Multiple sequence alignment - TraesCS3B01G508900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G508900 chr3B 100.000 3167 0 0 1 3167 752974248 752971082 0.000000e+00 5849.0
1 TraesCS3B01G508900 chr3B 79.869 457 86 4 1696 2149 752210470 752210017 2.350000e-86 329.0
2 TraesCS3B01G508900 chr3B 77.758 562 77 23 932 1456 752137427 752136877 5.130000e-78 302.0
3 TraesCS3B01G508900 chr3B 90.338 207 17 3 992 1195 773747041 773747247 5.210000e-68 268.0
4 TraesCS3B01G508900 chr3B 86.667 240 32 0 987 1226 753672732 753672971 1.870000e-67 267.0
5 TraesCS3B01G508900 chr3B 84.270 178 18 9 1285 1459 753561329 753561499 7.030000e-37 165.0
6 TraesCS3B01G508900 chr3B 98.039 51 1 0 1600 1650 752972613 752972563 4.350000e-14 89.8
7 TraesCS3B01G508900 chr3B 98.039 51 1 0 1636 1686 752972649 752972599 4.350000e-14 89.8
8 TraesCS3B01G508900 chr3A 84.711 1923 169 62 815 2670 699533173 699535037 0.000000e+00 1807.0
9 TraesCS3B01G508900 chr3A 80.198 707 127 10 1696 2394 699108658 699107957 4.680000e-143 518.0
10 TraesCS3B01G508900 chr3A 76.364 495 111 4 1672 2163 700351649 700351158 8.710000e-66 261.0
11 TraesCS3B01G508900 chr3A 81.604 212 32 5 992 1200 700025588 700025381 5.430000e-38 169.0
12 TraesCS3B01G508900 chr3A 85.065 154 20 1 2715 2865 699535124 699535277 1.520000e-33 154.0
13 TraesCS3B01G508900 chr3A 72.394 518 127 12 1702 2210 708672758 708672248 1.970000e-32 150.0
14 TraesCS3B01G508900 chr3A 100.000 30 0 0 1289 1318 714939618 714939647 4.410000e-04 56.5
15 TraesCS3B01G508900 chr5A 92.365 799 61 0 1 799 556437893 556438691 0.000000e+00 1138.0
16 TraesCS3B01G508900 chr2A 89.888 801 79 2 1 799 84006252 84005452 0.000000e+00 1029.0
17 TraesCS3B01G508900 chr2A 88.291 743 87 0 1 743 393508690 393509432 0.000000e+00 891.0
18 TraesCS3B01G508900 chr2A 88.991 218 24 0 993 1210 45080060 45080277 1.450000e-68 270.0
19 TraesCS3B01G508900 chr2A 73.013 541 142 4 21 559 66310720 66311258 1.500000e-43 187.0
20 TraesCS3B01G508900 chr3D 89.401 651 48 10 1012 1645 565077503 565078149 0.000000e+00 800.0
21 TraesCS3B01G508900 chr3D 93.506 308 18 2 2860 3167 565078552 565078857 1.040000e-124 457.0
22 TraesCS3B01G508900 chr3D 77.641 729 129 14 1696 2394 564399348 564398624 2.270000e-111 412.0
23 TraesCS3B01G508900 chr3D 95.890 219 9 0 2622 2840 565078162 565078380 3.890000e-94 355.0
24 TraesCS3B01G508900 chr3D 79.261 487 89 6 1672 2149 564530727 564530244 2.350000e-86 329.0
25 TraesCS3B01G508900 chr3D 79.121 455 86 5 1701 2149 564523452 564523001 3.970000e-79 305.0
26 TraesCS3B01G508900 chr3D 90.455 220 19 2 987 1205 565830734 565830952 4.000000e-74 289.0
27 TraesCS3B01G508900 chr3D 91.304 207 18 0 992 1198 565641910 565642116 1.860000e-72 283.0
28 TraesCS3B01G508900 chr3D 86.475 244 33 0 992 1235 565162776 565163019 5.210000e-68 268.0
29 TraesCS3B01G508900 chr3D 72.516 644 158 11 1696 2328 565642590 565643225 1.160000e-44 191.0
30 TraesCS3B01G508900 chr3D 80.889 225 27 13 1240 1456 565535801 565536017 2.530000e-36 163.0
31 TraesCS3B01G508900 chr3D 72.222 486 116 13 1702 2176 562420184 562419707 7.130000e-27 132.0
32 TraesCS3B01G508900 chr3D 82.581 155 16 7 815 967 565075192 565075337 3.320000e-25 126.0
33 TraesCS3B01G508900 chr3D 79.532 171 32 3 1702 1871 565814217 565814385 5.550000e-23 119.0
34 TraesCS3B01G508900 chr3D 71.754 439 112 8 1712 2141 565831426 565831861 2.580000e-21 113.0
35 TraesCS3B01G508900 chr3D 100.000 30 0 0 1289 1318 579697922 579697951 4.410000e-04 56.5
36 TraesCS3B01G508900 chr2B 80.916 655 120 5 25 677 584733773 584733122 2.180000e-141 512.0
37 TraesCS3B01G508900 chr2B 84.926 272 34 6 942 1209 68196062 68196330 5.210000e-68 268.0
38 TraesCS3B01G508900 chr2B 100.000 29 0 0 1290 1318 755345201 755345229 2.000000e-03 54.7
39 TraesCS3B01G508900 chrUn 81.281 609 111 3 58 665 30493849 30493243 1.020000e-134 490.0
