.85
77 78 8.296713 GGTCAATATAAATGTTGATACCGCAAT 58.703 33.333 5.58 0.00 39.52 3.56
78 79 9.329913 GTCAATATAAATGTTGATACCGCAATC 57.670 33.333 5.58 0.00 39.52 2.67
79 80 9.283768 TCAATATAAATGTTGATACCGCAATCT 57.716 29.630 0.00 0.00 33.78 2.40
80 81 9.897744 CAATATAAATGTTGATACCGCAATCTT 57.102 29.630 0.00 0.00 31.48 2.40
83 84 8.856490 ATAAATGTTGATACCGCAATCTTTTC 57.144 30.769 0.00 0.00 0.00 2.29
84 85 6.515272 AATGTTGATACCGCAATCTTTTCT 57.485 33.333 0.00 0.00 0.00 2.52
85 86 5.295431 TGTTGATACCGCAATCTTTTCTG 57.705 39.130 0.00 0.00 0.00 3.02
86 87 5.000591 TGTTGATACCGCAATCTTTTCTGA 58.999 37.500 0.00 0.00 0.00 3.27
87 88 5.647658 TGTTGATACCGCAATCTTTTCTGAT 59.352 36.000 0.00 0.00 0.00 2.90
88 89 5.739752 TGATACCGCAATCTTTTCTGATG 57.260 39.130 0.00 0.00 0.00 3.07
89 90 5.185454 TGATACCGCAATCTTTTCTGATGT 58.815 37.500 0.00 0.00 0.00 3.06
90 91 5.647658 TGATACCGCAATCTTTTCTGATGTT 59.352 36.000 0.00 0.00 0.00 2.71
91 92 4.425577 ACCGCAATCTTTTCTGATGTTC 57.574 40.909 0.00 0.00 0.00 3.18
92 93 3.820467 ACCGCAATCTTTTCTGATGTTCA 59.180 39.130 0.00 0.00 0.00 3.18
93 94 4.161333 CCGCAATCTTTTCTGATGTTCAC 58.839 43.478 0.00 0.00 0.00 3.18
94 95 4.083110 CCGCAATCTTTTCTGATGTTCACT 60.083 41.667 0.00 0.00 0.00 3.41
95 96 5.122239 CCGCAATCTTTTCTGATGTTCACTA 59.878 40.000 0.00 0.00 0.00 2.74
96 97 6.017933 CGCAATCTTTTCTGATGTTCACTAC 58.982 40.000 0.00 0.00 0.00 2.73
97 98 6.017933 GCAATCTTTTCTGATGTTCACTACG 58.982 40.000 0.00 0.00 0.00 3.51
98 99 6.347725 GCAATCTTTTCTGATGTTCACTACGT 60.348 38.462 0.00 0.00 0.00 3.57
99 100 6.712241 ATCTTTTCTGATGTTCACTACGTG 57.288 37.500 0.00 0.00 34.45 4.49
100 101 4.988540 TCTTTTCTGATGTTCACTACGTGG 59.011 41.667 0.00 0.00 33.87 4.94
101 102 3.313012 TTCTGATGTTCACTACGTGGG 57.687 47.619 3.26 0.00 33.87 4.61
102 103 1.548719 TCTGATGTTCACTACGTGGGG 59.451 52.381 3.26 0.00 33.87 4.96
103 104 1.275291 CTGATGTTCACTACGTGGGGT 59.725 52.381 0.00 0.00 33.87 4.95
104 105 2.494471 CTGATGTTCACTACGTGGGGTA 59.506 50.000 0.00 0.00 33.87 3.69
105 106 3.101437 TGATGTTCACTACGTGGGGTAT 58.899 45.455 0.00 0.00 33.87 2.73
106 107 3.516300 TGATGTTCACTACGTGGGGTATT 59.484 43.478 0.00 0.00 33.87 1.89
107 108 3.322211 TGTTCACTACGTGGGGTATTG 57.678 47.619 0.00 0.00 34.14 1.90
108 109 2.027929 TGTTCACTACGTGGGGTATTGG 60.028 50.000 0.00 0.00 33.77 3.16
109 110 1.941377 TCACTACGTGGGGTATTGGT 58.059 50.000 0.00 0.00 33.77 3.67
110 111 2.259012 TCACTACGTGGGGTATTGGTT 58.741 47.619 0.00 0.00 33.77 3.67
111 112 2.638855 TCACTACGTGGGGTATTGGTTT 59.361 45.455 0.00 0.00 33.77 3.27
112 113 3.004862 CACTACGTGGGGTATTGGTTTC 58.995 50.000 3.26 0.00 30.41 2.78
113 114 2.638855 ACTACGTGGGGTATTGGTTTCA 59.361 45.455 3.26 0.00 0.00 2.69
114 115 2.891191 ACGTGGGGTATTGGTTTCAT 57.109 45.000 0.00 0.00 0.00 2.57
115 116 3.163616 ACGTGGGGTATTGGTTTCATT 57.836 42.857 0.00 0.00 0.00 2.57
116 117 2.823154 ACGTGGGGTATTGGTTTCATTG 59.177 45.455 0.00 0.00 0.00 2.82
117 118 2.416701 CGTGGGGTATTGGTTTCATTGC 60.417 50.000 0.00 0.00 0.00 3.56
118 119 2.831526 GTGGGGTATTGGTTTCATTGCT 59.168 45.455 0.00 0.00 0.00 3.91
119 120 4.020543 GTGGGGTATTGGTTTCATTGCTA 58.979 43.478 0.00 0.00 0.00 3.49
120 121 4.097892 GTGGGGTATTGGTTTCATTGCTAG 59.902 45.833 0.00 0.00 0.00 3.42
121 122 3.636764 GGGGTATTGGTTTCATTGCTAGG 59.363 47.826 0.00 0.00 0.00 3.02
122 123 4.532834 GGGTATTGGTTTCATTGCTAGGA 58.467 43.478 0.00 0.00 0.00 2.94
123 124 4.953579 GGGTATTGGTTTCATTGCTAGGAA 59.046 41.667 0.00 0.00 0.00 3.36
124 125 5.598417 GGGTATTGGTTTCATTGCTAGGAAT 59.402 40.000 3.24 3.24 0.00 3.01
125 126 6.239036 GGGTATTGGTTTCATTGCTAGGAATC 60.239 42.308 6.49 0.00 0.00 2.52
126 127 6.321181 GGTATTGGTTTCATTGCTAGGAATCA 59.679 38.462 6.49 0.00 0.00 2.57
127 128 5.643379 TTGGTTTCATTGCTAGGAATCAC 57.357 39.130 6.49 4.48 0.00 3.06
128 129 4.016444 TGGTTTCATTGCTAGGAATCACC 58.984 43.478 16.81 16.81 39.35 4.02
129 130 3.065371 GGTTTCATTGCTAGGAATCACCG 59.935 47.826 6.49 0.00 44.74 4.94
130 131 3.627395 TTCATTGCTAGGAATCACCGT 57.373 42.857 6.49 0.00 44.74 4.83
131 132 3.179443 TCATTGCTAGGAATCACCGTC 57.821 47.619 6.49 0.00 44.74 4.79
132 133 1.860950 CATTGCTAGGAATCACCGTCG 59.139 52.381 6.49 0.00 44.74 5.12
133 134 1.179152 TTGCTAGGAATCACCGTCGA 58.821 50.000 0.00 0.00 44.74 4.20
177 178 0.181350 GGATGCCCGATCCTGAAGTT 59.819 55.000 0.00 0.00 46.77 2.66
179 180 0.620556 ATGCCCGATCCTGAAGTTGT 59.379 50.000 0.00 0.00 0.00 3.32
207 208 3.380479 TTAGCTATTTCGGCGTGCTAT 57.620 42.857 6.85 0.00 36.34 2.97
226 227 5.947228 CTATGGAAGCTTGTCAAACTGAA 57.053 39.130 2.10 0.00 0.00 3.02
227 228 4.843220 ATGGAAGCTTGTCAAACTGAAG 57.157 40.909 2.10 0.00 0.00 3.02
228 229 2.951642 TGGAAGCTTGTCAAACTGAAGG 59.048 45.455 2.10 0.00 0.00 3.46
229 230 2.952310 GGAAGCTTGTCAAACTGAAGGT 59.048 45.455 2.10 0.00 0.00 3.50
230 231 3.003793 GGAAGCTTGTCAAACTGAAGGTC 59.996 47.826 2.10 0.00 0.00 3.85
231 232 3.567478 AGCTTGTCAAACTGAAGGTCT 57.433 42.857 0.00 0.00 0.00 3.85
232 233 3.209410 AGCTTGTCAAACTGAAGGTCTG 58.791 45.455 0.00 0.00 0.00 3.51
233 234 2.287248 GCTTGTCAAACTGAAGGTCTGC 60.287 50.000 0.00 0.00 0.00 4.26
234 235 3.209410 CTTGTCAAACTGAAGGTCTGCT 58.791 45.455 0.00 0.00 0.00 4.24
235 236 4.380531 CTTGTCAAACTGAAGGTCTGCTA 58.619 43.478 0.00 0.00 0.00 3.49
236 237 4.623932 TGTCAAACTGAAGGTCTGCTAT 57.376 40.909 0.00 0.00 0.00 2.97
237 238 4.569943 TGTCAAACTGAAGGTCTGCTATC 58.430 43.478 0.00 0.00 0.00 2.08
245 246 3.958147 TGAAGGTCTGCTATCCGTCAATA 59.042 43.478 7.46 0.00 38.73 1.90
248 249 3.259374 AGGTCTGCTATCCGTCAATATGG 59.741 47.826 0.00 0.00 0.00 2.74
250 251 2.632512 TCTGCTATCCGTCAATATGGCA 59.367 45.455 0.00 0.00 37.26 4.92
252 253 4.005650 CTGCTATCCGTCAATATGGCATT 58.994 43.478 4.78 0.00 38.65 3.56
256 257 5.124457 GCTATCCGTCAATATGGCATTTGAT 59.876 40.000 20.21 9.38 34.60 2.57
270 271 5.014808 GCATTTGATTGCCTTTCATAGGT 57.985 39.130 0.00 0.00 46.61 3.08
280 281 4.473196 TGCCTTTCATAGGTGTCCAGAATA 59.527 41.667 0.00 0.00 46.61 1.75
285 286 9.627123 CCTTTCATAGGTGTCCAGAATAAAATA 57.373 33.333 0.00 0.00 39.39 1.40
314 315 4.656112 CCCAGTATCACTCAAGATTAGGGT 59.344 45.833 0.00 0.00 32.22 4.34
324 325 5.424252 ACTCAAGATTAGGGTCCGTGATTTA 59.576 40.000 0.00 0.00 0.00 1.40
343 344 6.363357 TGATTTATGATGTCAAGTATCTCGCG 59.637 38.462 0.00 0.00 0.00 5.87
363 364 0.810426 TCTGGCGTTGCACGTTGTTA 60.810 50.000 9.76 0.00 44.73 2.41
367 368 1.711824 GGCGTTGCACGTTGTTATTTC 59.288 47.619 9.76 0.00 44.73 2.17
