Multiple sequence alignment - TraesCS3B01G506000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G506000 chr3B 100.000 2249 0 0 1 2249 749727469 749729717 0.000000e+00 4154.0
1 TraesCS3B01G506000 chr3B 84.726 347 48 5 845 1188 749863954 749864298 2.140000e-90 342.0
2 TraesCS3B01G506000 chr3B 85.185 324 36 6 869 1183 749983108 749983428 2.790000e-84 322.0
3 TraesCS3B01G506000 chr3B 89.552 201 20 1 344 544 749861809 749862008 1.030000e-63 254.0
4 TraesCS3B01G506000 chr3B 87.264 212 18 6 50 258 749861582 749861787 1.340000e-57 233.0
5 TraesCS3B01G506000 chr3B 89.005 191 16 2 1180 1365 749986634 749986824 4.830000e-57 231.0
6 TraesCS3B01G506000 chr3B 87.654 162 14 2 2086 2242 354006611 354006451 1.370000e-42 183.0
7 TraesCS3B01G506000 chr3B 95.181 83 4 0 1 83 749981587 749981669 5.040000e-27 132.0
8 TraesCS3B01G506000 chr3A 94.135 1023 52 7 344 1365 697619535 697620550 0.000000e+00 1550.0
9 TraesCS3B01G506000 chr3A 89.945 905 52 12 1366 2249 697620421 697621307 0.000000e+00 1131.0
10 TraesCS3B01G506000 chr3A 87.172 343 38 6 845 1183 697632391 697632731 3.500000e-103 385.0
11 TraesCS3B01G506000 chr3A 87.135 342 37 4 845 1183 697685883 697686220 4.530000e-102 381.0
12 TraesCS3B01G506000 chr3A 89.806 206 11 2 53 258 697619318 697619513 2.870000e-64 255.0
13 TraesCS3B01G506000 chr3A 87.850 214 19 4 50 258 697675206 697675417 6.200000e-61 244.0
14 TraesCS3B01G506000 chr3A 97.500 80 2 0 259 338 36486890 36486811 1.080000e-28 137.0
15 TraesCS3B01G506000 chr3A 89.796 98 10 0 1 98 697681886 697681983 2.340000e-25 126.0
16 TraesCS3B01G506000 chr3A 96.296 54 1 1 1 54 697619184 697619236 1.110000e-13 87.9
17 TraesCS3B01G506000 chr3D 93.957 1026 54 7 344 1365 562506152 562507173 0.000000e+00 1544.0
18 TraesCS3B01G506000 chr3D 90.862 383 16 10 1368 1750 562507048 562507411 1.550000e-136 496.0
19 TraesCS3B01G506000 chr3D 96.911 259 5 3 1 258 562505874 562506130 4.440000e-117 431.0
20 TraesCS3B01G506000 chr3D 87.390 341 40 3 845 1183 562517736 562518075 2.710000e-104 388.0
21 TraesCS3B01G506000 chr3D 87.135 342 37 4 845 1183 562582019 562582356 4.530000e-102 381.0
22 TraesCS3B01G506000 chr3D 89.552 201 18 1 344 544 562540225 562540422 3.710000e-63 252.0
23 TraesCS3B01G506000 chr3D 88.263 213 18 5 50 258 562539994 562540203 4.800000e-62 248.0
24 TraesCS3B01G506000 chr3D 89.796 98 10 0 1 98 562565521 562565618 2.340000e-25 126.0
25 TraesCS3B01G506000 chr2B 77.448 572 87 30 1534 2079 610519657 610519102 1.010000e-78 303.0
26 TraesCS3B01G506000 chr2B 87.342 158 15 1 2090 2242 3416926 3416769 2.300000e-40 176.0
27 TraesCS3B01G506000 chr2B 86.709 158 16 1 2090 2242 363921848 363922005 1.070000e-38 171.0
28 TraesCS3B01G506000 chr5A 76.461 599 98 25 1531 2093 655786694 655787285 3.660000e-73 285.0
29 TraesCS3B01G506000 chrUn 76.329 583 103 23 1533 2086 36519505 36518929 1.700000e-71 279.0
30 TraesCS3B01G506000 chr1B 76.348 575 93 23 1533 2076 576737683 576738245 3.680000e-68 268.0
31 TraesCS3B01G506000 chr1B 87.500 160 15 1 2090 2244 642706543 642706384 1.770000e-41 180.0
32 TraesCS3B01G506000 chr1B 96.739 92 1 2 259 348 429962085 429962176 3.870000e-33 152.0
33 TraesCS3B01G506000 chr6B 87.342 158 15 2 2090 2242 11743445 11743602 2.300000e-40 176.0
34 TraesCS3B01G506000 chr7A 86.875 160 16 1 2090 2244 700603720 700603561 8.260000e-40 174.0
35 TraesCS3B01G506000 chr7A 97.674 86 2 0 259 344 603953409 603953324 5.000000e-32 148.0
36 TraesCS3B01G506000 chr5B 88.514 148 12 1 2094 2236 22127850 22127997 8.260000e-40 174.0
37 TraesCS3B01G506000 chr4A 87.179 156 15 1 2092 2242 516187481 516187326 2.970000e-39 172.0
38 TraesCS3B01G506000 chr4A 95.699 93 3 1 259 351 614697971 614697880 5.000000e-32 148.0
39 TraesCS3B01G506000 chr4A 96.591 88 3 0 259 346 695807873 695807786 1.800000e-31 147.0
40 TraesCS3B01G506000 chr4A 95.455 88 4 0 259 346 695874174 695874087 8.370000e-30 141.0
41 TraesCS3B01G506000 chr5D 73.663 486 90 21 1600 2076 387720749 387721205 1.080000e-33 154.0