40 TraesCS3B01G508900 chrUn 75.815 368 70 13 1784 2140 314515552 314515193 5.430000e-38 169.0
41 TraesCS3B01G508900 chrUn 72.394 518 127 12 1702 2210 294932885 294932375 1.970000e-32 150.0
42 TraesCS3B01G508900 chr7D 78.701 662 136 3 1 659 528096068 528095409 1.350000e-118 436.0
43 TraesCS3B01G508900 chr4A 72.978 544 141 6 20 560 650767753 650767213 5.390000e-43 185.0
44 TraesCS3B01G508900 chr6D 75.758 297 54 13 1980 2265 25767822 25768111 1.980000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G508900 chr3B 752971082 752974248 3166 True 2009.533333 5849 98.692667 1 3167 3 chr3B.!!$R3 3166
1 TraesCS3B01G508900 chr3B 752136877 752137427 550 True 302.000000 302 77.758000 932 1456 1 chr3B.!!$R1 524
2 TraesCS3B01G508900 chr3A 699533173 699535277 2104 False 980.500000 1807 84.888000 815 2865 2 chr3A.!!$F2 2050
3 TraesCS3B01G508900 chr3A 699107957 699108658 701 True 518.000000 518 80.198000 1696 2394 1 chr3A.!!$R1 698
4 TraesCS3B01G508900 chr5A 556437893 556438691 798 False 1138.000000 1138 92.365000 1 799 1 chr5A.!!$F1 798
5 TraesCS3B01G508900 chr2A 84005452 84006252 800 True 1029.000000 1029 89.888000 1 799 1 chr2A.!!$R1 798
6 TraesCS3B01G508900 chr2A 393508690 393509432 742 False 891.000000 891 88.291000 1 743 1 chr2A.!!$F3 742
7 TraesCS3B01G508900 chr3D 565075192 565078857 3665 False 434.500000 800 90.344500 815 3167 4 chr3D.!!$F5 2352
8 TraesCS3B01G508900 chr3D 564398624 564399348 724 True 412.000000 412 77.641000 1696 2394 1 chr3D.!!$R2 698
9 TraesCS3B01G508900 chr3D 565641910 565643225 1315 False 237.000000 283 81.910000 992 2328 2 chr3D.!!$F6 1336
10 TraesCS3B01G508900 chr3D 565830734 565831861 1127 False 201.000000 289 81.104500 987 2141 2 chr3D.!!$F7 1154
11 TraesCS3B01G508900 chr2B 584733122 584733773 651 True 512.000000 512 80.916000 25 677 1 chr2B.!!$R1 652
12 TraesCS3B01G508900 chrUn 30493243 30493849 606 True 490.000000 490 81.281000 58 665 1 chrUn.!!$R1 607
13 TraesCS3B01G508900 chr7D 528095409 528096068 659 True 436.000000 436 78.701000 1 659 1 chr7D.!!$R1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 985 0.249741 GCCGTCACTACCACAACACT 60.250 55.0 0.0 0.0 0.00 3.55 F
1674 3914 0.105453 ATCGGTACCTGGAGGAGCAT 60.105 55.0 10.9 0.0 38.94 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 4056 1.332195 GGCCCTGGATCATTAAAGCC 58.668 55.000 0.00 0.0 0.00 4.35 R
2810 5149 2.959484 ATGTCGTGGGGCCTGACAG 61.959 63.158 23.63 0.0 44.94 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.297820 GCGCTTAGTTTCACGGATCG 59.702 55.000 0.00 0.00 0.00 3.69
30 31 5.571784 TTAGTTTCACGGATCGTAGACAT 57.428 39.130 0.00 0.00 42.51 3.06
72 73 5.573219 TGAGACATCAATTCTGACCCAAAT 58.427 37.500 0.00 0.00 33.30 2.32
92 93 2.352388 TGCGATAAAAGTTTCCCGAGG 58.648 47.619 7.97 0.00 0.00 4.63
139 140 1.354705 AGAAACTCCCCCACTTTAGCC 59.645 52.381 0.00 0.00 0.00 3.93
179 180 1.479323 GGGCGTACAGATCTGGTACAA 59.521 52.381 26.08 4.00 40.84 2.41
233 234 4.261994 CCATCTTGATGGTCGTTGGTTTTT 60.262 41.667 18.72 0.00 36.95 1.94
285 286 4.047125 CCCCCGGAAGTGCCATGT 62.047 66.667 0.73 0.00 35.94 3.21
291 292 1.597797 CGGAAGTGCCATGTGCCATT 61.598 55.000 4.07 0.00 40.16 3.16
335 336 1.734465 CAAGGCACGAGAATTGGACTC 59.266 52.381 0.00 0.00 0.00 3.36
397 398 1.747709 CCAAGTCCCAAGCAGATCTG 58.252 55.000 18.84 18.84 0.00 2.90
402 403 5.012458 CCAAGTCCCAAGCAGATCTGATATA 59.988 44.000 27.04 3.73 0.00 0.86
496 497 1.003580 GGTGGTGCTTCCTTCTCATCA 59.996 52.381 0.80 0.00 37.07 3.07
642 644 4.408921 AGATTGGATCAGGTGTTCGGATAA 59.591 41.667 0.00 0.00 30.52 1.75
665 669 1.585006 CCAACTCCGTCGTACTGCT 59.415 57.895 0.00 0.00 0.00 4.24
735 739 1.205655 CCAGCAAGAAGAGGATCGACA 59.794 52.381 0.00 0.00 42.67 4.35
739 743 2.932622 GCAAGAAGAGGATCGACAGCAA 60.933 50.000 0.00 0.00 42.67 3.91
