AutoCloner

Multiple sequence alignment - TraesCS3B01G509500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G509500	chr3B	100.000	3008	0	0	1	3008	753671746	753674753	0.000000e+00	5555.0
1	TraesCS3B01G509500	chr3B	85.944	249	35	0	987	1235	752973262	752973014	1.780000e-67	267.0
2	TraesCS3B01G509500	chr3B	95.413	109	5	0	1	109	305547376	305547268	1.110000e-39	174.0
3	TraesCS3B01G509500	chr3B	75.157	318	47	15	2555	2864	752039397	752039104	1.460000e-23	121.0
4	TraesCS3B01G509500	chr3B	75.079	317	50	12	2555	2864	752048489	752048195	1.460000e-23	121.0
5	TraesCS3B01G509500	chr3B	94.595	37	2	0	1758	1794	752376488	752376452	1.160000e-04	58.4
6	TraesCS3B01G509500	chr3D	95.171	2071	66	13	815	2870	565604013	565606064	0.000000e+00	3240.0
7	TraesCS3B01G509500	chr3D	78.250	1200	209	26	988	2174	565535511	565536671	0.000000e+00	723.0
8	TraesCS3B01G509500	chr3D	75.128	1560	281	71	994	2523	564308529	564307047	1.520000e-177	632.0
9	TraesCS3B01G509500	chr3D	74.015	1574	288	67	992	2519	565258642	565260140	2.050000e-146	529.0
10	TraesCS3B01G509500	chr3D	75.591	889	162	37	1672	2523	565326268	565327138	3.640000e-104	388.0
11	TraesCS3B01G509500	chr3D	90.254	236	14	2	74	301	565602316	565602550	1.750000e-77	300.0
12	TraesCS3B01G509500	chr3D	76.970	495	96	12	1686	2177	564392500	564392021	1.780000e-67	267.0
13	TraesCS3B01G509500	chr3D	80.466	343	61	5	1827	2167	564486537	564486199	1.070000e-64	257.0
14	TraesCS3B01G509500	chr3D	79.501	361	66	5	992	1351	565162776	565163129	1.790000e-62	250.0
15	TraesCS3B01G509500	chr3D	79.567	323	60	4	985	1306	565082543	565082860	3.020000e-55	226.0
16	TraesCS3B01G509500	chr3D	82.051	195	32	3	995	1186	569842827	569842633	2.400000e-36	163.0
17	TraesCS3B01G509500	chr3D	92.661	109	5	3	1	109	254120758	254120653	1.440000e-33	154.0
18	TraesCS3B01G509500	chr3D	95.604	91	4	0	1	91	565602213	565602303	2.420000e-31	147.0
19	TraesCS3B01G509500	chr3D	88.596	114	11	2	2392	2504	564485935	564485823	1.450000e-28	137.0
20	TraesCS3B01G509500	chr3D	76.025	317	43	15	2555	2860	564306813	564306519	1.880000e-27	134.0
21	TraesCS3B01G509500	chr3D	97.297	37	1	0	1758	1794	564904697	564904661	2.500000e-06	63.9
22	TraesCS3B01G509500	chr3D	96.774	31	1	0	2693	2723	567659920	567659890	5.000000e-03	52.8
23	TraesCS3B01G509500	chr3A	93.511	2096	80	20	801	2868	699762743	699764810	0.000000e+00	3066.0
24	TraesCS3B01G509500	chr3A	75.196	1528	278	62	1024	2523	698858311	698856857	1.970000e-176	628.0
25	TraesCS3B01G509500	chr3A	77.002	974	168	30	1579	2517	699750895	699751847	9.620000e-140	507.0
26	TraesCS3B01G509500	chr3A	87.440	207	17	7	599	800	699762418	699762620	2.330000e-56	230.0
