Multiple sequence alignment - TraesCS3B01G506600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G506600 chr3B 100.000 5765 0 0 1 5765 750133510 750139274 0.000000e+00 10647.0
1 TraesCS3B01G506600 chr3B 98.261 115 2 0 2701 2815 779534337 779534223 9.790000e-48 202.0
2 TraesCS3B01G506600 chr3B 96.629 89 3 0 612 700 373883286 373883198 1.290000e-31 148.0
3 TraesCS3B01G506600 chr3B 96.629 89 3 0 612 700 561100961 561100873 1.290000e-31 148.0
4 TraesCS3B01G506600 chr3A 94.607 2967 94 19 2804 5765 697737744 697740649 0.000000e+00 4532.0
5 TraesCS3B01G506600 chr3A 88.835 824 62 10 1524 2330 697736184 697736994 0.000000e+00 985.0
6 TraesCS3B01G506600 chr3A 95.141 391 11 3 2327 2717 697737297 697737679 1.370000e-170 610.0
7 TraesCS3B01G506600 chr3A 85.274 584 37 18 827 1377 697735544 697736111 1.810000e-154 556.0
8 TraesCS3B01G506600 chr3A 95.604 91 4 0 610 700 90877947 90878037 4.650000e-31 147.0
9 TraesCS3B01G506600 chr3A 79.602 201 13 15 255 446 697734798 697734979 1.010000e-22 119.0
10 TraesCS3B01G506600 chr3A 78.344 157 12 15 1 153 697734527 697734665 1.330000e-11 82.4
11 TraesCS3B01G506600 chr3D 95.451 2770 96 13 2811 5568 562697718 562700469 0.000000e+00 4390.0
12 TraesCS3B01G506600 chr3D 86.792 1643 118 53 721 2317 562695529 562697118 0.000000e+00 1740.0
13 TraesCS3B01G506600 chr3D 95.462 595 23 2 2117 2711 562697133 562697723 0.000000e+00 946.0
14 TraesCS3B01G506600 chr3D 78.600 500 44 23 1 449 562694660 562695147 7.360000e-69 272.0
15 TraesCS3B01G506600 chr1B 84.309 752 56 20 910 1642 383032345 383033053 0.000000e+00 678.0
16 TraesCS3B01G506600 chr1B 87.179 429 50 4 3307 3732 437601776 437602202 3.120000e-132 483.0
17 TraesCS3B01G506600 chr1B 94.898 98 4 1 604 700 20693413 20693316 1.000000e-32 152.0
18 TraesCS3B01G506600 chr1B 82.895 152 26 0 2521 2672 437598803 437598954 2.800000e-28 137.0
19 TraesCS3B01G506600 chr1D 87.646 429 48 4 3307 3732 325486599 325487025 1.440000e-135 494.0
20 TraesCS3B01G506600 chr1D 82.895 152 26 0 2521 2672 325483600 325483751 2.800000e-28 137.0
21 TraesCS3B01G506600 chr1A 87.589 419 47 4 3307 3722 419031639 419031223 1.120000e-131 481.0
22 TraesCS3B01G506600 chr1A 86.400 125 17 0 2548 2672 419034800 419034676 2.800000e-28 137.0
23 TraesCS3B01G506600 chr6A 100.000 109 0 0 2709 2817 436115577 436115469 9.790000e-48 202.0
24 TraesCS3B01G506600 chr6A 97.391 115 3 0 2701 2815 100354388 100354502 4.560000e-46 196.0
25 TraesCS3B01G506600 chr6A 96.629 89 3 0 612 700 596198643 596198555 1.290000e-31 148.0
26 TraesCS3B01G506600 chr2D 99.099 111 1 0 2707 2817 62385800 62385910 3.520000e-47 200.0
27 TraesCS3B01G506600 chr6B 97.436 117 1 2 2709 2824 599445618 599445733 1.270000e-46 198.0
28 TraesCS3B01G506600 chr6B 97.391 115 3 0 2701 2815 333821966 333822080 4.560000e-46 196.0
29 TraesCS3B01G506600 chr6B 94.949 99 5 0 602 700 460906311 460906213 7.730000e-34 156.0
30 TraesCS3B01G506600 chr5A 97.414 116 3 0 2708 2823 656477420 656477305 1.270000e-46 198.0
31 TraesCS3B01G506600 chr7B 93.651 126 6 2 2705 2829 113133206 113133330 2.740000e-43 187.0
32 TraesCS3B01G506600 chr2A 94.355 124 3 4 2692 2815 16546926 16547045 2.740000e-43 187.0
33 TraesCS3B01G506600 chr2B 95.918 98 4 0 603 700 146718003 146718100 5.980000e-35 159.0
34 TraesCS3B01G506600 chr2B 95.652 92 4 0 609 700 464021305 464021396 1.290000e-31 148.0
35 TraesCS3B01G506600 chr4B 94.000 100 3 3 601 700 621925 621829 1.290000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G506600 chr3B 750133510 750139274 5764 False 10647.0 10647 100.000000 1 5765 1 chr3B.!!$F1 5764
1 TraesCS3B01G506600 chr3A 697734527 697740649 6122 False 1147.4 4532 86.967167 1 5765 6 chr3A.!!$F2 5764
2 TraesCS3B01G506600 chr3D 562694660 562700469 5809 False 1837.0 4390 89.076250 1 5568 4 chr3D.!!$F1 5567
3 TraesCS3B01G506600 chr1B 383032345 383033053 708 False 678.0 678 84.309000 910 1642 1 chr1B.!!$F1 732
4 TraesCS3B01G506600 chr1B 437598803 437602202 3399 False 310.0 483 85.037000 2521 3732 2 chr1B.!!$F2 1211
5 TraesCS3B01G506600 chr1D 325483600 325487025 3425 False 315.5 494 85.270500 2521 3732 2 chr1D.!!$F1 1211
6 TraesCS3B01G506600 chr1A 419031223 419034800 3577 True 309.0 481 86.994500 2548 3722 2 chr1A.!!$R1 1174

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
959 1457 0.179073 CCTGTAGCTTCCATCCCACG 60.179 60.0 0.00 0.00 0.00 4.94 F
1410 1944 0.173481 TACTGCCTGCGCTTCTACTG 59.827 55.0 9.73 0.49 35.36 2.74 F
2681 3750 0.104304 GTGGGCAGGTCAGTATACCG 59.896 60.0 0.00 0.00 44.77 4.02 F
3680 7397 0.034380 TCGACAACACCAAACCCCAA 60.034 50.0 0.00 0.00 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2510 3579 0.687354 CCCGAGGGATGGTTAGATGG 59.313 60.0 0.84 0.0 37.50 3.51 R
2798 3873 0.971386 GTGTACTCCCTCCGTTTGGA 59.029 55.0 0.00 0.0 43.88 3.53 R
4448 8165 0.029300 CCCACATTTTAGCATCCGCG 59.971 55.0 0.00 0.0 45.49 6.46 R
5598 9321 0.248743 AACGTCGTCTTGTCGAAGCA 60.249 50.0 0.00 0.0 41.41 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 46 2.778679 GGCACGCACGTTCTCATC 59.221 61.111 0.00 0.00 0.00 2.92
39 47 2.027073 GGCACGCACGTTCTCATCA 61.027 57.895 0.00 0.00 0.00 3.07
67 75 1.008875 TGCACTGCTTCTACGCTTCG 61.009 55.000 1.98 0.00 0.00 3.79
110 118 1.154188 GAGACACCTGACGCGAGAC 60.154 63.158 15.93 4.24 0.00 3.36
113 121 2.131294 GACACCTGACGCGAGACACT 62.131 60.000 15.93 0.00 0.00 3.55
236 272 1.377994 GGGCAGGGCAGGATAGATG 59.622 63.158 0.00 0.00 0.00 2.90
253 306 1.767681 GATGCTCTCTCCACCTCCATT 59.232 52.381 0.00 0.00 0.00 3.16
275 360 2.332406 ATCGAGTTGATCGGTTTGGCG 61.332 52.381 0.00 0.00 44.13 5.69
287 395 3.928375 TCGGTTTGGCGACTAGTTTAATC 59.072 43.478 0.00 0.00 0.00 1.75
377 489 0.544357 TTCGGCCCTTCTTCCAGAGA 60.544 55.000 0.00 0.00 0.00 3.10
435 561 1.165270 GCGCAAAACTACCTCCACAT 58.835 50.000 0.30 0.00 0.00 3.21
449 575 8.700973 ACTACCTCCACATAAACAAAAACAAAT 58.299 29.630 0.00 0.00 0.00 2.32