42 TraesCS3B01G506000 chr4B 97.753 89 1 1 259 346 635010467 635010379 3.870000e-33 152.0
43 TraesCS3B01G506000 chr4D 97.701 87 2 0 259 345 85613456 85613370 1.390000e-32 150.0
44 TraesCS3B01G506000 chr1A 96.471 85 3 0 259 343 298125546 298125630 8.370000e-30 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G506000 chr3B 749727469 749729717 2248 False 4154.000000 4154 100.000000 1 2249 1 chr3B.!!$F1 2248
1 TraesCS3B01G506000 chr3B 749861582 749864298 2716 False 276.333333 342 87.180667 50 1188 3 chr3B.!!$F2 1138
2 TraesCS3B01G506000 chr3B 749981587 749986824 5237 False 228.333333 322 89.790333 1 1365 3 chr3B.!!$F3 1364
3 TraesCS3B01G506000 chr3A 697619184 697621307 2123 False 755.975000 1550 92.545500 1 2249 4 chr3A.!!$F3 2248
4 TraesCS3B01G506000 chr3A 697681886 697686220 4334 False 253.500000 381 88.465500 1 1183 2 chr3A.!!$F4 1182
5 TraesCS3B01G506000 chr3D 562505874 562507411 1537 False 823.666667 1544 93.910000 1 1750 3 chr3D.!!$F4 1749
6 TraesCS3B01G506000 chr2B 610519102 610519657 555 True 303.000000 303 77.448000 1534 2079 1 chr2B.!!$R2 545
7 TraesCS3B01G506000 chr5A 655786694 655787285 591 False 285.000000 285 76.461000 1531 2093 1 chr5A.!!$F1 562
8 TraesCS3B01G506000 chrUn 36518929 36519505 576 True 279.000000 279 76.329000 1533 2086 1 chrUn.!!$R1 553
9 TraesCS3B01G506000 chr1B 576737683 576738245 562 False 268.000000 268 76.348000 1533 2076 1 chr1B.!!$F2 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 1362 0.039256 GCCAAGCTGCATTTCGTCAA 60.039 50.0 1.02 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1480 7063 0.03779 TATGTAGCTGCACACACGCA 60.038 50.0 6.66 0.0 40.32 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 149 6.870439 GGGAAAATTTGATAGATGCCATTAGC 59.130 38.462 0.00 0.00 44.14 3.09
83 167 7.428826 CCATTAGCTGAAGTTTTATCCCAATC 58.571 38.462 0.00 0.00 0.00 2.67
86 170 3.378427 GCTGAAGTTTTATCCCAATCGCT 59.622 43.478 0.00 0.00 0.00 4.93
285 1309 7.663043 TTTTACTTTCTGGTTACCCATTTGT 57.337 32.000 0.00 0.00 40.90 2.83
286 1310 8.763984 TTTTACTTTCTGGTTACCCATTTGTA 57.236 30.769 0.00 0.00 40.90 2.41
287 1311 8.763984 TTTACTTTCTGGTTACCCATTTGTAA 57.236 30.769 0.00 1.09 40.90 2.41
288 1312 6.644248 ACTTTCTGGTTACCCATTTGTAAC 57.356 37.500 0.00 5.69 46.29 2.50
298 1322 7.596494 GTTACCCATTTGTAACCTTTTACTCC 58.404 38.462 3.31 0.00 42.99 3.85
299 1323 5.960704 ACCCATTTGTAACCTTTTACTCCT 58.039 37.500 0.00 0.00 38.78 3.69
300 1324 6.378745 ACCCATTTGTAACCTTTTACTCCTT 58.621 36.000 0.00 0.00 38.78 3.36
301 1325 6.492429 ACCCATTTGTAACCTTTTACTCCTTC 59.508 38.462 0.00 0.00 38.78 3.46
302 1326 6.719829 CCCATTTGTAACCTTTTACTCCTTCT 59.280 38.462 0.00 0.00 38.78 2.85
303 1327 7.886446 CCCATTTGTAACCTTTTACTCCTTCTA 59.114 37.037 0.00 0.00 38.78 2.10
304 1328 9.292195 CCATTTGTAACCTTTTACTCCTTCTAA 57.708 33.333 0.00 0.00 38.78 2.10
307 1331 8.767478 TTGTAACCTTTTACTCCTTCTAATCG 57.233 34.615 0.00 0.00 38.78 3.34
308 1332 6.815142 TGTAACCTTTTACTCCTTCTAATCGC 59.185 38.462 0.00 0.00 38.78 4.58
309 1333 5.416271 ACCTTTTACTCCTTCTAATCGCA 57.584 39.130 0.00 0.00 0.00 5.10
310 1334 5.801380 ACCTTTTACTCCTTCTAATCGCAA 58.199 37.500 0.00 0.00 0.00 4.85
311 1335 6.415573 ACCTTTTACTCCTTCTAATCGCAAT 58.584 36.000 0.00 0.00 0.00 3.56
312 1336 6.316390 ACCTTTTACTCCTTCTAATCGCAATG 59.684 38.462 0.00 0.00 0.00 2.82
313 1337 6.538742 CCTTTTACTCCTTCTAATCGCAATGA 59.461 38.462 0.00 0.00 0.00 2.57
314 1338 7.065803 CCTTTTACTCCTTCTAATCGCAATGAA 59.934 37.037 0.00 0.00 0.00 2.57
315 1339 7.915293 TTTACTCCTTCTAATCGCAATGAAA 57.085 32.000 0.00 0.00 0.00 2.69
316 1340 7.539712 TTACTCCTTCTAATCGCAATGAAAG 57.460 36.000 0.00 0.00 0.00 2.62
317 1341 4.333926 ACTCCTTCTAATCGCAATGAAAGC 59.666 41.667 0.00 0.00 0.00 3.51
318 1342 4.260985 TCCTTCTAATCGCAATGAAAGCA 58.739 39.130 0.00 0.00 0.00 3.91
319 1343 4.333649 TCCTTCTAATCGCAATGAAAGCAG 59.666 41.667 0.00 0.00 0.00 4.24
320 1344 3.680642 TCTAATCGCAATGAAAGCAGC 57.319 42.857 0.00 0.00 0.00 5.25
321 1345 2.355756 TCTAATCGCAATGAAAGCAGCC 59.644 45.455 0.00 0.00 0.00 4.85
322 1346 0.889994 AATCGCAATGAAAGCAGCCA 59.110 45.000 0.00 0.00 0.00 4.75