418 419 4.043037 AGGCACATAAGTTAGCTCGTAC 57.957 45.455 0.00 0.00 0.00 3.67
419 420 3.700038 AGGCACATAAGTTAGCTCGTACT 59.300 43.478 0.00 0.00 0.00 2.73
420 421 4.043073 GGCACATAAGTTAGCTCGTACTC 58.957 47.826 0.00 0.00 0.00 2.59
421 422 4.043073 GCACATAAGTTAGCTCGTACTCC 58.957 47.826 0.00 0.00 0.00 3.85
422 423 4.608951 CACATAAGTTAGCTCGTACTCCC 58.391 47.826 0.00 0.00 0.00 4.30
423 424 4.338682 CACATAAGTTAGCTCGTACTCCCT 59.661 45.833 0.00 0.00 0.00 4.20
424 425 4.579753 ACATAAGTTAGCTCGTACTCCCTC 59.420 45.833 0.00 0.00 0.00 4.30
425 426 2.055684 AGTTAGCTCGTACTCCCTCC 57.944 55.000 0.00 0.00 0.00 4.30
426 427 0.662085 GTTAGCTCGTACTCCCTCCG 59.338 60.000 0.00 0.00 0.00 4.63
427 428 0.254178 TTAGCTCGTACTCCCTCCGT 59.746 55.000 0.00 0.00 0.00 4.69
428 429 0.254178 TAGCTCGTACTCCCTCCGTT 59.746 55.000 0.00 0.00 0.00 4.44
429 430 1.031029 AGCTCGTACTCCCTCCGTTC 61.031 60.000 0.00 0.00 0.00 3.95
430 431 2.002509 GCTCGTACTCCCTCCGTTCC 62.003 65.000 0.00 0.00 0.00 3.62
431 432 0.394080 CTCGTACTCCCTCCGTTCCT 60.394 60.000 0.00 0.00 0.00 3.36
432 433 0.911769 TCGTACTCCCTCCGTTCCTA 59.088 55.000 0.00 0.00 0.00 2.94
433 434 1.281867 TCGTACTCCCTCCGTTCCTAA 59.718 52.381 0.00 0.00 0.00 2.69
434 435 2.094675 CGTACTCCCTCCGTTCCTAAA 58.905 52.381 0.00 0.00 0.00 1.85
435 436 2.692041 CGTACTCCCTCCGTTCCTAAAT 59.308 50.000 0.00 0.00 0.00 1.40
436 437 3.885297 CGTACTCCCTCCGTTCCTAAATA 59.115 47.826 0.00 0.00 0.00 1.40
437 438 4.261363 CGTACTCCCTCCGTTCCTAAATAC 60.261 50.000 0.00 0.00 0.00 1.89
438 439 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
439 440 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
440 441 3.303049 TCCCTCCGTTCCTAAATACTCC 58.697 50.000 0.00 0.00 0.00 3.85
441 442 2.367894 CCCTCCGTTCCTAAATACTCCC 59.632 54.545 0.00 0.00 0.00 4.30
442 443 3.306613 CCTCCGTTCCTAAATACTCCCT 58.693 50.000 0.00 0.00 0.00 4.20
443 444 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
444 445 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
445 446 2.035576 CCGTTCCTAAATACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
446 447 2.692041 CGTTCCTAAATACTCCCTCCGT 59.308 50.000 0.00 0.00 0.00 4.69
447 448 3.131755 CGTTCCTAAATACTCCCTCCGTT 59.868 47.826 0.00 0.00 0.00 4.44
448 449 4.339247 CGTTCCTAAATACTCCCTCCGTTA 59.661 45.833 0.00 0.00 0.00 3.18
449 450 5.506982 CGTTCCTAAATACTCCCTCCGTTAG 60.507 48.000 0.00 0.00 0.00 2.34
450 451 5.393068 TCCTAAATACTCCCTCCGTTAGA 57.607 43.478 0.00 0.00 0.00 2.10
451 452 5.769835 TCCTAAATACTCCCTCCGTTAGAA 58.230 41.667 0.00 0.00 0.00 2.10
452 453 6.197168 TCCTAAATACTCCCTCCGTTAGAAA 58.803 40.000 0.00 0.00 0.00 2.52
453 454 6.842807 TCCTAAATACTCCCTCCGTTAGAAAT 59.157 38.462 0.00 0.00 0.00 2.17
454 455 7.346436 TCCTAAATACTCCCTCCGTTAGAAATT 59.654 37.037 0.00 0.00 0.00 1.82
455 456 8.645110 CCTAAATACTCCCTCCGTTAGAAATTA 58.355 37.037 0.00 0.00 0.00 1.40
456 457 9.473640 CTAAATACTCCCTCCGTTAGAAATTAC 57.526 37.037 0.00 0.00 0.00 1.89
457 458 7.672122 AATACTCCCTCCGTTAGAAATTACT 57.328 36.000 0.00 0.00 0.00 2.24
458 459 7.672122 ATACTCCCTCCGTTAGAAATTACTT 57.328 36.000 0.00 0.00 0.00 2.24
459 460 5.731591 ACTCCCTCCGTTAGAAATTACTTG 58.268 41.667 0.00 0.00 0.00 3.16
460 461 5.247792 ACTCCCTCCGTTAGAAATTACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
461 462 5.727434 TCCCTCCGTTAGAAATTACTTGTC 58.273 41.667 0.00 0.00 0.00 3.18
462 463 5.246656 TCCCTCCGTTAGAAATTACTTGTCA 59.753 40.000 0.00 0.00 0.00 3.58
463 464 5.350640 CCCTCCGTTAGAAATTACTTGTCAC 59.649 44.000 0.00 0.00 0.00 3.67
464 465 5.929992 CCTCCGTTAGAAATTACTTGTCACA 59.070 40.000 0.00 0.00 0.00 3.58
465 466 6.425721 CCTCCGTTAGAAATTACTTGTCACAA 59.574 38.462 0.00 0.00 0.00 3.33
466 467 7.041644 CCTCCGTTAGAAATTACTTGTCACAAA 60.042 37.037 0.00 0.00 0.00 2.83
467 468 8.211116 TCCGTTAGAAATTACTTGTCACAAAA 57.789 30.769 0.00 0.00 0.00 2.44
468 469 8.675504 TCCGTTAGAAATTACTTGTCACAAAAA 58.324 29.630 0.00 0.00 0.00 1.94
469 470 9.458374 CCGTTAGAAATTACTTGTCACAAAAAT 57.542 29.630 0.00 0.00 0.00 1.82
475 476 9.584839 GAAATTACTTGTCACAAAAATGAATGC 57.415 29.630 0.00 0.00 0.00 3.56
476 477 8.659925 AATTACTTGTCACAAAAATGAATGCA 57.340 26.923 0.00 0.00 0.00 3.96
477 478 8.836268 ATTACTTGTCACAAAAATGAATGCAT 57.164 26.923 0.00 0.00 35.92 3.96
478 479 6.774354 ACTTGTCACAAAAATGAATGCATC 57.226 33.333 0.00 0.00 32.35 3.91
479 480 6.518493 ACTTGTCACAAAAATGAATGCATCT 58.482 32.000 0.00 0.00 32.35 2.90
480 481 7.660112 ACTTGTCACAAAAATGAATGCATCTA 58.340 30.769 0.00 0.00 32.35 1.98
481 482 7.596248 ACTTGTCACAAAAATGAATGCATCTAC 59.404 33.333 0.00 0.00 32.35 2.59
482 483 6.979465 TGTCACAAAAATGAATGCATCTACA 58.021 32.000 0.00 1.38 32.35 2.74
483 484 7.432059 TGTCACAAAAATGAATGCATCTACAA 58.568 30.769 0.00 0.00 32.35 2.41
484 485 7.381948 TGTCACAAAAATGAATGCATCTACAAC 59.618 33.333 0.00 0.00 32.35 3.32
485 486 7.596248 GTCACAAAAATGAATGCATCTACAACT 59.404 33.333 0.00 0.00 32.35 3.16
486 487 8.791675 TCACAAAAATGAATGCATCTACAACTA 58.208 29.630 0.00 0.00 32.35 2.24
487 488 9.409312 CACAAAAATGAATGCATCTACAACTAA 57.591 29.630 0.00 0.00 32.35 2.24
488 489 9.979578 ACAAAAATGAATGCATCTACAACTAAA 57.020 25.926 0.00 0.00 32.35 1.85
531 532 5.987777 TTTTGGACGAGTAATTTCGAACA 57.012 34.783 6.54 2.55 43.03 3.18
532 533 5.987777 TTTGGACGAGTAATTTCGAACAA 57.012 34.783 6.54 7.71 43.03 2.83
533 534 5.987777 TTGGACGAGTAATTTCGAACAAA 57.012 34.783 6.54 0.00 43.03 2.83
534 535 5.585500 TGGACGAGTAATTTCGAACAAAG 57.415 39.130 6.54 0.00 43.03 2.77
535 536 4.449743 TGGACGAGTAATTTCGAACAAAGG 59.550 41.667 6.54 0.00 43.03 3.11
536 537 4.142966 GGACGAGTAATTTCGAACAAAGGG 60.143 45.833 6.54 0.00 43.03 3.95
537 538 4.634199 ACGAGTAATTTCGAACAAAGGGA 58.366 39.130 6.54 0.00 43.03 4.20
538 539 4.689345 ACGAGTAATTTCGAACAAAGGGAG 59.311 41.667 6.54 0.00 43.03 4.30
539 540 4.689345 CGAGTAATTTCGAACAAAGGGAGT 59.311 41.667 0.00 0.00 43.03 3.85
540 541 5.865552 CGAGTAATTTCGAACAAAGGGAGTA 59.134 40.000 0.00 0.00 43.03 2.59
541 542 6.534079 CGAGTAATTTCGAACAAAGGGAGTAT 59.466 38.462 0.00 0.00 43.03 2.12
542 543 7.703621 CGAGTAATTTCGAACAAAGGGAGTATA 59.296 37.037 0.00 0.00 43.03 1.47
543 544 9.374838 GAGTAATTTCGAACAAAGGGAGTATAA 57.625 33.333 0.00 0.00 0.00 0.98
544 545 9.379791 AGTAATTTCGAACAAAGGGAGTATAAG 57.620 33.333 0.00 0.00 0.00 1.73
545 546 9.159364 GTAATTTCGAACAAAGGGAGTATAAGT 57.841 33.333 0.00 0.00 0.00 2.24
546 547 7.845066 ATTTCGAACAAAGGGAGTATAAGTC 57.155 36.000 0.00 0.00 0.00 3.01
