Multiple sequence alignment - TraesCS3B01G507100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G507100 chr3B 100.000 4888 0 0 1 4888 750859852 750864739 0.000000e+00 9027.0
1 TraesCS3B01G507100 chr3B 83.594 768 116 6 171 936 802311472 802310713 0.000000e+00 712.0
2 TraesCS3B01G507100 chr3B 76.907 970 122 40 15 936 801293822 801292907 1.600000e-124 457.0
3 TraesCS3B01G507100 chr3B 78.309 544 86 14 169 688 560112426 560112961 6.100000e-84 322.0
4 TraesCS3B01G507100 chr3B 83.951 162 18 6 964 1119 750794822 750794981 1.100000e-31 148.0
5 TraesCS3B01G507100 chr3D 86.617 1898 95 80 964 2726 563425031 563426904 0.000000e+00 1951.0
6 TraesCS3B01G507100 chr3D 91.803 793 43 10 2810 3593 563426935 563427714 0.000000e+00 1085.0
7 TraesCS3B01G507100 chr3D 90.110 819 78 3 4071 4888 230725346 230724530 0.000000e+00 1061.0
8 TraesCS3B01G507100 chr3D 83.001 753 116 6 176 927 596697588 596698329 0.000000e+00 671.0
9 TraesCS3B01G507100 chr3D 91.525 295 20 5 4071 4362 230700280 230699988 7.620000e-108 401.0
10 TraesCS3B01G507100 chr3D 87.671 73 8 1 25 97 155554899 155554828 3.140000e-12 84.2
11 TraesCS3B01G507100 chr3A 86.974 1474 98 54 947 2368 698016979 698018410 0.000000e+00 1572.0
12 TraesCS3B01G507100 chr3A 87.054 1290 63 33 2366 3593 698018441 698019688 0.000000e+00 1362.0
13 TraesCS3B01G507100 chr3A 86.795 833 101 5 4063 4888 177114033 177113203 0.000000e+00 920.0
14 TraesCS3B01G507100 chr3A 81.790 972 125 30 9 936 698015964 698016927 0.000000e+00 767.0
15 TraesCS3B01G507100 chr3A 77.540 374 41 15 3589 3922 698019712 698020082 8.350000e-43 185.0
16 TraesCS3B01G507100 chr1A 89.170 831 80 8 4062 4888 588013970 588013146 0.000000e+00 1027.0
17 TraesCS3B01G507100 chr6D 88.138 843 68 15 4060 4888 472232416 472233240 0.000000e+00 974.0
18 TraesCS3B01G507100 chr6D 88.934 497 55 0 4392 4888 291909436 291909932 8.990000e-172 614.0
19 TraesCS3B01G507100 chr6D 82.243 107 19 0 1 107 393927515 393927621 5.210000e-15 93.5
20 TraesCS3B01G507100 chr6D 80.769 104 20 0 4 107 458333105 458333208 1.130000e-11 82.4
21 TraesCS3B01G507100 chr1B 88.121 825 83 6 4065 4888 550372253 550371443 0.000000e+00 966.0
22 TraesCS3B01G507100 chr6B 87.440 828 99 5 4062 4888 224222640 224223463 0.000000e+00 948.0
23 TraesCS3B01G507100 chr6B 85.628 828 65 16 4062 4888 537454202 537453428 0.000000e+00 821.0
24 TraesCS3B01G507100 chr6B 94.960 377 19 0 2866 3242 16925370 16924994 4.210000e-165 592.0
25 TraesCS3B01G507100 chr6B 94.751 381 16 3 2863 3242 49503665 49504042 1.520000e-164 590.0
26 TraesCS3B01G507100 chr6B 84.431 167 22 4 169 331 278343760 278343594 1.410000e-35 161.0
27 TraesCS3B01G507100 chr6B 84.615 104 13 3 6 107 696533077 696533179 3.110000e-17 100.0
28 TraesCS3B01G507100 chr6B 85.106 94 14 0 4 97 601314870 601314777 4.030000e-16 97.1
29 TraesCS3B01G507100 chr5D 87.500 816 97 4 4073 4888 400827873 400827063 0.000000e+00 937.0
30 TraesCS3B01G507100 chr5D 83.588 786 98 18 169 936 466589341 466590113 0.000000e+00 708.0
31 TraesCS3B01G507100 chr5D 82.323 792 105 21 175 936 525740611 525741397 0.000000e+00 654.0
32 TraesCS3B01G507100 chr2D 83.128 895 126 15 48 927 39422490 39423374 0.000000e+00 793.0
33 TraesCS3B01G507100 chr2D 83.553 833 118 14 4062 4888 16591419 16592238 0.000000e+00 761.0
34 TraesCS3B01G507100 chr2D 85.317 504 53 14 1631 2128 139264931 139265419 7.300000e-138 501.0
35 TraesCS3B01G507100 chr4B 85.608 674 80 9 4218 4888 404911235 404910576 0.000000e+00 691.0
36 TraesCS3B01G507100 chr5A 79.979 974 131 20 4 924 436907072 436908034 0.000000e+00 660.0
37 TraesCS3B01G507100 chr2A 82.345 759 117 12 169 914 468501135 468501889 1.150000e-180 643.0
38 TraesCS3B01G507100 chr2A 81.266 774 82 36 1385 2128 161813906 161813166 7.100000e-158 568.0
39 TraesCS3B01G507100 chr6A 95.538 381 14 3 2863 3242 612719455 612719833 1.500000e-169 606.0
40 TraesCS3B01G507100 chr6A 100.000 37 0 0 56 92 486001782 486001746 8.780000e-08 69.4
41 TraesCS3B01G507100 chr5B 81.401 785 109 14 182 936 660194434 660195211 1.500000e-169 606.0
42 TraesCS3B01G507100 chr5B 90.741 54 4 1 38 90 657152308 657152361 2.440000e-08 71.3
43 TraesCS3B01G507100 chr7B 94.737 380 20 0 2863 3242 693269240 693269619 4.210000e-165 592.0
44 TraesCS3B01G507100 chr7B 81.295 139 16 2 15 153 732295209 732295081 2.410000e-18 104.0
45 TraesCS3B01G507100 chr2B 82.199 573 89 9 169 740 602163400 602162840 9.520000e-132 481.0
46 TraesCS3B01G507100 chrUn 74.713 348 40 22 9 319 108408564 108408900 1.440000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G507100 chr3B 750859852 750864739 4887 False 9027.0 9027 100.0000 1 4888 1 chr3B.!!$F3 4887
1 TraesCS3B01G507100 chr3B 802310713 802311472 759 True 712.0 712 83.5940 171 936 1 chr3B.!!$R2 765
2 TraesCS3B01G507100 chr3B 801292907 801293822 915 True 457.0 457 76.9070 15 936 1 chr3B.!!$R1 921
3 TraesCS3B01G507100 chr3B 560112426 560112961 535 False 322.0 322 78.3090 169 688 1 chr3B.!!$F1 519
4 TraesCS3B01G507100 chr3D 563425031 563427714 2683 False 1518.0 1951 89.2100 964 3593 2 chr3D.!!$F2 2629
5 TraesCS3B01G507100 chr3D 230724530 230725346 816 True 1061.0 1061 90.1100 4071 4888 1 chr3D.!!$R3 817
6 TraesCS3B01G507100 chr3D 596697588 596698329 741 False 671.0 671 83.0010 176 927 1 chr3D.!!$F1 751
7 TraesCS3B01G507100 chr3A 698015964 698020082 4118 False 971.5 1572 83.3395 9 3922 4 chr3A.!!$F1 3913
8 TraesCS3B01G507100 chr3A 177113203 177114033 830 True 920.0 920 86.7950 4063 4888 1 chr3A.!!$R1 825
9 TraesCS3B01G507100 chr1A 588013146 588013970 824 True 1027.0 1027 89.1700 4062 4888 1 chr1A.!!$R1 826
10 TraesCS3B01G507100 chr6D 472232416 472233240 824 False 974.0 974 88.1380 4060 4888 1 chr6D.!!$F4 828
11 TraesCS3B01G507100 chr1B 550371443 550372253 810 True 966.0 966 88.1210 4065 4888 1 chr1B.!!$R1 823