750 754 4.335647 ACAGCAAGGACGGCCAGG 62.336 66.667 11.69 0.55 36.29 4.45
799 803 2.287129 GCGCGAGAAACAAAACCCTAAA 60.287 45.455 12.10 0.00 0.00 1.85
800 804 3.792794 GCGCGAGAAACAAAACCCTAAAA 60.793 43.478 12.10 0.00 0.00 1.52
801 805 4.352887 CGCGAGAAACAAAACCCTAAAAA 58.647 39.130 0.00 0.00 0.00 1.94
802 806 4.439776 CGCGAGAAACAAAACCCTAAAAAG 59.560 41.667 0.00 0.00 0.00 2.27
803 807 5.584442 GCGAGAAACAAAACCCTAAAAAGA 58.416 37.500 0.00 0.00 0.00 2.52
804 808 6.037726 GCGAGAAACAAAACCCTAAAAAGAA 58.962 36.000 0.00 0.00 0.00 2.52
805 809 6.020121 GCGAGAAACAAAACCCTAAAAAGAAC 60.020 38.462 0.00 0.00 0.00 3.01
806 810 7.255569 CGAGAAACAAAACCCTAAAAAGAACT 58.744 34.615 0.00 0.00 0.00 3.01
807 811 7.220108 CGAGAAACAAAACCCTAAAAAGAACTG 59.780 37.037 0.00 0.00 0.00 3.16
808 812 7.903145 AGAAACAAAACCCTAAAAAGAACTGT 58.097 30.769 0.00 0.00 0.00 3.55
809 813 8.033038 AGAAACAAAACCCTAAAAAGAACTGTC 58.967 33.333 0.00 0.00 0.00 3.51
810 814 7.476540 AACAAAACCCTAAAAAGAACTGTCT 57.523 32.000 0.00 0.00 34.72 3.41
811 815 7.476540 ACAAAACCCTAAAAAGAACTGTCTT 57.523 32.000 0.00 0.00 46.47 3.01
812 816 7.320399 ACAAAACCCTAAAAAGAACTGTCTTG 58.680 34.615 0.00 0.00 43.59 3.02
813 817 7.039293 ACAAAACCCTAAAAAGAACTGTCTTGT 60.039 33.333 0.00 0.00 43.59 3.16
814 818 7.476540 AAACCCTAAAAAGAACTGTCTTGTT 57.523 32.000 0.00 0.00 43.59 2.83
815 819 8.584063 AAACCCTAAAAAGAACTGTCTTGTTA 57.416 30.769 0.45 0.45 43.59 2.41
816 820 8.762481 AACCCTAAAAAGAACTGTCTTGTTAT 57.238 30.769 0.69 0.00 43.59 1.89
850 854 2.552031 GAACCTGGGCTAACGAAGATC 58.448 52.381 0.00 0.00 0.00 2.75
853 857 2.093447 ACCTGGGCTAACGAAGATCTTG 60.093 50.000 14.00 7.95 0.00 3.02
878 882 2.768527 CCAGCCCATATACGATCTCCAT 59.231 50.000 0.00 0.00 0.00 3.41
879 883 3.181471 CCAGCCCATATACGATCTCCATC 60.181 52.174 0.00 0.00 0.00 3.51
899 903 3.153130 TCTCTATTCGAGATGGGCTCAG 58.847 50.000 0.00 0.00 43.72 3.35
917 921 1.153509 GTGCAGCCCAAATGCCATC 60.154 57.895 0.00 0.00 43.18 3.51
919 923 2.105528 CAGCCCAAATGCCATCGC 59.894 61.111 0.00 0.00 0.00 4.58
936 954 1.519719 GCAGCCTGACCTGACCTAG 59.480 63.158 0.00 0.00 34.77 3.02
967 985 0.249741 GCCGTCACTACCACAACACT 60.250 55.000 0.00 0.00 0.00 3.55
968 986 1.497991 CCGTCACTACCACAACACTG 58.502 55.000 0.00 0.00 0.00 3.66
983 2270 2.263852 CTGCTCTTGCTCCGCTCA 59.736 61.111 0.00 0.00 40.48 4.26
1287 3506 1.056700 ACAGGGCCTTCTGTCTGTGT 61.057 55.000 1.32 0.00 43.82 3.72
1328 3547 1.404315 CCTCCTTTCCGAGTACAGCAC 60.404 57.143 0.00 0.00 0.00 4.40
1362 3581 1.034292 GCTTCTCCATCTGCAACCCC 61.034 60.000 0.00 0.00 0.00 4.95
1449 3668 2.494918 CCTTCAGGCGAGTACCGG 59.505 66.667 0.00 0.00 39.04 5.28
1459 3678 1.666311 GCGAGTACCGGATACTGATGC 60.666 57.143 9.46 11.64 44.64 3.91
1463 3682 3.551046 GAGTACCGGATACTGATGCACAG 60.551 52.174 9.46 12.81 44.64 3.66
1484 3703 1.620323 GGAAGCTGGTTTTCTGGCAAT 59.380 47.619 0.00 0.00 0.00 3.56
1589 3829 4.130255 GGTACCTGTCCTGCTCCA 57.870 61.111 4.06 0.00 0.00 3.86
1629 3869 3.194968 ACCTAGACAAACATCGGTACCTG 59.805 47.826 10.90 4.86 0.00 4.00
1633 3873 1.278127 ACAAACATCGGTACCTGGAGG 59.722 52.381 10.90 5.11 42.17 4.30
1651 3891 0.253044 GGAGCATTGGCACCTAGACA 59.747 55.000 0.00 0.00 46.05 3.41
1659 3899 3.469008 TGGCACCTAGACAAATATCGG 57.531 47.619 0.00 0.00 26.55 4.18
1660 3900 2.769663 TGGCACCTAGACAAATATCGGT 59.230 45.455 0.00 0.00 26.55 4.69
1661 3901 3.962063 TGGCACCTAGACAAATATCGGTA 59.038 43.478 0.00 0.00 26.55 4.02
1662 3902 4.202182 TGGCACCTAGACAAATATCGGTAC 60.202 45.833 0.00 0.00 26.55 3.34
1663 3903 4.304939 GCACCTAGACAAATATCGGTACC 58.695 47.826 0.16 0.16 0.00 3.34
1664 3904 4.038883 GCACCTAGACAAATATCGGTACCT 59.961 45.833 10.90 0.00 0.00 3.08
1665 3905 5.529791 CACCTAGACAAATATCGGTACCTG 58.470 45.833 10.90 2.46 0.00 4.00
1666 3906 4.587684 ACCTAGACAAATATCGGTACCTGG 59.412 45.833 10.90 0.00 0.00 4.45