547 548 6.600882 TTCGAACAAAGGGAGTATAAGTCT 57.399 37.500 0.00 0.00 0.00 3.24
548 549 6.600882 TCGAACAAAGGGAGTATAAGTCTT 57.399 37.500 0.00 0.00 0.00 3.01
549 550 7.001099 TCGAACAAAGGGAGTATAAGTCTTT 57.999 36.000 0.00 0.00 0.00 2.52
550 551 6.872020 TCGAACAAAGGGAGTATAAGTCTTTG 59.128 38.462 11.15 11.15 45.52 2.77
556 557 9.720769 CAAAGGGAGTATAAGTCTTTGTAAAGA 57.279 33.333 3.05 3.05 42.41 2.52
568 569 9.832445 AAGTCTTTGTAAAGATTTCACTGTAGA 57.168 29.630 9.98 0.00 45.83 2.59
569 570 9.262358 AGTCTTTGTAAAGATTTCACTGTAGAC 57.738 33.333 9.98 0.00 45.83 2.59
570 571 8.496751 GTCTTTGTAAAGATTTCACTGTAGACC 58.503 37.037 9.98 0.00 45.83 3.85
571 572 8.208224 TCTTTGTAAAGATTTCACTGTAGACCA 58.792 33.333 3.05 0.00 39.95 4.02
572 573 7.724305 TTGTAAAGATTTCACTGTAGACCAC 57.276 36.000 0.00 0.00 0.00 4.16
573 574 6.822442 TGTAAAGATTTCACTGTAGACCACA 58.178 36.000 0.00 0.00 35.30 4.17
574 575 7.450074 TGTAAAGATTTCACTGTAGACCACAT 58.550 34.615 0.00 0.00 36.29 3.21
575 576 8.590204 TGTAAAGATTTCACTGTAGACCACATA 58.410 33.333 0.00 0.00 36.29 2.29
576 577 7.907214 AAAGATTTCACTGTAGACCACATAC 57.093 36.000 0.00 0.00 36.29 2.39
577 578 5.651530 AGATTTCACTGTAGACCACATACG 58.348 41.667 0.00 0.00 36.29 3.06
578 579 3.861276 TTCACTGTAGACCACATACGG 57.139 47.619 0.00 0.00 36.29 4.02
579 580 3.076079 TCACTGTAGACCACATACGGA 57.924 47.619 0.00 0.00 36.29 4.69
580 581 3.628008 TCACTGTAGACCACATACGGAT 58.372 45.455 0.00 0.00 36.29 4.18
581 582 3.380320 TCACTGTAGACCACATACGGATG 59.620 47.826 5.94 5.94 36.29 3.51
583 584 4.337274 CACTGTAGACCACATACGGATGTA 59.663 45.833 14.23 0.00 44.82 2.29
584 585 5.009710 CACTGTAGACCACATACGGATGTAT 59.990 44.000 14.23 4.48 44.82 2.29
585 586 5.241064 ACTGTAGACCACATACGGATGTATC 59.759 44.000 14.23 14.03 44.82 2.24
586 587 5.382616 TGTAGACCACATACGGATGTATCT 58.617 41.667 23.37 23.37 44.82 1.98
587 588 6.536447 TGTAGACCACATACGGATGTATCTA 58.464 40.000 21.81 21.81 44.82 1.98
588 589 6.653740 TGTAGACCACATACGGATGTATCTAG 59.346 42.308 24.44 10.17 44.82 2.43
589 590 5.877491 AGACCACATACGGATGTATCTAGA 58.123 41.667 20.19 0.00 44.82 2.43
590 591 6.486056 AGACCACATACGGATGTATCTAGAT 58.514 40.000 20.19 10.73 44.82 1.98
591 592 6.375736 AGACCACATACGGATGTATCTAGATG 59.624 42.308 20.19 4.62 44.82 2.90
592 593 5.105716 ACCACATACGGATGTATCTAGATGC 60.106 44.000 14.23 14.54 44.82 3.91
593 594 5.105756 CCACATACGGATGTATCTAGATGCA 60.106 44.000 23.38 23.38 44.82 3.96
594 595 6.406288 CCACATACGGATGTATCTAGATGCAT 60.406 42.308 29.54 29.54 44.82 3.96
595 596 7.038048 CACATACGGATGTATCTAGATGCATT 58.962 38.462 29.66 19.73 44.82 3.56
596 597 7.547019 CACATACGGATGTATCTAGATGCATTT 59.453 37.037 29.66 21.00 44.82 2.32
597 598 8.097038 ACATACGGATGTATCTAGATGCATTTT 58.903 33.333 29.66 20.74 44.77 1.82
598 599 9.586435 CATACGGATGTATCTAGATGCATTTTA 57.414 33.333 29.66 21.80 42.77 1.52
599 600 9.809096 ATACGGATGTATCTAGATGCATTTTAG 57.191 33.333 29.66 22.88 42.77 1.85
600 601 7.896811 ACGGATGTATCTAGATGCATTTTAGA 58.103 34.615 29.66 18.53 42.77 2.10
601 602 8.031864 ACGGATGTATCTAGATGCATTTTAGAG 58.968 37.037 29.66 20.36 42.77 2.43
602 603 8.031864 CGGATGTATCTAGATGCATTTTAGAGT 58.968 37.037 29.66 12.13 42.77 3.24
613 614 9.624373 AGATGCATTTTAGAGTATTGATTCACT 57.376 29.630 0.00 0.00 0.00 3.41
614 615 9.875675 GATGCATTTTAGAGTATTGATTCACTC 57.124 33.333 0.00 0.00 41.25 3.51
615 616 8.791327 TGCATTTTAGAGTATTGATTCACTCA 57.209 30.769 4.70 0.00 42.99 3.41
616 617 9.399797 TGCATTTTAGAGTATTGATTCACTCAT 57.600 29.630 4.70 0.00 42.99 2.90
622 623 7.934855 AGAGTATTGATTCACTCATTTTGCT 57.065 32.000 4.70 0.00 42.99 3.91
623 624 7.983307 AGAGTATTGATTCACTCATTTTGCTC 58.017 34.615 4.70 0.00 42.99 4.26
624 625 7.066766 AGAGTATTGATTCACTCATTTTGCTCC 59.933 37.037 4.70 0.00 42.99 4.70
625 626 4.424061 TTGATTCACTCATTTTGCTCCG 57.576 40.909 0.00 0.00 32.72 4.63
626 627 3.411446 TGATTCACTCATTTTGCTCCGT 58.589 40.909 0.00 0.00 0.00 4.69
627 628 4.574892 TGATTCACTCATTTTGCTCCGTA 58.425 39.130 0.00 0.00 0.00 4.02
628 629 5.185454 TGATTCACTCATTTTGCTCCGTAT 58.815 37.500 0.00 0.00 0.00 3.06
629 630 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
630 631 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
631 632 3.684305 TCACTCATTTTGCTCCGTATGTG 59.316 43.478 0.00 0.00 0.00 3.21
632 633 3.009723 ACTCATTTTGCTCCGTATGTGG 58.990 45.455 0.00 0.00 0.00 4.17
633 634 3.009723 CTCATTTTGCTCCGTATGTGGT 58.990 45.455 0.00 0.00 0.00 4.16
634 635 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
635 636 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
636 637 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
637 638 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
638 639 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
639 640 1.686587 TGCTCCGTATGTGGTCCATAG 59.313 52.381 0.00 0.00 36.71 2.23
640 641 1.687123 GCTCCGTATGTGGTCCATAGT 59.313 52.381 0.00 0.00 36.71 2.12
641 642 2.545952 GCTCCGTATGTGGTCCATAGTG 60.546 54.545 0.00 0.00 36.71 2.74
642 643 2.035961 CTCCGTATGTGGTCCATAGTGG 59.964 54.545 0.00 0.00 36.71 4.00
643 644 2.036387 CCGTATGTGGTCCATAGTGGA 58.964 52.381 0.00 0.00 45.98 4.02
689 690 3.791973 AATGGAGAGAGTAGTTGCGAG 57.208 47.619 0.00 0.00 0.00 5.03
712 713 8.520258 CGAGCATGTTGTAAATTATTTTTACCG 58.480 33.333 0.00 0.00 34.81 4.02
827 828 0.236449 GCAATGCAAGCAAACAAGCC 59.764 50.000 0.00 0.00 34.23 4.35
834 835 2.355444 GCAAGCAAACAAGCCAAAACAT 59.645 40.909 0.00 0.00 34.23 2.71
836 837 3.540314 AGCAAACAAGCCAAAACATGA 57.460 38.095 0.00 0.00 34.23 3.07
837 838 3.197265 AGCAAACAAGCCAAAACATGAC 58.803 40.909 0.00 0.00 34.23 3.06
838 839 2.935201 GCAAACAAGCCAAAACATGACA 59.065 40.909 0.00 0.00 0.00 3.58
839 840 3.242381 GCAAACAAGCCAAAACATGACAC 60.242 43.478 0.00 0.00 0.00 3.67
841 842 4.405116 AACAAGCCAAAACATGACACAT 57.595 36.364 0.00 0.00 0.00 3.21
842 843 3.719924 ACAAGCCAAAACATGACACATG 58.280 40.909 0.00 9.72 0.00 3.21
843 844 3.132646 ACAAGCCAAAACATGACACATGT 59.867 39.130 10.94 10.94 0.00 3.21
844 845 3.374220 AGCCAAAACATGACACATGTG 57.626 42.857 24.25 24.25 31.80 3.21
845 846 2.036217 AGCCAAAACATGACACATGTGG 59.964 45.455 28.64 13.84 34.19 4.17
847 848 3.005261 GCCAAAACATGACACATGTGGTA 59.995 43.478 28.64 17.42 34.19 3.25
848 849 4.500545 GCCAAAACATGACACATGTGGTAA 60.501 41.667 28.64 14.42 34.19 2.85
849 850 5.221880 CCAAAACATGACACATGTGGTAAG 58.778 41.667 28.64 17.60 34.19 2.34
850 851 4.503741 AAACATGACACATGTGGTAAGC 57.496 40.909 28.64 13.03 34.19 3.09