12 TraesCS3B01G507100 chr6B 224222640 224223463 823 False 948.0 948 87.4400 4062 4888 1 chr6B.!!$F2 826
13 TraesCS3B01G507100 chr6B 537453428 537454202 774 True 821.0 821 85.6280 4062 4888 1 chr6B.!!$R3 826
14 TraesCS3B01G507100 chr5D 400827063 400827873 810 True 937.0 937 87.5000 4073 4888 1 chr5D.!!$R1 815
15 TraesCS3B01G507100 chr5D 466589341 466590113 772 False 708.0 708 83.5880 169 936 1 chr5D.!!$F1 767
16 TraesCS3B01G507100 chr5D 525740611 525741397 786 False 654.0 654 82.3230 175 936 1 chr5D.!!$F2 761
17 TraesCS3B01G507100 chr2D 39422490 39423374 884 False 793.0 793 83.1280 48 927 1 chr2D.!!$F2 879
18 TraesCS3B01G507100 chr2D 16591419 16592238 819 False 761.0 761 83.5530 4062 4888 1 chr2D.!!$F1 826
19 TraesCS3B01G507100 chr4B 404910576 404911235 659 True 691.0 691 85.6080 4218 4888 1 chr4B.!!$R1 670
20 TraesCS3B01G507100 chr5A 436907072 436908034 962 False 660.0 660 79.9790 4 924 1 chr5A.!!$F1 920
21 TraesCS3B01G507100 chr2A 468501135 468501889 754 False 643.0 643 82.3450 169 914 1 chr2A.!!$F1 745
22 TraesCS3B01G507100 chr2A 161813166 161813906 740 True 568.0 568 81.2660 1385 2128 1 chr2A.!!$R1 743
23 TraesCS3B01G507100 chr5B 660194434 660195211 777 False 606.0 606 81.4010 182 936 1 chr5B.!!$F2 754
24 TraesCS3B01G507100 chr2B 602162840 602163400 560 True 481.0 481 82.1990 169 740 1 chr2B.!!$R1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 631 0.250081 GAGTTGGATCCGATGGAGGC 60.250 60.0 4.57 0.0 34.05 4.70 F
1095 1289 0.108233 GGCAGAGAACAGAGGAGCAG 60.108 60.0 0.00 0.0 0.00 4.24 F
2016 2302 0.179034 GGTCAGCTCACCATCCATCC 60.179 60.0 0.00 0.0 36.32 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2310 2627 0.182299 CCAATCCTTCTCCCTCTGGC 59.818 60.0 0.00 0.00 0.00 4.85 R
2977 3370 0.039074 CAGGTACCTGATCGCCGATC 60.039 60.0 34.54 19.83 46.30 3.69 R
4008 4492 0.036010 CAACTCGTGGAGATGCCCTT 60.036 55.0 0.00 0.00 34.97 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.644399 GACTCAACCGTCCGGGCTC 62.644 68.421 3.66 0.00 40.62 4.70
67 68 1.963338 GCACCGCTCATATCCAGCC 60.963 63.158 0.00 0.00 32.83 4.85
72 73 1.679139 CGCTCATATCCAGCCCAAAA 58.321 50.000 0.00 0.00 32.83 2.44
87 88 2.315176 CCAAAAATGGGGCGGATATGA 58.685 47.619 0.00 0.00 0.00 2.15
94 101 2.048127 GGCGGATATGAGGGCGAC 60.048 66.667 0.00 0.00 0.00 5.19
153 160 2.826003 GGGGTCCCACACGGAAACT 61.826 63.158 10.98 0.00 44.47 2.66
157 174 2.135581 TCCCACACGGAAACTCGGT 61.136 57.895 0.00 0.00 37.88 4.69
211 254 1.377202 GCCGCCAGAGACCAAATCA 60.377 57.895 0.00 0.00 0.00 2.57
222 265 8.632679 GCCAGAGACCAAATCATGATATTTAAA 58.367 33.333 9.04 0.00 0.00 1.52
236 279 2.618442 TTTAAACCGGTCAACGTCCT 57.382 45.000 8.04 0.00 42.24 3.85
362 470 2.561419 ACCTACTACACAATGCTCACGT 59.439 45.455 0.00 0.00 0.00 4.49
507 618 1.719378 AGAGGAGGAAGAGGAGTTGGA 59.281 52.381 0.00 0.00 0.00 3.53
519 631 0.250081 GAGTTGGATCCGATGGAGGC 60.250 60.000 4.57 0.00 34.05 4.70
520 632 0.982852 AGTTGGATCCGATGGAGGCA 60.983 55.000 4.57 0.00 34.05 4.75
531 652 3.791586 GGAGGCAGAGGAGGTGGC 61.792 72.222 0.00 0.00 40.72 5.01
534 655 4.154347 GGCAGAGGAGGTGGCGAG 62.154 72.222 0.00 0.00 0.00 5.03
535 656 3.071206 GCAGAGGAGGTGGCGAGA 61.071 66.667 0.00 0.00 0.00 4.04
536 657 3.074999 GCAGAGGAGGTGGCGAGAG 62.075 68.421 0.00 0.00 0.00 3.20
692 813 2.125106 GCGTTCCTCCGGCAGAAT 60.125 61.111 8.92 0.00 0.00 2.40
843 988 5.191426 TCATAGACGACAAGTAGCTAGGTT 58.809 41.667 0.00 0.00 0.00 3.50
931 1078 8.016301 TGAGATGTCTAGATGCAACTCTTAAT 57.984 34.615 16.54 0.00 36.11 1.40
942 1089 8.680903 AGATGCAACTCTTAATATTTTGTGAGG 58.319 33.333 0.00 0.00 0.00 3.86
944 1091 6.152661 TGCAACTCTTAATATTTTGTGAGGGG 59.847 38.462 0.00 0.00 0.00 4.79
945 1092 6.152831 GCAACTCTTAATATTTTGTGAGGGGT 59.847 38.462 0.00 0.00 0.00 4.95
948 1095 7.643123 ACTCTTAATATTTTGTGAGGGGTCAT 58.357 34.615 0.00 0.00 0.00 3.06
949 1096 7.557719 ACTCTTAATATTTTGTGAGGGGTCATG 59.442 37.037 0.00 0.00 0.00 3.07
950 1097 7.638444 TCTTAATATTTTGTGAGGGGTCATGA 58.362 34.615 0.00 0.00 0.00 3.07
951 1098 7.556275 TCTTAATATTTTGTGAGGGGTCATGAC 59.444 37.037 17.91 17.91 0.00 3.06
962 1150 2.484417 GGGGTCATGACTGTAGATGCTG 60.484 54.545 24.50 0.00 0.00 4.41
999 1187 1.001020 TTGCATGTGCGGAAGGGAT 60.001 52.632 0.01 0.00 45.83 3.85
1001 1189 1.153086 GCATGTGCGGAAGGGATCT 60.153 57.895 0.00 0.00 0.00 2.75
1006 1194 2.159382 TGTGCGGAAGGGATCTTTTTC 58.841 47.619 0.00 0.00 32.52 2.29
1062 1256 1.739929 CACCGCACCGCATTGACTA 60.740 57.895 0.00 0.00 0.00 2.59
1073 1267 0.669318 CATTGACTACACCGCACCGT 60.669 55.000 0.00 0.00 0.00 4.83
1080 1274 4.326766 CACCGCACCGTTTGGCAG 62.327 66.667 0.00 0.00 39.70 4.85
1095 1289 0.108233 GGCAGAGAACAGAGGAGCAG 60.108 60.000 0.00 0.00 0.00 4.24
1112 1306 0.458197 CAGAGCAGAACAGAGGAGCG 60.458 60.000 0.00 0.00 0.00 5.03
1128 1322 2.414179 CGGGCCGCTATACACGAA 59.586 61.111 15.42 0.00 0.00 3.85
1129 1323 1.947642 CGGGCCGCTATACACGAAC 60.948 63.158 15.42 0.00 0.00 3.95
1130 1324 1.142314 GGGCCGCTATACACGAACA 59.858 57.895 0.00 0.00 0.00 3.18
1131 1325 1.149964 GGGCCGCTATACACGAACAC 61.150 60.000 0.00 0.00 0.00 3.32
1132 1326 1.149964 GGCCGCTATACACGAACACC 61.150 60.000 0.00 0.00 0.00 4.16
1133 1327 1.477030 GCCGCTATACACGAACACCG 61.477 60.000 0.00 0.00 45.44 4.94
1163 1381 3.966543 CCAACCCCAACGCCTCCT 61.967 66.667 0.00 0.00 0.00 3.69
1172 1390 0.610687 CAACGCCTCCTCTTCTCCTT 59.389 55.000 0.00 0.00 0.00 3.36
1199 1426 0.975040 CACTCCACCCCCTCTCTCTG 60.975 65.000 0.00 0.00 0.00 3.35
1200 1427 2.039624 TCCACCCCCTCTCTCTGC 59.960 66.667 0.00 0.00 0.00 4.26
1204 1431 2.837291 CCCCCTCTCTCTGCCTCG 60.837 72.222 0.00 0.00 0.00 4.63
1295 1541 3.092301 TCCGAGCAGAGAAAAGATCTGA 58.908 45.455 7.13 0.00 45.80 3.27
1296 1542 3.703556 TCCGAGCAGAGAAAAGATCTGAT 59.296 43.478 7.13 0.00 45.59 2.90
1375 1621 2.739704 CGTCGTCGCCAGGTACGTA 61.740 63.158 14.03 0.00 39.99 3.57
1478 1728 1.605058 TTACTCTGGCCAGCGAGACC 61.605 60.000 29.09 0.00 0.00 3.85