486 823 9.638239 ACAAATAAATTAAAGATGCGTGACAAT 57.362 25.926 0.00 0.00 0.00 2.71
505 842 2.328992 TATCTACCACCACCACCACA 57.671 50.000 0.00 0.00 0.00 4.17
506 843 1.440618 ATCTACCACCACCACCACAA 58.559 50.000 0.00 0.00 0.00 3.33
507 844 0.470766 TCTACCACCACCACCACAAC 59.529 55.000 0.00 0.00 0.00 3.32
532 869 2.543848 CGGATGGGTATGTGAACGAATG 59.456 50.000 0.00 0.00 0.00 2.67
536 873 3.527533 TGGGTATGTGAACGAATGCTAC 58.472 45.455 0.00 0.00 0.00 3.58
541 878 1.070914 TGTGAACGAATGCTACCCACA 59.929 47.619 0.00 0.00 0.00 4.17
547 884 1.935873 CGAATGCTACCCACACATGAG 59.064 52.381 0.00 0.00 0.00 2.90
549 886 1.583556 ATGCTACCCACACATGAGGA 58.416 50.000 0.00 0.00 0.00 3.71
550 887 0.904649 TGCTACCCACACATGAGGAG 59.095 55.000 0.00 0.00 0.00 3.69
561 898 5.396772 CCACACATGAGGAGGTACATACAAT 60.397 44.000 0.00 0.00 0.00 2.71
562 899 5.755375 CACACATGAGGAGGTACATACAATC 59.245 44.000 0.00 0.00 0.00 2.67
574 911 3.461061 ACATACAATCTGTCGCTCCATG 58.539 45.455 0.00 0.00 0.00 3.66
577 914 3.610040 ACAATCTGTCGCTCCATGTAA 57.390 42.857 0.00 0.00 0.00 2.41
580 917 5.292765 ACAATCTGTCGCTCCATGTAATAG 58.707 41.667 0.00 0.00 0.00 1.73
584 921 4.024302 TCTGTCGCTCCATGTAATAGTACG 60.024 45.833 0.00 0.00 32.40 3.67
585 922 3.628942 TGTCGCTCCATGTAATAGTACGT 59.371 43.478 0.00 0.00 32.40 3.57
586 923 4.217497 GTCGCTCCATGTAATAGTACGTC 58.783 47.826 0.00 0.00 32.40 4.34
587 924 3.251729 TCGCTCCATGTAATAGTACGTCC 59.748 47.826 0.00 0.00 32.40 4.79
588 925 3.562505 GCTCCATGTAATAGTACGTCCG 58.437 50.000 0.00 0.00 32.40 4.79
590 927 4.781071 CTCCATGTAATAGTACGTCCGAC 58.219 47.826 0.00 0.00 32.40 4.79
609 946 4.046462 CGACGGTGTGAAAGAGAAAACTA 58.954 43.478 0.00 0.00 0.00 2.24
617 954 6.645827 GTGTGAAAGAGAAAACTAGTACTCCC 59.354 42.308 15.98 9.66 0.00 4.30
618 955 6.553852 TGTGAAAGAGAAAACTAGTACTCCCT 59.446 38.462 15.98 2.81 0.00 4.20
619 956 7.092079 GTGAAAGAGAAAACTAGTACTCCCTC 58.908 42.308 15.98 13.74 0.00 4.30
620 957 7.011382 TGAAAGAGAAAACTAGTACTCCCTCT 58.989 38.462 15.98 11.65 0.00 3.69
621 958 6.844097 AAGAGAAAACTAGTACTCCCTCTG 57.156 41.667 15.98 0.00 31.03 3.35
622 959 5.894653 AGAGAAAACTAGTACTCCCTCTGT 58.105 41.667 15.98 0.00 0.00 3.41
623 960 6.316513 AGAGAAAACTAGTACTCCCTCTGTT 58.683 40.000 15.98 0.00 0.00 3.16
624 961 6.434965 AGAGAAAACTAGTACTCCCTCTGTTC 59.565 42.308 15.98 0.00 0.00 3.18
625 962 6.075984 AGAAAACTAGTACTCCCTCTGTTCA 58.924 40.000 0.00 0.00 0.00 3.18
626 963 5.725325 AAACTAGTACTCCCTCTGTTCAC 57.275 43.478 0.00 0.00 0.00 3.18
627 964 4.661247 ACTAGTACTCCCTCTGTTCACT 57.339 45.455 0.00 0.00 0.00 3.41
628 965 5.000570 ACTAGTACTCCCTCTGTTCACTT 57.999 43.478 0.00 0.00 0.00 3.16
629 966 5.395611 ACTAGTACTCCCTCTGTTCACTTT 58.604 41.667 0.00 0.00 0.00 2.66
630 967 5.839606 ACTAGTACTCCCTCTGTTCACTTTT 59.160 40.000 0.00 0.00 0.00 2.27
631 968 7.008941 ACTAGTACTCCCTCTGTTCACTTTTA 58.991 38.462 0.00 0.00 0.00 1.52
632 969 6.936968 AGTACTCCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
633 970 9.186837 CTAGTACTCCCTCTGTTCACTTTTATA 57.813 37.037 0.00 0.00 0.00 0.98
634 971 8.431910 AGTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
635 972 8.532819 AGTACTCCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
636 973 7.317722 ACTCCCTCTGTTCACTTTTATAAGT 57.682 36.000 0.00 0.00 45.40 2.24
637 974 7.387643 ACTCCCTCTGTTCACTTTTATAAGTC 58.612 38.462 0.00 0.00 42.67 3.01
638 975 7.235812 ACTCCCTCTGTTCACTTTTATAAGTCT 59.764 37.037 0.00 0.00 42.67 3.24
639 976 7.974504 TCCCTCTGTTCACTTTTATAAGTCTT 58.025 34.615 0.00 0.00 42.67 3.01
640 977 8.437575 TCCCTCTGTTCACTTTTATAAGTCTTT 58.562 33.333 0.00 0.00 42.67 2.52
641 978 9.720769 CCCTCTGTTCACTTTTATAAGTCTTTA 57.279 33.333 0.00 0.00 42.67 1.85
662 999 7.862372 TCTTTAAAGACATTTCAGACAACATGC 59.138 33.333 13.99 0.00 0.00 4.06
663 1000 5.518848 AAAGACATTTCAGACAACATGCA 57.481 34.783 0.00 0.00 0.00 3.96
664 1001 5.518848 AAGACATTTCAGACAACATGCAA 57.481 34.783 0.00 0.00 0.00 4.08
665 1002 5.518848 AGACATTTCAGACAACATGCAAA 57.481 34.783 0.00 0.00 0.00 3.68
666 1003 5.526115 AGACATTTCAGACAACATGCAAAG 58.474 37.500 0.00 0.00 0.00 2.77
667 1004 4.053295 ACATTTCAGACAACATGCAAAGC 58.947 39.130 0.00 0.00 0.00 3.51
668 1005 3.797451 TTTCAGACAACATGCAAAGCA 57.203 38.095 0.00 0.00 44.86 3.91
669 1006 3.358707 TTCAGACAACATGCAAAGCAG 57.641 42.857 0.00 0.00 43.65 4.24
670 1007 1.001048 TCAGACAACATGCAAAGCAGC 60.001 47.619 0.00 0.00 43.65 5.25
671 1008 0.316204 AGACAACATGCAAAGCAGCC 59.684 50.000 0.00 0.00 43.65 4.85
672 1009 0.316204 GACAACATGCAAAGCAGCCT 59.684 50.000 0.00 0.00 43.65 4.58
673 1010 1.541147 GACAACATGCAAAGCAGCCTA 59.459 47.619 0.00 0.00 43.65 3.93
674 1011 2.165030 GACAACATGCAAAGCAGCCTAT 59.835 45.455 0.00 0.00 43.65 2.57
675 1012 2.564062 ACAACATGCAAAGCAGCCTATT 59.436 40.909 0.00 0.00 43.65 1.73
676 1013 3.007182 ACAACATGCAAAGCAGCCTATTT 59.993 39.130 0.00 0.00 43.65 1.40
677 1014 3.967332 ACATGCAAAGCAGCCTATTTT 57.033 38.095 0.00 0.00 43.65 1.82
678 1015 4.276058 ACATGCAAAGCAGCCTATTTTT 57.724 36.364 0.00 0.00 43.65 1.94
679 1016 5.404466 ACATGCAAAGCAGCCTATTTTTA 57.596 34.783 0.00 0.00 43.65 1.52
680 1017 5.413499 ACATGCAAAGCAGCCTATTTTTAG 58.587 37.500 0.00 0.00 43.65 1.85
681 1018 5.047092 ACATGCAAAGCAGCCTATTTTTAGT 60.047 36.000 0.00 0.00 43.65 2.24
682 1019 5.467035 TGCAAAGCAGCCTATTTTTAGTT 57.533 34.783 0.00 0.00 33.32 2.24
683 1020 5.229423 TGCAAAGCAGCCTATTTTTAGTTG 58.771 37.500 0.00 0.00 33.32 3.16
684 1021 5.221422 TGCAAAGCAGCCTATTTTTAGTTGT 60.221 36.000 0.00 0.00 33.32 3.32
685 1022 5.346011 GCAAAGCAGCCTATTTTTAGTTGTC 59.654 40.000 0.00 0.00 0.00 3.18
686 1023 6.681777 CAAAGCAGCCTATTTTTAGTTGTCT 58.318 36.000 0.00 0.00 0.00 3.41
687 1024 5.886960 AGCAGCCTATTTTTAGTTGTCTG 57.113 39.130 0.00 0.00 0.00 3.51
688 1025 5.560724 AGCAGCCTATTTTTAGTTGTCTGA 58.439 37.500 0.00 0.00 0.00 3.27
689 1026 6.003950 AGCAGCCTATTTTTAGTTGTCTGAA 58.996 36.000 0.00 0.00 0.00 3.02