852 853 3.485394 ACATGACACATGTGGTAAGCAA 58.515 40.909 28.64 7.21 34.19 3.91
853 854 4.081406 ACATGACACATGTGGTAAGCAAT 58.919 39.130 28.64 5.90 34.19 3.56
854 855 4.156556 ACATGACACATGTGGTAAGCAATC 59.843 41.667 28.64 14.99 34.19 2.67
855 856 3.081061 TGACACATGTGGTAAGCAATCC 58.919 45.455 28.64 6.08 34.19 3.01
856 857 3.081061 GACACATGTGGTAAGCAATCCA 58.919 45.455 28.64 0.00 34.19 3.41
857 858 3.495331 ACACATGTGGTAAGCAATCCAA 58.505 40.909 28.64 0.00 35.38 3.53
858 859 3.894427 ACACATGTGGTAAGCAATCCAAA 59.106 39.130 28.64 0.00 35.38 3.28
859 860 4.236935 CACATGTGGTAAGCAATCCAAAC 58.763 43.478 18.51 0.00 35.38 2.93
860 861 4.022068 CACATGTGGTAAGCAATCCAAACT 60.022 41.667 18.51 0.00 35.38 2.66
861 862 5.182950 CACATGTGGTAAGCAATCCAAACTA 59.817 40.000 18.51 0.00 35.38 2.24
862 863 5.951747 ACATGTGGTAAGCAATCCAAACTAT 59.048 36.000 0.00 0.00 35.38 2.12
863 864 6.437162 ACATGTGGTAAGCAATCCAAACTATT 59.563 34.615 0.00 0.00 35.38 1.73
864 865 6.909550 TGTGGTAAGCAATCCAAACTATTT 57.090 33.333 0.00 0.00 35.38 1.40
865 866 8.465999 CATGTGGTAAGCAATCCAAACTATTTA 58.534 33.333 0.00 0.00 35.38 1.40
866 867 8.588290 TGTGGTAAGCAATCCAAACTATTTAT 57.412 30.769 0.00 0.00 35.38 1.40
867 868 8.465999 TGTGGTAAGCAATCCAAACTATTTATG 58.534 33.333 0.00 0.00 35.38 1.90
868 869 8.682710 GTGGTAAGCAATCCAAACTATTTATGA 58.317 33.333 0.00 0.00 35.38 2.15
869 870 9.249053 TGGTAAGCAATCCAAACTATTTATGAA 57.751 29.630 0.00 0.00 0.00 2.57
1045 1058 1.811266 CACGCCCCTCACATTCTCG 60.811 63.158 0.00 0.00 0.00 4.04
1047 1060 2.586792 GCCCCTCACATTCTCGCT 59.413 61.111 0.00 0.00 0.00 4.93
1917 2215 2.683211 ATGTGGGGAAATATGAGGGC 57.317 50.000 0.00 0.00 0.00 5.19
2016 3696 6.928348 TTCAGTGTATAGAAGGAACCTTGA 57.072 37.500 11.02 0.00 36.26 3.02
2059 3959 3.194116 ACACATTCATTGTTGATCCTGGC 59.806 43.478 0.00 0.00 36.00 4.85
2063 3963 1.064463 TCATTGTTGATCCTGGCCTCC 60.064 52.381 3.32 0.00 0.00 4.30
2143 4656 4.962995 TGTTGTCTGTAAAATGGGGGAAAA 59.037 37.500 0.00 0.00 0.00 2.29
2207 4749 5.046014 AGAGCCTGAAGTCAAATGTATGAGT 60.046 40.000 0.00 0.00 34.46 3.41
2235 4781 7.393234 TCCTCCGTCAAAAGATTTTGTTATCAT 59.607 33.333 15.58 0.00 45.77 2.45
2426 4988 6.969993 TTAAATAGTTGCCAAGAACCAAGT 57.030 33.333 0.00 0.00 0.00 3.16
2473 5080 5.700832 TGGTCTTGCTACTACATTCTTGTTG 59.299 40.000 0.00 0.00 37.28 3.33
2503 5110 6.930731 TCCCATTGGCTTTTTATTCACTTAC 58.069 36.000 0.00 0.00 0.00 2.34
2539 5160 4.978186 ACGCTTGATCTTCATGTTGATTG 58.022 39.130 0.00 0.00 0.00 2.67
2592 5224 9.974980 TCTGAACTTTAACTTTGTTTTCTTGTT 57.025 25.926 0.00 0.00 0.00 2.83
2594 5226 8.983724 TGAACTTTAACTTTGTTTTCTTGTTGG 58.016 29.630 0.00 0.00 0.00 3.77
2665 5609 3.136443 TGTGAATCACCAGGTTTGACTCT 59.864 43.478 11.24 0.00 32.73 3.24
2834 5782 5.808366 ACTCTTGGTTGTGATAGTCTGAA 57.192 39.130 0.00 0.00 0.00 3.02
2974 6728 5.748630 GGTTTCAAACATTTCCAGAGAACAC 59.251 40.000 1.93 0.00 0.00 3.32
2985 6739 2.032924 CCAGAGAACACGAAACCCAAAC 59.967 50.000 0.00 0.00 0.00 2.93
3108 6871 3.005554 CACATCCCATCACTGAAGTCAC 58.994 50.000 0.00 0.00 0.00 3.67
3276 7039 9.411189 GTTCTCCTCTCTTTTCCTTAGTATAGA 57.589 37.037 0.00 0.00 0.00 1.98
3352 7119 3.327757 AGTTCTTGATAGGCAGGACACAA 59.672 43.478 0.00 0.00 31.65 3.33
3450 7242 2.428890 CCCAGGAGCTACAGAGTAAGTG 59.571 54.545 0.00 0.00 0.00 3.16
3455 7247 3.056465 GGAGCTACAGAGTAAGTGCTTGT 60.056 47.826 0.00 0.00 0.00 3.16
4011 7914 0.627451 AGATGGAAGAGGCATGGCAA 59.373 50.000 22.64 0.00 0.00 4.52
4155 8060 3.498777 GCTACCGCAAAGAGAAACTTCTT 59.501 43.478 0.00 0.00 39.03 2.52
4229 8136 8.391106 CCTTGAACTTATATTTCCTTCTGTTCG 58.609 37.037 0.00 0.00 36.38 3.95
4605 8587 0.610687 CTGTTCCTGGACCTGGAGTC 59.389 60.000 18.58 15.81 45.51 3.36
4765 8748 2.295349 CTGCTGGATGTTGCTGAGTTTT 59.705 45.455 0.00 0.00 0.00 2.43
4774 8759 4.980573 TGTTGCTGAGTTTTAGGTGGTAT 58.019 39.130 0.00 0.00 0.00 2.73
4884 8905 2.062519 GACAAGGAAGAACTCGTGCTC 58.937 52.381 0.00 0.00 0.00 4.26
4970 8994 8.398878 ACTTGTTAATTCCGTCCATCTTTAAA 57.601 30.769 0.00 0.00 0.00 1.52
5111 9193 5.905331 TCTTCCTTGCCTATCCTAATGAAGA 59.095 40.000 0.00 0.00 34.75 2.87
5350 9434 5.407407 AGAAGAGTCGCCTAAATTTGAGA 57.593 39.130 0.00 0.00 0.00 3.27
5431 9519 8.428063 CAGTCATCCTTCAATAATACTTCCTCT 58.572 37.037 0.00 0.00 0.00 3.69
5434 9522 9.434275 TCATCCTTCAATAATACTTCCTCTGTA 57.566 33.333 0.00 0.00 0.00 2.74
5518 9771 7.031226 ACTGCATCACCACATAATAATTGAC 57.969 36.000 0.00 0.00 0.00 3.18
5541 9794 2.036475 GTCTTGTCCTCTGCTTGAGACA 59.964 50.000 8.51 3.08 45.39 3.41
5593 9847 3.505680 AGTAGCGGAGATGATCTTGCTAG 59.494 47.826 22.52 5.34 39.63 3.42
5595 9849 1.342819 GCGGAGATGATCTTGCTAGGT 59.657 52.381 11.79 0.00 0.00 3.08
5613 9867 4.574599 AGGTCAGCACAGAAAAATGAAC 57.425 40.909 0.00 0.00 0.00 3.18
5670 9924 1.374758 CAGGACCTGACAAGCCGTC 60.375 63.158 17.22 0.00 45.61 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.871238 AAATTATCTGTACTAGTATAATGCCCG 57.129 33.333 5.75 0.00 0.00 6.13
10 11 8.822805 TGGAGACCAAAAATTATCTGTACTAGT 58.177 33.333 0.00 0.00 0.00 2.57
12 13 7.769044 GCTGGAGACCAAAAATTATCTGTACTA 59.231 37.037 0.00 0.00 30.80 1.82
13 14 6.599638 GCTGGAGACCAAAAATTATCTGTACT 59.400 38.462 0.00 0.00 30.80 2.73
15 16 6.374333 GTGCTGGAGACCAAAAATTATCTGTA 59.626 38.462 0.00 0.00 30.80 2.74
16 17 5.183904 GTGCTGGAGACCAAAAATTATCTGT 59.816 40.000 0.00 0.00 30.80 3.41
17 18 5.393461 GGTGCTGGAGACCAAAAATTATCTG 60.393 44.000 0.00 0.00 30.80 2.90
18 19 4.706962 GGTGCTGGAGACCAAAAATTATCT 59.293 41.667 0.00 0.00 30.80 1.98
19 20 4.706962 AGGTGCTGGAGACCAAAAATTATC 59.293 41.667 0.00 0.00 35.76 1.75
20 21 4.463891 CAGGTGCTGGAGACCAAAAATTAT 59.536 41.667 0.00 0.00 35.76 1.28
21 22 3.826157 CAGGTGCTGGAGACCAAAAATTA 59.174 43.478 0.00 0.00 35.76 1.40
22 23 2.629617 CAGGTGCTGGAGACCAAAAATT 59.370 45.455 0.00 0.00 35.76 1.82
23 24 2.242043 CAGGTGCTGGAGACCAAAAAT 58.758 47.619 0.00 0.00 35.76 1.82
24 25 1.064017 ACAGGTGCTGGAGACCAAAAA 60.064 47.619 0.00 0.00 35.51 1.94
25 26 0.550914 ACAGGTGCTGGAGACCAAAA 59.449 50.000 0.00 0.00 35.51 2.44
26 27 1.347707 CTACAGGTGCTGGAGACCAAA 59.652 52.381 0.00 0.00 44.74 3.28
27 28 0.976641 CTACAGGTGCTGGAGACCAA 59.023 55.000 0.00 0.00 44.74 3.67
28 29 0.904865 CCTACAGGTGCTGGAGACCA 60.905 60.000 0.00 0.00 44.74 4.02
29 30 0.905337 ACCTACAGGTGCTGGAGACC 60.905 60.000 0.00 0.00 44.74 3.85
30 31 1.477295 GTACCTACAGGTGCTGGAGAC 59.523 57.143 11.29 0.00 44.74 3.36
31 32 1.848652 GTACCTACAGGTGCTGGAGA 58.151 55.000 11.29 0.00 44.74 3.71