1565 1828 4.742201 CACGAGTGGGAGTGGGCG 62.742 72.222 0.00 0.00 34.93 6.13
1567 1830 4.742201 CGAGTGGGAGTGGGCGTG 62.742 72.222 0.00 0.00 0.00 5.34
1884 2170 1.201429 ACTCCACCCACCTCCACATC 61.201 60.000 0.00 0.00 0.00 3.06
2015 2301 0.835941 AGGTCAGCTCACCATCCATC 59.164 55.000 10.34 0.00 39.16 3.51
2016 2302 0.179034 GGTCAGCTCACCATCCATCC 60.179 60.000 0.00 0.00 36.32 3.51
2029 2315 0.986527 TCCATCCATCCATCCATCCG 59.013 55.000 0.00 0.00 0.00 4.18
2061 2366 3.884693 TCACATGATCCCAAATTCATCCG 59.115 43.478 0.00 0.00 30.24 4.18
2094 2399 4.754114 CCTCGGAATTTCATTCATCTCCTC 59.246 45.833 0.00 0.00 41.03 3.71
2102 2407 8.661752 AATTTCATTCATCTCCTCCTCTTTTT 57.338 30.769 0.00 0.00 0.00 1.94
2176 2481 7.656707 ATCATTCTTGAATTTTGGTTTTCCG 57.343 32.000 0.00 0.00 37.92 4.30
2226 2538 2.436417 TGCGGATCTGGAAAAGGAAAG 58.564 47.619 3.14 0.00 0.00 2.62
2247 2559 0.251341 AGGTGAGATGGTTGTTGGGC 60.251 55.000 0.00 0.00 0.00 5.36
2310 2627 1.003718 GTTCCAAGGACAGGACGGG 60.004 63.158 0.00 0.00 34.19 5.28
2368 2719 0.460284 CCCATGTGGTCACGAGTAGC 60.460 60.000 0.00 0.00 0.00 3.58
2414 2765 1.069358 GCAAAATTCGGGGGTGTTCAA 59.931 47.619 0.00 0.00 0.00 2.69
2476 2827 1.379843 AATGGATGACCCCGTTGGC 60.380 57.895 0.00 0.00 37.83 4.52
2477 2828 1.863155 AATGGATGACCCCGTTGGCT 61.863 55.000 0.00 0.00 37.83 4.75
2596 2969 3.951979 GACAAAGTCCAAGTCAGTGTG 57.048 47.619 0.00 0.00 32.68 3.82
2606 2979 3.136763 CAAGTCAGTGTGCAGATGAACT 58.863 45.455 0.00 0.00 0.00 3.01
2608 2981 3.136763 AGTCAGTGTGCAGATGAACTTG 58.863 45.455 0.00 0.00 0.00 3.16
2662 3035 4.067896 TGCTTTAGCTTGACAGGAAGAAG 58.932 43.478 0.00 0.00 42.66 2.85
2663 3036 4.202357 TGCTTTAGCTTGACAGGAAGAAGA 60.202 41.667 0.00 0.00 42.66 2.87
2664 3037 4.153296 GCTTTAGCTTGACAGGAAGAAGAC 59.847 45.833 0.00 0.00 38.21 3.01
2677 3053 7.580910 ACAGGAAGAAGACATCATATTCCATT 58.419 34.615 11.80 0.00 38.92 3.16
2684 3060 7.444792 AGAAGACATCATATTCCATTGAGAAGC 59.555 37.037 0.00 0.00 0.00 3.86
2690 3066 6.115446 TCATATTCCATTGAGAAGCTTCGTT 58.885 36.000 20.43 4.20 0.00 3.85
2694 3070 5.147330 TCCATTGAGAAGCTTCGTTTCTA 57.853 39.130 20.43 10.31 33.49 2.10
2697 3073 7.500992 TCCATTGAGAAGCTTCGTTTCTATAT 58.499 34.615 20.43 0.00 33.49 0.86
2698 3074 8.638873 TCCATTGAGAAGCTTCGTTTCTATATA 58.361 33.333 20.43 4.90 33.49 0.86
2738 3127 2.300967 TGGGGGCCATCTCTGTCAC 61.301 63.158 4.39 0.00 0.00 3.67
2754 3144 5.233225 TCTGTCACTTTGTGAGCAGATAAG 58.767 41.667 19.04 0.00 43.57 1.73
2755 3145 5.011023 TCTGTCACTTTGTGAGCAGATAAGA 59.989 40.000 19.04 6.88 43.57 2.10
2756 3146 5.798132 TGTCACTTTGTGAGCAGATAAGAT 58.202 37.500 0.20 0.00 43.57 2.40
2758 3148 7.559486 TGTCACTTTGTGAGCAGATAAGATAT 58.441 34.615 0.20 0.00 43.57 1.63
2759 3149 8.695456 TGTCACTTTGTGAGCAGATAAGATATA 58.305 33.333 0.20 0.00 43.57 0.86
2761 3151 8.695456 TCACTTTGTGAGCAGATAAGATATACA 58.305 33.333 0.00 0.00 37.67 2.29
2762 3152 9.317936 CACTTTGTGAGCAGATAAGATATACAA 57.682 33.333 0.00 0.00 35.23 2.41
2763 3153 9.319143 ACTTTGTGAGCAGATAAGATATACAAC 57.681 33.333 0.00 0.00 0.00 3.32
2764 3154 8.662781 TTTGTGAGCAGATAAGATATACAACC 57.337 34.615 0.00 0.00 0.00 3.77
2765 3155 7.603180 TGTGAGCAGATAAGATATACAACCT 57.397 36.000 0.00 0.00 0.00 3.50
2766 3156 7.436933 TGTGAGCAGATAAGATATACAACCTG 58.563 38.462 0.00 0.00 0.00 4.00
2767 3157 7.287696 TGTGAGCAGATAAGATATACAACCTGA 59.712 37.037 0.00 0.00 0.00 3.86
2787 3177 4.971939 TGATGACTCTGTTTCACATTCCA 58.028 39.130 0.00 0.00 0.00 3.53
2837 3227 4.855715 TCTCAGTGGAGTTTCTGTGTAG 57.144 45.455 0.00 0.00 42.05 2.74
2875 3265 3.407698 TCATACTGCCGTTGTGTTTCAT 58.592 40.909 0.00 0.00 0.00 2.57
2888 3278 3.004629 TGTGTTTCATCTTGTCCATGCAC 59.995 43.478 0.00 0.00 0.00 4.57
2889 3279 2.226200 TGTTTCATCTTGTCCATGCACG 59.774 45.455 0.00 0.00 0.00 5.34
2890 3280 0.804364 TTCATCTTGTCCATGCACGC 59.196 50.000 0.00 0.00 0.00 5.34
2891 3281 0.321475 TCATCTTGTCCATGCACGCA 60.321 50.000 0.00 0.00 0.00 5.24
2899 3289 1.524393 CCATGCACGCAGCCATCTA 60.524 57.895 0.00 0.00 44.83 1.98
2907 3297 3.607775 GCACGCAGCCATCTATTGTTATG 60.608 47.826 0.00 0.00 37.23 1.90
2909 3299 4.453478 CACGCAGCCATCTATTGTTATGAT 59.547 41.667 0.00 0.00 0.00 2.45
2910 3300 5.049198 CACGCAGCCATCTATTGTTATGATT 60.049 40.000 0.00 0.00 0.00 2.57
2911 3301 5.049198 ACGCAGCCATCTATTGTTATGATTG 60.049 40.000 0.00 0.00 0.00 2.67
2912 3302 5.049198 CGCAGCCATCTATTGTTATGATTGT 60.049 40.000 0.00 0.00 0.00 2.71
2915 3305 8.019669 GCAGCCATCTATTGTTATGATTGTTAG 58.980 37.037 0.00 0.00 0.00 2.34
2965 3358 1.000283 AGTACACAGCACAGTGAGCTC 60.000 52.381 12.50 6.82 41.14 4.09
2977 3370 0.595095 GTGAGCTCACTTGGGCTTTG 59.405 55.000 34.54 0.00 43.25 2.77
3379 3777 2.262471 TTCGCCTACGTCTTCCTCGC 62.262 60.000 0.00 0.00 41.18 5.03
3485 3901 2.560981 GGAAAATGGTGGATTCGTTGGT 59.439 45.455 0.00 0.00 0.00 3.67
3493 3909 0.458669 GGATTCGTTGGTAGCTCGGA 59.541 55.000 0.00 2.77 0.00 4.55
3506 3922 1.316706 GCTCGGAGCTGTCTAGTGGT 61.317 60.000 22.32 0.00 38.45 4.16
3507 3923 0.453793 CTCGGAGCTGTCTAGTGGTG 59.546 60.000 0.00 0.00 0.00 4.17
3508 3924 0.965866 TCGGAGCTGTCTAGTGGTGG 60.966 60.000 0.00 0.00 0.00 4.61
3509 3925 1.219393 GGAGCTGTCTAGTGGTGGC 59.781 63.158 0.00 0.00 0.00 5.01
3510 3926 1.544825 GGAGCTGTCTAGTGGTGGCA 61.545 60.000 0.00 0.00 0.00 4.92
3511 3927 0.539051 GAGCTGTCTAGTGGTGGCAT 59.461 55.000 0.00 0.00 0.00 4.40
3514 3930 2.103771 AGCTGTCTAGTGGTGGCATATG 59.896 50.000 0.00 0.00 0.00 1.78
3558 3977 2.772568 TTGCCATTGTCGTCTTGTTG 57.227 45.000 0.00 0.00 0.00 3.33
3582 4001 0.518636 TGGTAGAGTACACGCGACAC 59.481 55.000 15.93 7.30 0.00 3.67
3602 4049 1.327460 CGCACATCATTCGGTACAAGG 59.673 52.381 0.00 0.00 0.00 3.61
3603 4050 1.064060 GCACATCATTCGGTACAAGGC 59.936 52.381 0.00 0.00 0.00 4.35
3609 4056 3.362706 TCATTCGGTACAAGGCTAGAGT 58.637 45.455 0.00 0.00 0.00 3.24
3613 4060 0.178301 GGTACAAGGCTAGAGTGGGC 59.822 60.000 0.00 0.00 0.00 5.36