1667 3907 4.831155 CCTAGACAAATATCGGTACCTGGA 59.169 45.833 10.90 0.52 0.00 3.86
1668 3908 4.939052 AGACAAATATCGGTACCTGGAG 57.061 45.455 10.90 0.00 0.00 3.86
1669 3909 3.641906 AGACAAATATCGGTACCTGGAGG 59.358 47.826 10.90 0.00 42.17 4.30
1670 3910 3.640029 GACAAATATCGGTACCTGGAGGA 59.360 47.826 10.90 0.00 38.94 3.71
1671 3911 3.641906 ACAAATATCGGTACCTGGAGGAG 59.358 47.826 10.90 0.00 38.94 3.69
1672 3912 1.926108 ATATCGGTACCTGGAGGAGC 58.074 55.000 10.90 0.00 38.94 4.70
1673 3913 0.554305 TATCGGTACCTGGAGGAGCA 59.446 55.000 10.90 0.00 38.94 4.26
1674 3914 0.105453 ATCGGTACCTGGAGGAGCAT 60.105 55.000 10.90 0.00 38.94 3.79
1675 3915 0.325296 TCGGTACCTGGAGGAGCATT 60.325 55.000 10.90 0.00 38.94 3.56
1676 3916 0.179073 CGGTACCTGGAGGAGCATTG 60.179 60.000 10.90 0.00 38.94 2.82
1677 3917 0.181350 GGTACCTGGAGGAGCATTGG 59.819 60.000 4.06 0.00 38.94 3.16
1678 3918 0.464554 GTACCTGGAGGAGCATTGGC 60.465 60.000 0.00 0.00 38.94 4.52
1679 3919 0.913934 TACCTGGAGGAGCATTGGCA 60.914 55.000 0.00 0.00 39.87 4.92
1680 3920 1.751927 CCTGGAGGAGCATTGGCAC 60.752 63.158 0.00 0.00 44.61 5.01
1687 3927 1.602311 GGAGCATTGGCACCTAGATG 58.398 55.000 0.00 0.00 46.05 2.90
1688 3928 1.141657 GGAGCATTGGCACCTAGATGA 59.858 52.381 0.00 0.00 46.05 2.92
1689 3929 2.224719 GGAGCATTGGCACCTAGATGAT 60.225 50.000 0.00 0.00 46.05 2.45
1693 3933 4.287845 AGCATTGGCACCTAGATGATCATA 59.712 41.667 8.54 0.00 44.61 2.15
1694 3934 5.045066 AGCATTGGCACCTAGATGATCATAT 60.045 40.000 8.54 8.31 44.61 1.78
1714 3954 8.543862 TCATATGAGCAGAAGCAACATTATAG 57.456 34.615 0.00 0.00 45.49 1.31
1730 3970 8.328146 CAACATTATAGTTGTATTCGACACCAG 58.672 37.037 0.00 0.00 42.93 4.00
1734 3974 4.330944 AGTTGTATTCGACACCAGAACA 57.669 40.909 0.00 0.00 37.96 3.18
1752 3992 3.662247 ACAGAGACGTTTCGGAAGATT 57.338 42.857 12.97 0.00 41.60 2.40
1774 4014 0.836606 TGCTCCAGTTGTTCCTGACA 59.163 50.000 0.00 0.00 34.23 3.58
1828 4068 3.304257 CGGCATGTCTGGCTTTAATGATC 60.304 47.826 0.00 0.00 45.42 2.92
1871 4117 3.055458 TGGATGATGCAGGACTACGAAAA 60.055 43.478 0.00 0.00 0.00 2.29
1906 4152 4.461081 CCTTGAAATACCGGGTTGAATTGA 59.539 41.667 4.31 0.00 0.00 2.57
1907 4153 5.047660 CCTTGAAATACCGGGTTGAATTGAA 60.048 40.000 4.31 0.00 0.00 2.69
1919 4165 5.105635 GGGTTGAATTGAAGAATGCAGATCA 60.106 40.000 0.00 0.00 28.11 2.92
1940 4189 0.588252 CTCCTTGTGCAGTTTGGTCG 59.412 55.000 0.00 0.00 0.00 4.79
1941 4190 0.107410 TCCTTGTGCAGTTTGGTCGT 60.107 50.000 0.00 0.00 0.00 4.34
1951 4200 3.095738 CAGTTTGGTCGTTTTGTCGAAC 58.904 45.455 0.00 0.00 46.13 3.95
2016 4265 1.282875 GGTCAAGTTTGGCGAGTGC 59.717 57.895 0.00 0.00 41.71 4.40
2034 4283 5.460419 CGAGTGCCTACTTCAGTTTGATATC 59.540 44.000 0.00 0.00 37.25 1.63
2050 4299 4.858850 TGATATCAATGGCAAGTTGGTCT 58.141 39.130 1.98 0.00 0.00 3.85
2056 4308 2.136298 TGGCAAGTTGGTCTGTTTCA 57.864 45.000 4.75 0.00 0.00 2.69
2067 4319 2.552315 GGTCTGTTTCAATCGCAAAGGA 59.448 45.455 0.00 0.00 0.00 3.36
2136 4388 2.961526 TCTTTCCGACACTAGATGGC 57.038 50.000 0.00 0.00 0.00 4.40
2206 4480 2.403252 GCTTCTTAGCAGCCAACCTA 57.597 50.000 0.00 0.00 46.95 3.08
2207 4481 2.010497 GCTTCTTAGCAGCCAACCTAC 58.990 52.381 0.00 0.00 46.95 3.18
2218 4492 2.772515 AGCCAACCTACCTGTATCCTTC 59.227 50.000 0.00 0.00 0.00 3.46
2223 4497 3.917300 ACCTACCTGTATCCTTCTGAGG 58.083 50.000 0.00 0.00 45.02 3.86
2226 4500 3.474798 ACCTGTATCCTTCTGAGGTGA 57.525 47.619 0.00 0.00 43.97 4.02
2258 4532 1.140312 TTGGATCCACTATGAGCCCC 58.860 55.000 15.91 0.00 40.14 5.80
2266 4540 2.609747 CACTATGAGCCCCCTAGCTTA 58.390 52.381 0.00 0.00 45.15 3.09
2270 4544 4.665483 ACTATGAGCCCCCTAGCTTATTTT 59.335 41.667 0.00 0.00 45.15 1.82
2398 4678 4.980434 GCTGATGCTAAAATTACCATGCTG 59.020 41.667 0.00 0.00 36.03 4.41
2406 4686 4.535526 AAATTACCATGCTGTTTGGGTC 57.464 40.909 0.00 0.00 38.64 4.46