323 1347 0.889994 ATCGCAATGAAAGCAGCCAA 59.110 45.000 0.00 0.00 0.00 4.52
324 1348 0.241749 TCGCAATGAAAGCAGCCAAG 59.758 50.000 0.00 0.00 0.00 3.61
325 1349 1.349259 CGCAATGAAAGCAGCCAAGC 61.349 55.000 0.00 0.00 0.00 4.01
335 1359 4.085876 AGCCAAGCTGCATTTCGT 57.914 50.000 1.02 0.00 37.57 3.85
336 1360 1.878775 AGCCAAGCTGCATTTCGTC 59.121 52.632 1.02 0.00 37.57 4.20
337 1361 0.890542 AGCCAAGCTGCATTTCGTCA 60.891 50.000 1.02 0.00 37.57 4.35
338 1362 0.039256 GCCAAGCTGCATTTCGTCAA 60.039 50.000 1.02 0.00 0.00 3.18
339 1363 1.602668 GCCAAGCTGCATTTCGTCAAA 60.603 47.619 1.02 0.00 0.00 2.69
340 1364 2.741612 CCAAGCTGCATTTCGTCAAAA 58.258 42.857 1.02 0.00 0.00 2.44
341 1365 3.122297 CCAAGCTGCATTTCGTCAAAAA 58.878 40.909 1.02 0.00 0.00 1.94
392 1416 7.041440 TGACTCTTCTTCATTTTTACGCATTCA 60.041 33.333 0.00 0.00 0.00 2.57
448 1475 3.702045 ACACTCCTGACCATAGCTAACTC 59.298 47.826 0.00 0.00 0.00 3.01
544 3288 3.541242 TCCCAATGGTGTCCAGAAAAT 57.459 42.857 0.00 0.00 36.75 1.82
557 4460 6.208599 GTGTCCAGAAAATAGAATCCAAACCA 59.791 38.462 0.00 0.00 0.00 3.67
798 6230 5.959618 AGCAAAGATACAAAAGGTGGTAC 57.040 39.130 0.00 0.00 0.00 3.34
855 6367 9.212641 CTACCCAATCAGACACATCTATAAATG 57.787 37.037 0.00 0.00 32.25 2.32
860 6372 9.000486 CAATCAGACACATCTATAAATGAGCAT 58.000 33.333 0.00 0.00 32.25 3.79
903 6416 1.111277 ACACCAAGAAACAACAGCCC 58.889 50.000 0.00 0.00 0.00 5.19
987 6502 2.576191 TCCTACAGCTAGCCACCAATTT 59.424 45.455 12.13 0.00 0.00 1.82
1016 6531 1.303236 CAATGGCGGACAGGGTGAA 60.303 57.895 0.00 0.00 0.00 3.18
1280 6863 1.741401 GCAGTGGCTGATGCGTGTA 60.741 57.895 0.00 0.00 40.82 2.90
1297 6880 4.201812 GCGTGTATGCAGTTATGTGTGATT 60.202 41.667 0.00 0.00 34.15 2.57
1338 6921 6.435591 AGCTAAGCTAGTGATCATATAGTGCA 59.564 38.462 15.46 0.00 36.99 4.57
1341 6924 6.602410 AGCTAGTGATCATATAGTGCATGT 57.398 37.500 15.46 0.00 0.00 3.21
1343 6926 7.770201 AGCTAGTGATCATATAGTGCATGTAG 58.230 38.462 15.46 0.00 0.00 2.74
1367 6950 5.924254 GTGCAACTACTTAATTTTGGAACCC 59.076 40.000 0.00 0.00 0.00 4.11
1368 6951 5.836358 TGCAACTACTTAATTTTGGAACCCT 59.164 36.000 0.00 0.00 0.00 4.34
1369 6952 6.015772 TGCAACTACTTAATTTTGGAACCCTC 60.016 38.462 0.00 0.00 0.00 4.30
1370 6953 6.208797 GCAACTACTTAATTTTGGAACCCTCT 59.791 38.462 0.00 0.00 0.00 3.69
1371 6954 7.593825 CAACTACTTAATTTTGGAACCCTCTG 58.406 38.462 0.00 0.00 0.00 3.35
1372 6955 6.246163 ACTACTTAATTTTGGAACCCTCTGG 58.754 40.000 0.00 0.00 37.80 3.86
1373 6956 3.832490 ACTTAATTTTGGAACCCTCTGGC 59.168 43.478 0.00 0.00 33.59 4.85
1374 6957 2.702270 AATTTTGGAACCCTCTGGCT 57.298 45.000 0.00 0.00 33.59 4.75
1375 6958 2.222227 ATTTTGGAACCCTCTGGCTC 57.778 50.000 0.00 0.00 33.59 4.70
1376 6959 1.149101 TTTTGGAACCCTCTGGCTCT 58.851 50.000 0.00 0.00 33.59 4.09
1377 6960 0.401738 TTTGGAACCCTCTGGCTCTG 59.598 55.000 0.00 0.00 33.59 3.35
1378 6961 0.473694 TTGGAACCCTCTGGCTCTGA 60.474 55.000 0.00 0.00 33.59 3.27
1379 6962 0.473694 TGGAACCCTCTGGCTCTGAA 60.474 55.000 0.00 0.00 33.59 3.02
1380 6963 0.251634 GGAACCCTCTGGCTCTGAAG 59.748 60.000 0.00 0.00 33.59 3.02
1381 6964 1.270907 GAACCCTCTGGCTCTGAAGA 58.729 55.000 0.00 0.00 33.59 2.87
1382 6965 1.206849 GAACCCTCTGGCTCTGAAGAG 59.793 57.143 2.81 2.81 44.75 2.85
1383 6966 0.116143 ACCCTCTGGCTCTGAAGAGT 59.884 55.000 9.03 0.00 43.85 3.24
1384 6967 0.823460 CCCTCTGGCTCTGAAGAGTC 59.177 60.000 4.95 4.95 46.44 3.36
1392 6975 4.744795 GGCTCTGAAGAGTCAAGGATAA 57.255 45.455 7.06 0.00 45.61 1.75
1393 6976 4.438148 GGCTCTGAAGAGTCAAGGATAAC 58.562 47.826 7.06 0.00 45.61 1.89
1394 6977 4.081420 GGCTCTGAAGAGTCAAGGATAACA 60.081 45.833 7.06 0.00 45.61 2.41
1395 6978 5.108517 GCTCTGAAGAGTCAAGGATAACAG 58.891 45.833 9.03 0.00 43.85 3.16
1396 6979 5.337169 GCTCTGAAGAGTCAAGGATAACAGT 60.337 44.000 9.03 0.00 43.85 3.55
1397 6980 6.030548 TCTGAAGAGTCAAGGATAACAGTG 57.969 41.667 0.00 0.00 31.88 3.66
1398 6981 5.047021 TCTGAAGAGTCAAGGATAACAGTGG 60.047 44.000 0.00 0.00 31.88 4.00
1399 6982 3.618690 AGAGTCAAGGATAACAGTGGC 57.381 47.619 0.00 0.00 0.00 5.01
