Multiple sequence alignment - TraesCS3B01G505200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G505200 chr3B 100.000 3662 0 0 1 3662 749483865 749487526 0.000000e+00 6763.0
1 TraesCS3B01G505200 chr3B 84.132 1670 208 32 1045 2667 749490823 749492482 0.000000e+00 1563.0
2 TraesCS3B01G505200 chr3B 94.697 660 31 2 2926 3581 321772638 321771979 0.000000e+00 1022.0
3 TraesCS3B01G505200 chr3B 91.803 61 2 3 382 441 749484188 749484246 8.430000e-12 82.4
4 TraesCS3B01G505200 chr3D 92.386 2167 118 29 764 2899 562178139 562180289 0.000000e+00 3044.0
5 TraesCS3B01G505200 chr3D 93.944 677 35 5 2927 3598 559108829 559109504 0.000000e+00 1018.0
6 TraesCS3B01G505200 chr3D 79.933 892 113 29 1295 2153 562204808 562205666 2.430000e-166 595.0
7 TraesCS3B01G505200 chr3D 88.249 417 47 2 2147 2562 562206739 562207154 7.060000e-137 497.0
8 TraesCS3B01G505200 chr3D 96.875 32 1 0 366 397 561928628 561928659 2.000000e-03 54.7
9 TraesCS3B01G505200 chr3A 91.925 1771 91 22 920 2667 697507048 697508789 0.000000e+00 2431.0
10 TraesCS3B01G505200 chr3A 80.392 204 17 11 727 921 697500987 697501176 2.290000e-27 134.0
11 TraesCS3B01G505200 chr6D 84.375 1696 201 31 1001 2667 100346041 100347701 0.000000e+00 1605.0
12 TraesCS3B01G505200 chr6D 90.062 322 17 4 1 322 464544083 464543777 1.580000e-108 403.0
13 TraesCS3B01G505200 chr1B 96.440 646 20 2 2942 3584 269218900 269218255 0.000000e+00 1062.0
14 TraesCS3B01G505200 chr1B 95.413 654 29 1 2931 3583 25227760 25227107 0.000000e+00 1040.0
15 TraesCS3B01G505200 chr1B 95.652 644 26 2 2939 3580 390272480 390273123 0.000000e+00 1033.0
16 TraesCS3B01G505200 chr1B 75.135 1661 330 49 1044 2667 456433753 456432139 0.000000e+00 702.0
17 TraesCS3B01G505200 chr1B 74.631 1490 307 52 1154 2621 603744943 603746383 3.150000e-165 592.0
18 TraesCS3B01G505200 chr1B 74.561 1482 298 59 1163 2621 604201191 604199766 3.170000e-160 575.0
19 TraesCS3B01G505200 chr1B 94.848 330 12 2 1 326 18354652 18354980 9.070000e-141 510.0
20 TraesCS3B01G505200 chr1B 83.742 326 37 8 1 322 451608724 451608411 9.940000e-76 294.0
21 TraesCS3B01G505200 chr1B 72.629 928 206 36 1163 2080 604204546 604203657 2.800000e-66 263.0
22 TraesCS3B01G505200 chr7B 95.738 657 26 2 2926 3580 74093329 74092673 0.000000e+00 1057.0
23 TraesCS3B01G505200 chr7B 95.144 659 25 4 2926 3580 624711355 624712010 0.000000e+00 1033.0
24 TraesCS3B01G505200 chr6B 95.552 652 25 3 2939 3586 21063405 21064056 0.000000e+00 1040.0
25 TraesCS3B01G505200 chr4B 95.107 654 27 4 2933 3583 174042080 174041429 0.000000e+00 1026.0
26 TraesCS3B01G505200 chr1A 75.628 1633 316 56 1044 2642 440669713 440668129 0.000000e+00 736.0
27 TraesCS3B01G505200 chr1D 74.908 1634 328 51 1044 2642 340983876 340982290 0.000000e+00 671.0
28 TraesCS3B01G505200 chr1D 74.866 1492 300 59 1154 2621 443960985 443962425 3.130000e-170 608.0
29 TraesCS3B01G505200 chr1D 72.454 599 131 23 1044 1637 341021189 341020620 1.050000e-35 161.0
30 TraesCS3B01G505200 chr2D 93.691 317 14 3 1 313 355447037 355447351 1.540000e-128 470.0
31 TraesCS3B01G505200 chr2D 72.367 1538 317 75 1154 2637 470240300 470238817 1.590000e-103 387.0
32 TraesCS3B01G505200 chr2B 72.650 1532 320 69 1154 2637 549249202 549247722 2.030000e-112 416.0
33 TraesCS3B01G505200 chr2B 87.892 223 22 3 104 322 98450710 98450931 1.300000e-64 257.0
34 TraesCS3B01G505200 chr5B 91.635 263 18 3 65 324 77853505 77853244 9.670000e-96 361.0
35 TraesCS3B01G505200 chr2A 71.558 1547 327 72 1154 2634 612079831 612078332 7.630000e-82 315.0
36 TraesCS3B01G505200 chr5D 94.737 38 1 1 2844 2880 228255639 228255602 1.420000e-04 58.4
37 TraesCS3B01G505200 chr7D 89.130 46 3 2 2850 2893 88037778 88037733 5.110000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G505200 chr3B 749483865 749487526 3661 False 3422.7 6763 95.9015 1 3662 2 chr3B.!!$F2 3661
1 TraesCS3B01G505200 chr3B 749490823 749492482 1659 False 1563.0 1563 84.1320 1045 2667 1 chr3B.!!$F1 1622
2 TraesCS3B01G505200 chr3B 321771979 321772638 659 True 1022.0 1022 94.6970 2926 3581 1 chr3B.!!$R1 655
3 TraesCS3B01G505200 chr3D 562178139 562180289 2150 False 3044.0 3044 92.3860 764 2899 1 chr3D.!!$F3 2135
4 TraesCS3B01G505200 chr3D 559108829 559109504 675 False 1018.0 1018 93.9440 2927 3598 1 chr3D.!!$F1 671
5 TraesCS3B01G505200 chr3D 562204808 562207154 2346 False 546.0 595 84.0910 1295 2562 2 chr3D.!!$F4 1267
6 TraesCS3B01G505200 chr3A 697507048 697508789 1741 False 2431.0 2431 91.9250 920 2667 1 chr3A.!!$F2 1747
7 TraesCS3B01G505200 chr6D 100346041 100347701 1660 False 1605.0 1605 84.3750 1001 2667 1 chr6D.!!$F1 1666
8 TraesCS3B01G505200 chr1B 269218255 269218900 645 True 1062.0 1062 96.4400 2942 3584 1 chr1B.!!$R2 642
9 TraesCS3B01G505200 chr1B 25227107 25227760 653 True 1040.0 1040 95.4130 2931 3583 1 chr1B.!!$R1 652
10 TraesCS3B01G505200 chr1B 390272480 390273123 643 False 1033.0 1033 95.6520 2939 3580 1 chr1B.!!$F2 641
11 TraesCS3B01G505200 chr1B 456432139 456433753 1614 True 702.0 702 75.1350 1044 2667 1 chr1B.!!$R4 1623
12 TraesCS3B01G505200 chr1B 603744943 603746383 1440 False 592.0 592 74.6310 1154 2621 1 chr1B.!!$F3 1467
13 TraesCS3B01G505200 chr1B 604199766 604204546 4780 True 419.0 575 73.5950 1163 2621 2 chr1B.!!$R5 1458
14 TraesCS3B01G505200 chr7B 74092673 74093329 656 True 1057.0 1057 95.7380 2926 3580 1 chr7B.!!$R1 654
15 TraesCS3B01G505200 chr7B 624711355 624712010 655 False 1033.0 1033 95.1440 2926 3580 1 chr7B.!!$F1 654
16 TraesCS3B01G505200 chr6B 21063405 21064056 651 False 1040.0 1040 95.5520 2939 3586 1 chr6B.!!$F1 647
17 TraesCS3B01G505200 chr4B 174041429 174042080 651 True 1026.0 1026 95.1070 2933 3583 1 chr4B.!!$R1 650
18 TraesCS3B01G505200 chr1A 440668129 440669713 1584 True 736.0 736 75.6280 1044 2642 1 chr1A.!!$R1 1598
19 TraesCS3B01G505200 chr1D 340982290 340983876 1586 True 671.0 671 74.9080 1044 2642 1 chr1D.!!$R1 1598
20 TraesCS3B01G505200 chr1D 443960985 443962425 1440 False 608.0 608 74.8660 1154 2621 1 chr1D.!!$F1 1467
21 TraesCS3B01G505200 chr2D 470238817 470240300 1483 True 387.0 387 72.3670 1154 2637 1 chr2D.!!$R1 1483
22 TraesCS3B01G505200 chr2B 549247722 549249202 1480 True 416.0 416 72.6500 1154 2637 1 chr2B.!!$R1 1483
23 TraesCS3B01G505200 chr2A 612078332 612079831 1499 True 315.0 315 71.5580 1154 2634 1 chr2A.!!$R1 1480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.031515 TAGGGGGAGAGAAATGGCGA 60.032 55.0 0.00 0.0 0.00 5.54 F
236 237 0.035439 GGAAAACCTGGGCTCGATCA 60.035 55.0 0.00 0.0 0.00 2.92 F
510 511 0.107214 TTGGGAGCTCCTATTTGGCG 60.107 55.0 31.36 0.0 36.20 5.69 F
525 526 0.107643 TGGCGTGTTCAACATGAGGA 59.892 50.0 14.27 0.0 37.29 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 3722 1.116536 TGCCGGTGGTGTAGAACTCA 61.117 55.000 1.90 0.0 0.00 3.41 R
2110 4392 1.591327 GCTCTAGCTTCAGCCGCTC 60.591 63.158 5.46 0.0 43.38 5.03 R
2649 6068 3.063180 CGCACAAAATTCAGCCAAAAACA 59.937 39.130 0.00 0.0 0.00 2.83 R