40 41 7.439381 ACATTTATATTGACCGTACCTACAGG 58.561 38.462 0.00 0.00 42.17 4.00
41 42 8.761497 CAACATTTATATTGACCGTACCTACAG 58.239 37.037 0.00 0.00 0.00 2.74
42 43 8.476447 TCAACATTTATATTGACCGTACCTACA 58.524 33.333 0.00 0.00 29.89 2.74
43 44 8.876275 TCAACATTTATATTGACCGTACCTAC 57.124 34.615 0.00 0.00 29.89 3.18
45 46 9.485206 GTATCAACATTTATATTGACCGTACCT 57.515 33.333 0.00 0.00 37.64 3.08
46 47 8.715088 GGTATCAACATTTATATTGACCGTACC 58.285 37.037 0.00 0.00 37.64 3.34
47 48 8.430063 CGGTATCAACATTTATATTGACCGTAC 58.570 37.037 0.00 0.00 39.51 3.67
48 49 7.116662 GCGGTATCAACATTTATATTGACCGTA 59.883 37.037 12.58 0.00 43.14 4.02
49 50 6.073440 GCGGTATCAACATTTATATTGACCGT 60.073 38.462 12.58 0.00 43.14 4.83
50 51 6.073494 TGCGGTATCAACATTTATATTGACCG 60.073 38.462 8.72 8.72 43.63 4.79
51 52 7.197071 TGCGGTATCAACATTTATATTGACC 57.803 36.000 0.00 0.00 37.64 4.02
52 53 9.329913 GATTGCGGTATCAACATTTATATTGAC 57.670 33.333 0.00 0.00 37.64 3.18
53 54 9.283768 AGATTGCGGTATCAACATTTATATTGA 57.716 29.630 0.00 0.00 39.09 2.57
54 55 9.897744 AAGATTGCGGTATCAACATTTATATTG 57.102 29.630 0.00 0.00 0.00 1.90
57 58 9.944663 GAAAAGATTGCGGTATCAACATTTATA 57.055 29.630 0.00 0.00 0.00 0.98
58 59 8.686334 AGAAAAGATTGCGGTATCAACATTTAT 58.314 29.630 0.00 0.00 0.00 1.40
59 60 7.967854 CAGAAAAGATTGCGGTATCAACATTTA 59.032 33.333 0.00 0.00 0.00 1.40
60 61 6.808212 CAGAAAAGATTGCGGTATCAACATTT 59.192 34.615 0.00 0.00 0.00 2.32
61 62 6.150976 TCAGAAAAGATTGCGGTATCAACATT 59.849 34.615 0.00 0.00 0.00 2.71
62 63 5.647658 TCAGAAAAGATTGCGGTATCAACAT 59.352 36.000 0.00 0.00 0.00 2.71
63 64 5.000591 TCAGAAAAGATTGCGGTATCAACA 58.999 37.500 0.00 0.00 0.00 3.33
64 65 5.545658 TCAGAAAAGATTGCGGTATCAAC 57.454 39.130 0.00 0.00 0.00 3.18
65 66 5.647658 ACATCAGAAAAGATTGCGGTATCAA 59.352 36.000 0.00 0.00 0.00 2.57
66 67 5.185454 ACATCAGAAAAGATTGCGGTATCA 58.815 37.500 0.00 0.00 0.00 2.15
67 68 5.741388 ACATCAGAAAAGATTGCGGTATC 57.259 39.130 0.00 0.00 0.00 2.24
68 69 5.647658 TGAACATCAGAAAAGATTGCGGTAT 59.352 36.000 0.00 0.00 0.00 2.73
69 70 5.000591 TGAACATCAGAAAAGATTGCGGTA 58.999 37.500 0.00 0.00 0.00 4.02
70 71 3.820467 TGAACATCAGAAAAGATTGCGGT 59.180 39.130 0.00 0.00 0.00 5.68
71 72 4.083110 AGTGAACATCAGAAAAGATTGCGG 60.083 41.667 0.00 0.00 0.00 5.69
72 73 5.039480 AGTGAACATCAGAAAAGATTGCG 57.961 39.130 0.00 0.00 0.00 4.85
73 74 6.017933 CGTAGTGAACATCAGAAAAGATTGC 58.982 40.000 0.00 0.00 0.00 3.56
74 75 7.121974 ACGTAGTGAACATCAGAAAAGATTG 57.878 36.000 0.00 0.00 42.51 2.67
93 94 3.337694 TGAAACCAATACCCCACGTAG 57.662 47.619 0.00 0.00 0.00 3.51
94 95 4.011023 CAATGAAACCAATACCCCACGTA 58.989 43.478 0.00 0.00 0.00 3.57
95 96 2.823154 CAATGAAACCAATACCCCACGT 59.177 45.455 0.00 0.00 0.00 4.49
96 97 2.416701 GCAATGAAACCAATACCCCACG 60.417 50.000 0.00 0.00 0.00 4.94
97 98 2.831526 AGCAATGAAACCAATACCCCAC 59.168 45.455 0.00 0.00 0.00 4.61
98 99 3.182887 AGCAATGAAACCAATACCCCA 57.817 42.857 0.00 0.00 0.00 4.96
99 100 3.636764 CCTAGCAATGAAACCAATACCCC 59.363 47.826 0.00 0.00 0.00 4.95
100 101 4.532834 TCCTAGCAATGAAACCAATACCC 58.467 43.478 0.00 0.00 0.00 3.69
101 102 6.321181 TGATTCCTAGCAATGAAACCAATACC 59.679 38.462 0.00 0.00 0.00 2.73
102 103 7.196331 GTGATTCCTAGCAATGAAACCAATAC 58.804 38.462 0.00 0.00 0.00 1.89
103 104 6.321181 GGTGATTCCTAGCAATGAAACCAATA 59.679 38.462 0.00 0.00 0.00 1.90
104 105 5.127682 GGTGATTCCTAGCAATGAAACCAAT 59.872 40.000 0.00 0.00 0.00 3.16
105 106 4.462483 GGTGATTCCTAGCAATGAAACCAA 59.538 41.667 0.00 0.00 0.00 3.67
106 107 4.016444 GGTGATTCCTAGCAATGAAACCA 58.984 43.478 0.00 0.00 0.00 3.67
107 108 3.065371 CGGTGATTCCTAGCAATGAAACC 59.935 47.826 0.00 0.00 0.00 3.27
108 109 3.689649 ACGGTGATTCCTAGCAATGAAAC 59.310 43.478 0.00 0.00 0.00 2.78
109 110 3.938963 GACGGTGATTCCTAGCAATGAAA 59.061 43.478 0.00 0.00 0.00 2.69
110 111 3.531538 GACGGTGATTCCTAGCAATGAA 58.468 45.455 0.00 0.00 0.00 2.57
111 112 2.481276 CGACGGTGATTCCTAGCAATGA 60.481 50.000 0.00 0.00 0.00 2.57
112 113 1.860950 CGACGGTGATTCCTAGCAATG 59.139 52.381 0.00 0.00 0.00 2.82
113 114 1.754803 TCGACGGTGATTCCTAGCAAT 59.245 47.619 0.00 0.00 0.00 3.56
114 115 1.179152 TCGACGGTGATTCCTAGCAA 58.821 50.000 0.00 0.00 0.00 3.91
115 116 1.399714 ATCGACGGTGATTCCTAGCA 58.600 50.000 0.00 0.00 0.00 3.49
116 117 2.128035 CAATCGACGGTGATTCCTAGC 58.872 52.381 0.00 0.00 36.46 3.42
117 118 2.128035 GCAATCGACGGTGATTCCTAG 58.872 52.381 0.00 0.00 36.46 3.02
118 119 1.478916 TGCAATCGACGGTGATTCCTA 59.521 47.619 0.00 0.00 36.46 2.94
119 120 0.249120 TGCAATCGACGGTGATTCCT 59.751 50.000 0.00 0.00 36.46 3.36
120 121 1.003545 CATGCAATCGACGGTGATTCC 60.004 52.381 0.00 0.00 36.46 3.01
121 122 1.595489 GCATGCAATCGACGGTGATTC 60.595 52.381 14.21 0.03 36.46 2.52
122 123 0.378257 GCATGCAATCGACGGTGATT 59.622 50.000 14.21 0.00 39.10 2.57
123 124 0.744057 TGCATGCAATCGACGGTGAT 60.744 50.000 20.30 0.00 0.00 3.06
124 125 0.952984 TTGCATGCAATCGACGGTGA 60.953 50.000 28.80 2.84 0.00 4.02
125 126 0.099259 ATTGCATGCAATCGACGGTG 59.901 50.000 34.78 0.00 42.32 4.94
126 127 0.099259 CATTGCATGCAATCGACGGT 59.901 50.000 36.90 17.68 43.92 4.83
127 128 0.377905 TCATTGCATGCAATCGACGG 59.622 50.000 36.90 26.43 43.92 4.79
128 129 1.841944 GTTCATTGCATGCAATCGACG 59.158 47.619 36.90 26.76 43.92 5.12
129 130 1.841944 CGTTCATTGCATGCAATCGAC 59.158 47.619 36.90 32.22 43.92 4.20
130 131 1.736681 TCGTTCATTGCATGCAATCGA 59.263 42.857 33.86 33.86 43.92 3.59
131 132 2.177001 TCGTTCATTGCATGCAATCG 57.823 45.000 36.90 33.82 43.92 3.34
132 133 4.817733 CAAATCGTTCATTGCATGCAATC 58.182 39.130 36.90 26.09 43.92 2.67
133 134 4.850859 CAAATCGTTCATTGCATGCAAT 57.149 36.364 34.78 34.78 46.35 3.56
167 168 5.048434 GCTAAAGCTTCAACAACTTCAGGAT 60.048 40.000 0.00 0.00 38.21 3.24
195 196 4.513519 CTTCCATAGCACGCCGAA 57.486 55.556 0.00 0.00 0.00 4.30
207 208 2.951642 CCTTCAGTTTGACAAGCTTCCA 59.048 45.455 1.23 0.00 0.00 3.53
213 214 3.209410 AGCAGACCTTCAGTTTGACAAG 58.791 45.455 0.00 0.00 32.25 3.16
214 215 3.281727 AGCAGACCTTCAGTTTGACAA 57.718 42.857 0.00 0.00 32.25 3.18
223 224 1.847328 TGACGGATAGCAGACCTTCA 58.153 50.000 0.00 0.00 33.24 3.02
224 225 2.961526 TTGACGGATAGCAGACCTTC 57.038 50.000 0.00 0.00 0.00 3.46
225 226 4.262635 CCATATTGACGGATAGCAGACCTT 60.263 45.833 0.00 0.00 0.00 3.50
226 227 3.259374 CCATATTGACGGATAGCAGACCT 59.741 47.826 0.00 0.00 0.00 3.85
227 228 3.589988 CCATATTGACGGATAGCAGACC 58.410 50.000 0.00 0.00 0.00 3.85