1400 6983 3.177228 AGAGTCAAGGATAACAGTGGCT 58.823 45.455 0.00 0.00 0.00 4.75
1401 6984 3.055530 AGAGTCAAGGATAACAGTGGCTG 60.056 47.826 0.00 0.00 37.52 4.85
1402 6985 2.906389 AGTCAAGGATAACAGTGGCTGA 59.094 45.455 2.91 0.00 35.18 4.26
1403 6986 3.521126 AGTCAAGGATAACAGTGGCTGAT 59.479 43.478 2.91 0.00 35.18 2.90
1404 6987 3.624861 GTCAAGGATAACAGTGGCTGATG 59.375 47.826 2.91 0.00 35.18 3.07
1405 6988 2.338577 AGGATAACAGTGGCTGATGC 57.661 50.000 2.91 0.00 35.18 3.91
1406 6989 1.561076 AGGATAACAGTGGCTGATGCA 59.439 47.619 2.91 0.00 41.91 3.96
1407 6990 2.174210 AGGATAACAGTGGCTGATGCAT 59.826 45.455 0.00 0.00 41.91 3.96
1408 6991 2.292569 GGATAACAGTGGCTGATGCATG 59.707 50.000 2.46 0.00 41.91 4.06
1409 6992 2.495155 TAACAGTGGCTGATGCATGT 57.505 45.000 2.46 0.00 41.91 3.21
1410 6993 0.885879 AACAGTGGCTGATGCATGTG 59.114 50.000 2.46 0.00 41.91 3.21
1411 6994 0.251033 ACAGTGGCTGATGCATGTGT 60.251 50.000 2.46 0.00 41.91 3.72
1412 6995 0.170339 CAGTGGCTGATGCATGTGTG 59.830 55.000 2.46 0.00 41.91 3.82
1413 6996 3.725533 CAGTGGCTGATGCATGTGTGC 62.726 57.143 2.46 2.42 41.96 4.57
1426 7009 4.690184 CATGTGTGCAGTTATGTGTGAT 57.310 40.909 0.00 0.00 0.00 3.06
1427 7010 4.655027 CATGTGTGCAGTTATGTGTGATC 58.345 43.478 0.00 0.00 0.00 2.92
1428 7011 3.737850 TGTGTGCAGTTATGTGTGATCA 58.262 40.909 0.00 0.00 0.00 2.92
1429 7012 3.498018 TGTGTGCAGTTATGTGTGATCAC 59.502 43.478 19.27 19.27 44.08 3.06
1441 7024 4.088823 GTGTGATCACAGCCTCAAAATC 57.911 45.455 28.54 9.23 42.74 2.17
1442 7025 2.743664 TGTGATCACAGCCTCAAAATCG 59.256 45.455 24.56 0.00 36.21 3.34
1443 7026 3.002791 GTGATCACAGCCTCAAAATCGA 58.997 45.455 21.07 0.00 0.00 3.59
1444 7027 3.063180 GTGATCACAGCCTCAAAATCGAG 59.937 47.826 21.07 0.00 0.00 4.04
1445 7028 1.442769 TCACAGCCTCAAAATCGAGC 58.557 50.000 0.00 0.00 0.00 5.03
1446 7029 0.449388 CACAGCCTCAAAATCGAGCC 59.551 55.000 0.00 0.00 0.00 4.70
1447 7030 0.036732 ACAGCCTCAAAATCGAGCCA 59.963 50.000 0.00 0.00 0.00 4.75
1448 7031 1.167851 CAGCCTCAAAATCGAGCCAA 58.832 50.000 0.00 0.00 0.00 4.52
1449 7032 1.131883 CAGCCTCAAAATCGAGCCAAG 59.868 52.381 0.00 0.00 0.00 3.61
1450 7033 0.179153 GCCTCAAAATCGAGCCAAGC 60.179 55.000 0.00 0.00 0.00 4.01
1451 7034 1.457346 CCTCAAAATCGAGCCAAGCT 58.543 50.000 0.00 0.00 43.88 3.74
1452 7035 2.632377 CCTCAAAATCGAGCCAAGCTA 58.368 47.619 0.00 0.00 39.88 3.32
1453 7036 3.009723 CCTCAAAATCGAGCCAAGCTAA 58.990 45.455 0.00 0.00 39.88 3.09
1454 7037 3.629398 CCTCAAAATCGAGCCAAGCTAAT 59.371 43.478 0.00 0.00 39.88 1.73
1455 7038 4.497006 CCTCAAAATCGAGCCAAGCTAATG 60.497 45.833 0.00 0.00 39.88 1.90
1456 7039 4.260985 TCAAAATCGAGCCAAGCTAATGA 58.739 39.130 0.00 0.00 39.88 2.57
1457 7040 4.883585 TCAAAATCGAGCCAAGCTAATGAT 59.116 37.500 0.00 0.00 39.88 2.45
1458 7041 5.008019 TCAAAATCGAGCCAAGCTAATGATC 59.992 40.000 0.00 0.00 39.88 2.92
1459 7042 3.758755 ATCGAGCCAAGCTAATGATCA 57.241 42.857 0.00 0.00 39.88 2.92
1460 7043 3.758755 TCGAGCCAAGCTAATGATCAT 57.241 42.857 1.18 1.18 39.88 2.45
1461 7044 4.871933 TCGAGCCAAGCTAATGATCATA 57.128 40.909 9.04 0.00 39.88 2.15
1462 7045 5.411831 TCGAGCCAAGCTAATGATCATAT 57.588 39.130 9.04 2.30 39.88 1.78
1463 7046 6.530019 TCGAGCCAAGCTAATGATCATATA 57.470 37.500 9.04 3.37 39.88 0.86
1464 7047 6.567959 TCGAGCCAAGCTAATGATCATATAG 58.432 40.000 9.04 13.10 39.88 1.31
1465 7048 5.233902 CGAGCCAAGCTAATGATCATATAGC 59.766 44.000 26.08 26.08 39.88 2.97
1473 7056 6.638610 GCTAATGATCATATAGCTGGACAGT 58.361 40.000 26.10 7.44 39.12 3.55
1474 7057 6.534436 GCTAATGATCATATAGCTGGACAGTG 59.466 42.308 26.10 0.00 39.12 3.66
1475 7058 4.879197 TGATCATATAGCTGGACAGTGG 57.121 45.455 0.00 0.00 0.00 4.00
1476 7059 3.007290 TGATCATATAGCTGGACAGTGGC 59.993 47.826 0.00 0.00 0.00 5.01
1477 7060 2.682594 TCATATAGCTGGACAGTGGCT 58.317 47.619 0.00 0.00 39.74 4.75
1478 7061 2.366590 TCATATAGCTGGACAGTGGCTG 59.633 50.000 0.00 0.00 37.50 4.85
1479 7062 2.159179 TATAGCTGGACAGTGGCTGA 57.841 50.000 0.00 0.00 37.50 4.26
1480 7063 1.504912 ATAGCTGGACAGTGGCTGAT 58.495 50.000 0.00 0.00 37.50 2.90