27	TraesCS3B01G509500	chr3A	92.763	152	10	1	374	524	699762178	699762329	5.050000e-53	219.0
28	TraesCS3B01G509500	chr3A	78.171	339	70	3	1830	2167	699190151	699189816	2.350000e-51	213.0
29	TraesCS3B01G509500	chr3A	91.667	120	10	0	2889	3008	699764996	699765115	1.850000e-37	167.0
30	TraesCS3B01G509500	chr3A	93.458	107	4	1	3	109	335458060	335458163	4.010000e-34	156.0
31	TraesCS3B01G509500	chr3A	75.079	317	50	14	2555	2864	698856619	698856325	1.460000e-23	121.0
32	TraesCS3B01G509500	chr6D	89.502	943	74	15	1577	2499	380452260	380451323	0.000000e+00	1170.0
33	TraesCS3B01G509500	chr6D	85.241	935	96	30	628	1558	380453279	380452383	0.000000e+00	924.0
34	TraesCS3B01G509500	chr6D	91.824	318	21	4	2555	2870	380451317	380451003	3.560000e-119	438.0
35	TraesCS3B01G509500	chr6D	97.794	136	2	1	2874	3008	380450947	380450812	1.800000e-57	233.0
36	TraesCS3B01G509500	chr6B	86.806	955	89	25	606	1555	565398150	565399072	0.000000e+00	1031.0
37	TraesCS3B01G509500	chr6B	90.117	769	51	12	2121	2870	565399797	565400559	0.000000e+00	976.0
38	TraesCS3B01G509500	chr6B	88.926	605	55	7	1527	2124	565399086	565399685	0.000000e+00	736.0
39	TraesCS3B01G509500	chr6B	95.652	138	6	0	2871	3008	565400612	565400749	3.900000e-54	222.0
40	TraesCS3B01G509500	chr6B	92.908	141	10	0	384	524	565397848	565397988	3.930000e-49	206.0
41	TraesCS3B01G509500	chr5A	86.364	242	32	1	132	373	464202393	464202153	2.300000e-66	263.0
42	TraesCS3B01G509500	chr5A	85.141	249	35	2	126	373	141875178	141875425	1.380000e-63	254.0
43	TraesCS3B01G509500	chr5A	86.207	116	6	7	1	108	141874320	141874433	1.890000e-22	117.0
44	TraesCS3B01G509500	chr5B	85.833	240	33	1	134	373	429412600	429412362	1.380000e-63	254.0
45	TraesCS3B01G509500	chr5D	85.537	242	34	1	129	370	126566431	126566671	4.980000e-63	252.0
46	TraesCS3B01G509500	chr5D	78.512	242	51	1	129	370	87388232	87388472	1.120000e-34	158.0
47	TraesCS3B01G509500	chrUn	80.723	249	46	2	126	373	195376240	195375993	3.060000e-45	193.0
48	TraesCS3B01G509500	chr7B	80.992	242	45	1	129	370	129893794	129894034	1.100000e-44	191.0
49	TraesCS3B01G509500	chr1D	81.223	229	42	1	145	373	186025898	186025671	1.840000e-42	183.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G509500	chr3B	753671746	753674753	3007	False	5555.00	5555	100.000000	1	3008	1	chr3B.!!$F1	3007
1	TraesCS3B01G509500	chr3D	565602213	565606064	3851	False	1229.00	3240	93.676333	1	2870	3	chr3D.!!$F6	2869
2	TraesCS3B01G509500	chr3D	565535511	565536671	1160	False	723.00	723	78.250000	988	2174	1	chr3D.!!$F5	1186
3	TraesCS3B01G509500	chr3D	565258642	565260140	1498	False	529.00	529	74.015000	992	2519	1	chr3D.!!$F3	1527