228 229 2.996621 GCCATATTGACGGATAGCAGAC 59.003 50.000 0.00 0.00 0.00 3.51
229 230 2.632512 TGCCATATTGACGGATAGCAGA 59.367 45.455 0.00 0.00 0.00 4.26
230 231 3.044235 TGCCATATTGACGGATAGCAG 57.956 47.619 0.00 0.00 0.00 4.24
231 232 3.701205 ATGCCATATTGACGGATAGCA 57.299 42.857 0.00 0.00 0.00 3.49
232 233 4.455533 TCAAATGCCATATTGACGGATAGC 59.544 41.667 0.00 0.00 30.94 2.97
233 234 6.748333 ATCAAATGCCATATTGACGGATAG 57.252 37.500 5.00 0.00 38.29 2.08
234 235 6.570186 GCAATCAAATGCCATATTGACGGATA 60.570 38.462 3.41 0.00 40.49 2.59
235 236 5.775686 CAATCAAATGCCATATTGACGGAT 58.224 37.500 5.00 0.00 38.29 4.18
236 237 4.499526 GCAATCAAATGCCATATTGACGGA 60.500 41.667 3.41 0.00 40.49 4.69
237 238 3.737266 GCAATCAAATGCCATATTGACGG 59.263 43.478 3.41 2.31 40.49 4.79
268 269 9.802039 TGGGTATTATATTTTATTCTGGACACC 57.198 33.333 0.00 0.00 0.00 4.16
292 293 5.221541 GGACCCTAATCTTGAGTGATACTGG 60.222 48.000 0.00 0.00 0.00 4.00
297 298 3.133003 CACGGACCCTAATCTTGAGTGAT 59.867 47.826 0.00 0.00 0.00 3.06
314 315 7.726216 AGATACTTGACATCATAAATCACGGA 58.274 34.615 0.00 0.00 0.00 4.69
324 325 3.316588 AGACGCGAGATACTTGACATCAT 59.683 43.478 15.93 0.00 0.00 2.45
363 364 2.489329 CCATGCTTGACACGAAGGAAAT 59.511 45.455 0.22 0.00 0.00 2.17
367 368 1.238439 AACCATGCTTGACACGAAGG 58.762 50.000 0.22 0.00 0.00 3.46
418 419 3.321396 GGAGTATTTAGGAACGGAGGGAG 59.679 52.174 0.00 0.00 0.00 4.30
419 420 3.303049 GGAGTATTTAGGAACGGAGGGA 58.697 50.000 0.00 0.00 0.00 4.20
420 421 2.367894 GGGAGTATTTAGGAACGGAGGG 59.632 54.545 0.00 0.00 0.00 4.30
421 422 3.306613 AGGGAGTATTTAGGAACGGAGG 58.693 50.000 0.00 0.00 0.00 4.30
422 423 3.321396 GGAGGGAGTATTTAGGAACGGAG 59.679 52.174 0.00 0.00 0.00 4.63
423 424 3.303049 GGAGGGAGTATTTAGGAACGGA 58.697 50.000 0.00 0.00 0.00 4.69
424 425 2.035576 CGGAGGGAGTATTTAGGAACGG 59.964 54.545 0.00 0.00 0.00 4.44
425 426 2.692041 ACGGAGGGAGTATTTAGGAACG 59.308 50.000 0.00 0.00 0.00 3.95
426 427 4.750021 AACGGAGGGAGTATTTAGGAAC 57.250 45.455 0.00 0.00 0.00 3.62
427 428 5.769835 TCTAACGGAGGGAGTATTTAGGAA 58.230 41.667 0.00 0.00 0.00 3.36
428 429 5.393068 TCTAACGGAGGGAGTATTTAGGA 57.607 43.478 0.00 0.00 0.00 2.94
429 430 6.475596 TTTCTAACGGAGGGAGTATTTAGG 57.524 41.667 0.00 0.00 0.00 2.69
430 431 9.473640 GTAATTTCTAACGGAGGGAGTATTTAG 57.526 37.037 0.00 0.00 0.00 1.85
431 432 9.205513 AGTAATTTCTAACGGAGGGAGTATTTA 57.794 33.333 0.00 0.00 0.00 1.40
432 433 8.087303 AGTAATTTCTAACGGAGGGAGTATTT 57.913 34.615 0.00 0.00 0.00 1.40
433 434 7.672122 AGTAATTTCTAACGGAGGGAGTATT 57.328 36.000 0.00 0.00 0.00 1.89
434 435 7.125356 ACAAGTAATTTCTAACGGAGGGAGTAT 59.875 37.037 0.00 0.00 0.00 2.12
435 436 6.438425 ACAAGTAATTTCTAACGGAGGGAGTA 59.562 38.462 0.00 0.00 0.00 2.59
436 437 5.247792 ACAAGTAATTTCTAACGGAGGGAGT 59.752 40.000 0.00 0.00 0.00 3.85
437 438 5.731591 ACAAGTAATTTCTAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
438 439 5.246656 TGACAAGTAATTTCTAACGGAGGGA 59.753 40.000 0.00 0.00 0.00 4.20
439 440 5.350640 GTGACAAGTAATTTCTAACGGAGGG 59.649 44.000 0.00 0.00 0.00 4.30
440 441 5.929992 TGTGACAAGTAATTTCTAACGGAGG 59.070 40.000 0.00 0.00 0.00 4.30
441 442 7.416154 TTGTGACAAGTAATTTCTAACGGAG 57.584 36.000 0.00 0.00 0.00 4.63
442 443 7.789273 TTTGTGACAAGTAATTTCTAACGGA 57.211 32.000 0.00 0.00 0.00 4.69
443 444 8.844441 TTTTTGTGACAAGTAATTTCTAACGG 57.156 30.769 0.00 0.00 0.00 4.44
449 450 9.584839 GCATTCATTTTTGTGACAAGTAATTTC 57.415 29.630 0.00 0.00 0.00 2.17
450 451 9.107177 TGCATTCATTTTTGTGACAAGTAATTT 57.893 25.926 0.00 0.00 0.00 1.82
451 452 8.659925 TGCATTCATTTTTGTGACAAGTAATT 57.340 26.923 0.00 0.00 0.00 1.40
452 453 8.836268 ATGCATTCATTTTTGTGACAAGTAAT 57.164 26.923 0.00 0.32 0.00 1.89
453 454 8.143193 AGATGCATTCATTTTTGTGACAAGTAA 58.857 29.630 0.00 0.00 31.96 2.24
454 455 7.660112 AGATGCATTCATTTTTGTGACAAGTA 58.340 30.769 0.00 0.00 31.96 2.24
455 456 6.518493 AGATGCATTCATTTTTGTGACAAGT 58.482 32.000 0.00 0.00 31.96 3.16
456 457 7.595875 TGTAGATGCATTCATTTTTGTGACAAG 59.404 33.333 0.00 0.00 31.96 3.16
457 458 7.432059 TGTAGATGCATTCATTTTTGTGACAA 58.568 30.769 0.00 0.00 31.96 3.18
458 459 6.979465 TGTAGATGCATTCATTTTTGTGACA 58.021 32.000 0.00 0.00 31.96 3.58
459 460 7.596248 AGTTGTAGATGCATTCATTTTTGTGAC 59.404 33.333 0.00 0.00 31.96 3.67
460 461 7.660112 AGTTGTAGATGCATTCATTTTTGTGA 58.340 30.769 0.00 0.00 31.96 3.58
461 462 7.878477 AGTTGTAGATGCATTCATTTTTGTG 57.122 32.000 0.00 0.00 31.96 3.33
462 463 9.979578 TTTAGTTGTAGATGCATTCATTTTTGT 57.020 25.926 0.00 0.00 31.96 2.83
508 509 6.360844 TGTTCGAAATTACTCGTCCAAAAA 57.639 33.333 0.00 0.00 39.84 1.94
509 510 5.987777 TGTTCGAAATTACTCGTCCAAAA 57.012 34.783 0.00 0.00 39.84 2.44
510 511 5.987777 TTGTTCGAAATTACTCGTCCAAA 57.012 34.783 0.00 0.00 39.84 3.28
511 512 5.049954 CCTTTGTTCGAAATTACTCGTCCAA 60.050 40.000 0.00 0.00 39.84 3.53
512 513 4.449743 CCTTTGTTCGAAATTACTCGTCCA 59.550 41.667 0.00 0.00 39.84 4.02
513 514 4.142966 CCCTTTGTTCGAAATTACTCGTCC 60.143 45.833 0.00 0.00 39.84 4.79
514 515 4.687483 TCCCTTTGTTCGAAATTACTCGTC 59.313 41.667 0.00 0.00 39.84 4.20
515 516 4.634199 TCCCTTTGTTCGAAATTACTCGT 58.366 39.130 0.00 0.00 39.84 4.18
516 517 4.689345 ACTCCCTTTGTTCGAAATTACTCG 59.311 41.667 0.00 0.00 40.25 4.18
517 518 7.845066 ATACTCCCTTTGTTCGAAATTACTC 57.155 36.000 0.00 0.00 0.00 2.59
518 519 9.379791 CTTATACTCCCTTTGTTCGAAATTACT 57.620 33.333 0.00 0.00 0.00 2.24
519 520 9.159364 ACTTATACTCCCTTTGTTCGAAATTAC 57.841 33.333 0.00 0.00 0.00 1.89
520 521 9.374838 GACTTATACTCCCTTTGTTCGAAATTA 57.625 33.333 0.00 0.00 0.00 1.40
521 522 8.101419 AGACTTATACTCCCTTTGTTCGAAATT 58.899 33.333 0.00 0.00 0.00 1.82
522 523 7.621796 AGACTTATACTCCCTTTGTTCGAAAT 58.378 34.615 0.00 0.00 0.00 2.17
523 524 7.001099 AGACTTATACTCCCTTTGTTCGAAA 57.999 36.000 0.00 0.00 0.00 3.46
524 525 6.600882 AGACTTATACTCCCTTTGTTCGAA 57.399 37.500 0.00 0.00 0.00 3.71
525 526 6.600882 AAGACTTATACTCCCTTTGTTCGA 57.399 37.500 0.00 0.00 0.00 3.71
526 527 7.061752 CAAAGACTTATACTCCCTTTGTTCG 57.938 40.000 0.00 0.00 38.99 3.95
530 531 9.720769 TCTTTACAAAGACTTATACTCCCTTTG 57.279 33.333 0.00 0.00 45.30 2.77
542 543 9.832445 TCTACAGTGAAATCTTTACAAAGACTT 57.168 29.630 6.56 2.45 46.80 3.01
543 544 9.262358 GTCTACAGTGAAATCTTTACAAAGACT 57.738 33.333 6.56 0.00 46.80 3.24
544 545 8.496751 GGTCTACAGTGAAATCTTTACAAAGAC 58.503 37.037 6.56 0.00 46.80 3.01
546 547 8.283291 GTGGTCTACAGTGAAATCTTTACAAAG 58.717 37.037 0.00 0.00 37.36 2.77