1481 7064 0.538584 TAGCTGGACAGTGGCTGATG 59.461 55.000 0.00 0.00 37.50 3.07
1482 7065 2.404995 GCTGGACAGTGGCTGATGC 61.405 63.158 0.00 0.00 35.18 3.91
1483 7066 2.046988 TGGACAGTGGCTGATGCG 60.047 61.111 0.00 0.00 40.82 4.73
1484 7067 2.046892 GGACAGTGGCTGATGCGT 60.047 61.111 0.00 0.00 40.82 5.24
1485 7068 2.393768 GGACAGTGGCTGATGCGTG 61.394 63.158 0.00 0.00 40.82 5.34
1486 7069 1.669115 GACAGTGGCTGATGCGTGT 60.669 57.895 2.91 0.00 40.82 4.49
1567 7150 4.580995 TGGAGTGAAAACATTCCGCTTTTA 59.419 37.500 0.00 0.00 34.16 1.52
1757 7347 7.256119 CCATCTTTACTATGAGACTATGGCTGT 60.256 40.741 0.00 0.00 0.00 4.40
1790 7381 4.122143 ACCACCAAACAAACACAATGAG 57.878 40.909 0.00 0.00 0.00 2.90
1811 7402 1.549170 ACGGTGAGTAGAATGACCCAC 59.451 52.381 0.00 0.00 0.00 4.61
1829 7420 1.002134 CGTGAGGCCCAACTTCCAT 60.002 57.895 0.00 0.00 0.00 3.41
2039 7676 1.142474 GGTGTTCGTTTCCGGTAGTG 58.858 55.000 0.00 0.00 33.95 2.74
2079 7716 7.446013 TCATTACCGGGGTTTATGTATTCATTC 59.554 37.037 6.32 0.00 35.70 2.67
2088 7725 8.410912 GGGTTTATGTATTCATTCCCACTTTAC 58.589 37.037 11.89 0.00 37.74 2.01
2119 7757 2.341176 GGTGCACGTAACTCCCGT 59.659 61.111 11.45 0.00 39.52 5.28
2123 7761 1.205820 GCACGTAACTCCCGTTTGC 59.794 57.895 0.00 0.00 36.17 3.68
2163 7801 1.157870 CGGCCGCTTTGGGTGTATAG 61.158 60.000 14.67 0.00 38.63 1.31
2166 7804 2.207590 GCCGCTTTGGGTGTATAGTAC 58.792 52.381 0.00 0.00 38.63 2.73
2176 7814 3.528532 GGTGTATAGTACGCAGCCTTTT 58.471 45.455 3.45 0.00 40.83 2.27
2178 7816 3.554731 GTGTATAGTACGCAGCCTTTTCC 59.445 47.826 0.00 0.00 38.96 3.13
2181 7819 4.957684 ATAGTACGCAGCCTTTTCCTAT 57.042 40.909 0.00 0.00 0.00 2.57
2206 7844 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2209 7847 3.330701 TGTAAGAGGCTGTTTCCAGGAAT 59.669 43.478 1.58 0.00 39.22 3.01
2236 7874 0.518636 CTCATGGTCACAAGGCAACG 59.481 55.000 0.00 0.00 46.39 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 149 4.731773 GCAGCGATTGGGATAAAACTTCAG 60.732 45.833 0.00 0.00 0.00 3.02
104 913 1.748493 GAGTTTGTGGACACCAAAGCA 59.252 47.619 0.00 0.00 34.18 3.91
106 915 2.099098 GTGGAGTTTGTGGACACCAAAG 59.901 50.000 0.00 0.00 41.03 2.77
107 916 2.096248 GTGGAGTTTGTGGACACCAAA 58.904 47.619 0.00 0.00 41.03 3.28
275 1299 7.093965 AGGAGTAAAAGGTTACAAATGGGTA 57.906 36.000 0.00 0.00 41.88 3.69
278 1302 7.761038 AGAAGGAGTAAAAGGTTACAAATGG 57.239 36.000 0.00 0.00 41.88 3.16
281 1305 9.211485 CGATTAGAAGGAGTAAAAGGTTACAAA 57.789 33.333 0.00 0.00 41.88 2.83
282 1306 7.332678 GCGATTAGAAGGAGTAAAAGGTTACAA 59.667 37.037 0.00 0.00 41.88 2.41
283 1307 6.815142 GCGATTAGAAGGAGTAAAAGGTTACA 59.185 38.462 0.00 0.00 41.88 2.41
284 1308 6.815142 TGCGATTAGAAGGAGTAAAAGGTTAC 59.185 38.462 0.00 0.00 40.05 2.50
285 1309 6.938507 TGCGATTAGAAGGAGTAAAAGGTTA 58.061 36.000 0.00 0.00 0.00 2.85
286 1310 5.801380 TGCGATTAGAAGGAGTAAAAGGTT 58.199 37.500 0.00 0.00 0.00 3.50
287 1311 5.416271 TGCGATTAGAAGGAGTAAAAGGT 57.584 39.130 0.00 0.00 0.00 3.50
288 1312 6.538742 TCATTGCGATTAGAAGGAGTAAAAGG 59.461 38.462 0.00 0.00 0.00 3.11
289 1313 7.539712 TCATTGCGATTAGAAGGAGTAAAAG 57.460 36.000 0.00 0.00 0.00 2.27
290 1314 7.915293 TTCATTGCGATTAGAAGGAGTAAAA 57.085 32.000 0.00 0.00 0.00 1.52
291 1315 7.414098 GCTTTCATTGCGATTAGAAGGAGTAAA 60.414 37.037 1.55 0.00 0.00 2.01
292 1316 6.037172 GCTTTCATTGCGATTAGAAGGAGTAA 59.963 38.462 1.55 0.00 0.00 2.24
293 1317 5.523916 GCTTTCATTGCGATTAGAAGGAGTA 59.476 40.000 1.55 0.00 0.00 2.59
294 1318 4.333926 GCTTTCATTGCGATTAGAAGGAGT 59.666 41.667 1.55 0.00 0.00 3.85
295 1319 4.333649 TGCTTTCATTGCGATTAGAAGGAG 59.666 41.667 1.55 0.00 0.00 3.69
296 1320 4.260985 TGCTTTCATTGCGATTAGAAGGA 58.739 39.130 1.55 0.00 0.00 3.36
297 1321 4.595116 CTGCTTTCATTGCGATTAGAAGG 58.405 43.478 0.00 0.00 0.00 3.46
298 1322 4.033684 GCTGCTTTCATTGCGATTAGAAG 58.966 43.478 0.00 0.00 0.00 2.85
299 1323 3.181497 GGCTGCTTTCATTGCGATTAGAA 60.181 43.478 0.00 0.00 0.00 2.10
300 1324 2.355756 GGCTGCTTTCATTGCGATTAGA 59.644 45.455 0.00 0.00 0.00 2.10
301 1325 2.097954 TGGCTGCTTTCATTGCGATTAG 59.902 45.455 0.00 0.00 0.00 1.73