2669 6088 0.037232 ACCAGAAGCCTGTAAGACGC 60.037 55.000 0.00 0.0 38.74 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.019951 GCGGTTGAACTCGCGAAGA 61.020 57.895 11.33 0.00 42.48 2.87
32 33 1.554042 GCGGTTGAACTCGCGAAGAA 61.554 55.000 11.33 0.00 42.48 2.52
33 34 1.068474 CGGTTGAACTCGCGAAGAAT 58.932 50.000 11.33 0.00 0.00 2.40
34 35 2.256174 CGGTTGAACTCGCGAAGAATA 58.744 47.619 11.33 0.00 0.00 1.75
36 37 2.603560 GGTTGAACTCGCGAAGAATAGG 59.396 50.000 11.33 0.00 0.00 2.57
38 39 1.136305 TGAACTCGCGAAGAATAGGGG 59.864 52.381 11.33 0.00 0.00 4.79
39 40 0.464452 AACTCGCGAAGAATAGGGGG 59.536 55.000 11.33 0.00 0.00 5.40
40 41 0.396695 ACTCGCGAAGAATAGGGGGA 60.397 55.000 11.33 0.00 0.00 4.81
41 42 0.315568 CTCGCGAAGAATAGGGGGAG 59.684 60.000 11.33 0.00 33.97 4.30
42 43 0.106369 TCGCGAAGAATAGGGGGAGA 60.106 55.000 6.20 0.00 0.00 3.71
43 44 0.315568 CGCGAAGAATAGGGGGAGAG 59.684 60.000 0.00 0.00 0.00 3.20
44 45 1.705873 GCGAAGAATAGGGGGAGAGA 58.294 55.000 0.00 0.00 0.00 3.10
45 46 2.040178 GCGAAGAATAGGGGGAGAGAA 58.960 52.381 0.00 0.00 0.00 2.87
48 49 4.636249 CGAAGAATAGGGGGAGAGAAATG 58.364 47.826 0.00 0.00 0.00 2.32
49 50 4.503991 CGAAGAATAGGGGGAGAGAAATGG 60.504 50.000 0.00 0.00 0.00 3.16
51 52 1.059913 ATAGGGGGAGAGAAATGGCG 58.940 55.000 0.00 0.00 0.00 5.69
52 53 0.031515 TAGGGGGAGAGAAATGGCGA 60.032 55.000 0.00 0.00 0.00 5.54
53 54 1.153147 GGGGGAGAGAAATGGCGAC 60.153 63.158 0.00 0.00 0.00 5.19
55 56 1.515954 GGGAGAGAAATGGCGACGA 59.484 57.895 0.00 0.00 0.00 4.20
58 59 0.456221 GAGAGAAATGGCGACGAGGA 59.544 55.000 0.00 0.00 0.00 3.71
60 61 0.528684 GAGAAATGGCGACGAGGAGG 60.529 60.000 0.00 0.00 0.00 4.30
61 62 1.521681 GAAATGGCGACGAGGAGGG 60.522 63.158 0.00 0.00 0.00 4.30
62 63 1.956629 GAAATGGCGACGAGGAGGGA 61.957 60.000 0.00 0.00 0.00 4.20
64 65 2.856039 AATGGCGACGAGGAGGGAGA 62.856 60.000 0.00 0.00 0.00 3.71
65 66 3.213402 GGCGACGAGGAGGGAGAG 61.213 72.222 0.00 0.00 0.00 3.20
67 68 2.590645 CGACGAGGAGGGAGAGGA 59.409 66.667 0.00 0.00 0.00 3.71
68 69 1.149627 CGACGAGGAGGGAGAGGAT 59.850 63.158 0.00 0.00 0.00 3.24
69 70 0.466555 CGACGAGGAGGGAGAGGATT 60.467 60.000 0.00 0.00 0.00 3.01
72 73 1.118356 CGAGGAGGGAGAGGATTGGG 61.118 65.000 0.00 0.00 0.00 4.12
73 74 0.766288 GAGGAGGGAGAGGATTGGGG 60.766 65.000 0.00 0.00 0.00 4.96
91 92 2.520968 GGATTCGGGGGATTGGGG 59.479 66.667 0.00 0.00 0.00 4.96
95 96 4.686437 TCGGGGGATTGGGGTGGT 62.686 66.667 0.00 0.00 0.00 4.16
96 97 4.440829 CGGGGGATTGGGGTGGTG 62.441 72.222 0.00 0.00 0.00 4.17
97 98 4.074408 GGGGGATTGGGGTGGTGG 62.074 72.222 0.00 0.00 0.00 4.61
98 99 4.074408 GGGGATTGGGGTGGTGGG 62.074 72.222 0.00 0.00 0.00 4.61
99 100 4.074408 GGGATTGGGGTGGTGGGG 62.074 72.222 0.00 0.00 0.00 4.96
100 101 3.272847 GGATTGGGGTGGTGGGGT 61.273 66.667 0.00 0.00 0.00 4.95
101 102 2.037208 GATTGGGGTGGTGGGGTG 59.963 66.667 0.00 0.00 0.00 4.61
102 103 2.453497 ATTGGGGTGGTGGGGTGA 60.453 61.111 0.00 0.00 0.00 4.02
120 121 4.385405 GCGGTGGCTCTGAGCAGT 62.385 66.667 28.95 0.00 44.75 4.40
121 122 2.345244 CGGTGGCTCTGAGCAGTT 59.655 61.111 28.95 0.00 44.75 3.16
124 125 1.294659 GGTGGCTCTGAGCAGTTTCG 61.295 60.000 28.95 0.00 44.75 3.46
125 126 0.319900 GTGGCTCTGAGCAGTTTCGA 60.320 55.000 28.95 2.91 44.75 3.71
127 128 1.002430 TGGCTCTGAGCAGTTTCGAAT 59.998 47.619 28.95 0.00 44.75 3.34
128 129 2.233676 TGGCTCTGAGCAGTTTCGAATA 59.766 45.455 28.95 1.57 44.75 1.75
129 130 2.605366 GGCTCTGAGCAGTTTCGAATAC 59.395 50.000 28.95 5.29 44.75 1.89
130 131 3.254060 GCTCTGAGCAGTTTCGAATACA 58.746 45.455 24.02 0.00 41.89 2.29
131 132 3.679980 GCTCTGAGCAGTTTCGAATACAA 59.320 43.478 24.02 0.00 41.89 2.41
132 133 4.434857 GCTCTGAGCAGTTTCGAATACAAC 60.435 45.833 24.02 0.00 41.89 3.32
135 136 1.463444 AGCAGTTTCGAATACAACGCC 59.537 47.619 0.00 0.00 0.00 5.68
137 138 2.350007 GCAGTTTCGAATACAACGCCAA 60.350 45.455 0.00 0.00 0.00 4.52
138 139 3.223157 CAGTTTCGAATACAACGCCAAC 58.777 45.455 0.00 0.00 0.00 3.77
140 141 0.791422 TTCGAATACAACGCCAACGG 59.209 50.000 0.00 0.00 46.04 4.44
141 142 0.038435 TCGAATACAACGCCAACGGA 60.038 50.000 0.00 0.00 46.04 4.69
142 143 0.094046 CGAATACAACGCCAACGGAC 59.906 55.000 0.00 0.00 46.04 4.79
143 144 1.149987 GAATACAACGCCAACGGACA 58.850 50.000 0.00 0.00 46.04 4.02
144 145 1.532007 GAATACAACGCCAACGGACAA 59.468 47.619 0.00 0.00 46.04 3.18
145 146 1.153353 ATACAACGCCAACGGACAAG 58.847 50.000 0.00 0.00 46.04 3.16
146 147 0.104487 TACAACGCCAACGGACAAGA 59.896 50.000 0.00 0.00 46.04 3.02
148 149 2.241880 AACGCCAACGGACAAGACG 61.242 57.895 0.00 0.00 46.04 4.18
150 151 2.935955 GCCAACGGACAAGACGTG 59.064 61.111 0.00 0.00 44.83 4.49
151 152 1.885850 GCCAACGGACAAGACGTGT 60.886 57.895 0.00 0.00 44.83 4.49
152 153 1.931551 CCAACGGACAAGACGTGTG 59.068 57.895 0.00 0.00 44.83 3.82
153 154 1.495584 CCAACGGACAAGACGTGTGG 61.496 60.000 0.00 0.00 44.83 4.17
154 155 1.227438 AACGGACAAGACGTGTGGG 60.227 57.895 0.00 0.00 44.83 4.61
155 156 1.963464 AACGGACAAGACGTGTGGGT 61.963 55.000 0.00 0.00 44.83 4.51
156 157 1.108727 ACGGACAAGACGTGTGGGTA 61.109 55.000 0.00 0.00 43.78 3.69
158 159 0.677842 GGACAAGACGTGTGGGTAGT 59.322 55.000 0.00 0.00 41.96 2.73
159 160 1.888512 GGACAAGACGTGTGGGTAGTA 59.111 52.381 0.00 0.00 41.96 1.82
161 162 2.555757 GACAAGACGTGTGGGTAGTAGT 59.444 50.000 0.00 0.00 41.96 2.73
162 163 2.295349 ACAAGACGTGTGGGTAGTAGTG 59.705 50.000 0.00 0.00 39.72 2.74
166 167 1.600638 GTGTGGGTAGTAGTGGGCC 59.399 63.158 0.00 0.00 0.00 5.80
168 169 1.306739 GTGGGTAGTAGTGGGCCCT 60.307 63.158 25.70 5.93 41.59 5.19
169 170 1.002533 TGGGTAGTAGTGGGCCCTC 59.997 63.158 25.70 20.95 41.59 4.30
182 183 1.439543 GGCCCTCCCAGATGAATAGT 58.560 55.000 0.00 0.00 0.00 2.12
183 184 1.777272 GGCCCTCCCAGATGAATAGTT 59.223 52.381 0.00 0.00 0.00 2.24
184 185 2.487986 GGCCCTCCCAGATGAATAGTTG 60.488 54.545 0.00 0.00 0.00 3.16
185 186 2.173569 GCCCTCCCAGATGAATAGTTGT 59.826 50.000 0.00 0.00 0.00 3.32
186 187 3.745797 GCCCTCCCAGATGAATAGTTGTC 60.746 52.174 0.00 0.00 0.00 3.18
187 188 3.493350 CCCTCCCAGATGAATAGTTGTCG 60.493 52.174 0.00 0.00 0.00 4.35
189 190 1.860950 CCCAGATGAATAGTTGTCGCG 59.139 52.381 0.00 0.00 0.00 5.87
191 192 1.860950 CAGATGAATAGTTGTCGCGGG 59.139 52.381 6.13 0.00 0.00 6.13
194 195 0.174845 TGAATAGTTGTCGCGGGAGG 59.825 55.000 6.13 0.00 0.00 4.30
195 196 1.152383 GAATAGTTGTCGCGGGAGGC 61.152 60.000 6.13 0.00 38.69 4.70
196 197 2.588856 AATAGTTGTCGCGGGAGGCC 62.589 60.000 6.13 0.00 38.94 5.19
208 209 4.790861 GAGGCCGAACCGTCCGTC 62.791 72.222 0.00 0.00 46.52 4.79
212 213 3.367743 CCGAACCGTCCGTCCTGA 61.368 66.667 0.00 0.00 0.00 3.86
213 214 2.126580 CGAACCGTCCGTCCTGAC 60.127 66.667 0.00 0.00 0.00 3.51
214 215 2.260743 GAACCGTCCGTCCTGACC 59.739 66.667 0.00 0.00 31.35 4.02
215 216 2.522436 AACCGTCCGTCCTGACCA 60.522 61.111 0.00 0.00 31.35 4.02
216 217 2.488087 GAACCGTCCGTCCTGACCAG 62.488 65.000 0.00 0.00 31.35 4.00
233 234 2.754375 GGGAAAACCTGGGCTCGA 59.246 61.111 0.00 0.00 35.85 4.04