4	TraesCS3B01G509500	chr3D	565326268	565327138	870	False	388.00	388	75.591000	1672	2523	1	chr3D.!!$F4	851
5	TraesCS3B01G509500	chr3D	564306519	564308529	2010	True	383.00	632	75.576500	994	2860	2	chr3D.!!$R6	1866
6	TraesCS3B01G509500	chr3A	699762178	699765115	2937	False	920.50	3066	91.345250	374	3008	4	chr3A.!!$F3	2634
7	TraesCS3B01G509500	chr3A	699750895	699751847	952	False	507.00	507	77.002000	1579	2517	1	chr3A.!!$F2	938
8	TraesCS3B01G509500	chr3A	698856325	698858311	1986	True	374.50	628	75.137500	1024	2864	2	chr3A.!!$R2	1840
9	TraesCS3B01G509500	chr6D	380450812	380453279	2467	True	691.25	1170	91.090250	628	3008	4	chr6D.!!$R1	2380
10	TraesCS3B01G509500	chr6B	565397848	565400749	2901	False	634.20	1031	90.881800	384	3008	5	chr6B.!!$F1	2624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
543	1520	0.517132	CAGCGAGTTTGATTGCGTCG	60.517	55.0	0.00	0.00	34.56	5.12	F
1875	3301	0.323302	TAAGTTGTGATGAGGCCGCA	59.677	50.0	12.99	12.99	0.00	5.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1902	3328	0.460311	ACCTCGCTTTCATAGTCCCG	59.540	55.000	0.00	0.0	0.0	5.14	R
2726	4555	1.342819	GCGGAGATGATCTTGCTAGGT	59.657	52.381	11.79	0.0	0.0	3.08	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	2.161855	TGCCTTGATGCAAACTAGGTG	58.838	47.619	19.28	0.00	38.56	4.00
49	50	1.474077	GCCTTGATGCAAACTAGGTGG	59.526	52.381	19.28	0.00	0.00	4.61
61	62	3.764237	ACTAGGTGGTGTTGTTGTAGG	57.236	47.619	0.00	0.00	0.00	3.18
70	71	3.119280	GGTGTTGTTGTAGGTTTGTGCTT	60.119	43.478	0.00	0.00	0.00	3.91
93	124	4.281435	TGCAAGTGACATTGGATTGATGTT	59.719	37.500	0.00	0.00	37.83	2.71
132	171	3.366374	GCATTTTCCACCTGACTACTTGC	60.366	47.826	0.00	0.00	0.00	4.01
158	197	1.886313	CTGCCATGAGCCAGCTACG	60.886	63.158	0.00	0.00	42.71	3.51
169	208	3.066814	AGCTACGGTCACGGGGAC	61.067	66.667	0.57	0.57	46.48	4.46
184	223	3.041940	GACGTGCACCAAGGACCG	61.042	66.667	12.15	0.00	34.68	4.79
189	228	4.740822	GCACCAAGGACCGGCCAT	62.741	66.667	15.92	2.51	40.02	4.40
202	241	1.452833	GGCCATGAAGAGGGAGCAC	60.453	63.158	0.00	0.00	0.00	4.40
208	247	0.967887	TGAAGAGGGAGCACGAGAGG	60.968	60.000	0.00	0.00	0.00	3.69
264	303	5.050126	AGAATCTCACCATGCTCATCATT	57.950	39.130	0.00	0.00	31.79	2.57
269	308	2.433970	TCACCATGCTCATCATTCCGTA	59.566	45.455	0.00	0.00	31.79	4.02
309	348	4.402851	GCAGTGGCTGGTGATGAA	57.597	55.556	0.00	0.00	36.96	2.57
310	349	2.177950	GCAGTGGCTGGTGATGAAG	58.822	57.895	0.00	0.00	36.96	3.02
311	350	1.930908	GCAGTGGCTGGTGATGAAGC	61.931	60.000	0.00	0.00	38.76	3.86
316	355	3.494378	CTGGTGATGAAGCCAGCG	58.506	61.111	0.00	0.00	44.65	5.18
317	356	2.747460	TGGTGATGAAGCCAGCGC	60.747	61.111	0.00	0.00	38.38	5.92