302 1326 2.090760 TGGCTGCTTTCATTGCGATTA 58.909 42.857 0.00 0.00 0.00 1.75
303 1327 0.889994 TGGCTGCTTTCATTGCGATT 59.110 45.000 0.00 0.00 0.00 3.34
304 1328 0.889994 TTGGCTGCTTTCATTGCGAT 59.110 45.000 0.00 0.00 0.00 4.58
305 1329 0.241749 CTTGGCTGCTTTCATTGCGA 59.758 50.000 0.00 0.00 0.00 5.10
306 1330 1.349259 GCTTGGCTGCTTTCATTGCG 61.349 55.000 0.00 0.00 0.00 4.85
307 1331 0.037605 AGCTTGGCTGCTTTCATTGC 60.038 50.000 0.00 0.00 40.93 3.56
318 1342 0.890542 TGACGAAATGCAGCTTGGCT 60.891 50.000 0.00 0.00 40.77 4.75
319 1343 0.039256 TTGACGAAATGCAGCTTGGC 60.039 50.000 0.00 0.00 0.00 4.52
320 1344 2.420628 TTTGACGAAATGCAGCTTGG 57.579 45.000 0.00 0.00 0.00 3.61
341 1365 5.586643 GGATTCGAGATAGGCTGAACTTTTT 59.413 40.000 0.00 0.00 0.00 1.94
448 1475 3.616956 TGTGAGGGAGCAAAGTGATAG 57.383 47.619 0.00 0.00 0.00 2.08
544 3288 6.069673 TCCTGATAAGCTTGGTTTGGATTCTA 60.070 38.462 9.86 0.00 0.00 2.10
557 4460 8.529424 TGATTCATCAAATTCCTGATAAGCTT 57.471 30.769 3.48 3.48 34.20 3.74
798 6230 5.997746 TGTTCTCTGTTGGAAGGTTCTATTG 59.002 40.000 0.00 0.00 0.00 1.90
855 6367 1.293924 CTGATGACCCAACGATGCTC 58.706 55.000 0.00 0.00 0.00 4.26
860 6372 0.612744 TGATGCTGATGACCCAACGA 59.387 50.000 0.00 0.00 0.00 3.85
903 6416 4.814147 TCAGTTCACTTGAGCTAGATGTG 58.186 43.478 0.00 0.00 33.74 3.21
1035 6550 2.264480 CCGAAGATCACCACCGCA 59.736 61.111 0.00 0.00 0.00 5.69
1241 6824 2.298446 CTGTCCTTGACTCTTCAGAGCA 59.702 50.000 3.58 0.89 45.79 4.26
1280 6863 3.428452 GCTGCAATCACACATAACTGCAT 60.428 43.478 0.00 0.00 38.95 3.96
1341 6924 7.040271 GGGTTCCAAAATTAAGTAGTTGCACTA 60.040 37.037 0.00 0.00 0.00 2.74
1343 6926 5.924254 GGGTTCCAAAATTAAGTAGTTGCAC 59.076 40.000 0.00 0.00 0.00 4.57
1348 6931 6.246163 CCAGAGGGTTCCAAAATTAAGTAGT 58.754 40.000 0.00 0.00 0.00 2.73
1349 6932 5.125578 GCCAGAGGGTTCCAAAATTAAGTAG 59.874 44.000 0.00 0.00 36.17 2.57
1350 6933 5.014202 GCCAGAGGGTTCCAAAATTAAGTA 58.986 41.667 0.00 0.00 36.17 2.24
1351 6934 3.832490 GCCAGAGGGTTCCAAAATTAAGT 59.168 43.478 0.00 0.00 36.17 2.24
1352 6935 4.089361 AGCCAGAGGGTTCCAAAATTAAG 58.911 43.478 0.00 0.00 36.17 1.85
1353 6936 4.086457 GAGCCAGAGGGTTCCAAAATTAA 58.914 43.478 0.00 0.00 38.39 1.40
1354 6937 3.333680 AGAGCCAGAGGGTTCCAAAATTA 59.666 43.478 0.00 0.00 44.90 1.40
1355 6938 2.110721 AGAGCCAGAGGGTTCCAAAATT 59.889 45.455 0.00 0.00 44.90 1.82
1356 6939 1.713078 AGAGCCAGAGGGTTCCAAAAT 59.287 47.619 0.00 0.00 44.90 1.82
1357 6940 1.149101 AGAGCCAGAGGGTTCCAAAA 58.851 50.000 0.00 0.00 44.90 2.44
1358 6941 0.401738 CAGAGCCAGAGGGTTCCAAA 59.598 55.000 0.00 0.00 44.90 3.28
1359 6942 0.473694 TCAGAGCCAGAGGGTTCCAA 60.474 55.000 0.00 0.00 44.90 3.53
1360 6943 0.473694 TTCAGAGCCAGAGGGTTCCA 60.474 55.000 0.00 0.00 44.90 3.53
1361 6944 0.251634 CTTCAGAGCCAGAGGGTTCC 59.748 60.000 0.00 0.00 44.90 3.62
1362 6945 1.206849 CTCTTCAGAGCCAGAGGGTTC 59.793 57.143 0.00 0.00 44.19 3.62
1363 6946 1.274712 CTCTTCAGAGCCAGAGGGTT 58.725 55.000 0.00 0.00 35.13 4.11
1364 6947 0.116143 ACTCTTCAGAGCCAGAGGGT 59.884 55.000 3.58 0.00 45.79 4.34
1365 6948 0.823460 GACTCTTCAGAGCCAGAGGG 59.177 60.000 3.58 0.00 45.79 4.30
1366 6949 1.554836 TGACTCTTCAGAGCCAGAGG 58.445 55.000 3.58 0.00 45.79 3.69
1367 6950 2.094078 CCTTGACTCTTCAGAGCCAGAG 60.094 54.545 3.58 0.00 45.79 3.35
1368 6951 1.898472 CCTTGACTCTTCAGAGCCAGA 59.102 52.381 3.58 0.00 45.79 3.86
1369 6952 1.898472 TCCTTGACTCTTCAGAGCCAG 59.102 52.381 3.58 0.00 45.79 4.85
1370 6953 2.015456 TCCTTGACTCTTCAGAGCCA 57.985 50.000 3.58 0.00 45.79 4.75
1371 6954 4.081420 TGTTATCCTTGACTCTTCAGAGCC 60.081 45.833 3.58 0.00 45.79 4.70
1372 6955 5.078411 TGTTATCCTTGACTCTTCAGAGC 57.922 43.478 3.58 0.00 45.79 4.09
1374 6957 5.047021 CCACTGTTATCCTTGACTCTTCAGA 60.047 44.000 0.00 0.00 31.71 3.27
1375 6958 5.174395 CCACTGTTATCCTTGACTCTTCAG 58.826 45.833 0.00 0.00 31.71 3.02
1376 6959 4.563580 GCCACTGTTATCCTTGACTCTTCA 60.564 45.833 0.00 0.00 0.00 3.02
1377 6960 3.935828 GCCACTGTTATCCTTGACTCTTC 59.064 47.826 0.00 0.00 0.00 2.87
1378 6961 3.584848 AGCCACTGTTATCCTTGACTCTT 59.415 43.478 0.00 0.00 0.00 2.85