547 548 7.771361 TGTGGTCTACAGTGAAATCTTTACAAA 59.229 33.333 0.00 0.00 33.42 2.83
548 549 7.276658 TGTGGTCTACAGTGAAATCTTTACAA 58.723 34.615 0.00 0.00 33.42 2.41
549 550 6.822442 TGTGGTCTACAGTGAAATCTTTACA 58.178 36.000 0.00 0.00 33.42 2.41
550 551 7.907214 ATGTGGTCTACAGTGAAATCTTTAC 57.093 36.000 0.00 0.00 43.80 2.01
551 552 7.758076 CGTATGTGGTCTACAGTGAAATCTTTA 59.242 37.037 0.00 0.00 43.80 1.85
552 553 6.590292 CGTATGTGGTCTACAGTGAAATCTTT 59.410 38.462 0.00 0.00 43.80 2.52
553 554 6.100004 CGTATGTGGTCTACAGTGAAATCTT 58.900 40.000 0.00 0.00 43.80 2.40
554 555 5.394224 CCGTATGTGGTCTACAGTGAAATCT 60.394 44.000 0.00 0.00 43.80 2.40
555 556 4.804139 CCGTATGTGGTCTACAGTGAAATC 59.196 45.833 0.00 0.00 43.80 2.17
556 557 4.464951 TCCGTATGTGGTCTACAGTGAAAT 59.535 41.667 0.00 0.00 43.80 2.17
557 558 3.827876 TCCGTATGTGGTCTACAGTGAAA 59.172 43.478 0.00 0.00 43.80 2.69
558 559 3.423749 TCCGTATGTGGTCTACAGTGAA 58.576 45.455 0.00 0.00 43.80 3.18
559 560 3.076079 TCCGTATGTGGTCTACAGTGA 57.924 47.619 0.00 0.00 43.80 3.41
560 561 3.130516 ACATCCGTATGTGGTCTACAGTG 59.869 47.826 0.00 0.00 44.79 3.66
561 562 3.362706 ACATCCGTATGTGGTCTACAGT 58.637 45.455 0.00 0.00 44.79 3.55
562 563 5.473846 AGATACATCCGTATGTGGTCTACAG 59.526 44.000 3.56 0.00 45.99 2.74
563 564 5.382616 AGATACATCCGTATGTGGTCTACA 58.617 41.667 3.56 0.00 45.99 2.74
564 565 5.961396 AGATACATCCGTATGTGGTCTAC 57.039 43.478 3.56 0.00 45.99 2.59
565 566 7.012661 TCTAGATACATCCGTATGTGGTCTA 57.987 40.000 3.56 9.99 45.99 2.59
566 567 5.877491 TCTAGATACATCCGTATGTGGTCT 58.123 41.667 3.56 9.42 45.99 3.85
567 568 6.556212 CATCTAGATACATCCGTATGTGGTC 58.444 44.000 4.54 2.46 45.99 4.02
568 569 5.105716 GCATCTAGATACATCCGTATGTGGT 60.106 44.000 4.54 0.00 45.99 4.16
569 570 5.105756 TGCATCTAGATACATCCGTATGTGG 60.106 44.000 4.54 0.00 45.99 4.17
570 571 5.954335 TGCATCTAGATACATCCGTATGTG 58.046 41.667 4.54 0.00 45.99 3.21
572 573 8.484641 AAAATGCATCTAGATACATCCGTATG 57.515 34.615 17.09 0.00 38.48 2.39
573 574 9.809096 CTAAAATGCATCTAGATACATCCGTAT 57.191 33.333 17.09 0.85 41.16 3.06
574 575 9.020731 TCTAAAATGCATCTAGATACATCCGTA 57.979 33.333 17.09 9.71 0.00 4.02
575 576 7.896811 TCTAAAATGCATCTAGATACATCCGT 58.103 34.615 17.09 9.18 0.00 4.69
576 577 8.031864 ACTCTAAAATGCATCTAGATACATCCG 58.968 37.037 17.09 7.74 0.00 4.18
587 588 9.624373 AGTGAATCAATACTCTAAAATGCATCT 57.376 29.630 0.00 0.00 0.00 2.90
588 589 9.875675 GAGTGAATCAATACTCTAAAATGCATC 57.124 33.333 0.00 0.00 40.06 3.91
589 590 9.399797 TGAGTGAATCAATACTCTAAAATGCAT 57.600 29.630 0.00 0.00 42.86 3.96
590 591 8.791327 TGAGTGAATCAATACTCTAAAATGCA 57.209 30.769 0.00 0.00 42.86 3.96
596 597 9.453572 AGCAAAATGAGTGAATCAATACTCTAA 57.546 29.630 0.00 0.00 42.53 2.10
597 598 9.102757 GAGCAAAATGAGTGAATCAATACTCTA 57.897 33.333 0.00 0.00 42.53 2.43
598 599 7.066766 GGAGCAAAATGAGTGAATCAATACTCT 59.933 37.037 0.00 0.00 42.53 3.24
599 600 7.192232 GGAGCAAAATGAGTGAATCAATACTC 58.808 38.462 0.00 0.00 42.53 2.59
600 601 6.183360 CGGAGCAAAATGAGTGAATCAATACT 60.183 38.462 0.00 0.00 42.53 2.12
601 602 5.967674 CGGAGCAAAATGAGTGAATCAATAC 59.032 40.000 0.00 0.00 42.53 1.89
602 603 5.647658 ACGGAGCAAAATGAGTGAATCAATA 59.352 36.000 0.00 0.00 42.53 1.90
603 604 4.460382 ACGGAGCAAAATGAGTGAATCAAT 59.540 37.500 0.00 0.00 42.53 2.57
604 605 3.820467 ACGGAGCAAAATGAGTGAATCAA 59.180 39.130 0.00 0.00 42.53 2.57
605 606 3.411446 ACGGAGCAAAATGAGTGAATCA 58.589 40.909 0.00 0.00 43.70 2.57
606 607 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
607 608 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
608 609 4.154015 CACATACGGAGCAAAATGAGTGAA 59.846 41.667 0.00 0.00 0.00 3.18
609 610 3.684305 CACATACGGAGCAAAATGAGTGA 59.316 43.478 0.00 0.00 0.00 3.41
610 611 3.181507 CCACATACGGAGCAAAATGAGTG 60.182 47.826 0.00 0.00 0.00 3.51
611 612 3.009723 CCACATACGGAGCAAAATGAGT 58.990 45.455 0.00 0.00 0.00 3.41
612 613 3.009723 ACCACATACGGAGCAAAATGAG 58.990 45.455 0.00 0.00 0.00 2.90
613 614 3.006940 GACCACATACGGAGCAAAATGA 58.993 45.455 0.00 0.00 0.00 2.57
614 615 2.097466 GGACCACATACGGAGCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
615 616 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
616 617 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
617 618 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
618 619 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
619 620 1.686587 CTATGGACCACATACGGAGCA 59.313 52.381 0.00 0.00 41.03 4.26
620 621 1.687123 ACTATGGACCACATACGGAGC 59.313 52.381 0.00 0.00 41.03 4.70
621 622 2.035961 CCACTATGGACCACATACGGAG 59.964 54.545 0.00 0.00 40.96 4.63
622 623 2.036387 CCACTATGGACCACATACGGA 58.964 52.381 0.00 0.00 40.96 4.69
623 624 2.036387 TCCACTATGGACCACATACGG 58.964 52.381 0.00 0.00 42.67 4.02
660 661 9.771534 GCAACTACTCTCTCCATTTCTAAATAT 57.228 33.333 0.00 0.00 0.00 1.28
661 662 7.921214 CGCAACTACTCTCTCCATTTCTAAATA 59.079 37.037 0.00 0.00 0.00 1.40
662 663 6.758886 CGCAACTACTCTCTCCATTTCTAAAT 59.241 38.462 0.00 0.00 0.00 1.40
663 664 6.071560 TCGCAACTACTCTCTCCATTTCTAAA 60.072 38.462 0.00 0.00 0.00 1.85
664 665 5.417894 TCGCAACTACTCTCTCCATTTCTAA 59.582 40.000 0.00 0.00 0.00 2.10
665 666 4.948004 TCGCAACTACTCTCTCCATTTCTA 59.052 41.667 0.00 0.00 0.00 2.10
666 667 3.764434 TCGCAACTACTCTCTCCATTTCT 59.236 43.478 0.00 0.00 0.00 2.52
667 668 4.109050 CTCGCAACTACTCTCTCCATTTC 58.891 47.826 0.00 0.00 0.00 2.17
668 669 3.677424 GCTCGCAACTACTCTCTCCATTT 60.677 47.826 0.00 0.00 0.00 2.32
669 670 2.159170 GCTCGCAACTACTCTCTCCATT 60.159 50.000 0.00 0.00 0.00 3.16
670 671 1.407258 GCTCGCAACTACTCTCTCCAT 59.593 52.381 0.00 0.00 0.00 3.41
671 672 0.811915 GCTCGCAACTACTCTCTCCA 59.188 55.000 0.00 0.00 0.00 3.86
672 673 0.811915 TGCTCGCAACTACTCTCTCC 59.188 55.000 0.00 0.00 0.00 3.71
673 674 2.159310 ACATGCTCGCAACTACTCTCTC 60.159 50.000 0.00 0.00 0.00 3.20
674 675 1.821753 ACATGCTCGCAACTACTCTCT 59.178 47.619 0.00 0.00 0.00 3.10
675 676 2.285827 ACATGCTCGCAACTACTCTC 57.714 50.000 0.00 0.00 0.00 3.20
676 677 2.289072 ACAACATGCTCGCAACTACTCT 60.289 45.455 0.00 0.00 0.00 3.24
677 678 2.069273 ACAACATGCTCGCAACTACTC 58.931 47.619 0.00 0.00 0.00 2.59
678 679 2.169832 ACAACATGCTCGCAACTACT 57.830 45.000 0.00 0.00 0.00 2.57
679 680 4.398549 TTTACAACATGCTCGCAACTAC 57.601 40.909 0.00 0.00 0.00 2.73
680 681 5.621197 AATTTACAACATGCTCGCAACTA 57.379 34.783 0.00 0.00 0.00 2.24
681 682 4.503741 AATTTACAACATGCTCGCAACT 57.496 36.364 0.00 0.00 0.00 3.16