234 235 1.303282 GGGAAAACCTGGGCTCGAT 59.697 57.895 0.00 0.00 35.85 3.59
235 236 0.748367 GGGAAAACCTGGGCTCGATC 60.748 60.000 0.00 0.00 35.85 3.69
236 237 0.035439 GGAAAACCTGGGCTCGATCA 60.035 55.000 0.00 0.00 0.00 2.92
237 238 1.087501 GAAAACCTGGGCTCGATCAC 58.912 55.000 0.00 0.00 0.00 3.06
238 239 0.673644 AAAACCTGGGCTCGATCACG 60.674 55.000 0.00 0.00 41.26 4.35
264 265 3.494378 GACGAGATCGGACGGTGA 58.506 61.111 7.22 0.00 44.95 4.02
265 266 2.023318 GACGAGATCGGACGGTGAT 58.977 57.895 7.22 0.00 44.95 3.06
266 267 1.224075 GACGAGATCGGACGGTGATA 58.776 55.000 7.22 0.00 44.95 2.15
267 268 1.600957 GACGAGATCGGACGGTGATAA 59.399 52.381 7.22 0.00 44.95 1.75
268 269 2.019249 ACGAGATCGGACGGTGATAAA 58.981 47.619 7.22 0.00 44.95 1.40
269 270 2.424601 ACGAGATCGGACGGTGATAAAA 59.575 45.455 7.22 0.00 44.95 1.52
271 272 3.381949 GAGATCGGACGGTGATAAAAGG 58.618 50.000 0.00 0.00 0.00 3.11
272 273 2.764572 AGATCGGACGGTGATAAAAGGT 59.235 45.455 0.00 0.00 0.00 3.50
273 274 2.373540 TCGGACGGTGATAAAAGGTG 57.626 50.000 0.00 0.00 0.00 4.00
276 277 2.774687 GGACGGTGATAAAAGGTGTGT 58.225 47.619 0.00 0.00 0.00 3.72
279 280 2.151202 CGGTGATAAAAGGTGTGTGCT 58.849 47.619 0.00 0.00 0.00 4.40
281 282 2.159627 GGTGATAAAAGGTGTGTGCTCG 59.840 50.000 0.00 0.00 0.00 5.03
282 283 3.064207 GTGATAAAAGGTGTGTGCTCGA 58.936 45.455 0.00 0.00 0.00 4.04
283 284 3.496884 GTGATAAAAGGTGTGTGCTCGAA 59.503 43.478 0.00 0.00 0.00 3.71
285 286 0.655733 AAAAGGTGTGTGCTCGAACG 59.344 50.000 0.00 0.00 0.00 3.95
286 287 0.461339 AAAGGTGTGTGCTCGAACGT 60.461 50.000 0.00 0.00 0.00 3.99
287 288 1.151777 AAGGTGTGTGCTCGAACGTG 61.152 55.000 0.00 0.00 0.00 4.49
289 290 1.558383 GTGTGTGCTCGAACGTGAC 59.442 57.895 0.00 0.00 0.00 3.67
290 291 1.139947 TGTGTGCTCGAACGTGACA 59.860 52.632 0.00 0.54 0.00 3.58
291 292 0.458716 TGTGTGCTCGAACGTGACAA 60.459 50.000 0.00 0.00 0.00 3.18
295 296 0.874175 TGCTCGAACGTGACAACCAG 60.874 55.000 0.00 0.00 0.00 4.00
297 298 0.874175 CTCGAACGTGACAACCAGCA 60.874 55.000 0.00 0.00 0.00 4.41
298 299 0.249699 TCGAACGTGACAACCAGCAT 60.250 50.000 0.00 0.00 0.00 3.79
299 300 0.163788 CGAACGTGACAACCAGCATC 59.836 55.000 0.00 0.00 0.00 3.91
300 301 0.517316 GAACGTGACAACCAGCATCC 59.483 55.000 0.00 0.00 0.00 3.51
301 302 0.179032 AACGTGACAACCAGCATCCA 60.179 50.000 0.00 0.00 0.00 3.41
302 303 0.179032 ACGTGACAACCAGCATCCAA 60.179 50.000 0.00 0.00 0.00 3.53
303 304 1.167851 CGTGACAACCAGCATCCAAT 58.832 50.000 0.00 0.00 0.00 3.16
305 306 2.669113 CGTGACAACCAGCATCCAATTG 60.669 50.000 0.00 0.00 0.00 2.32
317 318 5.806366 GCATCCAATTGCTTTTTAGCATT 57.194 34.783 0.00 0.00 44.94 3.56
318 319 6.185852 GCATCCAATTGCTTTTTAGCATTT 57.814 33.333 0.00 1.45 44.94 2.32
319 320 7.306205 GCATCCAATTGCTTTTTAGCATTTA 57.694 32.000 0.00 0.00 44.94 1.40
320 321 7.404203 GCATCCAATTGCTTTTTAGCATTTAG 58.596 34.615 0.00 0.00 44.94 1.85
321 322 7.466320 GCATCCAATTGCTTTTTAGCATTTAGG 60.466 37.037 0.00 8.18 44.94 2.69
322 323 7.003402 TCCAATTGCTTTTTAGCATTTAGGT 57.997 32.000 0.00 0.00 44.94 3.08
323 324 7.449247 TCCAATTGCTTTTTAGCATTTAGGTT 58.551 30.769 0.00 0.00 44.94 3.50
324 325 7.936301 TCCAATTGCTTTTTAGCATTTAGGTTT 59.064 29.630 0.00 0.00 44.94 3.27
325 326 8.567104 CCAATTGCTTTTTAGCATTTAGGTTTT 58.433 29.630 0.00 0.00 44.94 2.43
326 327 9.949174 CAATTGCTTTTTAGCATTTAGGTTTTT 57.051 25.926 0.09 0.00 44.94 1.94
350 351 9.715121 TTTTTAGAGTTGTAATTCGTCTACCAT 57.285 29.630 0.00 0.00 0.00 3.55
354 355 7.263496 AGAGTTGTAATTCGTCTACCATAACC 58.737 38.462 0.00 0.00 0.00 2.85
355 356 6.938507 AGTTGTAATTCGTCTACCATAACCA 58.061 36.000 0.00 0.00 0.00 3.67
357 358 5.342433 TGTAATTCGTCTACCATAACCACG 58.658 41.667 0.00 0.00 0.00 4.94
358 359 2.945447 TTCGTCTACCATAACCACGG 57.055 50.000 0.00 0.00 0.00 4.94
361 362 1.404449 CGTCTACCATAACCACGGCAA 60.404 52.381 0.00 0.00 0.00 4.52
362 363 2.702261 GTCTACCATAACCACGGCAAA 58.298 47.619 0.00 0.00 0.00 3.68
363 364 3.075884 GTCTACCATAACCACGGCAAAA 58.924 45.455 0.00 0.00 0.00 2.44
364 365 3.502979 GTCTACCATAACCACGGCAAAAA 59.497 43.478 0.00 0.00 0.00 1.94
408 409 9.715121 TTTTTAGAGTTGTAATTCGTCTACCAT 57.285 29.630 0.00 0.00 0.00 3.55
411 412 9.793252 TTAGAGTTGTAATTCGTCTACCATAAC 57.207 33.333 0.00 0.00 0.00 1.89
412 413 7.263496 AGAGTTGTAATTCGTCTACCATAACC 58.737 38.462 0.00 0.00 0.00 2.85
413 414 6.938507 AGTTGTAATTCGTCTACCATAACCA 58.061 36.000 0.00 0.00 0.00 3.67
414 415 7.562135 AGTTGTAATTCGTCTACCATAACCAT 58.438 34.615 0.00 0.00 0.00 3.55
415 416 7.494625 AGTTGTAATTCGTCTACCATAACCATG 59.505 37.037 0.00 0.00 0.00 3.66
448 449 7.790782 AAATTGTCTACCATAATGGGTTTGT 57.209 32.000 0.00 0.00 43.37 2.83
449 450 8.887264 AAATTGTCTACCATAATGGGTTTGTA 57.113 30.769 0.00 0.00 43.37 2.41
450 451 8.519799 AATTGTCTACCATAATGGGTTTGTAG 57.480 34.615 0.00 0.00 43.37 2.74
452 453 5.190925 TGTCTACCATAATGGGTTTGTAGCT 59.809 40.000 0.00 0.00 43.37 3.32
453 454 5.527582 GTCTACCATAATGGGTTTGTAGCTG 59.472 44.000 0.00 0.00 43.37 4.24
454 455 3.023832 ACCATAATGGGTTTGTAGCTGC 58.976 45.455 0.00 0.00 43.37 5.25
456 457 2.137810 TAATGGGTTTGTAGCTGCCC 57.862 50.000 0.00 0.61 41.42 5.36
459 460 1.074951 GGGTTTGTAGCTGCCCACT 59.925 57.895 0.00 0.00 40.76 4.00
460 461 0.539669 GGGTTTGTAGCTGCCCACTT 60.540 55.000 0.00 0.00 40.76 3.16
461 462 0.598065 GGTTTGTAGCTGCCCACTTG 59.402 55.000 0.00 0.00 0.00 3.16
463 464 0.467106 TTTGTAGCTGCCCACTTGCA 60.467 50.000 0.00 0.00 39.37 4.08
464 465 0.467106 TTGTAGCTGCCCACTTGCAA 60.467 50.000 0.00 0.00 41.51 4.08
465 466 0.467106 TGTAGCTGCCCACTTGCAAA 60.467 50.000 0.00 0.00 41.51 3.68
466 467 0.673437 GTAGCTGCCCACTTGCAAAA 59.327 50.000 0.00 0.00 41.51 2.44
467 468 1.068434 GTAGCTGCCCACTTGCAAAAA 59.932 47.619 0.00 0.00 41.51 1.94
495 496 9.559732 AAAACTATGATTTTCCTTTTTCTTGGG 57.440 29.630 0.00 0.00 0.00 4.12
496 497 8.491045 AACTATGATTTTCCTTTTTCTTGGGA 57.509 30.769 0.00 0.00 0.00 4.37
497 498 8.127150 ACTATGATTTTCCTTTTTCTTGGGAG 57.873 34.615 0.00 0.00 0.00 4.30
499 500 4.901250 TGATTTTCCTTTTTCTTGGGAGCT 59.099 37.500 0.00 0.00 0.00 4.09
502 503 2.065799 TCCTTTTTCTTGGGAGCTCCT 58.934 47.619 31.36 0.00 36.20 3.69
503 504 3.256704 TCCTTTTTCTTGGGAGCTCCTA 58.743 45.455 31.36 24.44 36.20 2.94
504 505 3.852578 TCCTTTTTCTTGGGAGCTCCTAT 59.147 43.478 31.36 0.00 36.20 2.57
505 506 4.292306 TCCTTTTTCTTGGGAGCTCCTATT 59.708 41.667 31.36 0.00 36.20 1.73
507 508 5.105595 CCTTTTTCTTGGGAGCTCCTATTTG 60.106 44.000 31.36 18.10 36.20 2.32
509 510 1.212935 TCTTGGGAGCTCCTATTTGGC 59.787 52.381 31.36 13.93 36.20 4.52
510 511 0.107214 TTGGGAGCTCCTATTTGGCG 60.107 55.000 31.36 0.00 36.20 5.69
511 512 1.271840 TGGGAGCTCCTATTTGGCGT 61.272 55.000 31.36 0.00 36.20 5.68
512 513 0.815615 GGGAGCTCCTATTTGGCGTG 60.816 60.000 31.36 0.00 35.95 5.34
513 514 0.107654 GGAGCTCCTATTTGGCGTGT 60.108 55.000 26.25 0.00 35.26 4.49
514 515 1.679032 GGAGCTCCTATTTGGCGTGTT 60.679 52.381 26.25 0.00 35.26 3.32
516 517 1.003118 AGCTCCTATTTGGCGTGTTCA 59.997 47.619 0.00 0.00 35.26 3.18