318	357	3.869272	GGTGATGAAGCCAGCGCG	61.869	66.667	0.00	0.00	39.87	6.86
356	395	1.299541	CAACAAGTGGTGCGAGTTCT	58.700	50.000	0.00	0.00	0.00	3.01
370	409	1.420138	GAGTTCTGGGTTCAGGTCCAA	59.580	52.381	0.00	0.00	41.23	3.53
381	1314	7.700846	TGGGTTCAGGTCCAAAAATACTATTA	58.299	34.615	0.00	0.00	0.00	0.98
446	1380	5.449041	GCATTTCGATGGCTCAATTTCTACA	60.449	40.000	0.00	0.00	0.00	2.74
543	1520	0.517132	CAGCGAGTTTGATTGCGTCG	60.517	55.000	0.00	0.00	34.56	5.12
544	1521	0.666274	AGCGAGTTTGATTGCGTCGA	60.666	50.000	0.00	0.00	34.56	4.20
546	1523	1.589968	GCGAGTTTGATTGCGTCGATC	60.590	52.381	0.00	0.00	32.32	3.69
547	1524	1.920574	CGAGTTTGATTGCGTCGATCT	59.079	47.619	0.00	0.00	32.32	2.75
548	1525	2.345641	CGAGTTTGATTGCGTCGATCTT	59.654	45.455	0.00	0.00	32.32	2.40
549	1526	3.663908	GAGTTTGATTGCGTCGATCTTG	58.336	45.455	0.00	0.00	0.00	3.02
550	1527	3.067106	AGTTTGATTGCGTCGATCTTGT	58.933	40.909	0.00	0.00	0.00	3.16
557	1559	4.481930	TTGCGTCGATCTTGTGATTTTT	57.518	36.364	0.00	0.00	32.19	1.94
604	1613	2.724520	CCAAGCTTGGTCTTGTGCT	58.275	52.632	33.46	0.00	43.43	4.40
912	2148	3.991536	GAGCGAGTCCGTTCCTGGC	62.992	68.421	0.00	0.00	39.62	4.85
973	2224	1.300233	GGACGTGGATCTGGCGATC	60.300	63.158	0.00	9.78	44.31	3.69
974	2225	1.658717	GACGTGGATCTGGCGATCG	60.659	63.158	11.69	11.69	45.66	3.69
975	2226	2.060004	GACGTGGATCTGGCGATCGA	62.060	60.000	21.57	0.00	45.66	3.59
976	2227	1.287191	CGTGGATCTGGCGATCGAT	59.713	57.895	21.57	2.41	45.66	3.59
1365	2638	5.491070	CTCCTCCTCATTTCACACAACATA	58.509	41.667	0.00	0.00	0.00	2.29
1513	2789	1.069364	GCGAGTACCGGATACTAGTGC	60.069	57.143	9.46	12.79	44.64	4.40
1622	3048	2.042162	AGCCATTGAGGAACATCAGGTT	59.958	45.455	0.00	0.00	44.10	3.50
1633	3059	3.976490	ATCAGGTTCCCGCCGGAGA	62.976	63.158	5.05	0.00	40.10	3.71
1662	3088	1.537202	CTGCTTTTACACTGTGAGGCC	59.463	52.381	15.86	0.00	0.00	5.19
1665	3091	0.887387	TTTTACACTGTGAGGCCGCC	60.887	55.000	15.86	0.00	0.00	6.13
1666	3092	2.046009	TTTACACTGTGAGGCCGCCA	62.046	55.000	15.86	0.00	0.00	5.69
1667	3093	1.836999	TTACACTGTGAGGCCGCCAT	61.837	55.000	15.86	0.00	0.00	4.40
1684	3110	3.504863	GCCATGACAGCTGTTATGTTTG	58.495	45.455	35.73	26.29	39.51	2.93
1875	3301	0.323302	TAAGTTGTGATGAGGCCGCA	59.677	50.000	12.99	12.99	0.00	5.69
1901	3327	1.794701	CATCGATATCTGGGTGTTGCG	59.205	52.381	0.00	0.00	0.00	4.85
1902	3328	0.529773	TCGATATCTGGGTGTTGCGC	60.530	55.000	0.00	0.00	0.00	6.09
1903	3329	1.821241	CGATATCTGGGTGTTGCGCG	61.821	60.000	0.00	0.00	0.00	6.86
2174	3718	5.991606	TCCACATACTTTCTTTCTGACACTG	59.008	40.000	0.00	0.00	0.00	3.66
2214	3786	1.348696	TGAATGCTGAAGGCTGTGAGA	59.651	47.619	0.00	0.00	42.39	3.27