1379 6962 3.055530 CAGCCACTGTTATCCTTGACTCT 60.056 47.826 0.00 0.00 0.00 3.24
1380 6963 3.055819 TCAGCCACTGTTATCCTTGACTC 60.056 47.826 0.00 0.00 32.61 3.36
1381 6964 2.906389 TCAGCCACTGTTATCCTTGACT 59.094 45.455 0.00 0.00 32.61 3.41
1382 6965 3.334583 TCAGCCACTGTTATCCTTGAC 57.665 47.619 0.00 0.00 32.61 3.18
1383 6966 3.877559 CATCAGCCACTGTTATCCTTGA 58.122 45.455 0.00 0.00 32.61 3.02
1384 6967 2.357009 GCATCAGCCACTGTTATCCTTG 59.643 50.000 0.00 0.00 32.61 3.61
1385 6968 2.025981 TGCATCAGCCACTGTTATCCTT 60.026 45.455 0.00 0.00 41.13 3.36
1386 6969 1.561076 TGCATCAGCCACTGTTATCCT 59.439 47.619 0.00 0.00 41.13 3.24
1387 6970 2.042686 TGCATCAGCCACTGTTATCC 57.957 50.000 0.00 0.00 41.13 2.59
1388 6971 2.947652 ACATGCATCAGCCACTGTTATC 59.052 45.455 0.00 0.00 41.13 1.75
1389 6972 2.686405 CACATGCATCAGCCACTGTTAT 59.314 45.455 0.00 0.00 41.13 1.89
1390 6973 2.086094 CACATGCATCAGCCACTGTTA 58.914 47.619 0.00 0.00 41.13 2.41
1391 6974 0.885879 CACATGCATCAGCCACTGTT 59.114 50.000 0.00 0.00 41.13 3.16
1392 6975 0.251033 ACACATGCATCAGCCACTGT 60.251 50.000 0.00 0.00 41.13 3.55
1393 6976 0.170339 CACACATGCATCAGCCACTG 59.830 55.000 0.00 0.00 41.13 3.66
1394 6977 2.563297 CACACATGCATCAGCCACT 58.437 52.632 0.00 0.00 41.13 4.00
1405 6988 4.154556 TGATCACACATAACTGCACACATG 59.845 41.667 0.00 0.00 0.00 3.21
1406 6989 4.154737 GTGATCACACATAACTGCACACAT 59.845 41.667 21.07 0.00 45.32 3.21
1407 6990 3.498018 GTGATCACACATAACTGCACACA 59.502 43.478 21.07 0.00 45.32 3.72
1408 6991 4.070581 GTGATCACACATAACTGCACAC 57.929 45.455 21.07 0.00 45.32 3.82
1420 7003 3.425359 CGATTTTGAGGCTGTGATCACAC 60.425 47.826 24.56 19.35 46.09 3.82
1421 7004 2.743664 CGATTTTGAGGCTGTGATCACA 59.256 45.455 26.33 26.33 39.32 3.58
1422 7005 3.002791 TCGATTTTGAGGCTGTGATCAC 58.997 45.455 19.27 19.27 0.00 3.06
1423 7006 3.264947 CTCGATTTTGAGGCTGTGATCA 58.735 45.455 0.00 0.00 32.18 2.92
1424 7007 2.031437 GCTCGATTTTGAGGCTGTGATC 59.969 50.000 0.00 0.00 36.47 2.92
1425 7008 2.012673 GCTCGATTTTGAGGCTGTGAT 58.987 47.619 0.00 0.00 36.47 3.06
1426 7009 1.442769 GCTCGATTTTGAGGCTGTGA 58.557 50.000 0.00 0.00 36.47 3.58
1427 7010 3.984292 GCTCGATTTTGAGGCTGTG 57.016 52.632 0.00 0.00 36.47 3.66
1432 7015 1.457346 AGCTTGGCTCGATTTTGAGG 58.543 50.000 0.00 0.00 30.62 3.86
1433 7016 4.333649 TCATTAGCTTGGCTCGATTTTGAG 59.666 41.667 0.00 0.00 40.44 3.02
1434 7017 4.260985 TCATTAGCTTGGCTCGATTTTGA 58.739 39.130 0.00 0.00 40.44 2.69
1435 7018 4.621068 TCATTAGCTTGGCTCGATTTTG 57.379 40.909 0.00 0.00 40.44 2.44
1436 7019 4.883585 TGATCATTAGCTTGGCTCGATTTT 59.116 37.500 0.00 0.00 40.44 1.82
1437 7020 4.454678 TGATCATTAGCTTGGCTCGATTT 58.545 39.130 0.00 0.00 40.44 2.17
1438 7021 4.077300 TGATCATTAGCTTGGCTCGATT 57.923 40.909 0.00 0.00 40.44 3.34
1439 7022 3.758755 TGATCATTAGCTTGGCTCGAT 57.241 42.857 0.00 0.00 40.44 3.59
1440 7023 3.758755 ATGATCATTAGCTTGGCTCGA 57.241 42.857 1.18 0.00 40.44 4.04
1441 7024 5.233902 GCTATATGATCATTAGCTTGGCTCG 59.766 44.000 26.10 6.63 40.44 5.03
1442 7025 6.258287 CAGCTATATGATCATTAGCTTGGCTC 59.742 42.308 29.80 13.58 41.61 4.70
1443 7026 6.114089 CAGCTATATGATCATTAGCTTGGCT 58.886 40.000 29.80 20.17 41.61 4.75
1444 7027 5.296283 CCAGCTATATGATCATTAGCTTGGC 59.704 44.000 29.80 18.92 41.61 4.52
1445 7028 6.538021 GTCCAGCTATATGATCATTAGCTTGG 59.462 42.308 29.80 29.32 41.61 3.61
1446 7029 7.101700 TGTCCAGCTATATGATCATTAGCTTG 58.898 38.462 29.80 27.44 41.61 4.01
1447 7030 7.038445 ACTGTCCAGCTATATGATCATTAGCTT 60.038 37.037 29.80 20.21 41.61 3.74
1448 7031 6.440010 ACTGTCCAGCTATATGATCATTAGCT 59.560 38.462 28.25 28.25 44.01 3.32
1449 7032 6.534436 CACTGTCCAGCTATATGATCATTAGC 59.466 42.308 26.08 26.08 0.00 3.09
1450 7033 7.040494 CCACTGTCCAGCTATATGATCATTAG 58.960 42.308 14.65 14.99 0.00 1.73
1451 7034 6.575056 GCCACTGTCCAGCTATATGATCATTA 60.575 42.308 14.65 5.59 0.00 1.90
1452 7035 5.802465 CCACTGTCCAGCTATATGATCATT 58.198 41.667 14.65 4.68 0.00 2.57
1453 7036 4.323333 GCCACTGTCCAGCTATATGATCAT 60.323 45.833 13.81 13.81 0.00 2.45
1454 7037 3.007290 GCCACTGTCCAGCTATATGATCA 59.993 47.826 0.00 0.00 0.00 2.92