2407 4687 2.969821 TTACCATGCTGTTTGGGTCT 57.030 45.000 0.00 0.00 38.64 3.85
2415 4695 1.476488 GCTGTTTGGGTCTGTGTTTGT 59.524 47.619 0.00 0.00 0.00 2.83
2416 4696 2.094234 GCTGTTTGGGTCTGTGTTTGTT 60.094 45.455 0.00 0.00 0.00 2.83
2417 4697 3.616317 GCTGTTTGGGTCTGTGTTTGTTT 60.616 43.478 0.00 0.00 0.00 2.83
2419 4699 4.310769 TGTTTGGGTCTGTGTTTGTTTTG 58.689 39.130 0.00 0.00 0.00 2.44
2440 4724 2.494870 GCCAATTGATCTGCCTCTTGTT 59.505 45.455 7.12 0.00 0.00 2.83
2468 4756 3.933332 GTCCTAACCGAAGAATGACTTGG 59.067 47.826 0.00 0.00 39.13 3.61
2472 4760 2.863809 ACCGAAGAATGACTTGGCTTT 58.136 42.857 0.00 0.00 39.13 3.51
2481 4769 9.167311 GAAGAATGACTTGGCTTTTTATAGAGA 57.833 33.333 0.00 0.00 39.13 3.10
2485 4773 7.182817 TGACTTGGCTTTTTATAGAGAGCTA 57.817 36.000 5.87 0.00 35.53 3.32
2487 4775 7.093289 TGACTTGGCTTTTTATAGAGAGCTACT 60.093 37.037 5.87 0.00 35.53 2.57
2489 4777 7.550906 ACTTGGCTTTTTATAGAGAGCTACTTG 59.449 37.037 5.87 0.00 35.53 3.16
2491 4779 7.394816 TGGCTTTTTATAGAGAGCTACTTGTT 58.605 34.615 5.87 0.00 35.53 2.83
2492 4780 7.549488 TGGCTTTTTATAGAGAGCTACTTGTTC 59.451 37.037 5.87 0.00 35.53 3.18
2500 4788 8.770438 ATAGAGAGCTACTTGTTCTTTTTGAG 57.230 34.615 0.00 0.00 36.35 3.02
2582 4876 4.928661 ATTTGTTGTAGCTGACGATGAC 57.071 40.909 0.00 0.00 0.00 3.06
2591 4885 1.258982 GCTGACGATGACATTAAGGCG 59.741 52.381 0.00 0.00 0.00 5.52
2605 4899 5.765182 ACATTAAGGCGGATTATCCTCTTTG 59.235 40.000 17.13 13.80 33.30 2.77
2611 4905 3.134458 CGGATTATCCTCTTTGCTGACC 58.866 50.000 9.78 0.00 33.30 4.02
2613 4907 4.133078 GGATTATCCTCTTTGCTGACCAG 58.867 47.826 3.59 0.00 32.53 4.00
2676 4997 8.893727 GTCTGCTTAGGTAATCAAATGTTATGT 58.106 33.333 0.00 0.00 0.00 2.29
2717 5053 8.271458 TCTGTTGTATCATTGGCTAGGAATTAA 58.729 33.333 0.00 0.00 0.00 1.40
2810 5149 5.938125 TGTACCAATAAGCTGAAGAAAGGTC 59.062 40.000 0.00 0.00 0.00 3.85
2834 5173 2.750237 GCCCCACGACATGTTCCC 60.750 66.667 0.00 0.00 0.00 3.97
2868 5312 9.605275 CATTATAATTCTCAGTCAGGTTCTTGA 57.395 33.333 0.00 0.00 0.00 3.02
2875 5366 7.303182 TCTCAGTCAGGTTCTTGATTCTAAA 57.697 36.000 0.00 0.00 0.00 1.85
2933 5424 8.212259 AGGCATATTATCTCCTTGTTGACTAT 57.788 34.615 0.00 0.00 0.00 2.12
2936 5427 9.664332 GCATATTATCTCCTTGTTGACTATCAT 57.336 33.333 0.00 0.00 0.00 2.45
2942 5433 4.650734 TCCTTGTTGACTATCATGTTGCA 58.349 39.130 0.00 0.00 0.00 4.08
2952 5443 6.127925 TGACTATCATGTTGCACCTGATTTTC 60.128 38.462 9.41 7.56 35.55 2.29
3029 5520 9.937175 GTTGCATTGTTAGGAACTATCTTTATC 57.063 33.333 0.00 0.00 42.38 1.75
3108 5599 8.779354 AACCTTAACATAAGCTCAAGAACTAG 57.221 34.615 0.00 0.00 0.00 2.57
3154 5645 7.631717 ACTAAATAAAGCTTTGTCAGATCCC 57.368 36.000 22.02 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.661112 GCTCAAGAACGCCATGTCTAC 59.339 52.381 0.00 0.00 0.00 2.59
30 31 1.098712 AAAACCGCTCAAGAACGCCA 61.099 50.000 0.00 0.00 0.00 5.69
72 73 2.027929 TCCTCGGGAAACTTTTATCGCA 60.028 45.455 0.00 0.00 0.00 5.10
92 93 2.047179 GCCCCCGTCACAAGACTC 60.047 66.667 0.00 0.00 42.73 3.36
139 140 1.025812 ATCTAGTCCCGTCTCTTGCG 58.974 55.000 0.00 0.00 0.00 4.85
179 180 1.888512 GATATGGGCGCAAATCCATGT 59.111 47.619 21.73 16.77 43.05 3.21
233 234 0.988832 AAGCCTTACGATGGGGTGAA 59.011 50.000 0.00 0.00 33.29 3.18
285 286 3.603532 GAGAGAGTCATGAACAATGGCA 58.396 45.455 0.00 0.00 43.83 4.92
291 292 4.099633 AGATTGGGAGAGAGTCATGAACA 58.900 43.478 0.00 0.00 0.00 3.18
397 398 5.230942 CAGACATGGTTCTTCCGGTATATC 58.769 45.833 0.00 0.00 39.52 1.63
402 403 0.324943 CCAGACATGGTTCTTCCGGT 59.675 55.000 0.00 0.00 42.17 5.28
446 447 0.965363 CGTTGGGTTGCCTTGGCTAT 60.965 55.000 13.18 0.00 0.00 2.97
684 688 1.445716 GGTCCGTGATCCTCGATCGT 61.446 60.000 15.94 0.00 41.51 3.73
735 739 2.829384 TTTCCTGGCCGTCCTTGCT 61.829 57.895 0.00 0.00 0.00 3.91
739 743 2.943978 CGAGTTTCCTGGCCGTCCT 61.944 63.158 0.00 0.00 0.00 3.85