3614 4061 1.196012 GTACAAGGCTAGAGTGGGCT 58.804 55.000 0.00 0.00 41.37 5.19
3615 4062 1.134670 GTACAAGGCTAGAGTGGGCTG 60.135 57.143 0.00 0.00 39.53 4.85
3616 4063 0.838122 ACAAGGCTAGAGTGGGCTGT 60.838 55.000 0.00 0.00 39.53 4.40
3617 4064 1.195115 CAAGGCTAGAGTGGGCTGTA 58.805 55.000 0.00 0.00 39.53 2.74
3618 4065 1.134670 CAAGGCTAGAGTGGGCTGTAC 60.135 57.143 0.00 0.00 39.53 2.90
3619 4066 0.041238 AGGCTAGAGTGGGCTGTACA 59.959 55.000 0.00 0.00 38.18 2.90
3620 4067 1.123928 GGCTAGAGTGGGCTGTACAT 58.876 55.000 0.00 0.00 0.00 2.29
3622 4069 2.555199 GCTAGAGTGGGCTGTACATTG 58.445 52.381 0.00 0.00 0.00 2.82
3623 4070 2.743183 GCTAGAGTGGGCTGTACATTGG 60.743 54.545 0.00 0.00 0.00 3.16
3626 4074 2.052104 GTGGGCTGTACATTGGGGC 61.052 63.158 0.00 0.00 0.00 5.80
3642 4090 5.765576 TTGGGGCTAGTTAATTACACAGA 57.234 39.130 0.00 0.00 0.00 3.41
3651 4099 9.262472 GCTAGTTAATTACACAGAAAAATCACG 57.738 33.333 0.00 0.00 0.00 4.35
3656 4104 5.524511 TTACACAGAAAAATCACGGATCG 57.475 39.130 0.00 0.00 0.00 3.69
3683 4132 7.713942 ACGTTCCTTAGTTTTACTGTGAAGATT 59.286 33.333 0.00 0.00 0.00 2.40
3684 4133 8.009974 CGTTCCTTAGTTTTACTGTGAAGATTG 58.990 37.037 0.00 0.00 0.00 2.67
3685 4134 8.837389 GTTCCTTAGTTTTACTGTGAAGATTGT 58.163 33.333 0.00 0.00 0.00 2.71
3687 4136 9.403583 TCCTTAGTTTTACTGTGAAGATTGTTT 57.596 29.630 0.00 0.00 0.00 2.83
3688 4137 9.450807 CCTTAGTTTTACTGTGAAGATTGTTTG 57.549 33.333 0.00 0.00 0.00 2.93
3691 4140 8.281212 AGTTTTACTGTGAAGATTGTTTGACT 57.719 30.769 0.00 0.00 0.00 3.41
3721 4170 6.062749 ACACGAGAGGATTAGCATAAGACTA 58.937 40.000 0.00 0.00 0.00 2.59
3724 4173 8.178964 CACGAGAGGATTAGCATAAGACTATAC 58.821 40.741 0.00 0.00 0.00 1.47
3770 4228 7.307455 GCAAAAAGTTTGTTTTTGTACACCAGA 60.307 33.333 19.02 0.00 45.87 3.86
3772 4230 8.474006 AAAAGTTTGTTTTTGTACACCAGATC 57.526 30.769 0.00 0.00 0.00 2.75
3802 4277 4.716784 TGTCTGCCTTCAAGTATACCATCT 59.283 41.667 0.00 0.00 0.00 2.90
3808 4283 5.294552 GCCTTCAAGTATACCATCTGTTCAC 59.705 44.000 0.00 0.00 0.00 3.18
3812 4287 2.124903 GTATACCATCTGTTCACGCGG 58.875 52.381 12.47 0.00 0.00 6.46
3827 4302 0.038159 CGCGGACCTTGAGAGTTCTT 60.038 55.000 0.00 0.00 0.00 2.52
3842 4321 5.245531 AGAGTTCTTCAACTTGTCACACAA 58.754 37.500 0.00 0.00 43.37 3.33
3846 4325 8.050778 AGTTCTTCAACTTGTCACACAAAATA 57.949 30.769 0.00 0.00 40.16 1.40
3848 4327 7.857734 TCTTCAACTTGTCACACAAAATAGA 57.142 32.000 0.00 0.00 37.69 1.98
3864 4343 7.227314 CACAAAATAGATGTGCTTAGCCTATGA 59.773 37.037 0.29 0.00 41.42 2.15
3866 4345 9.440773 CAAAATAGATGTGCTTAGCCTATGATA 57.559 33.333 0.29 0.00 0.00 2.15
3870 4349 7.969690 AGATGTGCTTAGCCTATGATATACT 57.030 36.000 0.29 0.00 0.00 2.12
3871 4350 8.372877 AGATGTGCTTAGCCTATGATATACTT 57.627 34.615 0.29 0.00 0.00 2.24
3872 4351 8.474025 AGATGTGCTTAGCCTATGATATACTTC 58.526 37.037 0.29 0.00 0.00 3.01
3898 4382 0.613260 ACAACCGAGCTGATTGGCTA 59.387 50.000 0.00 0.00 43.20 3.93
3905 4389 1.488393 GAGCTGATTGGCTAGGACCTT 59.512 52.381 0.00 0.00 43.20 3.50
3909 4393 2.239654 CTGATTGGCTAGGACCTTGGAA 59.760 50.000 0.00 0.00 0.00 3.53
3914 4398 2.039879 TGGCTAGGACCTTGGAAGTTTC 59.960 50.000 0.00 0.00 0.00 2.78
3929 4413 6.555812 GGAAGTTTCCCAACTACTTTAGTG 57.444 41.667 0.00 0.00 42.89 2.74
3930 4414 6.293698 GGAAGTTTCCCAACTACTTTAGTGA 58.706 40.000 0.00 0.00 42.89 3.41
3931 4415 6.940867 GGAAGTTTCCCAACTACTTTAGTGAT 59.059 38.462 0.00 0.00 42.89 3.06
3932 4416 7.447545 GGAAGTTTCCCAACTACTTTAGTGATT 59.552 37.037 0.00 0.00 42.89 2.57
3933 4417 9.498176 GAAGTTTCCCAACTACTTTAGTGATTA 57.502 33.333 0.00 0.00 42.89 1.75
3934 4418 9.856162 AAGTTTCCCAACTACTTTAGTGATTAA 57.144 29.630 0.00 0.00 42.89 1.40
3935 4419 9.856162 AGTTTCCCAACTACTTTAGTGATTAAA 57.144 29.630 0.00 0.00 41.81 1.52
3996 4480 8.658499 ATTCTATAAGCCGTTAGGTTGTTAAG 57.342 34.615 0.00 0.00 40.50 1.85
3997 4481 7.408756 TCTATAAGCCGTTAGGTTGTTAAGA 57.591 36.000 0.00 0.00 40.50 2.10
3998 4482 8.015185 TCTATAAGCCGTTAGGTTGTTAAGAT 57.985 34.615 0.00 0.00 40.50 2.40
3999 4483 8.480501 TCTATAAGCCGTTAGGTTGTTAAGATT 58.519 33.333 0.00 0.00 40.50 2.40
4000 4484 5.874895 AAGCCGTTAGGTTGTTAAGATTC 57.125 39.130 0.00 0.00 40.50 2.52
4001 4485 4.901868 AGCCGTTAGGTTGTTAAGATTCA 58.098 39.130 0.00 0.00 40.50 2.57
4002 4486 4.935808 AGCCGTTAGGTTGTTAAGATTCAG 59.064 41.667 0.00 0.00 40.50 3.02
4003 4487 4.694037 GCCGTTAGGTTGTTAAGATTCAGT 59.306 41.667 0.00 0.00 40.50 3.41
4004 4488 5.390567 GCCGTTAGGTTGTTAAGATTCAGTG 60.391 44.000 0.00 0.00 40.50 3.66
4005 4489 5.121768 CCGTTAGGTTGTTAAGATTCAGTGG 59.878 44.000 0.00 0.00 0.00 4.00
4006 4490 5.390567 CGTTAGGTTGTTAAGATTCAGTGGC 60.391 44.000 0.00 0.00 0.00 5.01
4007 4491 4.373156 AGGTTGTTAAGATTCAGTGGCT 57.627 40.909 0.00 0.00 0.00 4.75
4008 4492 5.499004 AGGTTGTTAAGATTCAGTGGCTA 57.501 39.130 0.00 0.00 0.00 3.93
4009 4493 5.876357 AGGTTGTTAAGATTCAGTGGCTAA 58.124 37.500 0.00 0.00 0.00 3.09
4010 4494 5.940470 AGGTTGTTAAGATTCAGTGGCTAAG 59.060 40.000 0.00 0.00 0.00 2.18
4011 4495 5.123979 GGTTGTTAAGATTCAGTGGCTAAGG 59.876 44.000 0.00 0.00 0.00 2.69
4012 4496 4.843728 TGTTAAGATTCAGTGGCTAAGGG 58.156 43.478 0.00 0.00 0.00 3.95
4013 4497 2.426842 AAGATTCAGTGGCTAAGGGC 57.573 50.000 0.00 0.00 40.90 5.19
4014 4498 1.289160 AGATTCAGTGGCTAAGGGCA 58.711 50.000 0.00 0.00 45.89 5.36
4020 4504 4.498148 TGGCTAAGGGCATCTCCA 57.502 55.556 0.00 0.00 43.20 3.86
4021 4505 1.915228 TGGCTAAGGGCATCTCCAC 59.085 57.895 0.00 0.00 43.20 4.02
4022 4506 1.227674 GGCTAAGGGCATCTCCACG 60.228 63.158 0.00 0.00 44.01 4.94
4023 4507 1.686325 GGCTAAGGGCATCTCCACGA 61.686 60.000 0.00 0.00 44.01 4.35
4024 4508 0.249657 GCTAAGGGCATCTCCACGAG 60.250 60.000 0.00 0.00 41.35 4.18
4025 4509 1.115467 CTAAGGGCATCTCCACGAGT 58.885 55.000 0.00 0.00 36.21 4.18
4026 4510 1.482593 CTAAGGGCATCTCCACGAGTT 59.517 52.381 0.00 0.00 36.21 3.01
4027 4511 0.036010 AAGGGCATCTCCACGAGTTG 60.036 55.000 0.00 0.00 36.21 3.16