682 683 6.869421 AATAATTTACAACATGCTCGCAAC 57.131 33.333 0.00 0.00 0.00 4.17
683 684 7.881643 AAAATAATTTACAACATGCTCGCAA 57.118 28.000 0.00 0.00 0.00 4.85
689 690 8.376942 CCACGGTAAAAATAATTTACAACATGC 58.623 33.333 11.79 0.00 36.79 4.06
712 713 1.821216 ACATTCCGGAATCACACCAC 58.179 50.000 26.95 0.00 0.00 4.16
817 818 2.935201 TGTCATGTTTTGGCTTGTTTGC 59.065 40.909 0.00 0.00 0.00 3.68
827 828 4.681025 GCTTACCACATGTGTCATGTTTTG 59.319 41.667 23.79 8.10 0.00 2.44
834 835 3.081061 GGATTGCTTACCACATGTGTCA 58.919 45.455 23.79 8.71 0.00 3.58
836 837 3.153369 TGGATTGCTTACCACATGTGT 57.847 42.857 23.79 14.29 0.00 3.72
837 838 4.022068 AGTTTGGATTGCTTACCACATGTG 60.022 41.667 19.31 19.31 35.81 3.21
838 839 4.151883 AGTTTGGATTGCTTACCACATGT 58.848 39.130 0.00 0.00 35.81 3.21
839 840 4.789012 AGTTTGGATTGCTTACCACATG 57.211 40.909 0.00 0.00 35.81 3.21
841 842 6.909550 AAATAGTTTGGATTGCTTACCACA 57.090 33.333 0.00 0.00 35.81 4.17
842 843 8.682710 TCATAAATAGTTTGGATTGCTTACCAC 58.317 33.333 0.00 0.00 35.81 4.16
843 844 8.815565 TCATAAATAGTTTGGATTGCTTACCA 57.184 30.769 0.00 0.00 0.00 3.25
871 872 3.620472 GCTTGTGGGGATGATGCATTTTT 60.620 43.478 0.00 0.00 0.00 1.94
872 873 2.093341 GCTTGTGGGGATGATGCATTTT 60.093 45.455 0.00 0.00 0.00 1.82
873 874 1.483415 GCTTGTGGGGATGATGCATTT 59.517 47.619 0.00 0.00 0.00 2.32
874 875 1.117150 GCTTGTGGGGATGATGCATT 58.883 50.000 0.00 0.00 0.00 3.56
875 876 0.757935 GGCTTGTGGGGATGATGCAT 60.758 55.000 0.00 0.00 0.00 3.96
876 877 1.380246 GGCTTGTGGGGATGATGCA 60.380 57.895 0.00 0.00 0.00 3.96
877 878 0.685458 AAGGCTTGTGGGGATGATGC 60.685 55.000 0.00 0.00 0.00 3.91
878 879 1.108776 CAAGGCTTGTGGGGATGATG 58.891 55.000 19.07 0.00 0.00 3.07
879 880 0.685458 GCAAGGCTTGTGGGGATGAT 60.685 55.000 26.71 0.00 0.00 2.45
880 881 1.304381 GCAAGGCTTGTGGGGATGA 60.304 57.895 26.71 0.00 0.00 2.92
881 882 2.353610 GGCAAGGCTTGTGGGGATG 61.354 63.158 26.71 1.46 0.00 3.51
882 883 2.037847 GGCAAGGCTTGTGGGGAT 59.962 61.111 26.71 0.00 0.00 3.85
883 884 4.299796 GGGCAAGGCTTGTGGGGA 62.300 66.667 26.71 0.00 0.00 4.81
885 886 4.619320 TGGGGCAAGGCTTGTGGG 62.619 66.667 26.71 3.46 0.00 4.61
886 887 2.139484 TTTGGGGCAAGGCTTGTGG 61.139 57.895 26.71 3.85 0.00 4.17
887 888 1.069596 GTTTGGGGCAAGGCTTGTG 59.930 57.895 26.71 5.41 0.00 3.33
888 889 1.382420 TGTTTGGGGCAAGGCTTGT 60.382 52.632 26.71 0.00 0.00 3.16
889 890 1.069596 GTGTTTGGGGCAAGGCTTG 59.930 57.895 22.75 22.75 0.00 4.01
1200 1261 2.519541 CGGCGAGGAGGAGGATGA 60.520 66.667 0.00 0.00 0.00 2.92
1201 1262 4.292178 GCGGCGAGGAGGAGGATG 62.292 72.222 12.98 0.00 0.00 3.51
1446 1531 1.377725 CCTTGATGGCCGTCTGCTT 60.378 57.895 25.20 0.00 40.92 3.91
2005 3685 6.208797 GGCAAACTAAATACTCAAGGTTCCTT 59.791 38.462 0.00 0.00 0.00 3.36
2016 3696 5.411669 GTGTACTGCTGGCAAACTAAATACT 59.588 40.000 0.00 0.00 0.00 2.12
2059 3959 1.272985 ACTGAGAGAAGACCCAGGAGG 60.273 57.143 0.00 0.00 43.78 4.30
2063 3963 1.824230 CCAGACTGAGAGAAGACCCAG 59.176 57.143 3.32 0.00 0.00 4.45
2113 4492 6.646240 CCCCATTTTACAGACAACAATTTCAG 59.354 38.462 0.00 0.00 0.00 3.02
2143 4656 1.561643 ATCAGGACACGACCTCATGT 58.438 50.000 0.00 0.00 38.32 3.21
2426 4988 3.303461 CGAAATGTGCGTGTCCAAAACTA 60.303 43.478 0.00 0.00 0.00 2.24
2473 5080 7.279981 GTGAATAAAAAGCCAATGGGATTAACC 59.720 37.037 0.00 0.00 43.39 2.85
2503 5110 5.973565 AGATCAAGCGTTTCAAAACAAGAAG 59.026 36.000 6.45 0.00 38.81 2.85
2539 5160 2.228582 TGACAGCCATACAATTGCACAC 59.771 45.455 5.05 0.00 0.00 3.82
2665 5609 9.838339 TTTTGAAAAATTACAGAAGGCCAAATA 57.162 25.926 5.01 0.00 0.00 1.40
2802 5749 5.945155 TCACAACCAAGAGTTAACAACAAC 58.055 37.500 8.61 0.00 36.18 3.32
2834 5782 6.317893 ACAGTACAGAAACGATTCAGGTTTTT 59.682 34.615 8.22 0.00 37.70 1.94
2849 6088 6.358178 TGATAAACCCAACAACAGTACAGAA 58.642 36.000 0.00 0.00 0.00 3.02
2985 6739 6.977502 GGGGAAATTTTGTTTTTGTTCCAATG 59.022 34.615 0.00 0.00 36.96 2.82
3009 6765 7.378995 TGGAAAAACGTATTTTAAATGTGACGG 59.621 33.333 13.60 0.44 37.01 4.79
3298 7061 9.838975 CTGTTGTACATTTGCATAATAAACAGA 57.161 29.630 14.82 5.28 41.94 3.41
3299 7062 9.075519 CCTGTTGTACATTTGCATAATAAACAG 57.924 33.333 0.00 13.75 40.10 3.16
3300 7063 8.797438 TCCTGTTGTACATTTGCATAATAAACA 58.203 29.630 0.00 0.00 0.00 2.83
3301 7064 9.289303 CTCCTGTTGTACATTTGCATAATAAAC 57.711 33.333 0.00 0.00 0.00 2.01
3304 7067 6.601217 TGCTCCTGTTGTACATTTGCATAATA 59.399 34.615 0.00 0.00 0.00 0.98
3305 7068 5.418524 TGCTCCTGTTGTACATTTGCATAAT 59.581 36.000 0.00 0.00 0.00 1.28
3352 7119 2.632996 TCAAGGAGACGGTGTTCTCATT 59.367 45.455 3.51 0.00 45.23 2.57
3702 7556 5.127491 TCCCCGTTATATTGCCTTTGTTAG 58.873 41.667 0.00 0.00 0.00 2.34
3709 7564 5.697067 TGTTATTTCCCCGTTATATTGCCT 58.303 37.500 0.00 0.00 0.00 4.75
3750 7605 3.691118 ACCAGCATATTGTTGCAGTACTG 59.309 43.478 18.93 18.93 45.23 2.74
4011 7914 2.616510 GCTATGCTGTTCCACTTCCACT 60.617 50.000 0.00 0.00 0.00 4.00
4155 8060 6.148315 TCGTATCGTAACTTCTGAAGAACTCA 59.852 38.462 23.36 10.25 0.00 3.41
4229 8136 9.630098 AAATGTGTCAGAAACATGAATTATGAC 57.370 29.630 23.98 23.98 44.92 3.06
4605 8587 1.073199 GGTCACACTCACAAGGGGG 59.927 63.158 0.00 0.00 0.00 5.40
4765 8748 6.381994 CCCAGTTTGTCTAACTATACCACCTA 59.618 42.308 0.00 0.00 45.29 3.08
4774 8759 4.161876 TGGCTACCCAGTTTGTCTAACTA 58.838 43.478 0.00 0.00 45.29 2.24
4843 8864 3.265221 TCAATCTTCAGACAAGGGAGCAT 59.735 43.478 0.00 0.00 0.00 3.79
4884 8905 3.054878 GCCAACAATTCAGACAAAGCAG 58.945 45.455 0.00 0.00 0.00 4.24
5111 9193 4.449068 GCTGCACAAGTATATGCGTATCTT 59.551 41.667 0.55 3.64 45.13 2.40
5350 9434 0.971386 CAGGGGCAATTGTTCAGCTT 59.029 50.000 7.40 0.00 0.00 3.74
5391 9478 3.055385 GGATGACTGGGCACTTGTTACTA 60.055 47.826 0.00 0.00 0.00 1.82
5403 9491 6.712547 GGAAGTATTATTGAAGGATGACTGGG 59.287 42.308 0.00 0.00 0.00 4.45
5404 9492 7.512992 AGGAAGTATTATTGAAGGATGACTGG 58.487 38.462 0.00 0.00 0.00 4.00
5461 9714 6.460123 GCAAGTTGAAAGTTCCTTCTCATCAA 60.460 38.462 7.16 0.00 0.00 2.57
5518 9771 0.318441 TCAAGCAGAGGACAAGACCG 59.682 55.000 0.00 0.00 34.73 4.79
5565 9819 0.824109 TCATCTCCGCTACTGTTGGG 59.176 55.000 0.00 0.00 0.00 4.12
5593 9847 4.305989 TGTTCATTTTTCTGTGCTGACC 57.694 40.909 0.00 0.00 0.00 4.02
5595 9849 4.796946 GCCATGTTCATTTTTCTGTGCTGA 60.797 41.667 0.00 0.00 0.00 4.26
5613 9867 1.820519 ACATTGTAACTGCCAGCCATG 59.179 47.619 0.00 0.00 0.00 3.66
5670 9924 2.032620 ACCTGTACTGATAAGCCGAGG 58.967 52.381 0.60 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.