1455 7038 3.260380 AGCCACTGTCCAGCTATATGATC 59.740 47.826 0.00 0.00 34.38 2.92
1456 7039 3.007723 CAGCCACTGTCCAGCTATATGAT 59.992 47.826 0.00 0.00 34.38 2.45
1457 7040 2.366590 CAGCCACTGTCCAGCTATATGA 59.633 50.000 0.00 0.00 34.38 2.15
1458 7041 2.366590 TCAGCCACTGTCCAGCTATATG 59.633 50.000 0.00 0.00 34.38 1.78
1459 7042 2.682594 TCAGCCACTGTCCAGCTATAT 58.317 47.619 0.00 0.00 34.38 0.86
1460 7043 2.159179 TCAGCCACTGTCCAGCTATA 57.841 50.000 0.00 0.00 34.38 1.31
1461 7044 1.140452 CATCAGCCACTGTCCAGCTAT 59.860 52.381 0.00 0.00 34.38 2.97
1462 7045 0.538584 CATCAGCCACTGTCCAGCTA 59.461 55.000 0.00 0.00 34.38 3.32
1463 7046 1.298993 CATCAGCCACTGTCCAGCT 59.701 57.895 0.00 0.00 37.32 4.24
1464 7047 2.404995 GCATCAGCCACTGTCCAGC 61.405 63.158 0.00 0.00 32.61 4.85
1465 7048 2.104859 CGCATCAGCCACTGTCCAG 61.105 63.158 0.00 0.00 37.52 3.86
1466 7049 2.046988 CGCATCAGCCACTGTCCA 60.047 61.111 0.00 0.00 37.52 4.02
1467 7050 2.046892 ACGCATCAGCCACTGTCC 60.047 61.111 0.00 0.00 37.52 4.02
1468 7051 1.669115 ACACGCATCAGCCACTGTC 60.669 57.895 0.00 0.00 37.52 3.51
1469 7052 1.962822 CACACGCATCAGCCACTGT 60.963 57.895 0.00 0.00 37.52 3.55
1470 7053 1.962822 ACACACGCATCAGCCACTG 60.963 57.895 0.00 0.00 37.52 3.66
1471 7054 1.962822 CACACACGCATCAGCCACT 60.963 57.895 0.00 0.00 37.52 4.00
1472 7055 2.557805 CACACACGCATCAGCCAC 59.442 61.111 0.00 0.00 37.52 5.01
1473 7056 3.356267 GCACACACGCATCAGCCA 61.356 61.111 0.00 0.00 37.52 4.75
1474 7057 3.318539 CTGCACACACGCATCAGCC 62.319 63.158 0.00 0.00 42.06 4.85
1475 7058 2.175078 CTGCACACACGCATCAGC 59.825 61.111 0.00 0.00 42.06 4.26
1476 7059 1.015607 TAGCTGCACACACGCATCAG 61.016 55.000 1.02 0.00 42.06 2.90
1477 7060 1.005156 TAGCTGCACACACGCATCA 60.005 52.632 1.02 0.00 42.06 3.07
1478 7061 1.291184 TGTAGCTGCACACACGCATC 61.291 55.000 0.00 0.00 42.06 3.91
1479 7062 0.674581 ATGTAGCTGCACACACGCAT 60.675 50.000 6.66 0.00 42.06 4.73
1480 7063 0.037790 TATGTAGCTGCACACACGCA 60.038 50.000 6.66 0.00 40.32 5.24
1481 7064 0.647410 CTATGTAGCTGCACACACGC 59.353 55.000 6.66 0.00 0.00 5.34
1482 7065 1.996292 ACTATGTAGCTGCACACACG 58.004 50.000 6.66 6.61 0.00 4.49
1483 7066 4.466828 CAAAACTATGTAGCTGCACACAC 58.533 43.478 6.66 0.00 0.00 3.82
1484 7067 3.501828 CCAAAACTATGTAGCTGCACACA 59.498 43.478 6.66 5.96 0.00 3.72
1485 7068 3.751175 TCCAAAACTATGTAGCTGCACAC 59.249 43.478 6.66 0.00 0.00 3.82
1486 7069 4.014569 TCCAAAACTATGTAGCTGCACA 57.985 40.909 6.66 0.00 0.00 4.57
1567 7150 3.215975 TCCATTTTCGTTTTTCCTCCGT 58.784 40.909 0.00 0.00 0.00 4.69
1680 7270 0.240945 GTTTCCATGCCTGTTCCGTG 59.759 55.000 0.00 0.00 0.00 4.94
1681 7271 1.234615 CGTTTCCATGCCTGTTCCGT 61.235 55.000 0.00 0.00 0.00 4.69
1711 7301 9.573133 AAGATGGAAATTTCATATTCACGAAAC 57.427 29.630 19.49 0.00 34.16 2.78
1757 7347 0.610174 TTGGTGGTTGTGCTGCAAAA 59.390 45.000 2.77 1.26 39.03 2.44
1790 7381 1.822990 TGGGTCATTCTACTCACCGTC 59.177 52.381 0.00 0.00 0.00 4.79
1811 7402 1.002134 ATGGAAGTTGGGCCTCACG 60.002 57.895 4.53 0.00 0.00 4.35
1829 7420 1.343142 AGTTGACTACGTGCATGGTCA 59.657 47.619 11.36 11.95 38.21 4.02
2039 7676 5.354234 CCCGGTAATGAATATGGAAGCATAC 59.646 44.000 0.00 0.00 0.00 2.39
2079 7716 1.000843 GCTGCCCTTTTGTAAAGTGGG 59.999 52.381 10.99 10.99 36.90 4.61
2088 7725 3.683937 CACCGGGCTGCCCTTTTG 61.684 66.667 33.39 22.68 42.67 2.44
2137 7775 3.431725 CAAAGCGGCCGGACCTTC 61.432 66.667 29.38 8.93 35.61 3.46
2146 7784 2.207590 GTACTATACACCCAAAGCGGC 58.792 52.381 0.00 0.00 0.00 6.53
2163 7801 5.758784 AGAAATATAGGAAAAGGCTGCGTAC 59.241 40.000 0.00 0.00 0.00 3.67
2166 7804 4.576463 ACAGAAATATAGGAAAAGGCTGCG 59.424 41.667 0.00 0.00 0.00 5.18
2176 7814 7.676683 AACAGCCTCTTACAGAAATATAGGA 57.323 36.000 0.00 0.00 0.00 2.94
2178 7816 7.987458 TGGAAACAGCCTCTTACAGAAATATAG 59.013 37.037 0.00 0.00 35.01 1.31
2181 7819 6.121776 TGGAAACAGCCTCTTACAGAAATA 57.878 37.500 0.00 0.00 35.01 1.40
2196 7834 8.776956 ATGAGGTCATGGATTCCTGGAAACAG 62.777 46.154 14.03 9.52 46.02 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.