799 803 7.420800 CAAGCTCAATAACAAGACAGTTCTTT 58.579 34.615 0.00 0.00 40.34 2.52
800 804 6.514048 GCAAGCTCAATAACAAGACAGTTCTT 60.514 38.462 0.00 0.00 43.35 2.52
801 805 5.049129 GCAAGCTCAATAACAAGACAGTTCT 60.049 40.000 0.00 0.00 33.07 3.01
802 806 5.149977 GCAAGCTCAATAACAAGACAGTTC 58.850 41.667 0.00 0.00 33.07 3.01
803 807 4.580167 TGCAAGCTCAATAACAAGACAGTT 59.420 37.500 0.00 0.00 35.55 3.16
804 808 4.136796 TGCAAGCTCAATAACAAGACAGT 58.863 39.130 0.00 0.00 0.00 3.55
805 809 4.754372 TGCAAGCTCAATAACAAGACAG 57.246 40.909 0.00 0.00 0.00 3.51
806 810 5.280945 GTTTGCAAGCTCAATAACAAGACA 58.719 37.500 5.98 0.00 0.00 3.41
807 811 4.379793 CGTTTGCAAGCTCAATAACAAGAC 59.620 41.667 11.70 0.00 0.00 3.01
808 812 4.274705 TCGTTTGCAAGCTCAATAACAAGA 59.725 37.500 11.70 0.00 0.00 3.02
809 813 4.536065 TCGTTTGCAAGCTCAATAACAAG 58.464 39.130 11.70 0.00 0.00 3.16
810 814 4.560136 TCGTTTGCAAGCTCAATAACAA 57.440 36.364 11.70 0.00 0.00 2.83
811 815 4.286910 GTTCGTTTGCAAGCTCAATAACA 58.713 39.130 11.70 0.00 0.00 2.41
812 816 3.668656 GGTTCGTTTGCAAGCTCAATAAC 59.331 43.478 11.70 7.50 0.00 1.89
813 817 3.568007 AGGTTCGTTTGCAAGCTCAATAA 59.432 39.130 11.70 0.00 0.00 1.40
814 818 3.058293 CAGGTTCGTTTGCAAGCTCAATA 60.058 43.478 11.70 0.00 28.96 1.90
815 819 1.956477 AGGTTCGTTTGCAAGCTCAAT 59.044 42.857 11.70 0.00 0.00 2.57
816 820 1.065401 CAGGTTCGTTTGCAAGCTCAA 59.935 47.619 11.70 1.40 28.96 3.02
850 854 1.609208 GTATATGGGCTGGCCACAAG 58.391 55.000 26.41 0.00 37.98 3.16
853 857 0.324943 ATCGTATATGGGCTGGCCAC 59.675 55.000 26.41 11.73 37.98 5.01
879 883 6.863019 GCACTGAGCCCATCTCGAATAGAG 62.863 54.167 0.00 0.00 44.86 2.43
899 903 1.153509 GATGGCATTTGGGCTGCAC 60.154 57.895 0.00 0.00 41.47 4.57
917 921 2.290122 CTAGGTCAGGTCAGGCTGCG 62.290 65.000 10.34 0.00 0.00 5.18
919 923 0.975040 AGCTAGGTCAGGTCAGGCTG 60.975 60.000 8.58 8.58 0.00 4.85
1435 3654 0.182061 AGTATCCGGTACTCGCCTGA 59.818 55.000 0.00 0.00 39.46 3.86
1449 3668 2.158842 AGCTTCCCTGTGCATCAGTATC 60.159 50.000 13.06 0.00 42.19 2.24
1459 3678 1.610522 CAGAAAACCAGCTTCCCTGTG 59.389 52.381 0.00 0.00 40.06 3.66
1463 3682 0.827507 TGCCAGAAAACCAGCTTCCC 60.828 55.000 0.00 0.00 0.00 3.97
1468 3687 0.881118 TCGATTGCCAGAAAACCAGC 59.119 50.000 0.00 0.00 0.00 4.85
1469 3688 1.135972 CGTCGATTGCCAGAAAACCAG 60.136 52.381 0.00 0.00 0.00 4.00
1585 3825 1.091771 CAATGCAGGCTACCGTGGAG 61.092 60.000 0.00 0.00 30.81 3.86
1612 3852 2.618053 CTCCAGGTACCGATGTTTGTC 58.382 52.381 6.18 0.00 0.00 3.18
1614 3854 1.553248 TCCTCCAGGTACCGATGTTTG 59.447 52.381 6.18 0.00 36.34 2.93
1617 3857 1.043673 GCTCCTCCAGGTACCGATGT 61.044 60.000 6.18 0.00 36.34 3.06
1621 3861 0.179073 CAATGCTCCTCCAGGTACCG 60.179 60.000 6.18 1.26 36.34 4.02
1633 3873 2.113860 TTGTCTAGGTGCCAATGCTC 57.886 50.000 0.00 0.00 38.71 4.26
1645 3885 5.047943 CCTCCAGGTACCGATATTTGTCTAG 60.048 48.000 6.18 0.00 0.00 2.43
1647 3887 3.641906 CCTCCAGGTACCGATATTTGTCT 59.358 47.826 6.18 0.00 0.00 3.41
1648 3888 3.640029 TCCTCCAGGTACCGATATTTGTC 59.360 47.826 6.18 0.00 36.34 3.18
1649 3889 3.641906 CTCCTCCAGGTACCGATATTTGT 59.358 47.826 6.18 0.00 36.34 2.83
1651 3891 2.633481 GCTCCTCCAGGTACCGATATTT 59.367 50.000 6.18 0.00 36.34 1.40
1653 3893 1.147191 TGCTCCTCCAGGTACCGATAT 59.853 52.381 6.18 0.00 36.34 1.63
1654 3894 0.554305 TGCTCCTCCAGGTACCGATA 59.446 55.000 6.18 0.00 36.34 2.92
1657 3897 0.179073 CAATGCTCCTCCAGGTACCG 60.179 60.000 6.18 1.26 36.34 4.02
1658 3898 0.181350 CCAATGCTCCTCCAGGTACC 59.819 60.000 2.73 2.73 36.34 3.34
1659 3899 0.464554 GCCAATGCTCCTCCAGGTAC 60.465 60.000 0.00 0.00 36.34 3.34
1660 3900 0.913934 TGCCAATGCTCCTCCAGGTA 60.914 55.000 0.00 0.00 38.71 3.08
1661 3901 2.233566 TGCCAATGCTCCTCCAGGT 61.234 57.895 0.00 0.00 38.71 4.00
1662 3902 1.751927 GTGCCAATGCTCCTCCAGG 60.752 63.158 0.00 0.00 38.71 4.45
1663 3903 1.751927 GGTGCCAATGCTCCTCCAG 60.752 63.158 0.00 0.00 45.62 3.86