4029 4513 4.606071 GCATCTCCACGAGTTGCT 57.394 55.556 14.54 0.00 46.03 3.91
4030 4514 3.741029 GCATCTCCACGAGTTGCTA 57.259 52.632 14.54 0.00 46.03 3.49
4031 4515 2.010145 GCATCTCCACGAGTTGCTAA 57.990 50.000 14.54 0.00 46.03 3.09
4032 4516 1.929836 GCATCTCCACGAGTTGCTAAG 59.070 52.381 14.54 0.00 46.03 2.18
4033 4517 2.544685 CATCTCCACGAGTTGCTAAGG 58.455 52.381 0.00 0.00 0.00 2.69
4034 4518 0.895530 TCTCCACGAGTTGCTAAGGG 59.104 55.000 0.00 0.00 0.00 3.95
4035 4519 0.741221 CTCCACGAGTTGCTAAGGGC 60.741 60.000 0.00 0.00 42.22 5.19
4048 4532 4.373348 GCTAAGGGCATCTATACGGTAG 57.627 50.000 0.00 0.00 41.35 3.18
4049 4533 4.015084 GCTAAGGGCATCTATACGGTAGA 58.985 47.826 2.81 2.81 41.35 2.59
4050 4534 4.645588 GCTAAGGGCATCTATACGGTAGAT 59.354 45.833 6.75 6.75 41.35 1.98
4051 4535 5.826737 GCTAAGGGCATCTATACGGTAGATA 59.173 44.000 10.95 0.00 41.35 1.98
4052 4536 6.016943 GCTAAGGGCATCTATACGGTAGATAG 60.017 46.154 10.95 6.61 41.35 2.08
4053 4537 5.712084 AGGGCATCTATACGGTAGATAGA 57.288 43.478 10.95 3.73 39.60 1.98
4054 4538 5.686753 AGGGCATCTATACGGTAGATAGAG 58.313 45.833 10.95 3.22 38.87 2.43
4055 4539 4.276431 GGGCATCTATACGGTAGATAGAGC 59.724 50.000 10.95 10.47 38.87 4.09
4056 4540 4.276431 GGCATCTATACGGTAGATAGAGCC 59.724 50.000 16.75 16.75 38.87 4.70
4057 4541 4.882427 GCATCTATACGGTAGATAGAGCCA 59.118 45.833 10.95 0.00 38.87 4.75
4058 4542 5.357314 GCATCTATACGGTAGATAGAGCCAA 59.643 44.000 10.95 0.00 38.87 4.52
4059 4543 6.678409 GCATCTATACGGTAGATAGAGCCAAC 60.678 46.154 10.95 0.00 38.87 3.77
4060 4544 5.251764 TCTATACGGTAGATAGAGCCAACC 58.748 45.833 0.00 0.00 32.20 3.77
4061 4545 2.456073 ACGGTAGATAGAGCCAACCT 57.544 50.000 0.00 0.00 0.00 3.50
4069 4553 1.821966 TAGAGCCAACCTCCTCCCCA 61.822 60.000 0.00 0.00 41.74 4.96
4077 4561 2.731461 CCTCCTCCCCATCCCCTCT 61.731 68.421 0.00 0.00 0.00 3.69
4441 4949 3.195698 GGTCACCCGATCTTGCGC 61.196 66.667 0.00 0.00 0.00 6.09
4447 4964 4.473520 CCGATCTTGCGCCCTGGT 62.474 66.667 4.18 0.00 0.00 4.00
4655 5198 3.850098 CTCCTTGGCAGCGGTGGTT 62.850 63.158 17.54 0.00 0.00 3.67
4672 5215 0.033504 GTTCGTGCTTCAGGAGGTCA 59.966 55.000 0.00 0.00 30.00 4.02
4688 5231 3.469564 TCAGTGCTGACGGTTTGTT 57.530 47.368 0.00 0.00 34.14 2.83
4826 5370 0.937304 TCTCTCTTGTTGCGTTGTGC 59.063 50.000 0.00 0.00 46.70 4.57
4836 5380 4.059459 CGTTGTGCTGGCGTCGAC 62.059 66.667 5.18 5.18 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.354729 CATTTGAGGGGCCCGTCA 59.645 61.111 37.48 37.48 38.79 4.35
27 28 3.692406 GAGCCCGGACGGTTGAGT 61.692 66.667 0.73 0.00 0.00 3.41
54 55 3.243975 CCATTTTTGGGCTGGATATGAGC 60.244 47.826 0.00 0.00 35.57 4.26
67 68 2.297033 CTCATATCCGCCCCATTTTTGG 59.703 50.000 0.00 0.00 0.00 3.28
72 73 2.078452 CCCTCATATCCGCCCCATT 58.922 57.895 0.00 0.00 0.00 3.16
199 242 8.840321 CGGTTTAAATATCATGATTTGGTCTCT 58.160 33.333 14.65 0.00 31.51 3.10
211 254 5.295045 GGACGTTGACCGGTTTAAATATCAT 59.705 40.000 9.42 0.00 42.24 2.45
222 265 0.032540 GTTGTAGGACGTTGACCGGT 59.967 55.000 6.92 6.92 42.24 5.28
236 279 1.917568 GGTGGATGGGTTAGGGTTGTA 59.082 52.381 0.00 0.00 0.00 2.41
362 470 3.506096 CTCGTACTGGCGCTCCGA 61.506 66.667 7.64 7.27 34.14 4.55
372 480 4.595781 AGATCTCCTACTGGATCTCGTACT 59.404 45.833 0.00 0.00 43.31 2.73
460 571 2.357361 CGACTACTCCTCCTCCTCCTTT 60.357 54.545 0.00 0.00 0.00 3.11
507 618 0.831288 CTCCTCTGCCTCCATCGGAT 60.831 60.000 0.00 0.00 0.00 4.18
519 631 3.074999 GCTCTCGCCACCTCCTCTG 62.075 68.421 0.00 0.00 0.00 3.35
520 632 2.757917 GCTCTCGCCACCTCCTCT 60.758 66.667 0.00 0.00 0.00 3.69
541 662 0.246635 GCCCGACAACTCTTGCTCTA 59.753 55.000 0.00 0.00 0.00 2.43
624 745 1.899142 GATGGACTCTAGGATGGCCTC 59.101 57.143 3.32 0.00 45.54 4.70
822 967 6.147492 CGATAACCTAGCTACTTGTCGTCTAT 59.853 42.308 13.40 0.00 0.00 1.98
824 969 4.272991 CGATAACCTAGCTACTTGTCGTCT 59.727 45.833 13.40 0.00 0.00 4.18
831 976 5.363939 ACTACGTCGATAACCTAGCTACTT 58.636 41.667 0.00 0.00 0.00 2.24
901 1048 6.980593 AGTTGCATCTAGACATCTCATACTC 58.019 40.000 0.00 0.00 0.00 2.59
931 1078 4.042809 ACAGTCATGACCCCTCACAAAATA 59.957 41.667 22.21 0.00 0.00 1.40
936 1083 2.179427 CTACAGTCATGACCCCTCACA 58.821 52.381 22.21 0.52 0.00 3.58
937 1084 2.457598 TCTACAGTCATGACCCCTCAC 58.542 52.381 22.21 0.00 0.00 3.51
938 1085 2.919772 TCTACAGTCATGACCCCTCA 57.080 50.000 22.21 1.26 0.00 3.86
939 1086 2.224161 GCATCTACAGTCATGACCCCTC 60.224 54.545 22.21 0.00 0.00 4.30
940 1087 1.765314 GCATCTACAGTCATGACCCCT 59.235 52.381 22.21 7.43 0.00 4.79
941 1088 1.765314 AGCATCTACAGTCATGACCCC 59.235 52.381 22.21 0.00 0.00 4.95
942 1089 2.169352 ACAGCATCTACAGTCATGACCC 59.831 50.000 22.21 0.00 0.00 4.46
944 1091 4.806247 GGTTACAGCATCTACAGTCATGAC 59.194 45.833 18.47 18.47 0.00 3.06
945 1092 4.466015 TGGTTACAGCATCTACAGTCATGA 59.534 41.667 0.00 0.00 0.00 3.07
948 1095 5.419542 GAATGGTTACAGCATCTACAGTCA 58.580 41.667 0.00 0.00 34.88 3.41
949 1096 4.811557 GGAATGGTTACAGCATCTACAGTC 59.188 45.833 0.00 0.00 34.88 3.51
950 1097 4.471386 AGGAATGGTTACAGCATCTACAGT 59.529 41.667 0.00 0.00 34.88 3.55
951 1098 5.028549 AGGAATGGTTACAGCATCTACAG 57.971 43.478 0.00 0.00 34.88 2.74
962 1150 3.311596 GCAACCGTGATAGGAATGGTTAC 59.688 47.826 0.00 0.00 43.56 2.50
999 1187 8.248253 GTCCAAAACTTGAGTTTAGGAAAAAGA 58.752 33.333 9.35 0.00 46.47 2.52
1001 1189 7.897864 TGTCCAAAACTTGAGTTTAGGAAAAA 58.102 30.769 9.35 0.00 46.47 1.94
1006 1194 5.008712 GTCCTGTCCAAAACTTGAGTTTAGG 59.991 44.000 9.35 11.40 46.47 2.69
1073 1267 1.271054 GCTCCTCTGTTCTCTGCCAAA 60.271 52.381 0.00 0.00 0.00 3.28
1080 1274 0.894141 TGCTCTGCTCCTCTGTTCTC 59.106 55.000 0.00 0.00 0.00 2.87
1095 1289 1.153667 CCGCTCCTCTGTTCTGCTC 60.154 63.158 0.00 0.00 0.00 4.26
1112 1306 1.142314 TGTTCGTGTATAGCGGCCC 59.858 57.895 0.00 0.00 0.00 5.80
1119 1313 3.633065 TGATGGATCGGTGTTCGTGTATA 59.367 43.478 0.00 0.00 40.32 1.47
1120 1314 2.429250 TGATGGATCGGTGTTCGTGTAT 59.571 45.455 0.00 0.00 40.32 2.29
