Multiple sequence alignment - TraesCS3B01G507400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G507400 chr3B 100.000 3364 0 0 1 3364 751016149 751012786 0.000000e+00 6213.0
1 TraesCS3B01G507400 chr3B 79.277 415 81 5 1892 2304 750901067 750900656 5.490000e-73 285.0
2 TraesCS3B01G507400 chr3B 80.418 383 44 14 902 1253 751842880 751843262 2.570000e-66 263.0
3 TraesCS3B01G507400 chr3B 89.894 188 17 2 1165 1351 751511284 751511098 1.210000e-59 241.0
4 TraesCS3B01G507400 chr3B 88.060 67 7 1 3239 3304 555153074 555153140 1.000000e-10 78.7
5 TraesCS3B01G507400 chr3D 95.308 2387 86 9 247 2616 563597083 563594706 0.000000e+00 3764.0
6 TraesCS3B01G507400 chr3D 95.706 815 30 3 2552 3364 563594705 563593894 0.000000e+00 1306.0
7 TraesCS3B01G507400 chr3D 81.643 1193 155 45 1778 2927 563446569 563445398 0.000000e+00 931.0
8 TraesCS3B01G507400 chr3D 87.832 452 44 10 913 1362 563447438 563446996 1.380000e-143 520.0
9 TraesCS3B01G507400 chr3D 89.865 296 30 0 1310 1605 563447000 563446705 6.810000e-102 381.0
10 TraesCS3B01G507400 chr3D 82.075 424 51 17 2929 3348 563445319 563444917 4.160000e-89 339.0
11 TraesCS3B01G507400 chr3D 80.128 468 65 15 2384 2845 563434511 563434066 1.160000e-84 324.0
12 TraesCS3B01G507400 chr3D 89.593 221 23 0 1133 1353 563435829 563435609 7.110000e-72 281.0
13 TraesCS3B01G507400 chr3D 91.626 203 16 1 1 203 563597286 563597085 2.560000e-71 279.0
14 TraesCS3B01G507400 chr3D 77.801 482 76 20 1081 1533 577028942 577029421 5.530000e-68 268.0
15 TraesCS3B01G507400 chr3D 87.050 139 17 1 2372 2509 563433856 563433718 4.490000e-34 156.0
16 TraesCS3B01G507400 chr3D 87.619 105 11 2 2372 2475 563432832 563432729 1.640000e-23 121.0
17 TraesCS3B01G507400 chr3A 92.660 2357 123 19 1 2338 698169896 698167571 0.000000e+00 3349.0
18 TraesCS3B01G507400 chr3A 94.600 1037 45 8 2334 3364 698167492 698166461 0.000000e+00 1594.0
19 TraesCS3B01G507400 chr3A 88.470 451 43 4 913 1362 698146645 698146203 1.370000e-148 536.0
20 TraesCS3B01G507400 chr3A 89.189 296 32 0 1310 1605 698146207 698145912 1.470000e-98 370.0
21 TraesCS3B01G507400 chr3A 92.019 213 17 0 1133 1345 698032330 698032118 1.960000e-77 300.0
22 TraesCS3B01G507400 chr3A 79.032 372 47 17 2374 2727 698030264 698029906 3.380000e-55 226.0
23 TraesCS3B01G507400 chr3A 83.803 142 18 3 2373 2509 698029859 698029718 2.720000e-26 130.0
24 TraesCS3B01G507400 chr3A 88.060 67 7 1 3239 3304 691599565 691599631 1.000000e-10 78.7
25 TraesCS3B01G507400 chr6B 81.648 267 37 8 1095 1351 704550539 704550275 9.460000e-51 211.0
26 TraesCS3B01G507400 chr6B 88.060 67 7 1 3239 3304 21122264 21122330 1.000000e-10 78.7