1664 3904 2.356278 GGTGCCAATGCTCCTCCA 59.644 61.111 0.00 0.00 45.62 3.86
1669 3909 2.627515 TCATCTAGGTGCCAATGCTC 57.372 50.000 0.00 0.00 38.71 4.26
1670 3910 2.440627 TGATCATCTAGGTGCCAATGCT 59.559 45.455 0.00 0.00 38.71 3.79
1671 3911 2.854963 TGATCATCTAGGTGCCAATGC 58.145 47.619 0.00 0.00 38.26 3.56
1672 3912 6.412214 TCATATGATCATCTAGGTGCCAATG 58.588 40.000 12.53 6.46 0.00 2.82
1673 3913 6.631763 TCATATGATCATCTAGGTGCCAAT 57.368 37.500 12.53 0.00 0.00 3.16
1674 3914 5.570236 GCTCATATGATCATCTAGGTGCCAA 60.570 44.000 12.53 0.00 0.00 4.52
1675 3915 4.081254 GCTCATATGATCATCTAGGTGCCA 60.081 45.833 12.53 0.00 0.00 4.92
1676 3916 4.081254 TGCTCATATGATCATCTAGGTGCC 60.081 45.833 12.53 0.00 0.00 5.01
1677 3917 5.082251 TGCTCATATGATCATCTAGGTGC 57.918 43.478 12.53 10.45 0.00 5.01
1678 3918 6.527057 TCTGCTCATATGATCATCTAGGTG 57.473 41.667 12.53 0.00 0.00 4.00
1679 3919 6.351202 GCTTCTGCTCATATGATCATCTAGGT 60.351 42.308 12.53 0.00 36.03 3.08
1680 3920 6.044046 GCTTCTGCTCATATGATCATCTAGG 58.956 44.000 12.53 0.00 36.03 3.02
1681 3921 6.631962 TGCTTCTGCTCATATGATCATCTAG 58.368 40.000 12.53 9.24 40.48 2.43
1682 3922 6.600882 TGCTTCTGCTCATATGATCATCTA 57.399 37.500 12.53 0.00 40.48 1.98
1683 3923 5.485209 TGCTTCTGCTCATATGATCATCT 57.515 39.130 12.53 0.00 40.48 2.90
1684 3924 5.469084 TGTTGCTTCTGCTCATATGATCATC 59.531 40.000 12.53 0.00 40.48 2.92
1685 3925 5.374071 TGTTGCTTCTGCTCATATGATCAT 58.626 37.500 13.81 13.81 40.48 2.45
1686 3926 4.773013 TGTTGCTTCTGCTCATATGATCA 58.227 39.130 5.72 7.50 40.48 2.92
1687 3927 5.943706 ATGTTGCTTCTGCTCATATGATC 57.056 39.130 5.72 2.32 40.48 2.92
1688 3928 7.997773 ATAATGTTGCTTCTGCTCATATGAT 57.002 32.000 5.72 0.00 40.48 2.45
1689 3929 8.152898 ACTATAATGTTGCTTCTGCTCATATGA 58.847 33.333 5.07 5.07 40.48 2.15
1693 3933 7.024340 CAACTATAATGTTGCTTCTGCTCAT 57.976 36.000 0.00 0.00 40.40 2.90
1694 3934 6.426980 CAACTATAATGTTGCTTCTGCTCA 57.573 37.500 0.00 0.00 40.40 4.26
1714 3954 4.304110 TCTGTTCTGGTGTCGAATACAAC 58.696 43.478 0.00 0.00 46.76 3.32
1730 3970 3.009301 TCTTCCGAAACGTCTCTGTTC 57.991 47.619 0.00 0.00 0.00 3.18
1734 3974 3.741344 CACAAATCTTCCGAAACGTCTCT 59.259 43.478 0.00 0.00 0.00 3.10
1752 3992 1.211703 TCAGGAACAACTGGAGCACAA 59.788 47.619 0.00 0.00 38.98 3.33
1774 4014 7.605449 CCATCCATCTCAAACAGTTTATTGTT 58.395 34.615 0.00 0.00 42.82 2.83
1777 4017 5.716228 TGCCATCCATCTCAAACAGTTTATT 59.284 36.000 0.00 0.00 0.00 1.40
1815 4055 1.411501 GGCCCTGGATCATTAAAGCCA 60.412 52.381 0.00 0.00 39.01 4.75
1816 4056 1.332195 GGCCCTGGATCATTAAAGCC 58.668 55.000 0.00 0.00 0.00 4.35
1828 4068 3.762288 CAGATATCAATGATTGGCCCTGG 59.238 47.826 0.00 0.00 0.00 4.45
1871 4117 2.397044 TTTCAAGGCCCAAACCTCAT 57.603 45.000 0.00 0.00 39.93 2.90
1906 4152 4.882427 CACAAGGAGATGATCTGCATTCTT 59.118 41.667 16.35 0.00 37.29 2.52
1907 4153 4.452825 CACAAGGAGATGATCTGCATTCT 58.547 43.478 16.35 0.00 37.29 2.40
1919 4165 2.508526 GACCAAACTGCACAAGGAGAT 58.491 47.619 0.00 0.00 36.58 2.75
1940 4189 4.444056 CCACATTCCAATGTTCGACAAAAC 59.556 41.667 2.01 0.00 46.95 2.43
1941 4190 4.615949 CCACATTCCAATGTTCGACAAAA 58.384 39.130 2.01 0.00 46.95 2.44
1951 4200 1.429021 CGACCGCCACATTCCAATG 59.571 57.895 0.00 0.00 42.10 2.82
2016 4265 6.543465 TGCCATTGATATCAAACTGAAGTAGG 59.457 38.462 21.50 12.42 39.55 3.18
2034 4283 3.181477 TGAAACAGACCAACTTGCCATTG 60.181 43.478 0.00 0.00 0.00 2.82
2050 4299 3.250762 CAGAGTCCTTTGCGATTGAAACA 59.749 43.478 0.00 0.00 0.00 2.83
2056 4308 3.070018 CAAGACAGAGTCCTTTGCGATT 58.930 45.455 0.00 0.00 32.18 3.34
2067 4319 2.611473 CCGATGTTGAGCAAGACAGAGT 60.611 50.000 0.00 0.00 0.00 3.24
2136 4388 1.334869 GGCCAAGCGTTCATGGAATAG 59.665 52.381 0.00 0.00 39.12 1.73
2143 4395 1.474077 GATGAAAGGCCAAGCGTTCAT 59.526 47.619 5.01 11.56 42.45 2.57