2290	3868	7.083062	TGAATCAGATCCACCATAAGCTTAT	57.917	36.000	13.37	13.37	0.00	1.73
2499	4102	8.299570	TCTTGAACTGAAGAATTATTTTGCTCC	58.700	33.333	0.00	0.00	0.00	4.70
2550	4368	9.638239	AATATTTACCAATCAACATGTGTTCAC	57.362	29.630	0.00	0.00	35.83	3.18
2551	4369	6.707440	TTTACCAATCAACATGTGTTCACT	57.293	33.333	0.00	0.00	35.83	3.41
2552	4370	6.707440	TTACCAATCAACATGTGTTCACTT	57.293	33.333	0.00	0.00	35.83	3.16
2553	4371	5.596836	ACCAATCAACATGTGTTCACTTT	57.403	34.783	0.00	0.00	35.83	2.66
2554	4372	6.707440	ACCAATCAACATGTGTTCACTTTA	57.293	33.333	0.00	0.00	35.83	1.85
2651	4475	2.032620	ACCTGTACTGATAAGCCGAGG	58.967	52.381	0.60	0.00	0.00	4.63
2726	4555	4.796946	GCCATGTTCATTTTTCTGTGCTGA	60.797	41.667	0.00	0.00	0.00	4.26
2728	4557	4.305989	TGTTCATTTTTCTGTGCTGACC	57.694	40.909	0.00	0.00	0.00	4.02
2756	4585	0.824109	TCATCTCCGCTACTGTTGGG	59.176	55.000	0.00	0.00	0.00	4.12
2760	4589	0.323629	CTCCGCTACTGTTGGGGAAA	59.676	55.000	23.44	7.72	44.17	3.13
2770	4599	4.101114	ACTGTTGGGGAAAGGAAGTTTTT	58.899	39.130	0.00	0.00	0.00	1.94
2803	4632	0.318441	TCAAGCAGAGGACAAGACCG	59.682	55.000	0.00	0.00	34.73	4.79
2860	4690	6.460123	GCAAGTTGAAAGTTCCTTCTCATCAA	60.460	38.462	7.16	0.00	0.00	2.57
2930	4925	3.055385	GGATGACTGGGCACTTGTTACTA	60.055	47.826	0.00	0.00	0.00	1.82
2971	4966	0.971386	CAGGGGCAATTGTTCAGCTT	59.029	50.000	7.40	0.00	0.00	3.74

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	2.425668	AGCACAAACCTACAACAACACC	59.574	45.455	0.00	0.00	0.00	4.16
49	50	3.775661	AGCACAAACCTACAACAACAC	57.224	42.857	0.00	0.00	0.00	3.32
61	62	2.276472	TGTCACTTGCAAGCACAAAC	57.724	45.000	26.27	16.18	0.00	2.93
70	71	3.827876	ACATCAATCCAATGTCACTTGCA	59.172	39.130	0.00	0.00	31.82	4.08
93	124	3.751479	ATGCATACCAATCTAGCACGA	57.249	42.857	0.00	0.00	38.12	4.35
132	171	2.513204	CTCATGGCAGCGACCCTG	60.513	66.667	0.00	0.00	44.67	4.45
177	216	1.604378	CTCTTCATGGCCGGTCCTT	59.396	57.895	2.12	0.00	35.26	3.36
184	223	1.452833	GTGCTCCCTCTTCATGGCC	60.453	63.158	0.00	0.00	0.00	5.36
189	228	0.967887	CCTCTCGTGCTCCCTCTTCA	60.968	60.000	0.00	0.00	0.00	3.02
202	241	2.329379	GTAGAAACACAGTGCCTCTCG	58.671	52.381	8.03	0.00	0.00	4.04
208	247	5.404366	TGATCTAAACGTAGAAACACAGTGC	59.596	40.000	0.00	0.00	39.81	4.40
264	303	1.553248	CCTCCATGAACTTGGTACGGA	59.447	52.381	0.00	0.00	38.01	4.69
269	308	2.644299	TCATCACCTCCATGAACTTGGT	59.356	45.455	0.00	0.00	38.01	3.67
301	340	3.869272	CGCGCTGGCTTCATCACC	61.869	66.667	5.56	0.00	36.88	4.02
302	341	4.527157	GCGCGCTGGCTTCATCAC	62.527	66.667	26.67	0.00	36.88	3.06
356	395	4.463050	AGTATTTTTGGACCTGAACCCA	57.537	40.909	0.00	0.00	0.00	4.51