690 1027 6.490040 AGCAGCCTATTTTTAGTTGTCTGAAA 59.510 34.615 0.00 0.00 0.00 2.69
691 1028 7.177392 AGCAGCCTATTTTTAGTTGTCTGAAAT 59.823 33.333 0.00 0.00 31.12 2.17
692 1029 7.274250 GCAGCCTATTTTTAGTTGTCTGAAATG 59.726 37.037 0.00 0.00 31.12 2.32
693 1030 8.514594 CAGCCTATTTTTAGTTGTCTGAAATGA 58.485 33.333 0.00 0.00 31.12 2.57
694 1031 8.515414 AGCCTATTTTTAGTTGTCTGAAATGAC 58.485 33.333 0.00 0.00 37.47 3.06
695 1032 8.515414 GCCTATTTTTAGTTGTCTGAAATGACT 58.485 33.333 0.00 0.00 37.79 3.41
710 1047 5.128171 TGAAATGACTTATACTGTACCGCCT 59.872 40.000 0.00 0.00 0.00 5.52
716 1053 1.686325 ATACTGTACCGCCTGCCTGG 61.686 60.000 0.00 0.00 39.35 4.45
756 1093 2.093306 ATTGTGGATGACGCGAGAAA 57.907 45.000 15.93 0.00 0.00 2.52
759 1096 1.999735 TGTGGATGACGCGAGAAATTC 59.000 47.619 15.93 0.00 0.00 2.17
765 1102 1.130373 TGACGCGAGAAATTCCAATGC 59.870 47.619 15.93 0.00 0.00 3.56
766 1103 0.451783 ACGCGAGAAATTCCAATGCC 59.548 50.000 15.93 0.00 0.00 4.40
767 1104 0.734889 CGCGAGAAATTCCAATGCCT 59.265 50.000 0.00 0.00 0.00 4.75
768 1105 1.268234 CGCGAGAAATTCCAATGCCTC 60.268 52.381 0.00 0.00 0.00 4.70
769 1106 1.745087 GCGAGAAATTCCAATGCCTCA 59.255 47.619 0.00 0.00 0.00 3.86
825 1178 2.204448 TGCCCCCAAAGATCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
827 1180 3.074907 GCCCCCAAAGATCCCCTCC 62.075 68.421 0.00 0.00 0.00 4.30
828 1181 1.309102 CCCCCAAAGATCCCCTCCT 60.309 63.158 0.00 0.00 0.00 3.69
830 1183 0.327964 CCCCAAAGATCCCCTCCTCT 60.328 60.000 0.00 0.00 0.00 3.69
833 1186 1.626350 CCAAAGATCCCCTCCTCTCCA 60.626 57.143 0.00 0.00 0.00 3.86
835 1188 1.022903 AAGATCCCCTCCTCTCCACT 58.977 55.000 0.00 0.00 0.00 4.00
900 1390 2.251818 CTCCACACTCCTCTTTCCTCA 58.748 52.381 0.00 0.00 0.00 3.86
903 1393 1.974236 CACACTCCTCTTTCCTCACCT 59.026 52.381 0.00 0.00 0.00 4.00
904 1394 3.165875 CACACTCCTCTTTCCTCACCTA 58.834 50.000 0.00 0.00 0.00 3.08
906 1396 4.223923 CACACTCCTCTTTCCTCACCTATT 59.776 45.833 0.00 0.00 0.00 1.73
907 1397 4.223923 ACACTCCTCTTTCCTCACCTATTG 59.776 45.833 0.00 0.00 0.00 1.90
910 1400 3.452627 TCCTCTTTCCTCACCTATTGCTC 59.547 47.826 0.00 0.00 0.00 4.26
911 1401 3.432890 CCTCTTTCCTCACCTATTGCTCC 60.433 52.174 0.00 0.00 0.00 4.70
959 1457 0.179073 CCTGTAGCTTCCATCCCACG 60.179 60.000 0.00 0.00 0.00 4.94
960 1458 0.179073 CTGTAGCTTCCATCCCACGG 60.179 60.000 0.00 0.00 0.00 4.94
990 1488 3.715848 ATTCGACCCTCCCCTCCCC 62.716 68.421 0.00 0.00 0.00 4.81
1032 1530 2.683211 AAATCCAGTCTTGCTTGGGT 57.317 45.000 0.00 0.00 0.00 4.51
1063 1561 2.808315 GCAAGCGGAGATCCTCGA 59.192 61.111 9.14 0.00 0.00 4.04
1144 1647 2.167398 CTTTCCTGGTTCCGGCGAGA 62.167 60.000 9.30 0.12 0.00 4.04
1146 1649 4.148825 CCTGGTTCCGGCGAGAGG 62.149 72.222 9.30 1.59 0.00 3.69
1148 1651 4.689549 TGGTTCCGGCGAGAGGGA 62.690 66.667 9.30 0.00 0.00 4.20
1150 1653 4.516195 GTTCCGGCGAGAGGGAGC 62.516 72.222 9.30 0.00 33.01 4.70
1288 1814 3.056313 GCCCGCTGGATCTTGCAAC 62.056 63.158 0.00 0.00 0.00 4.17
1347 1881 2.383527 CGTTGCTCCTTGCTCGGTC 61.384 63.158 0.00 0.00 43.37 4.79
1380 1914 1.649941 CGGCGTCGTGTTGTTGTTG 60.650 57.895 0.00 0.00 0.00 3.33
1381 1915 1.426223 GGCGTCGTGTTGTTGTTGT 59.574 52.632 0.00 0.00 0.00 3.32
1383 1917 0.904511 GCGTCGTGTTGTTGTTGTTG 59.095 50.000 0.00 0.00 0.00 3.33
1384 1918 1.726571 GCGTCGTGTTGTTGTTGTTGT 60.727 47.619 0.00 0.00 0.00 3.32
1386 1920 2.974536 CGTCGTGTTGTTGTTGTTGTTT 59.025 40.909 0.00 0.00 0.00 2.83
1389 1923 5.284188 CGTCGTGTTGTTGTTGTTGTTTATT 59.716 36.000 0.00 0.00 0.00 1.40
1390 1924 6.454379 GTCGTGTTGTTGTTGTTGTTTATTG 58.546 36.000 0.00 0.00 0.00 1.90
1392 1926 7.270793 GTCGTGTTGTTGTTGTTGTTTATTGTA 59.729 33.333 0.00 0.00 0.00 2.41
1393 1927 7.270793 TCGTGTTGTTGTTGTTGTTTATTGTAC 59.729 33.333 0.00 0.00 0.00 2.90
1394 1928 7.271653 CGTGTTGTTGTTGTTGTTTATTGTACT 59.728 33.333 0.00 0.00 0.00 2.73
1395 1929 8.369588 GTGTTGTTGTTGTTGTTTATTGTACTG 58.630 33.333 0.00 0.00 0.00 2.74
1396 1930 7.062371 TGTTGTTGTTGTTGTTTATTGTACTGC 59.938 33.333 0.00 0.00 0.00 4.40
1410 1944 0.173481 TACTGCCTGCGCTTCTACTG 59.827 55.000 9.73 0.49 35.36 2.74
1411 1945 1.079543 CTGCCTGCGCTTCTACTGT 60.080 57.895 9.73 0.00 35.36 3.55
1469 2003 0.620556 GGGTGGAAGCAGAGGAATGA 59.379 55.000 0.00 0.00 34.77 2.57
1490 2024 1.003476 TGAGCTGCGATCTTGCCAA 60.003 52.632 0.00 0.00 0.00 4.52
1501 2035 3.471680 GATCTTGCCAATAGGACTGACC 58.528 50.000 0.00 0.00 36.89 4.02
1502 2036 1.207089 TCTTGCCAATAGGACTGACCG 59.793 52.381 0.00 0.00 44.74 4.79
1520 2054 0.317269 CGTGTGTGCTCCTTTTGCTG 60.317 55.000 0.00 0.00 0.00 4.41
1599 2134 3.846360 TGGTTTAGTTAAGAGAGAGCGC 58.154 45.455 0.00 0.00 0.00 5.92
1619 2154 3.347216 GCTGGATTGGAAGCTGAGTAAA 58.653 45.455 0.00 0.00 36.47 2.01
1643 2179 7.354751 ACCTTTTTCTGGCAATACTAAAACA 57.645 32.000 0.00 0.00 0.00 2.83
1658 2194 2.736670 AAACAAGGAGAACAGGCAGT 57.263 45.000 0.00 0.00 0.00 4.40
1721 2257 1.002134 ATGCCTTGAACCCCAGACG 60.002 57.895 0.00 0.00 0.00 4.18
1741 2284 3.186817 ACGCATAGCACGAGAGAGTATAC 59.813 47.826 0.00 0.00 0.00 1.47
1742 2285 3.186613 CGCATAGCACGAGAGAGTATACA 59.813 47.826 5.50 0.00 0.00 2.29
1743 2286 4.142795 CGCATAGCACGAGAGAGTATACAT 60.143 45.833 5.50 0.00 0.00 2.29
1744 2287 5.617973 CGCATAGCACGAGAGAGTATACATT 60.618 44.000 5.50 0.00 0.00 2.71
1753 2296 7.116519 CACGAGAGAGTATACATTCAGTCGATA 59.883 40.741 17.32 0.00 0.00 2.92
1776 2319 5.779241 AGATAGGAGAGGAGAGGATACAG 57.221 47.826 0.00 0.00 41.41 2.74
1785 2328 3.957497 AGGAGAGGATACAGACACATGAC 59.043 47.826 0.00 0.00 41.41 3.06
1845 2388 5.414454 TGGTTATGTTTGAGCCAGTGTATTC 59.586 40.000 0.00 0.00 0.00 1.75
1883 2426 1.406219 CTCGTCGTGGCGATTCACAG 61.406 60.000 0.00 0.00 40.29 3.66
1892 2435 3.932710 GTGGCGATTCACAGTTTATCTGA 59.067 43.478 1.79 0.00 46.27 3.27
1951 2494 5.631026 CATAAAGCGCAAGACAATTGTAGT 58.369 37.500 11.95 0.00 43.02 2.73
1955 2498 3.679980 AGCGCAAGACAATTGTAGTGTAG 59.320 43.478 11.95 11.34 43.02 2.74