27 TraesCS3B01G507400 chr6A 72.938 388 79 14 1161 1532 115504994 115504617 9.870000e-21 111.0
28 TraesCS3B01G507400 chr7B 88.060 67 7 1 3239 3304 728283949 728284015 1.000000e-10 78.7
29 TraesCS3B01G507400 chr5B 88.060 67 7 1 3239 3304 37112946 37113012 1.000000e-10 78.7
30 TraesCS3B01G507400 chr2B 94.231 52 2 1 3254 3304 784304972 784304921 1.000000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G507400 chr3B 751012786 751016149 3363 True 6213.000000 6213 100.000000 1 3364 1 chr3B.!!$R2 3363
1 TraesCS3B01G507400 chr3D 563593894 563597286 3392 True 1783.000000 3764 94.213333 1 3364 3 chr3D.!!$R3 3363
2 TraesCS3B01G507400 chr3D 563444917 563447438 2521 True 542.750000 931 85.353750 913 3348 4 chr3D.!!$R2 2435
3 TraesCS3B01G507400 chr3D 563432729 563435829 3100 True 220.500000 324 86.097500 1133 2845 4 chr3D.!!$R1 1712
4 TraesCS3B01G507400 chr3A 698166461 698169896 3435 True 2471.500000 3349 93.630000 1 3364 2 chr3A.!!$R3 3363
5 TraesCS3B01G507400 chr3A 698145912 698146645 733 True 453.000000 536 88.829500 913 1605 2 chr3A.!!$R2 692
6 TraesCS3B01G507400 chr3A 698029718 698032330 2612 True 218.666667 300 84.951333 1133 2727 3 chr3A.!!$R1 1594


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 679 0.376152 CAGCAAGACAATAGCGCCAG 59.624 55.0 2.29 0.0 0.0 4.85 F
817 824 0.468226 GGTTCACAGTCCAGTCCACA 59.532 55.0 0.00 0.0 0.0 4.17 F
2198 3116 0.937304 GAAGCTGCACGAGTTGTTCA 59.063 50.0 1.02 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 2764 0.244994 CGGCCATAGGAAGATCCTCG 59.755 60.0 2.24 0.0 45.66 4.63 R
2284 3202 1.524008 AAAGTTAGTTGGCGCCCTGC 61.524 55.0 26.77 14.1 45.38 4.85 R
3252 5565 0.318614 GCAACACAAACACCGGGATG 60.319 55.0 6.32 0.0 0.00 3.51 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 7.688578 GTGAAAAACTTTCTATAGTGACGCATC 59.311 37.037 0.00 0.00 0.00 3.91
74 75 4.038402 AGTGACGCATCTCATGATCATGTA 59.962 41.667 30.01 21.28 39.72 2.29
146 147 2.229302 CCTACTCCAGCCTATCGTAAGC 59.771 54.545 0.00 0.00 37.18 3.09
169 170 5.334414 GCCTTCATCATATTAAGCTTCACCG 60.334 44.000 0.00 0.00 0.00 4.94
172 173 5.308014 TCATCATATTAAGCTTCACCGCAT 58.692 37.500 0.00 0.00 0.00 4.73
179 180 9.494479 CATATTAAGCTTCACCGCATATAAATG 57.506 33.333 0.00 0.00 36.09 2.32
187 188 7.044052 GCTTCACCGCATATAAATGTTTCTTTC 60.044 37.037 0.00 0.00 35.38 2.62
189 190 7.693952 TCACCGCATATAAATGTTTCTTTCTC 58.306 34.615 0.00 0.00 35.38 2.87
211 212 8.969260 TCTCTTCCTCTTACGTATAACATGTA 57.031 34.615 0.00 0.00 0.00 2.29
212 213 9.053840 TCTCTTCCTCTTACGTATAACATGTAG 57.946 37.037 0.00 0.00 30.29 2.74
214 215 9.053840 TCTTCCTCTTACGTATAACATGTAGAG 57.946 37.037 0.00 4.89 30.29 2.43
241 242 1.478631 TGCAACCAACACATTGTCCA 58.521 45.000 0.00 0.00 33.60 4.02