517 518 1.810151 GCTCCTATTTGGCGTGTTCAA 59.190 47.619 0.00 0.00 35.26 2.69
520 521 3.417101 TCCTATTTGGCGTGTTCAACAT 58.583 40.909 0.00 0.00 35.26 2.71
521 522 3.190327 TCCTATTTGGCGTGTTCAACATG 59.810 43.478 5.27 5.27 38.13 3.21
523 524 2.772568 TTTGGCGTGTTCAACATGAG 57.227 45.000 14.27 0.20 37.29 2.90
524 525 0.950836 TTGGCGTGTTCAACATGAGG 59.049 50.000 14.27 0.00 37.29 3.86
525 526 0.107643 TGGCGTGTTCAACATGAGGA 59.892 50.000 14.27 0.00 37.29 3.71
526 527 1.234821 GGCGTGTTCAACATGAGGAA 58.765 50.000 14.27 0.00 37.29 3.36
528 529 2.350772 GGCGTGTTCAACATGAGGAAAG 60.351 50.000 14.27 0.00 37.29 2.62
529 530 2.918131 GCGTGTTCAACATGAGGAAAGC 60.918 50.000 14.27 5.86 37.29 3.51
530 531 2.549754 CGTGTTCAACATGAGGAAAGCT 59.450 45.455 3.37 0.00 37.29 3.74
532 533 4.540824 GTGTTCAACATGAGGAAAGCTTC 58.459 43.478 0.00 0.00 0.00 3.86
540 541 3.443925 GGAAAGCTTCCTGGCGCC 61.444 66.667 22.73 22.73 46.57 6.53
541 542 2.672996 GAAAGCTTCCTGGCGCCA 60.673 61.111 30.59 30.59 37.29 5.69
542 543 2.036256 AAAGCTTCCTGGCGCCAT 59.964 55.556 32.87 11.68 37.29 4.40
543 544 1.997928 GAAAGCTTCCTGGCGCCATC 61.998 60.000 32.87 18.45 37.29 3.51
549 550 3.882326 CCTGGCGCCATCCCTCAT 61.882 66.667 32.87 0.00 0.00 2.90
550 551 2.593725 CTGGCGCCATCCCTCATG 60.594 66.667 32.87 12.15 0.00 3.07
568 569 2.906897 GGCCGGCCCATGTACATG 60.907 66.667 36.64 26.02 38.51 3.21
582 583 4.764679 TGTACATGGCTCAATTGTTGAC 57.235 40.909 5.13 2.81 35.46 3.18
583 584 4.397420 TGTACATGGCTCAATTGTTGACT 58.603 39.130 5.13 0.00 35.46 3.41
584 585 4.826733 TGTACATGGCTCAATTGTTGACTT 59.173 37.500 5.13 0.00 35.46 3.01
586 587 6.488344 TGTACATGGCTCAATTGTTGACTTTA 59.512 34.615 5.13 0.00 35.46 1.85
588 589 5.769662 ACATGGCTCAATTGTTGACTTTAGA 59.230 36.000 5.13 0.00 35.46 2.10
589 590 5.947228 TGGCTCAATTGTTGACTTTAGAG 57.053 39.130 5.13 0.00 35.46 2.43
590 591 5.620206 TGGCTCAATTGTTGACTTTAGAGA 58.380 37.500 5.13 0.00 35.46 3.10
591 592 5.702670 TGGCTCAATTGTTGACTTTAGAGAG 59.297 40.000 5.13 0.00 35.46 3.20
592 593 5.934625 GGCTCAATTGTTGACTTTAGAGAGA 59.065 40.000 5.13 0.00 35.46 3.10
593 594 6.428159 GGCTCAATTGTTGACTTTAGAGAGAA 59.572 38.462 5.13 0.00 35.46 2.87
642 643 7.841915 AAAAAGACCGTGAATTCAAAAATGT 57.158 28.000 10.35 3.16 0.00 2.71
643 644 7.841915 AAAAGACCGTGAATTCAAAAATGTT 57.158 28.000 10.35 0.00 0.00 2.71
644 645 7.463469 AAAGACCGTGAATTCAAAAATGTTC 57.537 32.000 10.35 0.59 0.00 3.18
645 646 6.142818 AGACCGTGAATTCAAAAATGTTCA 57.857 33.333 10.35 0.00 0.00 3.18
646 647 6.748132 AGACCGTGAATTCAAAAATGTTCAT 58.252 32.000 10.35 0.00 33.65 2.57
647 648 7.881142 AGACCGTGAATTCAAAAATGTTCATA 58.119 30.769 10.35 0.00 33.65 2.15
648 649 8.023128 AGACCGTGAATTCAAAAATGTTCATAG 58.977 33.333 10.35 0.00 33.65 2.23
649 650 7.881142 ACCGTGAATTCAAAAATGTTCATAGA 58.119 30.769 10.35 0.00 33.65 1.98
650 651 8.522830 ACCGTGAATTCAAAAATGTTCATAGAT 58.477 29.630 10.35 0.00 33.65 1.98
651 652 9.357652 CCGTGAATTCAAAAATGTTCATAGATT 57.642 29.630 10.35 0.00 33.65 2.40
723 724 9.672673 AAAATTATCTCCTCTCGAAAATTCTCA 57.327 29.630 0.00 0.00 0.00 3.27
724 725 9.844257 AAATTATCTCCTCTCGAAAATTCTCAT 57.156 29.630 0.00 0.00 0.00 2.90
726 727 9.844257 ATTATCTCCTCTCGAAAATTCTCATTT 57.156 29.630 0.00 0.00 33.72 2.32
727 728 9.672673 TTATCTCCTCTCGAAAATTCTCATTTT 57.327 29.630 0.00 0.00 43.97 1.82
728 729 7.986085 TCTCCTCTCGAAAATTCTCATTTTT 57.014 32.000 0.00 0.00 41.79 1.94
748 749 4.910458 TTTTTCTCCTCTCGGGAATTCT 57.090 40.909 5.23 0.00 44.58 2.40
749 750 4.473477 TTTTCTCCTCTCGGGAATTCTC 57.527 45.455 5.23 0.00 44.58 2.87
750 751 3.390175 TTCTCCTCTCGGGAATTCTCT 57.610 47.619 3.32 0.00 44.58 3.10
751 752 2.660572 TCTCCTCTCGGGAATTCTCTG 58.339 52.381 3.32 0.31 44.58 3.35
752 753 2.024846 TCTCCTCTCGGGAATTCTCTGT 60.025 50.000 3.32 0.00 44.58 3.41
753 754 2.100584 CTCCTCTCGGGAATTCTCTGTG 59.899 54.545 3.32 1.80 44.58 3.66
754 755 1.472376 CCTCTCGGGAATTCTCTGTGC 60.472 57.143 3.32 0.00 37.23 4.57
756 757 1.902508 TCTCGGGAATTCTCTGTGCTT 59.097 47.619 3.32 0.00 0.00 3.91
758 759 2.675348 CTCGGGAATTCTCTGTGCTTTC 59.325 50.000 3.32 0.00 0.00 2.62
759 760 1.740025 CGGGAATTCTCTGTGCTTTCC 59.260 52.381 3.32 0.00 36.04 3.13
760 761 2.095461 GGGAATTCTCTGTGCTTTCCC 58.905 52.381 5.23 3.45 46.33 3.97
762 763 3.157087 GGAATTCTCTGTGCTTTCCCAA 58.843 45.455 5.23 0.00 31.60 4.12
782 783 1.611965 GAAGGAAGCTGGAGCCCAT 59.388 57.895 0.00 0.00 43.38 4.00
798 799 1.181098 CCATTCGGCCCCATTCATCC 61.181 60.000 0.00 0.00 0.00 3.51
799 800 0.467844 CATTCGGCCCCATTCATCCA 60.468 55.000 0.00 0.00 0.00 3.41
802 812 1.968017 CGGCCCCATTCATCCATCG 60.968 63.158 0.00 0.00 0.00 3.84
814 824 1.630126 ATCCATCGTCAGCCAGGCTT 61.630 55.000 12.86 0.00 36.40 4.35
836 846 2.682155 CCTAGGAGGCTGTTTCTGTC 57.318 55.000 1.05 0.00 0.00 3.51
837 847 1.208293 CCTAGGAGGCTGTTTCTGTCC 59.792 57.143 1.05 0.00 0.00 4.02
838 848 1.902508 CTAGGAGGCTGTTTCTGTCCA 59.097 52.381 0.00 0.00 0.00 4.02
840 850 1.707427 AGGAGGCTGTTTCTGTCCATT 59.293 47.619 0.00 0.00 0.00 3.16
842 852 2.489722 GGAGGCTGTTTCTGTCCATTTC 59.510 50.000 0.00 0.00 0.00 2.17
843 853 3.416156 GAGGCTGTTTCTGTCCATTTCT 58.584 45.455 0.00 0.00 0.00 2.52
844 854 4.565652 GGAGGCTGTTTCTGTCCATTTCTA 60.566 45.833 0.00 0.00 0.00 2.10
848 858 2.742053 TGTTTCTGTCCATTTCTAGCGC 59.258 45.455 0.00 0.00 0.00 5.92
925 936 1.467190 TGGTCCCCCAAATCCCACT 60.467 57.895 0.00 0.00 37.98 4.00
938 949 1.076727 CCCACTCAAACCCCCTTCC 59.923 63.158 0.00 0.00 0.00 3.46
1200 3394 2.443016 CTCCTCCTGGTCCTCCGG 60.443 72.222 0.00 0.00 39.70 5.14
1521 3722 2.281830 CCTCAAGAGGCCGAGTCTT 58.718 57.895 2.68 0.00 42.44 3.01
1600 3807 3.691342 CTTGGGGCGTCGAGGACA 61.691 66.667 13.85 3.52 32.09 4.02
2110 4392 1.869132 GCGCGCCAATACTTTGCAG 60.869 57.895 23.24 0.00 0.00 4.41
2649 6068 4.503714 TTCTTCCTCACCTGTTCAACTT 57.496 40.909 0.00 0.00 0.00 2.66
2667 6086 6.840075 TCAACTTGTTTTTGGCTGAATTTTG 58.160 32.000 0.00 0.00 0.00 2.44
2669 6088 6.180771 ACTTGTTTTTGGCTGAATTTTGTG 57.819 33.333 0.00 0.00 0.00 3.33
2670 6089 4.612932 TGTTTTTGGCTGAATTTTGTGC 57.387 36.364 0.00 0.00 0.00 4.57
2688 6108 0.037232 GCGTCTTACAGGCTTCTGGT 60.037 55.000 0.00 0.00 42.60 4.00
2703 6124 4.576463 GCTTCTGGTGTTCCTTACCATATG 59.424 45.833 0.00 0.00 46.41 1.78
2712 6133 6.926272 GTGTTCCTTACCATATGTGATCTCTC 59.074 42.308 1.24 0.00 0.00 3.20
2714 6135 4.767409 TCCTTACCATATGTGATCTCTCGG 59.233 45.833 1.24 0.00 0.00 4.63
2726 6147 1.227089 CTCTCGGGGACTTGATGCG 60.227 63.158 0.00 0.00 0.00 4.73
2740 6161 2.080693 TGATGCGTTGTGTGGGTATTC 58.919 47.619 0.00 0.00 0.00 1.75
2788 6209 4.003648 CACTTAAGTTCTCCATGTCCACC 58.996 47.826 5.07 0.00 0.00 4.61
2794 6215 0.398522 TCTCCATGTCCACCGCCTAT 60.399 55.000 0.00 0.00 0.00 2.57
2796 6217 1.227943 CCATGTCCACCGCCTATGG 60.228 63.158 0.00 0.00 38.71 2.74
2800 6221 0.402504 TGTCCACCGCCTATGGTTTT 59.597 50.000 0.00 0.00 41.38 2.43
2809 6230 2.097466 CGCCTATGGTTTTCATGTCCAC 59.903 50.000 0.00 0.00 37.30 4.02
2812 6233 0.887933 ATGGTTTTCATGTCCACCGC 59.112 50.000 0.00 0.00 34.22 5.68