2028 2571 4.346418 GGCAGAGGATCCTTTCTTCTCATA 59.654 45.833 17.42 0.00 38.65 2.15
2035 2578 7.694093 AGGATCCTTTCTTCTCATAAAACTGT 58.306 34.615 9.02 0.00 0.00 3.55
2046 2589 4.588899 TCATAAAACTGTGTGATGGAGGG 58.411 43.478 0.00 0.00 0.00 4.30
2047 2590 2.292828 AAAACTGTGTGATGGAGGGG 57.707 50.000 0.00 0.00 0.00 4.79
2061 2604 4.249638 TGGAGGGGAATTGTAGGAAATG 57.750 45.455 0.00 0.00 0.00 2.32
2068 2611 5.394553 GGGGAATTGTAGGAAATGCTTTCAG 60.395 44.000 9.75 0.00 41.43 3.02
2086 2629 6.473455 GCTTTCAGTATTTACATCATTGTGGC 59.527 38.462 0.00 0.00 36.53 5.01
2123 2666 3.679389 ACTTCAGAAACTGATTGCCGAT 58.321 40.909 2.30 0.00 40.39 4.18
2125 2668 5.245531 ACTTCAGAAACTGATTGCCGATTA 58.754 37.500 2.30 0.00 40.39 1.75
2142 2685 4.621886 CCGATTATTTCTCTAGCTAACGGC 59.378 45.833 0.00 0.00 42.19 5.68
2159 2913 1.856802 GGCTGTTTCAAACAAGCTGG 58.143 50.000 18.28 4.05 41.61 4.85
2161 2915 1.856802 CTGTTTCAAACAAGCTGGGC 58.143 50.000 4.13 0.00 41.61 5.36
2173 2927 3.582208 ACAAGCTGGGCATTAATTCCAAA 59.418 39.130 6.47 0.00 0.00 3.28
2455 3524 7.445945 ACTAAAACTGACTGCTAACTCTGAAT 58.554 34.615 0.00 0.00 0.00 2.57
2456 3525 7.934120 ACTAAAACTGACTGCTAACTCTGAATT 59.066 33.333 0.00 0.00 0.00 2.17
2510 3579 5.612351 GGTGGATCAGACCCTAAGAATAAC 58.388 45.833 0.00 0.00 0.00 1.89
2678 3747 2.667470 GAGAGTGGGCAGGTCAGTATA 58.333 52.381 0.00 0.00 0.00 1.47
2679 3748 2.362717 GAGAGTGGGCAGGTCAGTATAC 59.637 54.545 0.00 0.00 0.00 1.47
2680 3749 1.413077 GAGTGGGCAGGTCAGTATACC 59.587 57.143 0.00 0.00 40.06 2.73
2681 3750 0.104304 GTGGGCAGGTCAGTATACCG 59.896 60.000 0.00 0.00 44.77 4.02
2682 3751 0.324923 TGGGCAGGTCAGTATACCGT 60.325 55.000 0.00 0.00 44.77 4.83
2683 3752 0.388294 GGGCAGGTCAGTATACCGTC 59.612 60.000 0.00 0.00 44.77 4.79
2705 3780 6.706716 CGTCACTATACACTGAGATCTTCCTA 59.293 42.308 0.00 0.00 0.00 2.94
2717 3792 6.078664 TGAGATCTTCCTAAATACTCCCTCC 58.921 44.000 0.00 0.00 0.00 4.30
2720 3795 4.617593 TCTTCCTAAATACTCCCTCCGTT 58.382 43.478 0.00 0.00 0.00 4.44
2721 3796 4.648307 TCTTCCTAAATACTCCCTCCGTTC 59.352 45.833 0.00 0.00 0.00 3.95
2722 3797 2.954318 TCCTAAATACTCCCTCCGTTCG 59.046 50.000 0.00 0.00 0.00 3.95
2723 3798 2.035576 CCTAAATACTCCCTCCGTTCGG 59.964 54.545 4.74 4.74 0.00 4.30
2724 3799 1.856629 AAATACTCCCTCCGTTCGGA 58.143 50.000 13.34 13.34 0.00 4.55
2726 3801 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
2729 3804 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2730 3805 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2731 3806 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2733 3808 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2734 3809 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2735 3810 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
2736 3811 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
2737 3812 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2738 3813 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2739 3814 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2740 3815 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2741 3816 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2742 3817 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2743 3818 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2744 3819 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
2745 3820 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
2746 3821 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
2747 3822 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
2748 3823 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
2749 3824 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
2750 3825 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
2751 3826 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
2752 3827 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
2753 3828 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
2754 3829 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
2755 3830 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
2756 3831 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
2757 3832 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
2758 3833 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
2759 3834 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
2788 3863 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
2789 3864 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
2790 3865 8.138712 AGTTCTAGATACATCCATTTTCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
2791 3866 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
2793 3868 8.138074 TCTAGATACATCCATTTTCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
2795 3870 7.782049 AGATACATCCATTTTCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
2796 3871 8.258007 AGATACATCCATTTTCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
2798 3873 7.687941 ACATCCATTTTCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
2799 3874 7.752695 ACATCCATTTTCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
2800 3875 6.737254 TCCATTTTCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
2801 3876 6.234920 TCCATTTTCGAGACAAGTAATTCCA 58.765 36.000 0.00 0.00 0.00 3.53
2802 3877 6.712998 TCCATTTTCGAGACAAGTAATTCCAA 59.287 34.615 0.00 0.00 0.00 3.53
2871 4116 7.308229 GCTGAAATATTCACCTCTTATGCGAAT 60.308 37.037 0.00 0.00 35.46 3.34
3638 7355 2.861462 TTGGCGTTGTTTTCCTTGAG 57.139 45.000 0.00 0.00 0.00 3.02
3680 7397 0.034380 TCGACAACACCAAACCCCAA 60.034 50.000 0.00 0.00 0.00 4.12
3823 7540 3.327757 TCTTAGTGAAACACCATCCTGCT 59.672 43.478 0.00 0.00 41.43 4.24
3862 7579 9.226345 GACTGAAAATGTTCTTTTCTGTTACTG 57.774 33.333 17.96 0.00 44.70 2.74
3892 7609 0.756903 ACCGTCTGTAACCAGTTGCT 59.243 50.000 0.41 0.00 39.82 3.91
3896 7613 3.554337 CCGTCTGTAACCAGTTGCTACTT 60.554 47.826 0.00 0.00 39.82 2.24