275 276 1.407618 GGGGACGAAAGCACTTTGTTT 59.592 47.619 0.00 0.00 32.11 2.83
322 326 0.468029 CTTCAACCTGTTGGCCACCT 60.468 55.000 3.88 0.00 40.78 4.00
331 335 2.132996 TTGGCCACCTTGGTTGCAG 61.133 57.895 3.88 0.00 40.46 4.41
332 336 2.203480 GGCCACCTTGGTTGCAGA 60.203 61.111 16.07 0.00 40.46 4.26
336 340 0.670162 CCACCTTGGTTGCAGACTTG 59.330 55.000 0.00 0.00 31.35 3.16
337 341 1.679139 CACCTTGGTTGCAGACTTGA 58.321 50.000 0.00 0.00 0.00 3.02
353 359 6.018507 GCAGACTTGAAAAACATTGCAAAGAT 60.019 34.615 8.96 0.00 0.00 2.40
354 360 7.561556 CAGACTTGAAAAACATTGCAAAGATC 58.438 34.615 8.96 2.26 0.00 2.75
355 361 6.418819 AGACTTGAAAAACATTGCAAAGATCG 59.581 34.615 8.96 0.00 0.00 3.69
364 370 4.449068 ACATTGCAAAGATCGATCGGTATC 59.551 41.667 19.33 11.82 0.00 2.24
379 385 5.984233 TCGGTATCAATTGTAACATCAGC 57.016 39.130 5.13 0.00 0.00 4.26
380 386 5.670485 TCGGTATCAATTGTAACATCAGCT 58.330 37.500 5.13 0.00 0.00 4.24
381 387 5.753438 TCGGTATCAATTGTAACATCAGCTC 59.247 40.000 5.13 0.00 0.00 4.09
388 394 0.824759 GTAACATCAGCTCCTCCGGT 59.175 55.000 0.00 0.00 0.00 5.28
412 418 2.646930 TGGGATCATCACAATCACAGC 58.353 47.619 0.00 0.00 31.67 4.40
419 425 3.128068 TCATCACAATCACAGCAGCATTC 59.872 43.478 0.00 0.00 0.00 2.67
486 492 2.422597 CCGCAGACCTCATGTTTTACA 58.577 47.619 0.00 0.00 0.00 2.41
564 570 1.066215 GTTGGCCCCATTTCACCATTC 60.066 52.381 0.00 0.00 30.85 2.67
566 572 0.970427 GGCCCCATTTCACCATTCGT 60.970 55.000 0.00 0.00 0.00 3.85
575 581 2.665649 TCACCATTCGTAACAGCGAT 57.334 45.000 0.00 0.00 40.76 4.58
584 590 5.351233 TTCGTAACAGCGATGTTTCAATT 57.649 34.783 25.51 0.81 40.76 2.32
623 629 2.417719 GTCGTGAGCTTGGAGTTCATT 58.582 47.619 0.00 0.00 37.76 2.57
630 636 1.438651 CTTGGAGTTCATTTCGCCGA 58.561 50.000 0.00 0.00 0.00 5.54
653 659 4.877378 AAACCGCCAGTCCGATATTATA 57.123 40.909 0.00 0.00 0.00 0.98
661 667 5.566826 GCCAGTCCGATATTATACAGCAAGA 60.567 44.000 0.00 0.00 0.00 3.02
664 670 6.923508 CAGTCCGATATTATACAGCAAGACAA 59.076 38.462 0.00 0.00 0.00 3.18
673 679 0.376152 CAGCAAGACAATAGCGCCAG 59.624 55.000 2.29 0.00 0.00 4.85
776 783 9.772973 AATGGTAAGTTATGTTTTTCCTTTTCC 57.227 29.630 0.00 0.00 0.00 3.13
817 824 0.468226 GGTTCACAGTCCAGTCCACA 59.532 55.000 0.00 0.00 0.00 4.17
818 825 1.583054 GTTCACAGTCCAGTCCACAC 58.417 55.000 0.00 0.00 0.00 3.82
819 826 1.139058 GTTCACAGTCCAGTCCACACT 59.861 52.381 0.00 0.00 0.00 3.55
820 827 2.364324 GTTCACAGTCCAGTCCACACTA 59.636 50.000 0.00 0.00 0.00 2.74
924 931 4.623932 TTATCCACTCTGCTTGTGTTCT 57.376 40.909 0.00 0.00 33.92 3.01
939 946 3.578282 TGTGTTCTTCTGCTGATCTGGTA 59.422 43.478 1.46 0.00 0.00 3.25
1001 1008 2.780643 CATTCACGCTGCTCACCG 59.219 61.111 0.00 0.00 0.00 4.94