2813 6234 0.179004 TGGTTTTCATGTCCACCGCT 60.179 50.000 0.00 0.00 31.24 5.52
2814 6235 0.521735 GGTTTTCATGTCCACCGCTC 59.478 55.000 0.00 0.00 0.00 5.03
2815 6236 0.165944 GTTTTCATGTCCACCGCTCG 59.834 55.000 0.00 0.00 0.00 5.03
2823 6244 3.141488 CCACCGCTCGGCTCTAGT 61.141 66.667 8.41 0.00 39.32 2.57
2899 6320 9.041354 AGTCTCATCTAACTCTTAGACCATTTT 57.959 33.333 0.00 0.00 44.43 1.82
2902 6323 9.535878 CTCATCTAACTCTTAGACCATTTTACC 57.464 37.037 0.00 0.00 44.43 2.85
2903 6324 9.268282 TCATCTAACTCTTAGACCATTTTACCT 57.732 33.333 0.00 0.00 44.43 3.08
3116 6539 5.223449 TCTTGTTAGGGTTTGTGTCCTAG 57.777 43.478 0.00 0.00 37.01 3.02
3178 6601 4.862823 GTCTCCCCGCCTAGCCCT 62.863 72.222 0.00 0.00 0.00 5.19
3213 6636 1.819632 CTAGCATCGTTGGTGGGCC 60.820 63.158 8.40 0.00 34.79 5.80
3260 6683 2.559698 TCTTTGGTGGATTTGCTCGA 57.440 45.000 0.00 0.00 0.00 4.04
3308 6731 2.289444 TGTGTCTTCGGTTTGGATCCTC 60.289 50.000 14.23 3.54 0.00 3.71
3326 6749 5.192327 TCCTCCCGATCTACGTTATTTTC 57.808 43.478 0.00 0.00 40.78 2.29
3496 6919 0.036105 TCGTCGCTAGGTGGTCTACA 60.036 55.000 0.00 0.00 0.00 2.74
3541 6964 4.403113 TCTGGTATTCGTTGTACTGCCATA 59.597 41.667 0.00 0.00 0.00 2.74
3608 7031 8.674607 ACTCTTAGACCATTTTATTTTAAGCGG 58.325 33.333 0.00 0.00 0.00 5.52
3609 7032 8.795842 TCTTAGACCATTTTATTTTAAGCGGA 57.204 30.769 0.00 0.00 0.00 5.54
3610 7033 8.889717 TCTTAGACCATTTTATTTTAAGCGGAG 58.110 33.333 0.00 0.00 0.00 4.63
3611 7034 8.795842 TTAGACCATTTTATTTTAAGCGGAGA 57.204 30.769 0.00 0.00 0.00 3.71
3612 7035 7.881775 AGACCATTTTATTTTAAGCGGAGAT 57.118 32.000 0.00 0.00 0.00 2.75
3613 7036 7.931275 AGACCATTTTATTTTAAGCGGAGATC 58.069 34.615 0.00 0.00 0.00 2.75
3614 7037 7.013369 AGACCATTTTATTTTAAGCGGAGATCC 59.987 37.037 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.068474 ATTCTTCGCGAGTTCAACCG 58.932 50.000 9.59 0.00 0.00 4.44
16 17 2.603560 CCCTATTCTTCGCGAGTTCAAC 59.396 50.000 9.59 0.00 0.00 3.18
17 18 2.418197 CCCCTATTCTTCGCGAGTTCAA 60.418 50.000 9.59 0.99 0.00 2.69
18 19 1.136305 CCCCTATTCTTCGCGAGTTCA 59.864 52.381 9.59 0.00 0.00 3.18
19 20 1.538419 CCCCCTATTCTTCGCGAGTTC 60.538 57.143 9.59 0.00 0.00 3.01
20 21 0.464452 CCCCCTATTCTTCGCGAGTT 59.536 55.000 9.59 0.00 0.00 3.01
21 22 0.396695 TCCCCCTATTCTTCGCGAGT 60.397 55.000 9.59 0.00 0.00 4.18
22 23 0.315568 CTCCCCCTATTCTTCGCGAG 59.684 60.000 9.59 3.89 0.00 5.03
23 24 0.106369 TCTCCCCCTATTCTTCGCGA 60.106 55.000 3.71 3.71 0.00 5.87
25 26 1.705873 TCTCTCCCCCTATTCTTCGC 58.294 55.000 0.00 0.00 0.00 4.70
27 28 4.748239 GCCATTTCTCTCCCCCTATTCTTC 60.748 50.000 0.00 0.00 0.00 2.87
28 29 3.139211 GCCATTTCTCTCCCCCTATTCTT 59.861 47.826 0.00 0.00 0.00 2.52
29 30 2.713708 GCCATTTCTCTCCCCCTATTCT 59.286 50.000 0.00 0.00 0.00 2.40
31 32 1.421646 CGCCATTTCTCTCCCCCTATT 59.578 52.381 0.00 0.00 0.00 1.73
32 33 1.059913 CGCCATTTCTCTCCCCCTAT 58.940 55.000 0.00 0.00 0.00 2.57
33 34 0.031515 TCGCCATTTCTCTCCCCCTA 60.032 55.000 0.00 0.00 0.00 3.53
34 35 1.306997 TCGCCATTTCTCTCCCCCT 60.307 57.895 0.00 0.00 0.00 4.79
36 37 1.521681 CGTCGCCATTTCTCTCCCC 60.522 63.158 0.00 0.00 0.00 4.81
38 39 0.528684 CCTCGTCGCCATTTCTCTCC 60.529 60.000 0.00 0.00 0.00 3.71
39 40 0.456221 TCCTCGTCGCCATTTCTCTC 59.544 55.000 0.00 0.00 0.00 3.20
40 41 0.457851 CTCCTCGTCGCCATTTCTCT 59.542 55.000 0.00 0.00 0.00 3.10
41 42 0.528684 CCTCCTCGTCGCCATTTCTC 60.529 60.000 0.00 0.00 0.00 2.87
42 43 1.517832 CCTCCTCGTCGCCATTTCT 59.482 57.895 0.00 0.00 0.00 2.52
43 44 1.521681 CCCTCCTCGTCGCCATTTC 60.522 63.158 0.00 0.00 0.00 2.17
44 45 1.961180 CTCCCTCCTCGTCGCCATTT 61.961 60.000 0.00 0.00 0.00 2.32
45 46 2.363795 TCCCTCCTCGTCGCCATT 60.364 61.111 0.00 0.00 0.00 3.16
48 49 3.213402 CTCTCCCTCCTCGTCGCC 61.213 72.222 0.00 0.00 0.00 5.54
49 50 2.969300 ATCCTCTCCCTCCTCGTCGC 62.969 65.000 0.00 0.00 0.00 5.19
51 52 1.036707 CAATCCTCTCCCTCCTCGTC 58.963 60.000 0.00 0.00 0.00 4.20
52 53 0.397816 CCAATCCTCTCCCTCCTCGT 60.398 60.000 0.00 0.00 0.00 4.18
53 54 1.118356 CCCAATCCTCTCCCTCCTCG 61.118 65.000 0.00 0.00 0.00 4.63
55 56 1.319799 CCCCAATCCTCTCCCTCCT 59.680 63.158 0.00 0.00 0.00 3.69
72 73 2.520968 CCAATCCCCCGAATCCCC 59.479 66.667 0.00 0.00 0.00 4.81
73 74 2.520968 CCCAATCCCCCGAATCCC 59.479 66.667 0.00 0.00 0.00 3.85
75 76 1.152756 CACCCCAATCCCCCGAATC 60.153 63.158 0.00 0.00 0.00 2.52
76 77 2.700185 CCACCCCAATCCCCCGAAT 61.700 63.158 0.00 0.00 0.00 3.34
77 78 3.343326 CCACCCCAATCCCCCGAA 61.343 66.667 0.00 0.00 0.00 4.30
80 81 4.074408 CCACCACCCCAATCCCCC 62.074 72.222 0.00 0.00 0.00 5.40
81 82 4.074408 CCCACCACCCCAATCCCC 62.074 72.222 0.00 0.00 0.00 4.81
82 83 4.074408 CCCCACCACCCCAATCCC 62.074 72.222 0.00 0.00 0.00 3.85
84 85 2.037208 CACCCCACCACCCCAATC 59.963 66.667 0.00 0.00 0.00 2.67
85 86 2.453497 TCACCCCACCACCCCAAT 60.453 61.111 0.00 0.00 0.00 3.16
86 87 3.182263 CTCACCCCACCACCCCAA 61.182 66.667 0.00 0.00 0.00 4.12
106 107 0.319900 TCGAAACTGCTCAGAGCCAC 60.320 55.000 20.16 5.77 41.51 5.01
107 108 0.392706 TTCGAAACTGCTCAGAGCCA 59.607 50.000 20.16 7.13 41.51 4.75
108 109 1.731720 ATTCGAAACTGCTCAGAGCC 58.268 50.000 20.16 2.72 41.51 4.70
109 110 3.254060 TGTATTCGAAACTGCTCAGAGC 58.746 45.455 16.21 16.21 42.82 4.09
111 112 3.673338 CGTTGTATTCGAAACTGCTCAGA 59.327 43.478 0.00 0.00 0.00 3.27
113 114 2.156891 GCGTTGTATTCGAAACTGCTCA 59.843 45.455 0.00 0.00 0.00 4.26
115 116 1.463444 GGCGTTGTATTCGAAACTGCT 59.537 47.619 0.00 0.00 0.00 4.24
116 117 1.195900 TGGCGTTGTATTCGAAACTGC 59.804 47.619 0.00 4.21 0.00 4.40
118 119 2.096614 CGTTGGCGTTGTATTCGAAACT 60.097 45.455 0.00 0.00 0.00 2.66
119 120 2.227556 CGTTGGCGTTGTATTCGAAAC 58.772 47.619 0.00 2.73 0.00 2.78
120 121 1.194997 CCGTTGGCGTTGTATTCGAAA 59.805 47.619 0.00 0.00 36.15 3.46
121 122 0.791422 CCGTTGGCGTTGTATTCGAA 59.209 50.000 0.00 0.00 36.15 3.71
124 125 1.149987 TGTCCGTTGGCGTTGTATTC 58.850 50.000 0.00 0.00 36.15 1.75
125 126 1.533731 CTTGTCCGTTGGCGTTGTATT 59.466 47.619 0.00 0.00 36.15 1.89
127 128 0.104487 TCTTGTCCGTTGGCGTTGTA 59.896 50.000 0.00 0.00 36.15 2.41
128 129 1.153329 TCTTGTCCGTTGGCGTTGT 60.153 52.632 0.00 0.00 36.15 3.32
129 130 1.278637 GTCTTGTCCGTTGGCGTTG 59.721 57.895 0.00 0.00 36.15 4.10
130 131 2.241880 CGTCTTGTCCGTTGGCGTT 61.242 57.895 0.00 0.00 36.15 4.84
131 132 2.660552 CGTCTTGTCCGTTGGCGT 60.661 61.111 0.00 0.00 36.15 5.68
132 133 2.660552 ACGTCTTGTCCGTTGGCG 60.661 61.111 0.00 0.00 34.28 5.69
135 136 1.495584 CCCACACGTCTTGTCCGTTG 61.496 60.000 0.00 0.00 35.67 4.10
137 138 1.108727 TACCCACACGTCTTGTCCGT 61.109 55.000 0.00 0.00 35.67 4.69
138 139 0.388134 CTACCCACACGTCTTGTCCG 60.388 60.000 0.00 0.00 35.67 4.79
139 140 0.677842 ACTACCCACACGTCTTGTCC 59.322 55.000 0.00 0.00 35.67 4.02
140 141 2.555757 ACTACTACCCACACGTCTTGTC 59.444 50.000 0.00 0.00 35.67 3.18
141 142 2.295349 CACTACTACCCACACGTCTTGT 59.705 50.000 0.00 0.00 39.97 3.16
142 143 2.352421 CCACTACTACCCACACGTCTTG 60.352 54.545 0.00 0.00 0.00 3.02
143 144 1.891150 CCACTACTACCCACACGTCTT 59.109 52.381 0.00 0.00 0.00 3.01