3948 7665 9.638239 TGCTCATTTTGACTTTGGATAATTAAC 57.362 29.630 0.00 0.00 0.00 2.01
4112 7829 2.668550 GCCACAACCCGTCCTCAC 60.669 66.667 0.00 0.00 0.00 3.51
4199 7916 3.186909 TCAACATACTCGGAGCAATTCG 58.813 45.455 4.58 0.00 0.00 3.34
4208 7925 1.079405 GAGCAATTCGTCGACCCCA 60.079 57.895 10.58 0.00 0.00 4.96
4553 8270 1.709203 CAGTTCTCTTTCACGACGTCG 59.291 52.381 34.58 34.58 46.33 5.12
4562 8279 1.062685 CACGACGTCGCTCTAGCAT 59.937 57.895 35.92 12.80 44.43 3.79
4805 8522 1.414181 GGAGCCTACAAGATGCAGCTA 59.586 52.381 4.15 0.00 0.00 3.32
4863 8580 4.057428 GAGCTGCGTCTGTCGGGT 62.057 66.667 0.00 0.00 40.26 5.28
4927 8649 1.233019 CTGCACCTGTGTTCTGGAAG 58.767 55.000 0.00 0.00 36.65 3.46
4932 8654 3.070018 CACCTGTGTTCTGGAAGTGATC 58.930 50.000 0.00 0.00 36.65 2.92
4933 8655 2.705658 ACCTGTGTTCTGGAAGTGATCA 59.294 45.455 0.00 0.00 36.65 2.92
4934 8656 3.328931 ACCTGTGTTCTGGAAGTGATCAT 59.671 43.478 0.00 0.00 36.65 2.45
5077 8800 8.495949 CGGTCATTTATTTGTATTAGCTTCGAT 58.504 33.333 0.00 0.00 0.00 3.59
5196 8919 3.392882 CTTTTGTTCCTGGAAACCATGC 58.607 45.455 11.40 0.00 30.82 4.06
5219 8942 7.895759 TGCTGTTCATGATGTATATACTGCTA 58.104 34.615 18.21 7.56 32.43 3.49
5237 8960 5.242393 ACTGCTAATTTTTGTCAGTCATGCT 59.758 36.000 0.00 0.00 33.16 3.79
5254 8977 2.742348 TGCTCCCATCTTGCAAATCAT 58.258 42.857 0.00 0.00 33.48 2.45
5276 8999 8.633075 TCATCTCAAAACATTTTCAAACTGAC 57.367 30.769 0.00 0.00 0.00 3.51
5280 9003 3.791973 AACATTTTCAAACTGACCGCA 57.208 38.095 0.00 0.00 0.00 5.69
5309 9032 1.000955 GGGAGCGACGACCATGAATAT 59.999 52.381 0.00 0.00 0.00 1.28
5329 9052 8.950210 TGAATATCATGGAAGAAAACTTCAGTC 58.050 33.333 11.21 1.06 35.19 3.51
5330 9053 8.868522 AATATCATGGAAGAAAACTTCAGTCA 57.131 30.769 11.21 2.26 35.19 3.41
5331 9054 6.814506 ATCATGGAAGAAAACTTCAGTCAG 57.185 37.500 11.21 0.00 35.19 3.51
5332 9055 5.684704 TCATGGAAGAAAACTTCAGTCAGT 58.315 37.500 11.21 0.00 35.19 3.41
5351 9074 2.270352 TGGTAACAGGTGAGCAAAGG 57.730 50.000 0.00 0.00 46.17 3.11
5423 9146 1.531423 ACAGCAAGCATCTTCCTGTG 58.469 50.000 2.64 0.00 35.60 3.66
5478 9201 3.073650 AGAAACAATGAAGCAGAGAGGGT 59.926 43.478 0.00 0.00 0.00 4.34
5484 9207 5.104193 ACAATGAAGCAGAGAGGGTAATGAT 60.104 40.000 0.00 0.00 0.00 2.45
5486 9209 5.798125 TGAAGCAGAGAGGGTAATGATAG 57.202 43.478 0.00 0.00 0.00 2.08
5512 9235 2.287368 CGTGCGTGGTGCTACTATGATA 60.287 50.000 0.00 0.00 46.63 2.15
5518 9241 5.345202 GCGTGGTGCTACTATGATAATACAC 59.655 44.000 0.00 0.00 41.73 2.90
5524 9247 9.326413 GGTGCTACTATGATAATACACAACTTT 57.674 33.333 0.00 0.00 0.00 2.66
5563 9286 1.777819 CGCTGTGTCTTCTTCGCTG 59.222 57.895 0.00 0.00 0.00 5.18
5645 9368 1.090052 GGTCCATCTTGTACCGCAGC 61.090 60.000 0.00 0.00 0.00 5.25
5663 9386 1.298413 CTCGGCGTAGTCCATGACG 60.298 63.158 6.85 0.00 46.76 4.35
5720 9443 0.828022 CGCCCAGGTAGGTTATGTGA 59.172 55.000 0.00 0.00 34.66 3.58
5723 9446 2.706190 GCCCAGGTAGGTTATGTGATCT 59.294 50.000 0.00 0.00 34.66 2.75
5758 9481 0.972134 CTCACAGACCTGAGAAGGCA 59.028 55.000 3.76 0.00 40.28 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 91 4.057428 AGGTGTCTCTGCGTCGCC 62.057 66.667 15.88 0.00 0.00 5.54
88 96 2.807045 GCGTCAGGTGTCTCTGCG 60.807 66.667 0.00 0.00 37.35 5.18
92 100 1.154188 GTCTCGCGTCAGGTGTCTC 60.154 63.158 5.77 0.00 0.00 3.36
110 118 1.022735 GGCCATCTGCAGAATCAGTG 58.977 55.000 22.50 13.83 43.89 3.66
113 121 0.745486 CGTGGCCATCTGCAGAATCA 60.745 55.000 22.50 13.31 43.89 2.57
236 272 1.198713 TCAATGGAGGTGGAGAGAGC 58.801 55.000 0.00 0.00 0.00 4.09
269 354 3.613030 GGGGATTAAACTAGTCGCCAAA 58.387 45.455 9.07 0.00 43.86 3.28
272 357 1.539712 CCGGGGATTAAACTAGTCGCC 60.540 57.143 0.00 0.00 41.92 5.54
275 360 2.401568 TCCCCGGGGATTAAACTAGTC 58.598 52.381 39.67 0.00 39.76 2.59
305 416 3.479269 GCTTTGTCGTCTCCCGCG 61.479 66.667 0.00 0.00 36.19 6.46
306 417 3.119096 GGCTTTGTCGTCTCCCGC 61.119 66.667 0.00 0.00 36.19 6.13
307 418 2.809601 CGGCTTTGTCGTCTCCCG 60.810 66.667 0.00 0.00 38.13 5.14
308 419 1.737008 GTCGGCTTTGTCGTCTCCC 60.737 63.158 0.00 0.00 30.45 4.30
357 469 0.543749 CTCTGGAAGAAGGGCCGAAT 59.456 55.000 0.00 0.00 46.34 3.34
377 489 6.270231 TGGAGAGAATGATGATGATGATGTCT 59.730 38.462 0.00 0.00 0.00 3.41
460 797 9.638239 ATTGTCACGCATCTTTAATTTATTTGT 57.362 25.926 0.00 0.00 0.00 2.83
477 814 2.864343 GTGGTGGTAGATATTGTCACGC 59.136 50.000 0.00 0.00 0.00 5.34
486 823 2.303600 GTTGTGGTGGTGGTGGTAGATA 59.696 50.000 0.00 0.00 0.00 1.98
505 842 3.426787 TCACATACCCATCCGTTTGTT 57.573 42.857 0.00 0.00 0.00 2.83
506 843 3.078837 GTTCACATACCCATCCGTTTGT 58.921 45.455 0.00 0.00 0.00 2.83
507 844 2.095213 CGTTCACATACCCATCCGTTTG 59.905 50.000 0.00 0.00 0.00 2.93
532 869 0.179000 CCTCCTCATGTGTGGGTAGC 59.821 60.000 0.00 0.00 0.00 3.58
536 873 1.275666 TGTACCTCCTCATGTGTGGG 58.724 55.000 9.70 6.44 0.00 4.61
541 878 5.663106 ACAGATTGTATGTACCTCCTCATGT 59.337 40.000 0.00 0.00 0.00 3.21
547 884 3.068307 AGCGACAGATTGTATGTACCTCC 59.932 47.826 0.00 0.00 0.00 4.30
549 886 3.068307 GGAGCGACAGATTGTATGTACCT 59.932 47.826 0.00 0.00 0.00 3.08
550 887 3.181479 TGGAGCGACAGATTGTATGTACC 60.181 47.826 0.00 0.00 0.00 3.34
561 898 4.024302 CGTACTATTACATGGAGCGACAGA 60.024 45.833 0.00 0.00 0.00 3.41
562 899 4.219802 CGTACTATTACATGGAGCGACAG 58.780 47.826 0.00 0.00 0.00 3.51
574 911 2.351726 ACACCGTCGGACGTACTATTAC 59.648 50.000 26.72 0.00 40.58 1.89
577 914 0.729116 CACACCGTCGGACGTACTAT 59.271 55.000 26.72 6.95 40.58 2.12
580 917 0.317770 TTTCACACCGTCGGACGTAC 60.318 55.000 26.72 0.00 40.58 3.67
584 921 0.313043 TCTCTTTCACACCGTCGGAC 59.687 55.000 20.51 0.00 0.00 4.79
585 922 1.034356 TTCTCTTTCACACCGTCGGA 58.966 50.000 20.51 0.00 0.00 4.55
586 923 1.860676 TTTCTCTTTCACACCGTCGG 58.139 50.000 10.48 10.48 0.00 4.79
587 924 2.864343 AGTTTTCTCTTTCACACCGTCG 59.136 45.455 0.00 0.00 0.00 5.12
588 925 5.048507 ACTAGTTTTCTCTTTCACACCGTC 58.951 41.667 0.00 0.00 0.00 4.79