1004 1011 4.700365 TCACGCTGCTCACCGACG 62.700 66.667 0.00 0.00 0.00 5.12
1018 1025 4.675510 TCACCGACGAATTTGTACTATCC 58.324 43.478 0.00 0.00 0.00 2.59
1180 1211 4.021925 GCAGGCTGGTCGGACCTT 62.022 66.667 26.41 8.25 39.58 3.50
1515 1618 1.202582 CGTCTTCAATCCTCTCACCGT 59.797 52.381 0.00 0.00 0.00 4.83
1622 1728 1.227645 ACGCTCAACTTGCTCTGCA 60.228 52.632 0.00 0.00 36.47 4.41
1846 2764 5.163426 TGTCCATCCATCAATGTTTTATGCC 60.163 40.000 0.00 0.00 0.00 4.40
1941 2859 1.094073 ATCGTCATCAAGCTGCAGCC 61.094 55.000 34.39 16.40 43.38 4.85
2198 3116 0.937304 GAAGCTGCACGAGTTGTTCA 59.063 50.000 1.02 0.00 0.00 3.18
2233 3151 1.851304 GCCCTTTCACCATCATCCAA 58.149 50.000 0.00 0.00 0.00 3.53
2250 3168 2.828520 TCCAACTTCTCTCCAGCTACAG 59.171 50.000 0.00 0.00 0.00 2.74
2270 3188 1.696063 CATCAATGCCCGGGATTCTT 58.304 50.000 29.31 8.17 0.00 2.52
2284 3202 2.866762 GGATTCTTAACTGCCGCTACAG 59.133 50.000 1.62 1.62 43.59 2.74
2322 3240 4.996758 ACTTTTGGCTATGAAATGGTTTGC 59.003 37.500 0.00 0.00 0.00 3.68
2329 3247 5.482006 GCTATGAAATGGTTTGCCTTTCTT 58.518 37.500 0.00 0.00 35.19 2.52
2352 4032 8.426489 TCTTTCTAGTACCTTGCTAAGAAACAA 58.574 33.333 0.00 0.00 0.00 2.83
2363 4043 7.391148 TTGCTAAGAAACAAACTTGACTCTT 57.609 32.000 12.26 12.26 36.91 2.85
2391 4081 2.240160 TGTGGAACTACTGTTTGTGGGT 59.760 45.455 0.00 0.00 38.04 4.51
2448 4139 4.637534 TCTGTTTTGCCTGATGCTATCTTC 59.362 41.667 0.00 0.00 42.00 2.87
2512 4393 4.585364 CAGTCTGATGCTAGCAAATTTCG 58.415 43.478 23.54 10.79 0.00 3.46
2589 4538 3.797039 TGTGTCTCTCTGTTGTTTCCAG 58.203 45.455 0.00 0.00 0.00 3.86
2594 4543 6.809196 GTGTCTCTCTGTTGTTTCCAGTATAG 59.191 42.308 0.00 0.00 0.00 1.31
2668 4655 2.574006 TCTGGCTCTGCAATTGAACT 57.426 45.000 10.34 0.00 0.00 3.01
2987 5178 3.136443 TGCAGGGGTGGAGTAATATCAAG 59.864 47.826 0.00 0.00 0.00 3.02
2994 5185 6.069963 GGGGTGGAGTAATATCAAGCTCATAT 60.070 42.308 0.00 0.00 0.00 1.78
3166 5477 7.867305 TCATGCAATTTGAATATTGGCAATT 57.133 28.000 19.21 1.18 36.30 2.32
3196 5508 3.182572 GCAACTTCACTCTTACTCGTGTG 59.817 47.826 0.00 0.00 33.07 3.82
3252 5565 9.284968 TGCCATAGTAGATTTTAGATTTAAGCC 57.715 33.333 0.00 0.00 0.00 4.35
3257 5570 8.926092 AGTAGATTTTAGATTTAAGCCATCCC 57.074 34.615 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.884187 TGCGTCACTATAGAAAGTTTTTCAC 58.116 36.000 6.78 0.00 0.00 3.18
36 37 7.602644 AGATGCGTCACTATAGAAAGTTTTTCA 59.397 33.333 8.99 0.00 0.00 2.69
38 39 7.602644 TGAGATGCGTCACTATAGAAAGTTTTT 59.397 33.333 8.99 0.00 0.00 1.94
46 47 5.707298 TGATCATGAGATGCGTCACTATAGA 59.293 40.000 8.99 0.00 33.72 1.98
49 50 4.861102 TGATCATGAGATGCGTCACTAT 57.139 40.909 8.99 0.00 33.72 2.12