1121 1315 1.819903 TGATGGATCGGTGTTCGTGTA 59.180 47.619 0.00 0.00 40.32 2.90
1122 1316 0.606096 TGATGGATCGGTGTTCGTGT 59.394 50.000 0.00 0.00 40.32 4.49
1124 1318 0.175760 CCTGATGGATCGGTGTTCGT 59.824 55.000 0.00 0.00 36.35 3.85
1125 1319 1.154205 GCCTGATGGATCGGTGTTCG 61.154 60.000 0.00 0.00 36.30 3.95
1126 1320 0.107703 TGCCTGATGGATCGGTGTTC 60.108 55.000 0.00 0.00 34.57 3.18
1127 1321 0.392998 GTGCCTGATGGATCGGTGTT 60.393 55.000 0.00 0.00 34.57 3.32
1128 1322 1.221840 GTGCCTGATGGATCGGTGT 59.778 57.895 0.00 0.00 34.57 4.16
1129 1323 1.524621 GGTGCCTGATGGATCGGTG 60.525 63.158 0.00 0.00 34.57 4.94
1130 1324 1.561769 TTGGTGCCTGATGGATCGGT 61.562 55.000 0.00 0.00 34.57 4.69
1131 1325 1.097547 GTTGGTGCCTGATGGATCGG 61.098 60.000 0.00 0.00 34.57 4.18
1132 1326 1.097547 GGTTGGTGCCTGATGGATCG 61.098 60.000 0.00 0.00 34.57 3.69
1133 1327 0.753111 GGGTTGGTGCCTGATGGATC 60.753 60.000 0.00 0.00 34.57 3.36
1163 1381 1.719378 AGTGGAGGGAGAAGGAGAAGA 59.281 52.381 0.00 0.00 0.00 2.87
1172 1390 2.450243 GGGTGGAGTGGAGGGAGA 59.550 66.667 0.00 0.00 0.00 3.71
1199 1426 0.731855 GTTCGTGTGTAGGACGAGGC 60.732 60.000 0.00 0.00 45.89 4.70
1200 1427 0.453950 CGTTCGTGTGTAGGACGAGG 60.454 60.000 0.00 0.00 45.89 4.63
1204 1431 1.412387 GTTCCGTTCGTGTGTAGGAC 58.588 55.000 0.00 0.00 0.00 3.85
1284 1528 4.509891 GCGTAAAGCGATCAGATCTTTTC 58.490 43.478 8.82 1.31 44.77 2.29
1558 1819 3.414136 TTGACTTGGCACGCCCACT 62.414 57.895 5.42 0.00 45.34 4.00
1560 1821 2.904866 GTTGACTTGGCACGCCCA 60.905 61.111 5.42 0.00 43.51 5.36
1565 1828 4.025401 CCGGCGTTGACTTGGCAC 62.025 66.667 6.01 0.00 0.00 5.01
2015 2301 1.339438 GGATGACGGATGGATGGATGG 60.339 57.143 0.00 0.00 0.00 3.51
2016 2302 1.339438 GGGATGACGGATGGATGGATG 60.339 57.143 0.00 0.00 0.00 3.51
2029 2315 2.213499 GGATCATGTGAACGGGATGAC 58.787 52.381 0.00 0.00 0.00 3.06
2061 2366 4.261801 TGAAATTCCGAGGAGAAATGGAC 58.738 43.478 0.00 0.00 0.00 4.02
2115 2420 5.382618 AAATTGTGATCCTCTTGCTTCAC 57.617 39.130 0.00 0.00 39.11 3.18
2160 2465 7.043059 CGATCTTTTTCGGAAAACCAAAATTCA 60.043 33.333 15.06 0.00 35.50 2.57
2167 2472 4.142988 CGATCGATCTTTTTCGGAAAACCA 60.143 41.667 22.43 5.69 39.56 3.67
2169 2474 5.199424 TCGATCGATCTTTTTCGGAAAAC 57.801 39.130 22.43 3.81 39.56 2.43
2195 2500 5.499139 TCCAGATCCGCAAATTCATAAAC 57.501 39.130 0.00 0.00 0.00 2.01
2197 2502 6.405731 CCTTTTCCAGATCCGCAAATTCATAA 60.406 38.462 0.00 0.00 0.00 1.90
2198 2503 5.067674 CCTTTTCCAGATCCGCAAATTCATA 59.932 40.000 0.00 0.00 0.00 2.15
2199 2504 4.142093 CCTTTTCCAGATCCGCAAATTCAT 60.142 41.667 0.00 0.00 0.00 2.57
2201 2506 3.443681 TCCTTTTCCAGATCCGCAAATTC 59.556 43.478 0.00 0.00 0.00 2.17
2226 2538 1.614317 CCCAACAACCATCTCACCTCC 60.614 57.143 0.00 0.00 0.00 4.30
2247 2559 6.918022 GGAAGTCAAAACATCAACCAACTAAG 59.082 38.462 0.00 0.00 0.00 2.18
2310 2627 0.182299 CCAATCCTTCTCCCTCTGGC 59.818 60.000 0.00 0.00 0.00 4.85
2403 2754 0.392706 CAAAGCCTTTGAACACCCCC 59.607 55.000 11.83 0.00 43.26 5.40
2414 2765 9.740710 AGATTATACAGAAGTAAACAAAGCCTT 57.259 29.630 0.00 0.00 33.13 4.35
2476 2827 5.126067 ACCTCCATTTGAATATTCGTGGAG 58.874 41.667 32.39 32.39 44.60 3.86
2477 2828 5.110814 ACCTCCATTTGAATATTCGTGGA 57.889 39.130 24.10 24.10 35.75 4.02
2588 2961 2.225019 CCAAGTTCATCTGCACACTGAC 59.775 50.000 0.00 0.00 0.00 3.51
2593 2966 2.857186 TAGCCAAGTTCATCTGCACA 57.143 45.000 0.00 0.00 0.00 4.57
2594 2967 3.671702 GCTTTAGCCAAGTTCATCTGCAC 60.672 47.826 0.00 0.00 34.56 4.57
2596 2969 2.751806 AGCTTTAGCCAAGTTCATCTGC 59.248 45.455 0.00 0.00 43.38 4.26
2606 2979 4.220693 TGAGCTGATAAGCTTTAGCCAA 57.779 40.909 19.92 10.43 46.36 4.52
2608 2981 5.764487 AATTGAGCTGATAAGCTTTAGCC 57.236 39.130 19.92 14.28 46.36 3.93
2656 3029 8.899427 TCTCAATGGAATATGATGTCTTCTTC 57.101 34.615 0.00 0.00 0.00 2.87
2662 3035 7.507733 AAGCTTCTCAATGGAATATGATGTC 57.492 36.000 0.00 0.00 0.00 3.06
2663 3036 6.204301 CGAAGCTTCTCAATGGAATATGATGT 59.796 38.462 23.50 0.00 0.00 3.06
2664 3037 6.204301 ACGAAGCTTCTCAATGGAATATGATG 59.796 38.462 23.50 4.88 0.00 3.07
2700 3076 7.631007 CCCCCACTACTAAAGAAATTAGAAGT 58.369 38.462 2.45 0.00 43.16 3.01
2701 3077 6.542735 GCCCCCACTACTAAAGAAATTAGAAG 59.457 42.308 2.45 0.00 43.16 2.85
2702 3078 6.420638 GCCCCCACTACTAAAGAAATTAGAA 58.579 40.000 2.45 0.00 43.16 2.10
2703 3079 5.104235 GGCCCCCACTACTAAAGAAATTAGA 60.104 44.000 0.00 0.00 43.16 2.10
2714 3090 0.941963 AGAGATGGCCCCCACTACTA 59.058 55.000 0.00 0.00 35.80 1.82
2715 3091 0.692419 CAGAGATGGCCCCCACTACT 60.692 60.000 0.00 0.00 35.80 2.57
2717 3093 0.691078 GACAGAGATGGCCCCCACTA 60.691 60.000 0.00 0.00 35.80 2.74
2718 3094 1.997874 GACAGAGATGGCCCCCACT 60.998 63.158 0.00 0.00 35.80 4.00
2719 3095 2.300967 TGACAGAGATGGCCCCCAC 61.301 63.158 0.00 0.00 35.80 4.61
2720 3096 2.124768 TGACAGAGATGGCCCCCA 59.875 61.111 0.00 0.00 38.19 4.96
2738 3127 8.768955 GGTTGTATATCTTATCTGCTCACAAAG 58.231 37.037 0.00 0.00 0.00 2.77
2754 3144 7.981789 TGAAACAGAGTCATCAGGTTGTATATC 59.018 37.037 0.00 0.00 0.00 1.63
2755 3145 7.766278 GTGAAACAGAGTCATCAGGTTGTATAT 59.234 37.037 0.00 0.00 36.32 0.86
2756 3146 7.097192 GTGAAACAGAGTCATCAGGTTGTATA 58.903 38.462 0.00 0.00 36.32 1.47
2758 3148 5.163353 TGTGAAACAGAGTCATCAGGTTGTA 60.163 40.000 0.00 0.00 45.67 2.41
2759 3149 4.130118 GTGAAACAGAGTCATCAGGTTGT 58.870 43.478 0.00 0.00 36.32 3.32
2761 3151 4.422073 TGTGAAACAGAGTCATCAGGTT 57.578 40.909 0.00 0.00 45.67 3.50
2859 3249 2.033299 ACAAGATGAAACACAACGGCAG 59.967 45.455 0.00 0.00 0.00 4.85
2875 3265 2.327343 GCTGCGTGCATGGACAAGA 61.327 57.895 18.05 0.00 42.31 3.02
2888 3278 5.049198 ACAATCATAACAATAGATGGCTGCG 60.049 40.000 0.00 0.00 0.00 5.18
2889 3279 6.323203 ACAATCATAACAATAGATGGCTGC 57.677 37.500 0.00 0.00 0.00 5.25
2890 3280 9.276590 TCTAACAATCATAACAATAGATGGCTG 57.723 33.333 0.00 0.00 0.00 4.85
2891 3281 9.851686 TTCTAACAATCATAACAATAGATGGCT 57.148 29.630 0.00 0.00 0.00 4.75