590 927 6.214399 AGTACTAGTTTTCTCTTTCACACCG 58.786 40.000 0.00 0.00 0.00 4.94
591 928 6.645827 GGAGTACTAGTTTTCTCTTTCACACC 59.354 42.308 0.00 0.00 0.00 4.16
609 946 6.936968 ATAAAAGTGAACAGAGGGAGTACT 57.063 37.500 0.00 0.00 0.00 2.73
636 973 7.862372 GCATGTTGTCTGAAATGTCTTTAAAGA 59.138 33.333 13.99 13.99 0.00 2.52
637 974 7.648908 TGCATGTTGTCTGAAATGTCTTTAAAG 59.351 33.333 9.04 9.04 0.00 1.85
638 975 7.487484 TGCATGTTGTCTGAAATGTCTTTAAA 58.513 30.769 0.00 0.00 0.00 1.52
639 976 7.036996 TGCATGTTGTCTGAAATGTCTTTAA 57.963 32.000 0.00 0.00 0.00 1.52
640 977 6.631971 TGCATGTTGTCTGAAATGTCTTTA 57.368 33.333 0.00 0.00 0.00 1.85
641 978 5.518848 TGCATGTTGTCTGAAATGTCTTT 57.481 34.783 0.00 0.00 0.00 2.52
642 979 5.518848 TTGCATGTTGTCTGAAATGTCTT 57.481 34.783 0.00 0.00 0.00 3.01
643 980 5.518848 TTTGCATGTTGTCTGAAATGTCT 57.481 34.783 0.00 0.00 0.00 3.41
644 981 4.149396 GCTTTGCATGTTGTCTGAAATGTC 59.851 41.667 0.00 0.00 0.00 3.06
645 982 4.053295 GCTTTGCATGTTGTCTGAAATGT 58.947 39.130 0.00 0.00 0.00 2.71
646 983 4.052608 TGCTTTGCATGTTGTCTGAAATG 58.947 39.130 0.00 0.00 31.71 2.32
647 984 4.304110 CTGCTTTGCATGTTGTCTGAAAT 58.696 39.130 0.00 0.00 38.13 2.17
648 985 3.708890 CTGCTTTGCATGTTGTCTGAAA 58.291 40.909 0.00 0.00 38.13 2.69
649 986 2.544277 GCTGCTTTGCATGTTGTCTGAA 60.544 45.455 0.00 0.00 38.13 3.02
650 987 1.001048 GCTGCTTTGCATGTTGTCTGA 60.001 47.619 0.00 0.00 38.13 3.27
651 988 1.415374 GCTGCTTTGCATGTTGTCTG 58.585 50.000 0.00 0.00 38.13 3.51
652 989 0.316204 GGCTGCTTTGCATGTTGTCT 59.684 50.000 0.00 0.00 38.13 3.41
653 990 0.316204 AGGCTGCTTTGCATGTTGTC 59.684 50.000 0.00 0.00 38.13 3.18
654 991 1.619654 TAGGCTGCTTTGCATGTTGT 58.380 45.000 0.00 0.00 38.13 3.32
655 992 2.953466 ATAGGCTGCTTTGCATGTTG 57.047 45.000 0.00 0.00 38.13 3.33
656 993 3.967332 AAATAGGCTGCTTTGCATGTT 57.033 38.095 0.00 0.00 38.13 2.71
657 994 3.967332 AAAATAGGCTGCTTTGCATGT 57.033 38.095 0.00 0.00 38.13 3.21
658 995 5.413499 ACTAAAAATAGGCTGCTTTGCATG 58.587 37.500 0.00 0.00 38.13 4.06
659 996 5.665916 ACTAAAAATAGGCTGCTTTGCAT 57.334 34.783 0.00 0.00 38.13 3.96
660 997 5.221422 ACAACTAAAAATAGGCTGCTTTGCA 60.221 36.000 0.00 0.00 36.92 4.08
661 998 5.230182 ACAACTAAAAATAGGCTGCTTTGC 58.770 37.500 0.00 0.00 0.00 3.68
662 999 6.583806 CAGACAACTAAAAATAGGCTGCTTTG 59.416 38.462 0.00 0.00 0.00 2.77
663 1000 6.490040 TCAGACAACTAAAAATAGGCTGCTTT 59.510 34.615 0.00 0.00 0.00 3.51
664 1001 6.003950 TCAGACAACTAAAAATAGGCTGCTT 58.996 36.000 0.00 0.00 0.00 3.91
665 1002 5.560724 TCAGACAACTAAAAATAGGCTGCT 58.439 37.500 0.00 0.00 0.00 4.24
666 1003 5.880054 TCAGACAACTAAAAATAGGCTGC 57.120 39.130 0.00 0.00 0.00 5.25
667 1004 8.514594 TCATTTCAGACAACTAAAAATAGGCTG 58.485 33.333 0.00 0.00 0.00 4.85
668 1005 8.515414 GTCATTTCAGACAACTAAAAATAGGCT 58.485 33.333 0.00 0.00 38.40 4.58
669 1006 8.515414 AGTCATTTCAGACAACTAAAAATAGGC 58.485 33.333 0.00 0.00 40.98 3.93
679 1016 9.640963 GTACAGTATAAGTCATTTCAGACAACT 57.359 33.333 0.00 0.00 40.98 3.16
680 1017 8.870879 GGTACAGTATAAGTCATTTCAGACAAC 58.129 37.037 0.00 0.00 40.98 3.32
681 1018 7.758076 CGGTACAGTATAAGTCATTTCAGACAA 59.242 37.037 0.00 0.00 40.98 3.18
682 1019 7.255569 CGGTACAGTATAAGTCATTTCAGACA 58.744 38.462 0.00 0.00 40.98 3.41
683 1020 6.198591 GCGGTACAGTATAAGTCATTTCAGAC 59.801 42.308 0.00 0.00 38.81 3.51
684 1021 6.270815 GCGGTACAGTATAAGTCATTTCAGA 58.729 40.000 0.00 0.00 0.00 3.27
685 1022 5.462398 GGCGGTACAGTATAAGTCATTTCAG 59.538 44.000 0.00 0.00 0.00 3.02
686 1023 5.128171 AGGCGGTACAGTATAAGTCATTTCA 59.872 40.000 0.00 0.00 0.00 2.69
687 1024 5.462398 CAGGCGGTACAGTATAAGTCATTTC 59.538 44.000 0.00 0.00 0.00 2.17
688 1025 5.357257 CAGGCGGTACAGTATAAGTCATTT 58.643 41.667 0.00 0.00 0.00 2.32
689 1026 4.739735 GCAGGCGGTACAGTATAAGTCATT 60.740 45.833 0.00 0.00 0.00 2.57
690 1027 3.243771 GCAGGCGGTACAGTATAAGTCAT 60.244 47.826 0.00 0.00 0.00 3.06
691 1028 2.100252 GCAGGCGGTACAGTATAAGTCA 59.900 50.000 0.00 0.00 0.00 3.41
692 1029 2.545322 GGCAGGCGGTACAGTATAAGTC 60.545 54.545 0.00 0.00 0.00 3.01
693 1030 1.411612 GGCAGGCGGTACAGTATAAGT 59.588 52.381 0.00 0.00 0.00 2.24
694 1031 1.687123 AGGCAGGCGGTACAGTATAAG 59.313 52.381 0.00 0.00 0.00 1.73
695 1032 1.411246 CAGGCAGGCGGTACAGTATAA 59.589 52.381 0.00 0.00 0.00 0.98
696 1033 1.037493 CAGGCAGGCGGTACAGTATA 58.963 55.000 0.00 0.00 0.00 1.47
697 1034 1.686325 CCAGGCAGGCGGTACAGTAT 61.686 60.000 0.00 0.00 0.00 2.12
716 1053 1.337703 TCAAATTCACACTGCCACTGC 59.662 47.619 0.00 0.00 38.26 4.40
717 1054 3.713858 TTCAAATTCACACTGCCACTG 57.286 42.857 0.00 0.00 0.00 3.66
718 1055 4.099881 ACAATTCAAATTCACACTGCCACT 59.900 37.500 0.00 0.00 0.00 4.00
719 1056 4.209703 CACAATTCAAATTCACACTGCCAC 59.790 41.667 0.00 0.00 0.00 5.01
720 1057 4.370049 CACAATTCAAATTCACACTGCCA 58.630 39.130 0.00 0.00 0.00 4.92
721 1058 3.742369 CCACAATTCAAATTCACACTGCC 59.258 43.478 0.00 0.00 0.00 4.85
722 1059 4.619973 TCCACAATTCAAATTCACACTGC 58.380 39.130 0.00 0.00 0.00 4.40
756 1093 0.685458 GGCAGGTGAGGCATTGGAAT 60.685 55.000 0.00 0.00 0.00 3.01
759 1096 3.136123 CGGCAGGTGAGGCATTGG 61.136 66.667 0.00 0.00 0.00 3.16
797 1150 1.467678 TTGGGGGCACAATCCGTTTG 61.468 55.000 0.00 0.00 41.36 2.93
900 1390 1.348775 GCTGGGAGGGAGCAATAGGT 61.349 60.000 0.00 0.00 36.40 3.08
903 1393 1.004758 AGGCTGGGAGGGAGCAATA 59.995 57.895 0.00 0.00 38.27 1.90
904 1394 2.286732 AGGCTGGGAGGGAGCAAT 60.287 61.111 0.00 0.00 38.27 3.56
906 1396 3.647921 ATGAGGCTGGGAGGGAGCA 62.648 63.158 0.00 0.00 38.27 4.26
907 1397 2.771762 ATGAGGCTGGGAGGGAGC 60.772 66.667 0.00 0.00 35.57 4.70
910 1400 1.225704 GAACATGAGGCTGGGAGGG 59.774 63.158 0.00 0.00 0.00 4.30
911 1401 0.622665 AAGAACATGAGGCTGGGAGG 59.377 55.000 0.00 0.00 0.00 4.30
959 1457 3.074369 CGAATTGGGGTTGGGGCC 61.074 66.667 0.00 0.00 0.00 5.80
960 1458 2.036572 TCGAATTGGGGTTGGGGC 59.963 61.111 0.00 0.00 0.00 5.80
965 1463 1.689412 GGAGGGTCGAATTGGGGTT 59.311 57.895 0.00 0.00 0.00 4.11