144 145 1.542492 CCACTACTACCCACACGTCT 58.458 55.000 0.00 0.00 0.00 4.18
145 146 0.529378 CCCACTACTACCCACACGTC 59.471 60.000 0.00 0.00 0.00 4.34
146 147 1.538687 GCCCACTACTACCCACACGT 61.539 60.000 0.00 0.00 0.00 4.49
148 149 1.600638 GGCCCACTACTACCCACAC 59.399 63.158 0.00 0.00 0.00 3.82
149 150 1.614226 GGGCCCACTACTACCCACA 60.614 63.158 19.95 0.00 42.33 4.17
150 151 1.306739 AGGGCCCACTACTACCCAC 60.307 63.158 27.56 0.00 45.45 4.61
151 152 1.002533 GAGGGCCCACTACTACCCA 59.997 63.158 27.56 0.00 45.45 4.51
152 153 1.765255 GGAGGGCCCACTACTACCC 60.765 68.421 27.56 7.61 43.17 3.69
153 154 3.967215 GGAGGGCCCACTACTACC 58.033 66.667 27.56 11.26 34.14 3.18
166 167 3.722147 CGACAACTATTCATCTGGGAGG 58.278 50.000 0.00 0.00 0.00 4.30
168 169 2.481276 CGCGACAACTATTCATCTGGGA 60.481 50.000 0.00 0.00 0.00 4.37
169 170 1.860950 CGCGACAACTATTCATCTGGG 59.139 52.381 0.00 0.00 0.00 4.45
172 173 1.754803 TCCCGCGACAACTATTCATCT 59.245 47.619 8.23 0.00 0.00 2.90
173 174 2.128035 CTCCCGCGACAACTATTCATC 58.872 52.381 8.23 0.00 0.00 2.92
174 175 1.202533 CCTCCCGCGACAACTATTCAT 60.203 52.381 8.23 0.00 0.00 2.57
175 176 0.174845 CCTCCCGCGACAACTATTCA 59.825 55.000 8.23 0.00 0.00 2.57
176 177 1.152383 GCCTCCCGCGACAACTATTC 61.152 60.000 8.23 0.00 0.00 1.75
177 178 1.153429 GCCTCCCGCGACAACTATT 60.153 57.895 8.23 0.00 0.00 1.73
178 179 2.499685 GCCTCCCGCGACAACTAT 59.500 61.111 8.23 0.00 0.00 2.12
195 196 3.367743 TCAGGACGGACGGTTCGG 61.368 66.667 14.20 0.00 0.00 4.30
196 197 2.126580 GTCAGGACGGACGGTTCG 60.127 66.667 7.40 7.40 0.00 3.95
197 198 2.260743 GGTCAGGACGGACGGTTC 59.739 66.667 0.00 0.00 38.70 3.62
199 200 2.989824 CTGGTCAGGACGGACGGT 60.990 66.667 0.00 0.00 38.70 4.83
216 217 0.748367 GATCGAGCCCAGGTTTTCCC 60.748 60.000 0.00 0.00 41.86 3.97
217 218 0.035439 TGATCGAGCCCAGGTTTTCC 60.035 55.000 0.00 0.00 41.05 3.13
218 219 1.087501 GTGATCGAGCCCAGGTTTTC 58.912 55.000 0.00 0.00 0.00 2.29
219 220 0.673644 CGTGATCGAGCCCAGGTTTT 60.674 55.000 0.00 0.00 39.71 2.43
220 221 1.079127 CGTGATCGAGCCCAGGTTT 60.079 57.895 0.00 0.00 39.71 3.27
221 222 2.579201 CGTGATCGAGCCCAGGTT 59.421 61.111 0.00 0.00 39.71 3.50
222 223 4.148825 GCGTGATCGAGCCCAGGT 62.149 66.667 0.00 0.00 39.71 4.00
248 249 1.671979 TTATCACCGTCCGATCTCGT 58.328 50.000 0.00 0.00 37.74 4.18
249 250 2.768833 TTTATCACCGTCCGATCTCG 57.231 50.000 0.00 0.00 39.44 4.04
250 251 3.181478 ACCTTTTATCACCGTCCGATCTC 60.181 47.826 0.00 0.00 0.00 2.75
251 252 2.764572 ACCTTTTATCACCGTCCGATCT 59.235 45.455 0.00 0.00 0.00 2.75
252 253 2.864343 CACCTTTTATCACCGTCCGATC 59.136 50.000 0.00 0.00 0.00 3.69
253 254 2.235402 ACACCTTTTATCACCGTCCGAT 59.765 45.455 0.00 0.00 0.00 4.18
254 255 1.619827 ACACCTTTTATCACCGTCCGA 59.380 47.619 0.00 0.00 0.00 4.55
255 256 1.730064 CACACCTTTTATCACCGTCCG 59.270 52.381 0.00 0.00 0.00 4.79
258 259 1.877443 GCACACACCTTTTATCACCGT 59.123 47.619 0.00 0.00 0.00 4.83
259 260 2.151202 AGCACACACCTTTTATCACCG 58.849 47.619 0.00 0.00 0.00 4.94
260 261 2.159627 CGAGCACACACCTTTTATCACC 59.840 50.000 0.00 0.00 0.00 4.02
262 263 3.394674 TCGAGCACACACCTTTTATCA 57.605 42.857 0.00 0.00 0.00 2.15
264 265 2.478894 CGTTCGAGCACACACCTTTTAT 59.521 45.455 0.00 0.00 0.00 1.40
265 266 1.862201 CGTTCGAGCACACACCTTTTA 59.138 47.619 0.00 0.00 0.00 1.52
266 267 0.655733 CGTTCGAGCACACACCTTTT 59.344 50.000 0.00 0.00 0.00 2.27
267 268 0.461339 ACGTTCGAGCACACACCTTT 60.461 50.000 0.00 0.00 0.00 3.11
268 269 1.143183 ACGTTCGAGCACACACCTT 59.857 52.632 0.00 0.00 0.00 3.50
269 270 1.591594 CACGTTCGAGCACACACCT 60.592 57.895 0.00 0.00 0.00 4.00
271 272 1.143373 TGTCACGTTCGAGCACACAC 61.143 55.000 0.00 0.00 0.00 3.82
272 273 0.458716 TTGTCACGTTCGAGCACACA 60.459 50.000 0.00 0.00 0.00 3.72
273 274 0.043310 GTTGTCACGTTCGAGCACAC 60.043 55.000 0.00 0.00 0.00 3.82
276 277 0.874175 CTGGTTGTCACGTTCGAGCA 60.874 55.000 0.00 8.64 0.00 4.26
279 280 0.249699 ATGCTGGTTGTCACGTTCGA 60.250 50.000 0.00 0.00 0.00 3.71
281 282 0.517316 GGATGCTGGTTGTCACGTTC 59.483 55.000 0.00 0.00 0.00 3.95
282 283 0.179032 TGGATGCTGGTTGTCACGTT 60.179 50.000 0.00 0.00 0.00 3.99
283 284 0.179032 TTGGATGCTGGTTGTCACGT 60.179 50.000 0.00 0.00 0.00 4.49
285 286 2.927871 GCAATTGGATGCTGGTTGTCAC 60.928 50.000 7.72 0.00 43.06 3.67
286 287 1.273048 GCAATTGGATGCTGGTTGTCA 59.727 47.619 7.72 0.00 43.06 3.58
287 288 2.000429 GCAATTGGATGCTGGTTGTC 58.000 50.000 7.72 0.00 43.06 3.18
324 325 9.715121 ATGGTAGACGAATTACAACTCTAAAAA 57.285 29.630 0.00 0.00 0.00 1.94
327 328 9.793252 GTTATGGTAGACGAATTACAACTCTAA 57.207 33.333 0.00 0.00 0.00 2.10
328 329 8.408601 GGTTATGGTAGACGAATTACAACTCTA 58.591 37.037 0.00 0.00 0.00 2.43
329 330 7.093640 TGGTTATGGTAGACGAATTACAACTCT 60.094 37.037 0.00 0.00 0.00 3.24
331 332 6.815142 GTGGTTATGGTAGACGAATTACAACT 59.185 38.462 0.00 0.00 0.00 3.16
332 333 6.237648 CGTGGTTATGGTAGACGAATTACAAC 60.238 42.308 0.00 0.00 31.71 3.32
333 334 5.806502 CGTGGTTATGGTAGACGAATTACAA 59.193 40.000 0.00 0.00 31.71 2.41
334 335 5.342433 CGTGGTTATGGTAGACGAATTACA 58.658 41.667 0.00 0.00 31.71 2.41
335 336 4.741676 CCGTGGTTATGGTAGACGAATTAC 59.258 45.833 0.00 0.00 31.71 1.89
336 337 4.737352 GCCGTGGTTATGGTAGACGAATTA 60.737 45.833 0.00 0.00 35.28 1.40
337 338 3.788937 CCGTGGTTATGGTAGACGAATT 58.211 45.455 0.00 0.00 31.71 2.17
338 339 2.482490 GCCGTGGTTATGGTAGACGAAT 60.482 50.000 0.00 0.00 35.28 3.34
339 340 1.135024 GCCGTGGTTATGGTAGACGAA 60.135 52.381 0.00 0.00 35.28 3.85
342 343 2.389962 TTGCCGTGGTTATGGTAGAC 57.610 50.000 0.00 0.00 35.28 2.59
343 344 3.420300 TTTTGCCGTGGTTATGGTAGA 57.580 42.857 0.00 0.00 35.28 2.59
382 383 9.715121 ATGGTAGACGAATTACAACTCTAAAAA 57.285 29.630 0.00 0.00 0.00 1.94
385 386 9.793252 GTTATGGTAGACGAATTACAACTCTAA 57.207 33.333 0.00 0.00 0.00 2.10
386 387 8.408601 GGTTATGGTAGACGAATTACAACTCTA 58.591 37.037 0.00 0.00 0.00 2.43
387 388 7.093640 TGGTTATGGTAGACGAATTACAACTCT 60.094 37.037 0.00 0.00 0.00 3.24
388 389 7.037438 TGGTTATGGTAGACGAATTACAACTC 58.963 38.462 0.00 0.00 0.00 3.01
389 390 6.938507 TGGTTATGGTAGACGAATTACAACT 58.061 36.000 0.00 0.00 0.00 3.16
390 391 7.627340 CATGGTTATGGTAGACGAATTACAAC 58.373 38.462 0.00 0.00 0.00 3.32
422 423 8.655901 ACAAACCCATTATGGTAGACAATTTTT 58.344 29.630 10.65 0.00 37.76 1.94
424 425 7.790782 ACAAACCCATTATGGTAGACAATTT 57.209 32.000 10.65 0.00 37.76 1.82
425 426 7.068226 GCTACAAACCCATTATGGTAGACAATT 59.932 37.037 10.65 0.00 37.76 2.32
426 427 6.546034 GCTACAAACCCATTATGGTAGACAAT 59.454 38.462 10.65 0.00 37.76 2.71
427 428 5.883673 GCTACAAACCCATTATGGTAGACAA 59.116 40.000 10.65 0.00 37.76 3.18
428 429 5.190925 AGCTACAAACCCATTATGGTAGACA 59.809 40.000 10.65 0.00 37.76 3.41
429 430 5.527582 CAGCTACAAACCCATTATGGTAGAC 59.472 44.000 10.65 2.41 37.76 2.59
430 431 5.680619 CAGCTACAAACCCATTATGGTAGA 58.319 41.667 10.65 0.00 37.76 2.59
431 432 4.275936 GCAGCTACAAACCCATTATGGTAG 59.724 45.833 10.65 6.04 37.76 3.18