61 62 7.148289 GCCTATGTGGATTTACATGATCATGAG 60.148 40.741 36.37 20.08 41.18 2.90
74 75 2.094234 GGTTTTGCGCCTATGTGGATTT 60.094 45.455 4.18 0.00 38.35 2.17
127 128 2.236766 GGCTTACGATAGGCTGGAGTA 58.763 52.381 0.00 0.00 43.77 2.59
146 147 5.334414 GCGGTGAAGCTTAATATGATGAAGG 60.334 44.000 0.00 0.00 0.00 3.46
169 170 9.943163 GAGGAAGAGAAAGAAACATTTATATGC 57.057 33.333 0.00 0.00 35.03 3.14
179 180 9.852091 TTATACGTAAGAGGAAGAGAAAGAAAC 57.148 33.333 0.00 0.00 43.62 2.78
187 188 9.053840 TCTACATGTTATACGTAAGAGGAAGAG 57.946 37.037 2.30 0.00 43.62 2.85
189 190 9.053840 TCTCTACATGTTATACGTAAGAGGAAG 57.946 37.037 2.30 0.00 43.62 3.46
211 212 4.256920 GTGTTGGTTGCATATGAGTCTCT 58.743 43.478 6.97 0.00 0.00 3.10
212 213 4.002982 TGTGTTGGTTGCATATGAGTCTC 58.997 43.478 6.97 0.00 0.00 3.36
214 215 4.970662 ATGTGTTGGTTGCATATGAGTC 57.029 40.909 6.97 0.00 0.00 3.36
275 276 2.121538 CCGGTGCTCATCTCGGAGA 61.122 63.158 10.62 10.62 44.69 3.71
312 313 2.367868 CTGCAACCAAGGTGGCCAAC 62.368 60.000 14.82 14.82 44.07 3.77
322 326 4.527509 TGTTTTTCAAGTCTGCAACCAA 57.472 36.364 0.00 0.00 0.00 3.67
331 335 6.417635 TCGATCTTTGCAATGTTTTTCAAGTC 59.582 34.615 11.67 0.00 0.00 3.01
332 336 6.272318 TCGATCTTTGCAATGTTTTTCAAGT 58.728 32.000 11.67 0.00 0.00 3.16
336 340 5.003778 CCGATCGATCTTTGCAATGTTTTTC 59.996 40.000 22.43 5.22 0.00 2.29
337 341 4.858692 CCGATCGATCTTTGCAATGTTTTT 59.141 37.500 22.43 0.00 0.00 1.94
353 359 6.508777 TGATGTTACAATTGATACCGATCGA 58.491 36.000 18.66 0.00 34.49 3.59
354 360 6.616471 GCTGATGTTACAATTGATACCGATCG 60.616 42.308 13.59 8.51 34.49 3.69
355 361 6.425114 AGCTGATGTTACAATTGATACCGATC 59.575 38.462 13.59 9.44 0.00 3.69
364 370 3.310774 CGGAGGAGCTGATGTTACAATTG 59.689 47.826 3.24 3.24 0.00 2.32
388 394 4.405548 TGTGATTGTGATGATCCCAAACA 58.594 39.130 0.00 0.00 0.00 2.83
412 418 3.438087 ACTCCGACATCTTTTGAATGCTG 59.562 43.478 0.00 0.00 0.00 4.41
419 425 2.666619 GCAGCAACTCCGACATCTTTTG 60.667 50.000 0.00 0.00 0.00 2.44
540 546 0.321346 GTGAAATGGGGCCAACCAAG 59.679 55.000 4.39 0.00 45.13 3.61
564 570 4.553429 GGAAATTGAAACATCGCTGTTACG 59.447 41.667 4.87 0.00 44.83 3.18
566 572 5.471797 TGAGGAAATTGAAACATCGCTGTTA 59.528 36.000 4.87 0.00 44.83 2.41
575 581 4.311606 TCGTCGATGAGGAAATTGAAACA 58.688 39.130 2.39 0.00 0.00 2.83
584 590 0.591659 CGGCTATCGTCGATGAGGAA 59.408 55.000 17.98 0.54 41.73 3.36
630 636 2.413310 ATATCGGACTGGCGGTTTTT 57.587 45.000 0.00 0.00 0.00 1.94
653 659 0.321564 TGGCGCTATTGTCTTGCTGT 60.322 50.000 7.64 0.00 0.00 4.40
661 667 1.595382 GATCGGCTGGCGCTATTGT 60.595 57.895 19.55 0.22 36.09 2.71
664 670 2.513026 GATGGATCGGCTGGCGCTAT 62.513 60.000 19.55 8.19 36.09 2.97
673 679 0.464373 TTTGCCTCTGATGGATCGGC 60.464 55.000 0.00 0.00 41.06 5.54