2939 3332 3.799963 TCACTGTGCTGTGTACTTTTACG 59.200 43.478 2.12 0.00 38.90 3.18
2965 3358 1.508088 GCCGATCAAAGCCCAAGTG 59.492 57.895 0.00 0.00 0.00 3.16
2977 3370 0.039074 CAGGTACCTGATCGCCGATC 60.039 60.000 34.54 19.83 46.30 3.69
3443 3841 1.517257 GTGCTCCATCTCGACGGTG 60.517 63.158 0.00 0.00 0.00 4.94
3444 3842 2.711922 GGTGCTCCATCTCGACGGT 61.712 63.158 0.00 0.00 0.00 4.83
3493 3909 1.866015 TATGCCACCACTAGACAGCT 58.134 50.000 0.00 0.00 0.00 4.24
3506 3922 5.876460 CCGAAGTCATATCATTCATATGCCA 59.124 40.000 0.00 0.00 43.05 4.92
3507 3923 5.220739 GCCGAAGTCATATCATTCATATGCC 60.221 44.000 0.00 0.00 43.05 4.40
3508 3924 5.583854 AGCCGAAGTCATATCATTCATATGC 59.416 40.000 0.00 0.00 43.05 3.14
3509 3925 7.010275 CAGAGCCGAAGTCATATCATTCATATG 59.990 40.741 0.00 0.00 44.26 1.78
3510 3926 7.040494 CAGAGCCGAAGTCATATCATTCATAT 58.960 38.462 0.00 0.00 0.00 1.78
3511 3927 6.015095 ACAGAGCCGAAGTCATATCATTCATA 60.015 38.462 0.00 0.00 0.00 2.15
3514 3930 4.626042 ACAGAGCCGAAGTCATATCATTC 58.374 43.478 0.00 0.00 0.00 2.67
3558 3977 2.159338 TCGCGTGTACTCTACCAAATCC 60.159 50.000 5.77 0.00 0.00 3.01
3582 4001 1.327460 CCTTGTACCGAATGATGTGCG 59.673 52.381 0.00 0.00 0.00 5.34
3602 4049 2.555199 CAATGTACAGCCCACTCTAGC 58.445 52.381 0.33 0.00 0.00 3.42
3603 4050 2.158900 CCCAATGTACAGCCCACTCTAG 60.159 54.545 0.33 0.00 0.00 2.43
3609 4056 0.916845 TAGCCCCAATGTACAGCCCA 60.917 55.000 0.33 0.00 0.00 5.36
3613 4060 7.012044 GTGTAATTAACTAGCCCCAATGTACAG 59.988 40.741 0.33 0.00 0.00 2.74
3614 4061 6.824704 GTGTAATTAACTAGCCCCAATGTACA 59.175 38.462 0.00 0.00 0.00 2.90
3615 4062 6.824704 TGTGTAATTAACTAGCCCCAATGTAC 59.175 38.462 0.00 0.00 0.00 2.90
3616 4063 6.959904 TGTGTAATTAACTAGCCCCAATGTA 58.040 36.000 0.00 0.00 0.00 2.29
3617 4064 5.822204 TGTGTAATTAACTAGCCCCAATGT 58.178 37.500 0.00 0.00 0.00 2.71
3618 4065 6.119536 TCTGTGTAATTAACTAGCCCCAATG 58.880 40.000 0.00 0.00 0.00 2.82
3619 4066 6.321821 TCTGTGTAATTAACTAGCCCCAAT 57.678 37.500 0.00 0.00 0.00 3.16
3620 4067 5.765576 TCTGTGTAATTAACTAGCCCCAA 57.234 39.130 0.00 0.00 0.00 4.12
3622 4069 7.457024 TTTTTCTGTGTAATTAACTAGCCCC 57.543 36.000 0.00 0.00 0.00 5.80
3623 4070 8.736244 TGATTTTTCTGTGTAATTAACTAGCCC 58.264 33.333 0.00 0.00 0.00 5.19
3626 4074 9.755064 CCGTGATTTTTCTGTGTAATTAACTAG 57.245 33.333 0.00 0.00 0.00 2.57
3642 4090 2.414138 GGAACGTCGATCCGTGATTTTT 59.586 45.455 5.73 0.00 41.65 1.94
3651 4099 5.287992 CAGTAAAACTAAGGAACGTCGATCC 59.712 44.000 13.34 13.34 37.22 3.36
3656 4104 6.698766 TCTTCACAGTAAAACTAAGGAACGTC 59.301 38.462 0.00 0.00 0.00 4.34
3700 4149 7.278203 TCGTATAGTCTTATGCTAATCCTCTCG 59.722 40.741 0.00 0.00 0.00 4.04
3746 4195 8.840833 ATCTGGTGTACAAAAACAAACTTTTT 57.159 26.923 0.00 0.00 32.38 1.94
3747 4196 8.311109 AGATCTGGTGTACAAAAACAAACTTTT 58.689 29.630 0.00 0.00 0.00 2.27
3748 4197 7.759433 CAGATCTGGTGTACAAAAACAAACTTT 59.241 33.333 15.38 0.00 0.00 2.66
3751 4209 6.560711 ACAGATCTGGTGTACAAAAACAAAC 58.439 36.000 26.08 0.00 34.19 2.93
3756 4214 7.026631 CAGAAACAGATCTGGTGTACAAAAA 57.973 36.000 26.08 0.00 42.52 1.94
3770 4228 3.777106 TGAAGGCAGACAGAAACAGAT 57.223 42.857 0.00 0.00 0.00 2.90
3772 4230 3.209410 ACTTGAAGGCAGACAGAAACAG 58.791 45.455 0.00 0.00 0.00 3.16
3802 4277 1.300620 CTCAAGGTCCGCGTGAACA 60.301 57.895 13.82 0.00 30.86 3.18
3808 4283 0.038159 AAGAACTCTCAAGGTCCGCG 60.038 55.000 0.00 0.00 40.37 6.46
3812 4287 5.119694 ACAAGTTGAAGAACTCTCAAGGTC 58.880 41.667 10.54 0.00 41.87 3.85
3827 4302 7.416817 CACATCTATTTTGTGTGACAAGTTGA 58.583 34.615 10.54 0.00 44.48 3.18
3846 4325 7.969690 AGTATATCATAGGCTAAGCACATCT 57.030 36.000 0.00 0.00 0.00 2.90
3848 4327 8.372877 AGAAGTATATCATAGGCTAAGCACAT 57.627 34.615 0.00 0.00 0.00 3.21
3864 4343 8.948145 CAGCTCGGTTGTAGTATAGAAGTATAT 58.052 37.037 0.00 0.00 0.00 0.86
3866 4345 6.996879 TCAGCTCGGTTGTAGTATAGAAGTAT 59.003 38.462 0.00 0.00 0.00 2.12
3869 4348 5.752892 TCAGCTCGGTTGTAGTATAGAAG 57.247 43.478 0.00 0.00 0.00 2.85
3870 4349 6.461092 CCAATCAGCTCGGTTGTAGTATAGAA 60.461 42.308 7.92 0.00 0.00 2.10
3871 4350 5.009710 CCAATCAGCTCGGTTGTAGTATAGA 59.990 44.000 7.92 0.00 0.00 1.98
3872 4351 5.223382 CCAATCAGCTCGGTTGTAGTATAG 58.777 45.833 7.92 0.00 0.00 1.31
3878 4362 0.613260 AGCCAATCAGCTCGGTTGTA 59.387 50.000 7.92 0.00 39.48 2.41
3879 4363 0.613260 TAGCCAATCAGCTCGGTTGT 59.387 50.000 7.92 0.00 43.67 3.32
3905 4389 6.059484 CACTAAAGTAGTTGGGAAACTTCCA 58.941 40.000 10.59 0.00 42.41 3.53
3909 4393 9.856162 TTTAATCACTAAAGTAGTTGGGAAACT 57.144 29.630 0.00 0.00 36.76 2.66
3970 4454 9.754382 CTTAACAACCTAACGGCTTATAGAATA 57.246 33.333 0.00 0.00 0.00 1.75
3971 4455 8.480501 TCTTAACAACCTAACGGCTTATAGAAT 58.519 33.333 0.00 0.00 0.00 2.40
3972 4456 7.839907 TCTTAACAACCTAACGGCTTATAGAA 58.160 34.615 0.00 0.00 0.00 2.10
3973 4457 7.408756 TCTTAACAACCTAACGGCTTATAGA 57.591 36.000 0.00 0.00 0.00 1.98
3974 4458 8.658499 AATCTTAACAACCTAACGGCTTATAG 57.342 34.615 0.00 0.00 0.00 1.31
3975 4459 8.259411 TGAATCTTAACAACCTAACGGCTTATA 58.741 33.333 0.00 0.00 0.00 0.98
3976 4460 7.107542 TGAATCTTAACAACCTAACGGCTTAT 58.892 34.615 0.00 0.00 0.00 1.73
3977 4461 6.465948 TGAATCTTAACAACCTAACGGCTTA 58.534 36.000 0.00 0.00 0.00 3.09
3978 4462 5.310451 TGAATCTTAACAACCTAACGGCTT 58.690 37.500 0.00 0.00 0.00 4.35
3979 4463 4.901868 TGAATCTTAACAACCTAACGGCT 58.098 39.130 0.00 0.00 0.00 5.52
3980 4464 4.694037 ACTGAATCTTAACAACCTAACGGC 59.306 41.667 0.00 0.00 0.00 5.68
3981 4465 5.121768 CCACTGAATCTTAACAACCTAACGG 59.878 44.000 0.00 0.00 0.00 4.44
3982 4466 5.390567 GCCACTGAATCTTAACAACCTAACG 60.391 44.000 0.00 0.00 0.00 3.18
3983 4467 5.705905 AGCCACTGAATCTTAACAACCTAAC 59.294 40.000 0.00 0.00 0.00 2.34
3984 4468 5.876357 AGCCACTGAATCTTAACAACCTAA 58.124 37.500 0.00 0.00 0.00 2.69
3985 4469 5.499004 AGCCACTGAATCTTAACAACCTA 57.501 39.130 0.00 0.00 0.00 3.08
3986 4470 4.373156 AGCCACTGAATCTTAACAACCT 57.627 40.909 0.00 0.00 0.00 3.50