966 1464 2.306384 GGGAGGGTCGAATTGGGGT 61.306 63.158 0.00 0.00 0.00 4.95
996 1494 1.568118 TTTTTAGGCGGGGGAGAGGG 61.568 60.000 0.00 0.00 0.00 4.30
997 1495 0.551396 ATTTTTAGGCGGGGGAGAGG 59.449 55.000 0.00 0.00 0.00 3.69
998 1496 1.477014 GGATTTTTAGGCGGGGGAGAG 60.477 57.143 0.00 0.00 0.00 3.20
999 1497 0.549469 GGATTTTTAGGCGGGGGAGA 59.451 55.000 0.00 0.00 0.00 3.71
1000 1498 0.257616 TGGATTTTTAGGCGGGGGAG 59.742 55.000 0.00 0.00 0.00 4.30
1001 1499 0.257616 CTGGATTTTTAGGCGGGGGA 59.742 55.000 0.00 0.00 0.00 4.81
1288 1814 1.380380 GGTGGGGAGGGATTTGCAG 60.380 63.158 0.00 0.00 0.00 4.41
1380 1914 3.488489 CGCAGGCAGTACAATAAACAAC 58.512 45.455 0.00 0.00 0.00 3.32
1381 1915 2.095466 GCGCAGGCAGTACAATAAACAA 60.095 45.455 0.30 0.00 39.62 2.83
1383 1917 1.737793 AGCGCAGGCAGTACAATAAAC 59.262 47.619 11.47 0.00 43.41 2.01
1384 1918 2.107950 AGCGCAGGCAGTACAATAAA 57.892 45.000 11.47 0.00 43.41 1.40
1386 1920 1.207089 AGAAGCGCAGGCAGTACAATA 59.793 47.619 11.47 0.00 43.41 1.90
1389 1923 0.108804 GTAGAAGCGCAGGCAGTACA 60.109 55.000 11.47 0.00 43.41 2.90
1390 1924 0.173708 AGTAGAAGCGCAGGCAGTAC 59.826 55.000 11.47 2.17 43.41 2.73
1392 1926 1.079543 CAGTAGAAGCGCAGGCAGT 60.080 57.895 11.47 0.00 43.41 4.40
1393 1927 0.671781 AACAGTAGAAGCGCAGGCAG 60.672 55.000 11.47 0.00 43.41 4.85
1394 1928 0.950555 CAACAGTAGAAGCGCAGGCA 60.951 55.000 11.47 0.00 43.41 4.75
1395 1929 1.790387 CAACAGTAGAAGCGCAGGC 59.210 57.895 11.47 0.00 40.37 4.85
1396 1930 0.671781 AGCAACAGTAGAAGCGCAGG 60.672 55.000 11.47 0.00 0.00 4.85
1410 1944 1.412387 GCAGTAAGCAAGCAAGCAAC 58.588 50.000 3.19 1.31 44.79 4.17
1411 1945 0.040157 CGCAGTAAGCAAGCAAGCAA 60.040 50.000 3.19 0.00 46.13 3.91
1469 2003 1.814586 GCAAGATCGCAGCTCAGCT 60.815 57.895 0.00 0.00 40.77 4.24
1490 2024 0.246635 GCACACACGGTCAGTCCTAT 59.753 55.000 0.00 0.00 0.00 2.57
1501 2035 0.317269 CAGCAAAAGGAGCACACACG 60.317 55.000 0.00 0.00 0.00 4.49
1502 2036 0.595825 GCAGCAAAAGGAGCACACAC 60.596 55.000 0.00 0.00 0.00 3.82
1520 2054 2.935201 CCATCTCTTGCTCACTAAGTGC 59.065 50.000 0.00 0.00 37.26 4.40
1557 2091 4.034510 CCAGAGCTAAAAACAATCCTAGCG 59.965 45.833 0.00 0.00 41.33 4.26
1599 2134 3.691609 GGTTTACTCAGCTTCCAATCCAG 59.308 47.826 0.00 0.00 0.00 3.86
1619 2154 7.354751 TGTTTTAGTATTGCCAGAAAAAGGT 57.645 32.000 0.00 0.00 0.00 3.50
1643 2179 0.615850 GCCTACTGCCTGTTCTCCTT 59.384 55.000 0.00 0.00 0.00 3.36
1658 2194 1.806496 ACCCATGCATAGACAGCCTA 58.194 50.000 0.00 0.00 0.00 3.93
1721 2257 4.750952 TGTATACTCTCTCGTGCTATGC 57.249 45.455 4.17 0.00 0.00 3.14
1741 2284 6.657117 TCCTCTCCTATCTTATCGACTGAATG 59.343 42.308 0.00 0.00 0.00 2.67
1742 2285 6.785076 TCCTCTCCTATCTTATCGACTGAAT 58.215 40.000 0.00 0.00 0.00 2.57
1743 2286 6.043358 TCTCCTCTCCTATCTTATCGACTGAA 59.957 42.308 0.00 0.00 0.00 3.02
1744 2287 5.544562 TCTCCTCTCCTATCTTATCGACTGA 59.455 44.000 0.00 0.00 0.00 3.41
1753 2296 5.855040 TCTGTATCCTCTCCTCTCCTATCTT 59.145 44.000 0.00 0.00 0.00 2.40
1785 2328 1.745087 AGTATTGAAATGGCAGCCACG 59.255 47.619 19.10 0.00 35.80 4.94
1835 2378 2.223829 CCTAGCTGGACGAATACACTGG 60.224 54.545 0.00 0.00 38.35 4.00
1883 2426 5.819901 CCAAGGAGAGGAATGTCAGATAAAC 59.180 44.000 0.00 0.00 0.00 2.01
1892 2435 2.715295 CCCCCAAGGAGAGGAATGT 58.285 57.895 0.00 0.00 38.24 2.71
1955 2498 7.713073 CAGGGTCCTCTTAGTATCAATCTTTTC 59.287 40.741 0.00 0.00 0.00 2.29
2028 2571 1.780309 TCCCCTCCATCACACAGTTTT 59.220 47.619 0.00 0.00 0.00 2.43
2035 2578 2.509548 CCTACAATTCCCCTCCATCACA 59.490 50.000 0.00 0.00 0.00 3.58
2061 2604 6.473455 GCCACAATGATGTAAATACTGAAAGC 59.527 38.462 0.00 0.00 37.82 3.51
2068 2611 6.275335 AGCATTGCCACAATGATGTAAATAC 58.725 36.000 21.26 3.37 37.82 1.89
2086 2629 4.756642 TCTGAAGTAACACCAGAAGCATTG 59.243 41.667 0.00 0.00 34.38 2.82
2142 2685 1.136695 TGCCCAGCTTGTTTGAAACAG 59.863 47.619 10.91 6.94 43.27 3.16
2159 2913 6.775594 AGTAGAAGGTTTGGAATTAATGCC 57.224 37.500 5.38 5.38 0.00 4.40
2173 2927 5.242795 ACAGCCACATTTAAGTAGAAGGT 57.757 39.130 0.00 0.00 0.00 3.50
2367 3436 4.461081 AGTGGTTCACTCTTAGAGCACTAG 59.539 45.833 14.65 0.00 45.70 2.57
2427 3496 7.013942 TCAGAGTTAGCAGTCAGTTTTAGTACA 59.986 37.037 0.00 0.00 0.00 2.90
2455 3524 8.408601 GCCTCAATTTATCTGAGCAGAAAATAA 58.591 33.333 4.06 0.00 41.36 1.40
2456 3525 7.776969 AGCCTCAATTTATCTGAGCAGAAAATA 59.223 33.333 4.06 0.00 41.36 1.40
2510 3579 0.687354 CCCGAGGGATGGTTAGATGG 59.313 60.000 0.84 0.00 37.50 3.51
2591 3660 5.428496 TGCAATCTTGTCTGAAGTTCTTG 57.572 39.130 4.17 0.00 0.00 3.02
2678 3747 4.783055 AGATCTCAGTGTATAGTGACGGT 58.217 43.478 0.00 0.00 32.90 4.83
2679 3748 5.278071 GGAAGATCTCAGTGTATAGTGACGG 60.278 48.000 0.00 0.00 32.90 4.79
2680 3749 5.529430 AGGAAGATCTCAGTGTATAGTGACG 59.471 44.000 0.00 0.00 32.90 4.35
2681 3750 6.952773 AGGAAGATCTCAGTGTATAGTGAC 57.047 41.667 0.00 0.00 32.90 3.67
2682 3751 9.647918 ATTTAGGAAGATCTCAGTGTATAGTGA 57.352 33.333 0.00 0.00 35.08 3.41
2705 3780 1.856629 TCCGAACGGAGGGAGTATTT 58.143 50.000 12.04 0.00 39.76 1.40
2717 3792 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2720 3795 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
2721 3796 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
2722 3797 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
2723 3798 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
2724 3799 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
2726 3801 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
2729 3804 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
2730 3805 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
2731 3806 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
2733 3808 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
2734 3809 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
2735 3810 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
2736 3811 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