433 434 3.023832 GCAGCTACAAACCCATTATGGT 58.976 45.455 10.65 0.00 41.55 3.55
434 435 2.362077 GGCAGCTACAAACCCATTATGG 59.638 50.000 3.85 3.85 37.25 2.74
435 436 2.362077 GGGCAGCTACAAACCCATTATG 59.638 50.000 0.00 0.00 42.33 1.90
436 437 2.666317 GGGCAGCTACAAACCCATTAT 58.334 47.619 0.00 0.00 42.33 1.28
437 438 2.137810 GGGCAGCTACAAACCCATTA 57.862 50.000 0.00 0.00 42.33 1.90
438 439 2.976099 GGGCAGCTACAAACCCATT 58.024 52.632 0.00 0.00 42.33 3.16
439 440 4.764143 GGGCAGCTACAAACCCAT 57.236 55.556 0.00 0.00 42.33 4.00
443 444 0.039165 GCAAGTGGGCAGCTACAAAC 60.039 55.000 0.00 0.00 0.00 2.93
444 445 0.467106 TGCAAGTGGGCAGCTACAAA 60.467 50.000 0.00 0.00 39.25 2.83
445 446 0.467106 TTGCAAGTGGGCAGCTACAA 60.467 50.000 0.00 0.00 45.88 2.41
446 447 0.467106 TTTGCAAGTGGGCAGCTACA 60.467 50.000 0.00 0.00 45.88 2.74
447 448 0.673437 TTTTGCAAGTGGGCAGCTAC 59.327 50.000 0.00 0.00 45.88 3.58
448 449 1.407936 TTTTTGCAAGTGGGCAGCTA 58.592 45.000 0.00 0.00 45.88 3.32
449 450 2.210424 TTTTTGCAAGTGGGCAGCT 58.790 47.368 0.00 0.00 45.88 4.24
450 451 4.852962 TTTTTGCAAGTGGGCAGC 57.147 50.000 0.00 0.00 45.88 5.25
469 470 9.559732 CCCAAGAAAAAGGAAAATCATAGTTTT 57.440 29.630 0.00 0.00 34.19 2.43
470 471 8.933653 TCCCAAGAAAAAGGAAAATCATAGTTT 58.066 29.630 0.00 0.00 0.00 2.66
471 472 8.491045 TCCCAAGAAAAAGGAAAATCATAGTT 57.509 30.769 0.00 0.00 0.00 2.24
472 473 7.310052 GCTCCCAAGAAAAAGGAAAATCATAGT 60.310 37.037 0.00 0.00 0.00 2.12
473 474 7.038048 GCTCCCAAGAAAAAGGAAAATCATAG 58.962 38.462 0.00 0.00 0.00 2.23
474 475 6.725834 AGCTCCCAAGAAAAAGGAAAATCATA 59.274 34.615 0.00 0.00 0.00 2.15
475 476 5.545335 AGCTCCCAAGAAAAAGGAAAATCAT 59.455 36.000 0.00 0.00 0.00 2.45
476 477 4.901250 AGCTCCCAAGAAAAAGGAAAATCA 59.099 37.500 0.00 0.00 0.00 2.57
477 478 5.473931 GAGCTCCCAAGAAAAAGGAAAATC 58.526 41.667 0.87 0.00 0.00 2.17
478 479 4.284490 GGAGCTCCCAAGAAAAAGGAAAAT 59.716 41.667 23.19 0.00 34.14 1.82
479 480 3.641436 GGAGCTCCCAAGAAAAAGGAAAA 59.359 43.478 23.19 0.00 34.14 2.29
480 481 3.117131 AGGAGCTCCCAAGAAAAAGGAAA 60.117 43.478 29.54 0.00 37.41 3.13
481 482 2.447047 AGGAGCTCCCAAGAAAAAGGAA 59.553 45.455 29.54 0.00 37.41 3.36
482 483 2.065799 AGGAGCTCCCAAGAAAAAGGA 58.934 47.619 29.54 0.00 37.41 3.36
483 484 2.593925 AGGAGCTCCCAAGAAAAAGG 57.406 50.000 29.54 0.00 37.41 3.11
484 485 5.105595 CCAAATAGGAGCTCCCAAGAAAAAG 60.106 44.000 29.54 10.18 41.22 2.27
485 486 4.772100 CCAAATAGGAGCTCCCAAGAAAAA 59.228 41.667 29.54 5.22 41.22 1.94
486 487 4.344104 CCAAATAGGAGCTCCCAAGAAAA 58.656 43.478 29.54 6.65 41.22 2.29
487 488 3.877735 GCCAAATAGGAGCTCCCAAGAAA 60.878 47.826 29.54 8.47 41.22 2.52
488 489 2.357154 GCCAAATAGGAGCTCCCAAGAA 60.357 50.000 29.54 10.32 41.22 2.52
490 491 1.685148 GCCAAATAGGAGCTCCCAAG 58.315 55.000 29.54 14.37 41.22 3.61
492 493 1.271840 ACGCCAAATAGGAGCTCCCA 61.272 55.000 29.54 17.52 41.55 4.37
493 494 0.815615 CACGCCAAATAGGAGCTCCC 60.816 60.000 29.54 10.94 41.55 4.30
494 495 0.107654 ACACGCCAAATAGGAGCTCC 60.108 55.000 26.22 26.22 41.55 4.70
495 496 1.666189 GAACACGCCAAATAGGAGCTC 59.334 52.381 4.71 4.71 41.55 4.09
496 497 1.003118 TGAACACGCCAAATAGGAGCT 59.997 47.619 0.00 0.00 41.55 4.09
497 498 1.448985 TGAACACGCCAAATAGGAGC 58.551 50.000 0.00 0.00 41.55 4.70
499 500 2.852449 TGTTGAACACGCCAAATAGGA 58.148 42.857 0.00 0.00 41.22 2.94
502 503 3.190327 CCTCATGTTGAACACGCCAAATA 59.810 43.478 0.00 0.00 0.00 1.40
503 504 2.030007 CCTCATGTTGAACACGCCAAAT 60.030 45.455 0.00 0.00 0.00 2.32
504 505 1.336440 CCTCATGTTGAACACGCCAAA 59.664 47.619 0.00 0.00 0.00 3.28
505 506 0.950836 CCTCATGTTGAACACGCCAA 59.049 50.000 0.00 0.00 0.00 4.52
507 508 1.234821 TTCCTCATGTTGAACACGCC 58.765 50.000 0.00 0.00 0.00 5.68
509 510 2.549754 AGCTTTCCTCATGTTGAACACG 59.450 45.455 0.00 0.00 0.00 4.49
510 511 4.540824 GAAGCTTTCCTCATGTTGAACAC 58.459 43.478 0.00 0.00 0.00 3.32
511 512 3.569701 GGAAGCTTTCCTCATGTTGAACA 59.430 43.478 0.00 0.00 46.57 3.18
512 513 4.166187 GGAAGCTTTCCTCATGTTGAAC 57.834 45.455 0.00 0.00 46.57 3.18
524 525 1.997928 GATGGCGCCAGGAAGCTTTC 61.998 60.000 35.36 20.51 0.00 2.62
525 526 2.036256 ATGGCGCCAGGAAGCTTT 59.964 55.556 35.36 12.75 0.00 3.51
526 527 2.439156 GATGGCGCCAGGAAGCTT 60.439 61.111 35.36 16.61 0.00 3.74
529 530 3.764160 GAGGGATGGCGCCAGGAAG 62.764 68.421 35.36 0.00 0.00 3.46
530 531 3.797353 GAGGGATGGCGCCAGGAA 61.797 66.667 35.36 11.67 0.00 3.36
532 533 3.882326 ATGAGGGATGGCGCCAGG 61.882 66.667 35.36 0.00 0.00 4.45
533 534 2.593725 CATGAGGGATGGCGCCAG 60.594 66.667 35.36 14.75 0.00 4.85
534 535 4.193893 CCATGAGGGATGGCGCCA 62.194 66.667 34.80 34.80 45.58 5.69
551 552 2.906897 CATGTACATGGGCCGGCC 60.907 66.667 38.57 38.57 35.24 6.13
558 559 4.158209 TCAACAATTGAGCCATGTACATGG 59.842 41.667 39.54 39.54 46.55 3.66
559 560 5.097529 GTCAACAATTGAGCCATGTACATG 58.902 41.667 26.02 26.02 41.01 3.21
560 561 5.012239 AGTCAACAATTGAGCCATGTACAT 58.988 37.500 13.59 1.41 41.01 2.29
561 562 4.397420 AGTCAACAATTGAGCCATGTACA 58.603 39.130 13.59 0.00 41.01 2.90
562 563 5.376854 AAGTCAACAATTGAGCCATGTAC 57.623 39.130 13.59 0.00 41.01 2.90
563 564 6.939730 TCTAAAGTCAACAATTGAGCCATGTA 59.060 34.615 13.59 0.00 41.01 2.29
565 566 6.149973 TCTCTAAAGTCAACAATTGAGCCATG 59.850 38.462 13.59 3.35 41.01 3.66
566 567 6.240894 TCTCTAAAGTCAACAATTGAGCCAT 58.759 36.000 13.59 0.00 41.01 4.40
567 568 5.620206 TCTCTAAAGTCAACAATTGAGCCA 58.380 37.500 13.59 0.00 41.01 4.75
568 569 5.934625 TCTCTCTAAAGTCAACAATTGAGCC 59.065 40.000 13.59 0.00 41.01 4.70
569 570 7.426929 TTCTCTCTAAAGTCAACAATTGAGC 57.573 36.000 13.59 0.00 41.01 4.26
618 619 7.841915 ACATTTTTGAATTCACGGTCTTTTT 57.158 28.000 7.89 0.00 0.00 1.94
619 620 7.547370 TGAACATTTTTGAATTCACGGTCTTTT 59.453 29.630 7.89 0.00 0.00 2.27
620 621 7.038659 TGAACATTTTTGAATTCACGGTCTTT 58.961 30.769 7.89 0.00 0.00 2.52
621 622 6.568869 TGAACATTTTTGAATTCACGGTCTT 58.431 32.000 7.89 0.00 0.00 3.01
622 623 6.142818 TGAACATTTTTGAATTCACGGTCT 57.857 33.333 7.89 0.00 0.00 3.85
623 624 8.020819 TCTATGAACATTTTTGAATTCACGGTC 58.979 33.333 7.89 3.65 34.08 4.79
697 698 9.672673 TGAGAATTTTCGAGAGGAGATAATTTT 57.327 29.630 0.00 0.00 32.31 1.82
699 700 9.844257 AATGAGAATTTTCGAGAGGAGATAATT 57.156 29.630 0.00 0.00 33.92 1.40
700 701 9.844257 AAATGAGAATTTTCGAGAGGAGATAAT 57.156 29.630 0.00 0.00 0.00 1.28
701 702 9.672673 AAAATGAGAATTTTCGAGAGGAGATAA 57.327 29.630 0.00 0.00 0.00 1.75
703 704 8.572855 AAAAATGAGAATTTTCGAGAGGAGAT 57.427 30.769 0.00 0.00 33.07 2.75
704 705 7.986085 AAAAATGAGAATTTTCGAGAGGAGA 57.014 32.000 0.00 0.00 33.07 3.71
735 736 1.480137 AGCACAGAGAATTCCCGAGAG 59.520 52.381 0.65 0.00 0.00 3.20
736 737 1.561643 AGCACAGAGAATTCCCGAGA 58.438 50.000 0.65 0.00 0.00 4.04
737 738 2.393271 AAGCACAGAGAATTCCCGAG 57.607 50.000 0.65 0.00 0.00 4.63
738 739 2.615493 GGAAAGCACAGAGAATTCCCGA 60.615 50.000 0.65 0.00 34.74 5.14
739 740 1.740025 GGAAAGCACAGAGAATTCCCG 59.260 52.381 0.65 0.00 34.74 5.14
741 742 2.795329 TGGGAAAGCACAGAGAATTCC 58.205 47.619 0.65 0.00 39.03 3.01