2206 4480 3.474798 TCACCTCAGAAGGATACAGGT 57.525 47.619 0.00 0.00 46.67 4.00
2207 4481 4.826274 TTTCACCTCAGAAGGATACAGG 57.174 45.455 0.00 0.00 46.67 4.00
2218 4492 8.681486 TCCAATTCATACATATTTCACCTCAG 57.319 34.615 0.00 0.00 0.00 3.35
2223 4497 9.071276 AGTGGATCCAATTCATACATATTTCAC 57.929 33.333 18.20 0.00 0.00 3.18
2270 4544 9.791820 CTTGATCATAACTTTGCATACATCAAA 57.208 29.630 0.00 0.00 29.70 2.69
2345 4625 1.659794 CCACTTCAGCCCAAAACGG 59.340 57.895 0.00 0.00 0.00 4.44
2394 4674 1.476085 CAAACACAGACCCAAACAGCA 59.524 47.619 0.00 0.00 0.00 4.41
2395 4675 1.476488 ACAAACACAGACCCAAACAGC 59.524 47.619 0.00 0.00 0.00 4.40
2398 4678 3.124466 GCAAAACAAACACAGACCCAAAC 59.876 43.478 0.00 0.00 0.00 2.93
2406 4686 5.524646 AGATCAATTGGCAAAACAAACACAG 59.475 36.000 3.01 0.00 33.48 3.66
2407 4687 5.293814 CAGATCAATTGGCAAAACAAACACA 59.706 36.000 3.01 0.00 33.48 3.72
2415 4695 3.167485 AGAGGCAGATCAATTGGCAAAA 58.833 40.909 3.01 0.00 42.98 2.44
2416 4696 2.811410 AGAGGCAGATCAATTGGCAAA 58.189 42.857 3.01 0.00 42.98 3.68
2417 4697 2.494471 CAAGAGGCAGATCAATTGGCAA 59.506 45.455 0.68 0.68 42.98 4.52
2419 4699 2.097825 ACAAGAGGCAGATCAATTGGC 58.902 47.619 5.42 0.43 41.05 4.52
2446 4733 3.933332 CCAAGTCATTCTTCGGTTAGGAC 59.067 47.826 0.00 0.00 33.63 3.85
2448 4735 2.678336 GCCAAGTCATTCTTCGGTTAGG 59.322 50.000 0.00 0.00 33.63 2.69
2449 4736 3.600388 AGCCAAGTCATTCTTCGGTTAG 58.400 45.455 0.00 0.00 33.63 2.34
2454 4741 7.974675 TCTATAAAAAGCCAAGTCATTCTTCG 58.025 34.615 0.00 0.00 33.63 3.79
2468 4756 8.710835 AGAACAAGTAGCTCTCTATAAAAAGC 57.289 34.615 0.00 0.00 34.95 3.51
2545 4833 9.191995 CTACAACAAATATTGGAACCAAGAAAC 57.808 33.333 11.88 0.00 39.47 2.78
2546 4834 7.870445 GCTACAACAAATATTGGAACCAAGAAA 59.130 33.333 11.88 1.32 39.47 2.52
2547 4835 7.232534 AGCTACAACAAATATTGGAACCAAGAA 59.767 33.333 11.88 3.60 39.47 2.52
2548 4836 6.719370 AGCTACAACAAATATTGGAACCAAGA 59.281 34.615 11.88 7.83 39.47 3.02
2549 4837 6.808212 CAGCTACAACAAATATTGGAACCAAG 59.192 38.462 11.88 1.08 39.47 3.61
2550 4838 6.491745 TCAGCTACAACAAATATTGGAACCAA 59.508 34.615 8.75 8.75 40.47 3.67
2555 4849 5.483811 TCGTCAGCTACAACAAATATTGGA 58.516 37.500 0.00 0.00 33.63 3.53
2582 4876 5.335191 GCAAAGAGGATAATCCGCCTTAATG 60.335 44.000 0.00 0.00 42.75 1.90
2591 4885 4.133078 CTGGTCAGCAAAGAGGATAATCC 58.867 47.826 0.00 0.00 36.58 3.01
2611 4905 5.934625 ACTAGAAATAAGGTGTGACTTGCTG 59.065 40.000 0.00 0.00 32.02 4.41
2613 4907 5.932303 TGACTAGAAATAAGGTGTGACTTGC 59.068 40.000 0.00 0.00 32.02 4.01
2618 4912 7.103641 GGTTCATGACTAGAAATAAGGTGTGA 58.896 38.462 0.00 0.00 0.00 3.58
2676 4997 9.878667 TGATACAACAGAAAGACGGAATTATAA 57.121 29.630 0.00 0.00 0.00 0.98
2685 5006 4.393062 AGCCAATGATACAACAGAAAGACG 59.607 41.667 0.00 0.00 0.00 4.18
2717 5053 4.039124 CAGTTCCTTTAAATGGTTGGCAGT 59.961 41.667 0.00 0.00 29.47 4.40
2783 5122 6.655003 CCTTTCTTCAGCTTATTGGTACAGAA 59.345 38.462 0.00 0.00 42.39 3.02
2784 5123 6.173339 CCTTTCTTCAGCTTATTGGTACAGA 58.827 40.000 0.00 0.00 42.39 3.41
2810 5149 2.959484 ATGTCGTGGGGCCTGACAG 61.959 63.158 23.63 0.00 44.94 3.51
2879 5370 9.998106 ATTTCATAGTCAGTTACAAGTACAAGT 57.002 29.630 0.00 0.00 0.00 3.16
2936 5427 3.808726 GCATTTGAAAATCAGGTGCAACA 59.191 39.130 3.64 0.00 39.98 3.33
2942 5433 4.529377 ACCAGATGCATTTGAAAATCAGGT 59.471 37.500 18.32 4.95 34.98 4.00
2952 5443 6.698008 TGAATACCTAACCAGATGCATTTG 57.302 37.500 10.22 10.22 0.00 2.32
2996 5487 5.827797 AGTTCCTAACAATGCAACAGAAAGA 59.172 36.000 0.00 0.00 0.00 2.52
3038 5529 9.057089 CAATCCCTTTAAATGGTTAGTAGCTAG 57.943 37.037 9.09 0.00 0.00 3.42
3044 5535 6.897413 AGCATCAATCCCTTTAAATGGTTAGT 59.103 34.615 9.09 0.00 0.00 2.24
3131 5622 7.475840 GTGGGATCTGACAAAGCTTTATTTAG 58.524 38.462 12.25 8.24 0.00 1.85
3132 5623 6.093495 CGTGGGATCTGACAAAGCTTTATTTA 59.907 38.462 12.25 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.