776 783 4.501071 CATGCCCAATCTCCTTCAAAAAG 58.499 43.478 0.00 0.00 0.00 2.27
817 824 4.347583 AGTGCCGAGTAGGTAGAGTATAGT 59.652 45.833 0.00 0.00 43.70 2.12
818 825 4.691685 CAGTGCCGAGTAGGTAGAGTATAG 59.308 50.000 0.00 0.00 43.70 1.31
819 826 4.504514 CCAGTGCCGAGTAGGTAGAGTATA 60.505 50.000 0.00 0.00 43.70 1.47
820 827 3.478509 CAGTGCCGAGTAGGTAGAGTAT 58.521 50.000 0.00 0.00 43.70 2.12
924 931 3.701205 TTGCTTACCAGATCAGCAGAA 57.299 42.857 5.01 0.00 44.21 3.02
939 946 2.035632 CGAGTAGAGGAGGGATTGCTT 58.964 52.381 0.00 0.00 0.00 3.91
1001 1008 9.477484 ACTAATCATGGATAGTACAAATTCGTC 57.523 33.333 8.90 0.00 0.00 4.20
1018 1025 6.540189 CCTGAACTGAACCCTAACTAATCATG 59.460 42.308 0.00 0.00 0.00 3.07
1515 1618 3.060020 GCGAACCGGATCAGGACGA 62.060 63.158 27.21 0.00 37.02 4.20
1622 1728 5.298347 CGAGTAACTTTTGGAAGGAGAGTT 58.702 41.667 0.00 0.00 37.19 3.01
1846 2764 0.244994 CGGCCATAGGAAGATCCTCG 59.755 60.000 2.24 0.00 45.66 4.63
1859 2777 3.361977 GTTTGCGTGTCCGGCCAT 61.362 61.111 2.24 0.00 33.68 4.40
1941 2859 3.624326 TCTTGAAAACCTTGACGCATG 57.376 42.857 0.00 0.00 0.00 4.06
2233 3151 1.930251 TGCTGTAGCTGGAGAGAAGT 58.070 50.000 5.38 0.00 42.66 3.01
2284 3202 1.524008 AAAGTTAGTTGGCGCCCTGC 61.524 55.000 26.77 14.10 45.38 4.85
2322 3240 7.612677 TCTTAGCAAGGTACTAGAAAGAAAGG 58.387 38.462 0.00 0.00 38.49 3.11
2329 3247 8.208903 AGTTTGTTTCTTAGCAAGGTACTAGAA 58.791 33.333 0.00 0.00 38.49 2.10
2352 4032 6.681729 TCCACATAACCTAAGAGTCAAGTT 57.318 37.500 0.00 0.00 0.00 2.66
2363 4043 6.932400 CACAAACAGTAGTTCCACATAACCTA 59.068 38.462 0.00 0.00 36.84 3.08
2391 4081 8.108378 TGGGTTCATATCAGGTCCTAATTAAA 57.892 34.615 0.00 0.00 0.00 1.52
2448 4139 5.239306 TGGAAGAACAAGTGCAAATAGACAG 59.761 40.000 0.00 0.00 0.00 3.51
2535 4419 1.999648 TCAGTTGCAGGGCTGAATTT 58.000 45.000 13.06 0.00 38.61 1.82
2668 4655 6.121776 ACCAGGTATGATAACTGTTCAACA 57.878 37.500 15.74 0.00 41.94 3.33
2802 4817 7.587258 TGAATCTACAGAATCCCTCTAGAAGA 58.413 38.462 0.00 0.00 28.41 2.87
2987 5178 8.123639 TCCAGGAGTATTTAGTACATATGAGC 57.876 38.462 10.38 1.41 35.67 4.26
3113 5424 1.102978 GTCCAATTAGGCCAATGCGT 58.897 50.000 5.01 0.00 38.85 5.24
3114 5425 0.385390 GGTCCAATTAGGCCAATGCG 59.615 55.000 5.01 0.00 38.85 4.73
3166 5477 2.368439 AGAGTGAAGTTGCAACAGCAA 58.632 42.857 30.11 10.87 45.36 3.91
3243 5556 2.052782 ACACCGGGATGGCTTAAATC 57.947 50.000 6.32 0.00 43.94 2.17
3246 5559 1.202952 ACAAACACCGGGATGGCTTAA 60.203 47.619 6.32 0.00 43.94 1.85
3252 5565 0.318614 GCAACACAAACACCGGGATG 60.319 55.000 6.32 0.00 0.00 3.51
3257 5570 2.490328 ATCAAGCAACACAAACACCG 57.510 45.000 0.00 0.00 0.00 4.94



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.