742 743 3.192212 CCTTGGGAAAGCACAGAGAATTC 59.808 47.826 0.00 0.00 0.00 2.17
744 745 2.376518 TCCTTGGGAAAGCACAGAGAAT 59.623 45.455 0.00 0.00 0.00 2.40
745 746 1.774254 TCCTTGGGAAAGCACAGAGAA 59.226 47.619 0.00 0.00 0.00 2.87
746 747 1.434188 TCCTTGGGAAAGCACAGAGA 58.566 50.000 0.00 0.00 0.00 3.10
747 748 2.157738 CTTCCTTGGGAAAGCACAGAG 58.842 52.381 0.59 0.00 41.54 3.35
748 749 1.202927 CCTTCCTTGGGAAAGCACAGA 60.203 52.381 0.59 0.00 41.54 3.41
749 750 1.202927 TCCTTCCTTGGGAAAGCACAG 60.203 52.381 0.59 0.00 41.54 3.66
750 751 0.850100 TCCTTCCTTGGGAAAGCACA 59.150 50.000 0.59 0.00 41.54 4.57
751 752 1.889170 CTTCCTTCCTTGGGAAAGCAC 59.111 52.381 0.59 0.00 41.54 4.40
752 753 1.823250 GCTTCCTTCCTTGGGAAAGCA 60.823 52.381 13.41 0.00 41.54 3.91
753 754 0.891373 GCTTCCTTCCTTGGGAAAGC 59.109 55.000 5.94 5.94 41.54 3.51
754 755 2.165998 CAGCTTCCTTCCTTGGGAAAG 58.834 52.381 0.59 0.00 41.54 2.62
756 757 0.405585 CCAGCTTCCTTCCTTGGGAA 59.594 55.000 0.00 0.00 39.66 3.97
758 759 0.034670 CTCCAGCTTCCTTCCTTGGG 60.035 60.000 0.00 0.00 0.00 4.12
759 760 0.679321 GCTCCAGCTTCCTTCCTTGG 60.679 60.000 0.00 0.00 38.21 3.61
760 761 0.679321 GGCTCCAGCTTCCTTCCTTG 60.679 60.000 0.00 0.00 41.70 3.61
762 763 2.304831 GGGCTCCAGCTTCCTTCCT 61.305 63.158 0.00 0.00 41.70 3.36
782 783 0.178992 GATGGATGAATGGGGCCGAA 60.179 55.000 0.00 0.00 0.00 4.30
787 788 1.888215 CTGACGATGGATGAATGGGG 58.112 55.000 0.00 0.00 0.00 4.96
798 799 2.110967 CCAAGCCTGGCTGACGATG 61.111 63.158 24.16 15.95 39.62 3.84
799 800 2.270205 CCAAGCCTGGCTGACGAT 59.730 61.111 24.16 2.29 39.62 3.73
833 843 1.137086 GAGGAGCGCTAGAAATGGACA 59.863 52.381 11.50 0.00 0.00 4.02
836 846 1.137872 AGTGAGGAGCGCTAGAAATGG 59.862 52.381 11.50 0.00 35.06 3.16
837 847 2.200067 CAGTGAGGAGCGCTAGAAATG 58.800 52.381 11.50 2.03 35.06 2.32
838 848 1.827969 ACAGTGAGGAGCGCTAGAAAT 59.172 47.619 11.50 0.00 35.06 2.17
840 850 0.811915 GACAGTGAGGAGCGCTAGAA 59.188 55.000 11.50 0.00 35.06 2.10
842 852 1.435515 GGACAGTGAGGAGCGCTAG 59.564 63.158 11.50 0.00 35.06 3.42
843 853 2.407428 CGGACAGTGAGGAGCGCTA 61.407 63.158 11.50 0.00 35.06 4.26
844 854 3.753434 CGGACAGTGAGGAGCGCT 61.753 66.667 11.27 11.27 38.01 5.92
848 858 2.997315 TGGGCGGACAGTGAGGAG 60.997 66.667 0.00 0.00 0.00 3.69
862 873 1.768077 GGGAGAGATGGGGAGTGGG 60.768 68.421 0.00 0.00 0.00 4.61
925 936 3.974293 GGCGGGAAGGGGGTTTGA 61.974 66.667 0.00 0.00 0.00 2.69
958 969 0.753867 TGACAAGTTCTGTGCCGGTA 59.246 50.000 1.90 0.00 38.84 4.02
959 970 0.532862 CTGACAAGTTCTGTGCCGGT 60.533 55.000 1.90 0.00 38.84 5.28
960 971 0.532862 ACTGACAAGTTCTGTGCCGG 60.533 55.000 0.00 0.00 38.84 6.13
962 973 1.230324 GGACTGACAAGTTCTGTGCC 58.770 55.000 0.00 0.00 38.84 5.01
964 975 2.918712 AGGGACTGACAAGTTCTGTG 57.081 50.000 0.00 0.00 38.84 3.66
966 977 3.429547 CGGATAGGGACTGACAAGTTCTG 60.430 52.174 0.00 0.00 41.52 3.02
1514 3715 3.566523 GTGGTGTAGAACTCAAGACTCG 58.433 50.000 0.00 0.00 0.00 4.18
1521 3722 1.116536 TGCCGGTGGTGTAGAACTCA 61.117 55.000 1.90 0.00 0.00 3.41
1691 3910 2.046892 GCTTGAGGCTTCGCAGGA 60.047 61.111 0.00 0.00 38.06 3.86
1821 4054 1.980772 GGTCTGCAGCTTTGGGCAT 60.981 57.895 9.47 0.00 44.79 4.40
1870 4113 4.309950 GGTTGTGCCCGAGTCGGT 62.310 66.667 28.98 0.00 46.80 4.69
1872 4115 2.030562 AAGGTTGTGCCCGAGTCG 59.969 61.111 5.29 5.29 38.26 4.18
2110 4392 1.591327 GCTCTAGCTTCAGCCGCTC 60.591 63.158 5.46 0.00 43.38 5.03
2649 6068 3.063180 CGCACAAAATTCAGCCAAAAACA 59.937 39.130 0.00 0.00 0.00 2.83
2667 6086 1.071605 CAGAAGCCTGTAAGACGCAC 58.928 55.000 0.00 0.00 34.07 5.34
2669 6088 0.037232 ACCAGAAGCCTGTAAGACGC 60.037 55.000 0.00 0.00 38.74 5.19
2670 6089 1.000955 ACACCAGAAGCCTGTAAGACG 59.999 52.381 0.00 0.00 38.74 4.18
2688 6108 6.239036 CGAGAGATCACATATGGTAAGGAACA 60.239 42.308 7.80 0.00 0.00 3.18
2703 6124 1.475403 TCAAGTCCCCGAGAGATCAC 58.525 55.000 0.00 0.00 0.00 3.06
2712 6133 1.671054 ACAACGCATCAAGTCCCCG 60.671 57.895 0.00 0.00 0.00 5.73
2714 6135 0.238289 CACACAACGCATCAAGTCCC 59.762 55.000 0.00 0.00 0.00 4.46
2726 6147 7.882179 AGTTTATTGAAGAATACCCACACAAC 58.118 34.615 0.00 0.00 0.00 3.32
2761 6182 5.292101 GGACATGGAGAACTTAAGTGAATCG 59.708 44.000 9.34 0.00 0.00 3.34
2766 6187 4.003648 GGTGGACATGGAGAACTTAAGTG 58.996 47.826 9.34 0.00 0.00 3.16
2767 6188 3.306780 CGGTGGACATGGAGAACTTAAGT 60.307 47.826 1.12 1.12 0.00 2.24
2768 6189 3.262420 CGGTGGACATGGAGAACTTAAG 58.738 50.000 0.00 0.00 0.00 1.85
2788 6209 2.097466 GTGGACATGAAAACCATAGGCG 59.903 50.000 0.00 0.00 36.09 5.52
2794 6215 0.179004 AGCGGTGGACATGAAAACCA 60.179 50.000 0.00 0.47 32.69 3.67
2796 6217 0.165944 CGAGCGGTGGACATGAAAAC 59.834 55.000 0.00 0.00 0.00 2.43
2800 6221 4.451150 GCCGAGCGGTGGACATGA 62.451 66.667 10.94 0.00 37.65 3.07
2809 6230 0.454600 TTGTTACTAGAGCCGAGCGG 59.545 55.000 4.20 4.20 38.57 5.52
2812 6233 7.168302 CACATCTTATTTGTTACTAGAGCCGAG 59.832 40.741 0.00 0.00 0.00 4.63
2813 6234 6.978659 CACATCTTATTTGTTACTAGAGCCGA 59.021 38.462 0.00 0.00 0.00 5.54
2814 6235 6.201044 CCACATCTTATTTGTTACTAGAGCCG 59.799 42.308 0.00 0.00 0.00 5.52
2815 6236 6.017852 GCCACATCTTATTTGTTACTAGAGCC 60.018 42.308 0.00 0.00 0.00 4.70
2823 6244 7.147549 ACCTAGCTAGCCACATCTTATTTGTTA 60.148 37.037 15.74 0.00 0.00 2.41
2869 6290 8.330247 TGGTCTAAGAGTTAGATGAGACTTAGT 58.670 37.037 0.00 0.00 43.59 2.24
2871 6292 9.702253 AATGGTCTAAGAGTTAGATGAGACTTA 57.298 33.333 0.00 0.00 43.59 2.24
2872 6293 8.602472 AATGGTCTAAGAGTTAGATGAGACTT 57.398 34.615 0.00 0.00 43.59 3.01
2873 6294 8.602472 AAATGGTCTAAGAGTTAGATGAGACT 57.398 34.615 0.00 0.00 43.59 3.24
2876 6297 9.535878 GGTAAAATGGTCTAAGAGTTAGATGAG 57.464 37.037 0.00 0.00 43.59 2.90
2917 6338 4.731929 TGGAGGAGGAGCCCTAATATTTTT 59.268 41.667 0.00 0.00 36.49 1.94
2918 6339 4.104897 GTGGAGGAGGAGCCCTAATATTTT 59.895 45.833 0.00 0.00 36.49 1.82
2919 6340 3.653352 GTGGAGGAGGAGCCCTAATATTT 59.347 47.826 0.00 0.00 36.49 1.40
2920 6341 3.252351 GTGGAGGAGGAGCCCTAATATT 58.748 50.000 0.00 0.00 36.49 1.28
2921 6342 2.495572 GGTGGAGGAGGAGCCCTAATAT 60.496 54.545 0.00 0.00 36.49 1.28
2922 6343 1.132817 GGTGGAGGAGGAGCCCTAATA 60.133 57.143 0.00 0.00 36.49 0.98
2923 6344 0.400670 GGTGGAGGAGGAGCCCTAAT 60.401 60.000 0.00 0.00 36.49 1.73
2924 6345 1.003051 GGTGGAGGAGGAGCCCTAA 59.997 63.158 0.00 0.00 36.49 2.69
3116 6539 1.153997 GCCGTCTCGTCTTCCTGAC 60.154 63.158 0.00 0.00 42.06 3.51
3260 6683 2.701073 AGACGAACAACGACGAGATT 57.299 45.000 0.00 0.00 45.77 2.40
3308 6731 4.384846 CGATGGAAAATAACGTAGATCGGG 59.615 45.833 0.00 0.00 44.69 5.14
3583 7006 8.889717 TCCGCTTAAAATAAAATGGTCTAAGAG 58.110 33.333 0.00 0.00 0.00 2.85
3584 7007 8.795842 TCCGCTTAAAATAAAATGGTCTAAGA 57.204 30.769 0.00 0.00 0.00 2.10
3588 7011 7.013369 GGATCTCCGCTTAAAATAAAATGGTCT 59.987 37.037 0.00 0.00 0.00 3.85
3589 7012 7.139392 GGATCTCCGCTTAAAATAAAATGGTC 58.861 38.462 0.00 0.00 0.00 4.02
3590 7013 7.039313 GGATCTCCGCTTAAAATAAAATGGT 57.961 36.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.