2763 3838 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
2765 3840 7.921214 TGTCTCGAAAATGGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
2766 3841 8.007405 TGTCTCGAAAATGGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
2768 3843 7.923344 ACTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
2770 3845 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
2774 3849 7.148239 GGAATTACTTGTCTCGAAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
2778 3853 6.494893 TGGAATTACTTGTCTCGAAAATGG 57.505 37.500 0.00 0.00 0.00 3.16
2782 3857 5.049954 CCGTTTGGAATTACTTGTCTCGAAA 60.050 40.000 0.00 0.00 37.49 3.46
2785 3860 3.991773 TCCGTTTGGAATTACTTGTCTCG 59.008 43.478 0.00 0.00 42.85 4.04
2787 3862 4.324267 CCTCCGTTTGGAATTACTTGTCT 58.676 43.478 0.00 0.00 45.87 3.41
2788 3863 3.439129 CCCTCCGTTTGGAATTACTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
2789 3864 3.073356 TCCCTCCGTTTGGAATTACTTGT 59.927 43.478 0.00 0.00 45.87 3.16
2790 3865 3.681593 TCCCTCCGTTTGGAATTACTTG 58.318 45.455 0.00 0.00 45.87 3.16
2791 3866 3.329814 ACTCCCTCCGTTTGGAATTACTT 59.670 43.478 0.00 0.00 45.87 2.24
2793 3868 3.345508 ACTCCCTCCGTTTGGAATTAC 57.654 47.619 0.00 0.00 45.87 1.89
2795 3870 2.640826 TGTACTCCCTCCGTTTGGAATT 59.359 45.455 0.00 0.00 45.87 2.17
2796 3871 2.027469 GTGTACTCCCTCCGTTTGGAAT 60.027 50.000 0.00 0.00 45.87 3.01
2798 3873 0.971386 GTGTACTCCCTCCGTTTGGA 59.029 55.000 0.00 0.00 43.88 3.53
2799 3874 0.974383 AGTGTACTCCCTCCGTTTGG 59.026 55.000 0.00 0.00 0.00 3.28
2800 3875 1.893801 AGAGTGTACTCCCTCCGTTTG 59.106 52.381 8.34 0.00 43.88 2.93
2801 3876 2.305858 AGAGTGTACTCCCTCCGTTT 57.694 50.000 8.34 0.00 43.88 3.60
2802 3877 3.087781 GTTAGAGTGTACTCCCTCCGTT 58.912 50.000 8.34 0.00 43.88 4.44
3530 7247 1.531149 GTTCCCATCACACGTGTTGAG 59.469 52.381 20.79 7.03 33.36 3.02
3638 7355 0.099436 CTTTGCGCCCTGTAATCAGC 59.901 55.000 4.18 0.00 40.09 4.26
3680 7397 0.111253 CCACCAGGTTTTGCTCTCCT 59.889 55.000 0.00 0.00 0.00 3.69
3736 7453 6.372659 AGAAAATTATCAGGTATAGCATGCCG 59.627 38.462 15.66 0.00 40.30 5.69
3741 7458 6.600388 TGGCAGAAAATTATCAGGTATAGCA 58.400 36.000 4.48 0.00 0.00 3.49
3823 7540 5.945784 ACATTTTCAGTCAATGGCTTAGCTA 59.054 36.000 3.59 0.00 36.15 3.32
3862 7579 5.409214 TGGTTACAGACGGTAATTTTAGCAC 59.591 40.000 1.45 0.00 43.50 4.40
3896 7613 9.120538 AGAAGTTGTCTTTTGCTAATAAACTGA 57.879 29.630 0.00 0.00 29.66 3.41
3948 7665 2.461903 CTGCAGATCAGACGAGATGTG 58.538 52.381 8.42 0.00 45.72 3.21
4112 7829 4.118410 GAGCAGTGACAACATCTCCTATG 58.882 47.826 0.00 0.00 0.00 2.23
4208 7925 1.341080 CACCAACATTTCTGGCCCTT 58.659 50.000 0.00 0.00 37.48 3.95
4259 7976 2.626743 CCTGGGAGAATGATGATTTGGC 59.373 50.000 0.00 0.00 0.00 4.52
4448 8165 0.029300 CCCACATTTTAGCATCCGCG 59.971 55.000 0.00 0.00 45.49 6.46
4553 8270 1.068250 GTCGACCCCATGCTAGAGC 59.932 63.158 3.51 0.00 42.50 4.09
4562 8279 2.029964 GCAAACTCGTCGACCCCA 59.970 61.111 10.58 0.00 0.00 4.96
4805 8522 3.308188 CCCGTTCCCTTTCCTACATTTCT 60.308 47.826 0.00 0.00 0.00 2.52
4863 8580 4.578928 GTGTAACTGCAGAAAAAGGAAGGA 59.421 41.667 23.35 0.00 0.00 3.36
4945 8667 1.704628 TCCATCAGAAGAAACTGCCCA 59.295 47.619 0.00 0.00 37.75 5.36
4946 8668 2.496899 TCCATCAGAAGAAACTGCCC 57.503 50.000 0.00 0.00 37.75 5.36
5077 8800 8.029522 CACTAAGATACAAGCAGAAGAAGTACA 58.970 37.037 0.00 0.00 0.00 2.90
5081 8804 5.005203 CGCACTAAGATACAAGCAGAAGAAG 59.995 44.000 0.00 0.00 0.00 2.85
5082 8805 4.864806 CGCACTAAGATACAAGCAGAAGAA 59.135 41.667 0.00 0.00 0.00 2.52
5083 8806 4.157840 TCGCACTAAGATACAAGCAGAAGA 59.842 41.667 0.00 0.00 0.00 2.87
5219 8942 3.896888 TGGGAGCATGACTGACAAAAATT 59.103 39.130 0.00 0.00 0.00 1.82
5237 8960 4.239428 TGAGATGATTTGCAAGATGGGA 57.761 40.909 0.00 0.00 0.00 4.37
5254 8977 6.033341 CGGTCAGTTTGAAAATGTTTTGAGA 58.967 36.000 5.23 0.00 0.00 3.27
5280 9003 2.173669 CGTCGCTCCCGCAATCAAT 61.174 57.895 0.00 0.00 35.30 2.57
5288 9011 2.629050 ATTCATGGTCGTCGCTCCCG 62.629 60.000 0.00 0.00 0.00 5.14
5319 9042 4.080526 ACCTGTTACCACTGACTGAAGTTT 60.081 41.667 0.00 0.00 0.00 2.66
5329 9052 2.254546 TTGCTCACCTGTTACCACTG 57.745 50.000 0.00 0.00 0.00 3.66
5330 9053 2.487265 CCTTTGCTCACCTGTTACCACT 60.487 50.000 0.00 0.00 0.00 4.00
5331 9054 1.880027 CCTTTGCTCACCTGTTACCAC 59.120 52.381 0.00 0.00 0.00 4.16
5332 9055 1.202879 CCCTTTGCTCACCTGTTACCA 60.203 52.381 0.00 0.00 0.00 3.25
5351 9074 5.801380 TCCAGTACAAAATACCTCTGTTCC 58.199 41.667 0.00 0.00 0.00 3.62
5423 9146 0.743345 GGATAACACCACCACGCTCC 60.743 60.000 0.00 0.00 0.00 4.70
5478 9201 1.930503 CACGCACGCAACCTATCATTA 59.069 47.619 0.00 0.00 0.00 1.90
5484 9207 2.663520 CACCACGCACGCAACCTA 60.664 61.111 0.00 0.00 0.00 3.08
5524 9247 3.243569 CGCCCAGTGAAACCAATGTAAAA 60.244 43.478 0.00 0.00 37.80 1.52
5591 9314 0.947660 TCTTGTCGAAGCAGCAGCAG 60.948 55.000 3.17 0.00 45.49 4.24
5592 9315 1.069596 TCTTGTCGAAGCAGCAGCA 59.930 52.632 3.17 0.00 45.49 4.41
5593 9316 1.495069 GTCTTGTCGAAGCAGCAGC 59.505 57.895 0.00 0.00 42.56 5.25
5594 9317 0.664466 TCGTCTTGTCGAAGCAGCAG 60.664 55.000 0.00 0.00 36.89 4.24
5595 9318 0.939577 GTCGTCTTGTCGAAGCAGCA 60.940 55.000 0.00 0.00 41.47 4.41
5596 9319 1.775962 GTCGTCTTGTCGAAGCAGC 59.224 57.895 0.00 0.00 41.47 5.25
5597 9320 0.660595 ACGTCGTCTTGTCGAAGCAG 60.661 55.000 0.00 0.00 41.41 4.24
5598 9321 0.248743 AACGTCGTCTTGTCGAAGCA 60.249 50.000 0.00 0.00 41.41 3.91
5599 9322 0.850856 AAACGTCGTCTTGTCGAAGC 59.149 50.000 0.00 0.00 41.41 3.86
5645 9368 1.298413 CGTCATGGACTACGCCGAG 60.298 63.158 0.00 0.00 31.66 4.63
5651 9374 1.409064 TGCAGGATCGTCATGGACTAC 59.591 52.381 0.00 0.00 0.00 2.73
5663 9386 1.524165 CTGGAGCAGCTGCAGGATC 60.524 63.158 38.24 26.34 44.36 3.36
5720 9443 2.939103 GAGCGGTAACAGCATTCAAGAT 59.061 45.455 0.00 0.00 38.34 2.40
5723 9446 1.804151 GTGAGCGGTAACAGCATTCAA 59.196 47.619 0.00 0.00 38.34 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.