3987 4471 5.123979 CCTTAGCCACTGAATCTTAACAACC 59.876 44.000 0.00 0.00 0.00 3.77
3988 4472 5.123979 CCCTTAGCCACTGAATCTTAACAAC 59.876 44.000 0.00 0.00 0.00 3.32
3989 4473 5.253330 CCCTTAGCCACTGAATCTTAACAA 58.747 41.667 0.00 0.00 0.00 2.83
3990 4474 4.843728 CCCTTAGCCACTGAATCTTAACA 58.156 43.478 0.00 0.00 0.00 2.41
3991 4475 3.628032 GCCCTTAGCCACTGAATCTTAAC 59.372 47.826 0.00 0.00 34.35 2.01
3992 4476 3.265737 TGCCCTTAGCCACTGAATCTTAA 59.734 43.478 0.00 0.00 42.71 1.85
3993 4477 2.843730 TGCCCTTAGCCACTGAATCTTA 59.156 45.455 0.00 0.00 42.71 2.10
3994 4478 1.635487 TGCCCTTAGCCACTGAATCTT 59.365 47.619 0.00 0.00 42.71 2.40
3995 4479 1.289160 TGCCCTTAGCCACTGAATCT 58.711 50.000 0.00 0.00 42.71 2.40
3996 4480 2.158696 AGATGCCCTTAGCCACTGAATC 60.159 50.000 0.00 0.00 42.71 2.52
3997 4481 1.849039 AGATGCCCTTAGCCACTGAAT 59.151 47.619 0.00 0.00 42.71 2.57
3998 4482 1.210478 GAGATGCCCTTAGCCACTGAA 59.790 52.381 0.00 0.00 42.71 3.02
3999 4483 0.833287 GAGATGCCCTTAGCCACTGA 59.167 55.000 0.00 0.00 42.71 3.41
4000 4484 0.179034 GGAGATGCCCTTAGCCACTG 60.179 60.000 0.00 0.00 42.71 3.66
4001 4485 0.621571 TGGAGATGCCCTTAGCCACT 60.622 55.000 0.00 0.00 42.71 4.00
4002 4486 0.464554 GTGGAGATGCCCTTAGCCAC 60.465 60.000 0.00 0.00 42.71 5.01
4003 4487 1.915228 GTGGAGATGCCCTTAGCCA 59.085 57.895 0.00 0.00 42.71 4.75
4004 4488 1.227674 CGTGGAGATGCCCTTAGCC 60.228 63.158 0.00 0.00 42.71 3.93
4005 4489 0.249657 CTCGTGGAGATGCCCTTAGC 60.250 60.000 0.00 0.00 44.14 3.09
4006 4490 1.115467 ACTCGTGGAGATGCCCTTAG 58.885 55.000 0.00 0.00 34.97 2.18
4007 4491 1.207089 CAACTCGTGGAGATGCCCTTA 59.793 52.381 0.00 0.00 34.97 2.69
4008 4492 0.036010 CAACTCGTGGAGATGCCCTT 60.036 55.000 0.00 0.00 34.97 3.95
4009 4493 1.599047 CAACTCGTGGAGATGCCCT 59.401 57.895 0.00 0.00 34.97 5.19
4010 4494 4.208632 CAACTCGTGGAGATGCCC 57.791 61.111 0.00 0.00 34.97 5.36
4013 4497 2.544685 CCTTAGCAACTCGTGGAGATG 58.455 52.381 0.00 0.00 35.90 2.90
4014 4498 1.482593 CCCTTAGCAACTCGTGGAGAT 59.517 52.381 0.00 0.00 33.32 2.75
4015 4499 0.895530 CCCTTAGCAACTCGTGGAGA 59.104 55.000 0.00 0.00 33.32 3.71
4016 4500 0.741221 GCCCTTAGCAACTCGTGGAG 60.741 60.000 0.00 0.00 42.97 3.86
4017 4501 1.295423 GCCCTTAGCAACTCGTGGA 59.705 57.895 0.00 0.00 42.97 4.02
4018 4502 3.890674 GCCCTTAGCAACTCGTGG 58.109 61.111 0.00 0.00 42.97 4.94
4027 4511 4.015084 TCTACCGTATAGATGCCCTTAGC 58.985 47.826 0.00 0.00 44.14 3.09
4028 4512 7.281098 TCTATCTACCGTATAGATGCCCTTAG 58.719 42.308 13.94 5.32 35.95 2.18
4029 4513 7.204243 TCTATCTACCGTATAGATGCCCTTA 57.796 40.000 13.94 0.00 35.95 2.69
4030 4514 6.075949 TCTATCTACCGTATAGATGCCCTT 57.924 41.667 13.94 0.00 35.95 3.95
4031 4515 5.686753 CTCTATCTACCGTATAGATGCCCT 58.313 45.833 13.94 0.00 35.83 5.19
4032 4516 4.276431 GCTCTATCTACCGTATAGATGCCC 59.724 50.000 13.94 0.97 35.83 5.36
4033 4517 4.276431 GGCTCTATCTACCGTATAGATGCC 59.724 50.000 13.94 13.70 39.81 4.40
4034 4518 4.882427 TGGCTCTATCTACCGTATAGATGC 59.118 45.833 13.94 9.89 35.83 3.91
4035 4519 6.183360 GGTTGGCTCTATCTACCGTATAGATG 60.183 46.154 13.94 6.79 35.83 2.90
4036 4520 5.887035 GGTTGGCTCTATCTACCGTATAGAT 59.113 44.000 10.37 10.37 35.83 1.98
4037 4521 5.013913 AGGTTGGCTCTATCTACCGTATAGA 59.986 44.000 0.00 0.00 35.26 1.98
4038 4522 5.254901 AGGTTGGCTCTATCTACCGTATAG 58.745 45.833 0.00 0.00 34.09 1.31
4039 4523 5.251764 GAGGTTGGCTCTATCTACCGTATA 58.748 45.833 0.00 0.00 34.09 1.47
4040 4524 4.080687 GAGGTTGGCTCTATCTACCGTAT 58.919 47.826 0.00 0.00 34.09 3.06
4041 4525 3.484407 GAGGTTGGCTCTATCTACCGTA 58.516 50.000 0.00 0.00 34.09 4.02
4042 4526 2.308690 GAGGTTGGCTCTATCTACCGT 58.691 52.381 0.00 0.00 34.09 4.83
4043 4527 1.614413 GGAGGTTGGCTCTATCTACCG 59.386 57.143 0.00 0.00 34.09 4.02
4044 4528 2.894765 GAGGAGGTTGGCTCTATCTACC 59.105 54.545 0.00 0.00 0.00 3.18
4045 4529 2.894765 GGAGGAGGTTGGCTCTATCTAC 59.105 54.545 0.00 0.00 0.00 2.59
4046 4530 2.158295 GGGAGGAGGTTGGCTCTATCTA 60.158 54.545 0.00 0.00 0.00 1.98
4047 4531 1.413808 GGGAGGAGGTTGGCTCTATCT 60.414 57.143 0.00 0.00 0.00 1.98
4048 4532 1.052617 GGGAGGAGGTTGGCTCTATC 58.947 60.000 0.00 0.00 0.00 2.08
4049 4533 0.400670 GGGGAGGAGGTTGGCTCTAT 60.401 60.000 0.00 0.00 0.00 1.98
4050 4534 1.003051 GGGGAGGAGGTTGGCTCTA 59.997 63.158 0.00 0.00 0.00 2.43
4051 4535 2.285743 GGGGAGGAGGTTGGCTCT 60.286 66.667 0.00 0.00 0.00 4.09
4052 4536 1.988982 GATGGGGAGGAGGTTGGCTC 61.989 65.000 0.00 0.00 0.00 4.70
4053 4537 2.003548 GATGGGGAGGAGGTTGGCT 61.004 63.158 0.00 0.00 0.00 4.75
4054 4538 2.597903 GATGGGGAGGAGGTTGGC 59.402 66.667 0.00 0.00 0.00 4.52
4055 4539 2.386935 GGGATGGGGAGGAGGTTGG 61.387 68.421 0.00 0.00 0.00 3.77
4056 4540 2.386935 GGGGATGGGGAGGAGGTTG 61.387 68.421 0.00 0.00 0.00 3.77
4057 4541 2.044620 GGGGATGGGGAGGAGGTT 59.955 66.667 0.00 0.00 0.00 3.50
4058 4542 2.967014 AGGGGATGGGGAGGAGGT 60.967 66.667 0.00 0.00 0.00 3.85
4059 4543 2.122189 GAGGGGATGGGGAGGAGG 60.122 72.222 0.00 0.00 0.00 4.30
4060 4544 1.152139 GAGAGGGGATGGGGAGGAG 60.152 68.421 0.00 0.00 0.00 3.69
4061 4545 2.727071 GGAGAGGGGATGGGGAGGA 61.727 68.421 0.00 0.00 0.00 3.71
4128 4612 1.151587 AGGGGGAAGAAGAAGGCCA 60.152 57.895 5.01 0.00 0.00 5.36
4134 4618 1.305887 GACGGGAGGGGGAAGAAGA 60.306 63.158 0.00 0.00 0.00 2.87
4255 4748 2.939760 TACCCGGCCAGATCGTCCAT 62.940 60.000 2.24 0.00 0.00 3.41
4256 4749 3.665515 TACCCGGCCAGATCGTCCA 62.666 63.158 2.24 0.00 0.00 4.02
4493 5035 1.668294 CACCCGAAGAGTGAGCAGT 59.332 57.895 0.00 0.00 39.11 4.40
4655 5198 0.827925 ACTGACCTCCTGAAGCACGA 60.828 55.000 0.00 0.00 0.00 4.35
4672 5215 1.940613 GAGAAACAAACCGTCAGCACT 59.059 47.619 0.00 0.00 0.00 4.40
4688 5231 1.405933 CCATCATGACACGCCAGAGAA 60.406 52.381 0.00 0.00 0.00 2.87
4757 5300 2.266055 GACCAAGTCGGCTCCCTG 59.734 66.667 0.00 0.00 39.03 4.45
4792 5336 2.094957 AGAGAGAAGAGCACTAACGCAC 60.095 50.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.