381	1314	2.556622	CCAAACCTTGTTGATTAGCCGT	59.443	45.455	0.00	0.00	0.00	5.68
423	1357	6.122850	TGTAGAAATTGAGCCATCGAAATG	57.877	37.500	0.00	0.00	0.00	2.32
446	1380	5.713389	TCTTGGCTCAATGAAATGTTCAGAT	59.287	36.000	0.00	0.00	43.98	2.90
639	1692	7.705325	AGCTTTATTGATCAGCAAACATGATTC	59.295	33.333	0.00	0.00	40.48	2.52
643	1696	6.417044	GCTAGCTTTATTGATCAGCAAACATG	59.583	38.462	7.70	0.00	40.48	3.21
756	1843	9.167311	GATCACCACAGACTAACAGAATATTTT	57.833	33.333	0.00	0.00	0.00	1.82
766	1853	3.935203	CCACATGATCACCACAGACTAAC	59.065	47.826	0.00	0.00	0.00	2.34
912	2148	6.072397	CGTGAGGAAATGGATACTCCTAGTAG	60.072	46.154	0.00	0.00	39.76	2.57
973	2224	4.598894	CTGGGAGGCTGCCGATCG	62.599	72.222	20.76	8.51	0.00	3.69
974	2225	4.925861	GCTGGGAGGCTGCCGATC	62.926	72.222	20.76	6.18	0.00	3.69
1236	2503	1.272258	TGGTCGTAGGTGATGAGGTCA	60.272	52.381	0.00	0.00	0.00	4.02
1622	3048	3.849951	GCTCAATCTCCGGCGGGA	61.850	66.667	27.98	21.92	41.08	5.14
1662	3088	1.372582	ACATAACAGCTGTCATGGCG	58.627	50.000	29.39	14.07	34.52	5.69
1665	3091	4.478699	CACCAAACATAACAGCTGTCATG	58.521	43.478	25.62	25.62	0.00	3.07
1666	3092	3.507233	CCACCAAACATAACAGCTGTCAT	59.493	43.478	21.95	8.65	0.00	3.06
1667	3093	2.884012	CCACCAAACATAACAGCTGTCA	59.116	45.455	21.95	5.78	0.00	3.58
1684	3110	2.658422	CCAATGCAGGTTGCCACC	59.342	61.111	0.00	0.00	44.23	4.61
1875	3301	5.825593	ACACCCAGATATCGATGGTATTT	57.174	39.130	8.54	0.00	34.58	1.40
1901	3327	0.876342	CCTCGCTTTCATAGTCCCGC	60.876	60.000	0.00	0.00	0.00	6.13
1902	3328	0.460311	ACCTCGCTTTCATAGTCCCG	59.540	55.000	0.00	0.00	0.00	5.14
1903	3329	1.757699	AGACCTCGCTTTCATAGTCCC	59.242	52.381	0.00	0.00	0.00	4.46
2174	3718	7.360438	GCATTCAGACGAACCATCTATTATTCC	60.360	40.741	0.00	0.00	32.81	3.01
2214	3786	4.878397	GTCTAGCACATAAAGAAGCACCAT	59.122	41.667	0.00	0.00	0.00	3.55
2382	3984	3.194116	AGAATCAACATGCACAACCATCC	59.806	43.478	0.00	0.00	0.00	3.51
2552	4370	9.958180	TCCAGTTCAATCTTATGTTCAGATTAA	57.042	29.630	0.00	0.00	38.67	1.40
2553	4371	9.605275	CTCCAGTTCAATCTTATGTTCAGATTA	57.395	33.333	0.00	0.00	38.67	1.75
2554	4372	7.555554	CCTCCAGTTCAATCTTATGTTCAGATT	59.444	37.037	0.00	0.00	40.92	2.40
2651	4475	1.374758	CAGGACCTGACAAGCCGTC	60.375	63.158	17.22	0.00	45.61	4.79
2726	4555	1.342819	GCGGAGATGATCTTGCTAGGT	59.657	52.381	11.79	0.00	0.00	3.08
2728	4557	3.505680	AGTAGCGGAGATGATCTTGCTAG	59.494	47.826	22.52	5.34	39.63	3.42
2770	4599	5.337089	CCTCTGCTTGAGACAAGATGAGTAA	60.337	44.000	14.44	0.00	45.39	2.24
2803	4632	7.031226	ACTGCATCACCACATAATAATTGAC	57.969	36.000	0.00	0.00	0.00	3.18
2971	4966	5.407407	AGAAGAGTCGCCTAAATTTGAGA	57.593	39.130	0.00	0.00	0.00	3.27

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.