Multiple sequence alignment - TraesCS3B01G504300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G504300 chr3B 100.000 4955 0 0 1 4955 748780493 748775539 0.000000e+00 9151.0
1 TraesCS3B01G504300 chr3B 78.039 1448 251 49 994 2403 749725768 749727186 0.000000e+00 850.0
2 TraesCS3B01G504300 chr3B 78.712 1273 226 31 1025 2280 749979377 749980621 0.000000e+00 808.0
3 TraesCS3B01G504300 chr3B 77.221 1418 251 42 1025 2403 749859955 749861339 0.000000e+00 763.0
4 TraesCS3B01G504300 chr3B 76.959 1276 233 39 1034 2268 749025772 749024517 0.000000e+00 671.0
5 TraesCS3B01G504300 chr3B 88.424 311 26 6 4115 4425 748626195 748625895 2.820000e-97 366.0
6 TraesCS3B01G504300 chr3B 97.436 117 3 0 3503 3619 513904079 513904195 3.020000e-47 200.0
7 TraesCS3B01G504300 chr3B 95.868 121 5 0 3500 3620 92927745 92927865 3.910000e-46 196.0
8 TraesCS3B01G504300 chr3A 92.771 2642 152 15 1 2633 697392443 697389832 0.000000e+00 3784.0
9 TraesCS3B01G504300 chr3A 94.235 850 40 4 3616 4461 697388819 697387975 0.000000e+00 1290.0
10 TraesCS3B01G504300 chr3A 95.353 581 19 1 2740 3320 697389489 697388917 0.000000e+00 917.0
11 TraesCS3B01G504300 chr3A 77.911 1417 233 47 995 2364 697673471 697674854 0.000000e+00 809.0
12 TraesCS3B01G504300 chr3A 77.254 1486 252 49 968 2403 697438062 697436613 0.000000e+00 793.0
13 TraesCS3B01G504300 chr3A 77.795 1279 234 36 1023 2280 697679961 697681210 0.000000e+00 743.0
14 TraesCS3B01G504300 chr3A 77.011 1305 224 48 994 2249 697457467 697456190 0.000000e+00 678.0
15 TraesCS3B01G504300 chr3A 76.135 1035 194 36 1187 2190 697617717 697618729 1.240000e-135 494.0
16 TraesCS3B01G504300 chr3A 94.595 111 5 1 2632 2742 697389750 697389641 2.370000e-38 171.0
17 TraesCS3B01G504300 chr3A 95.283 106 5 0 3400 3505 697388920 697388815 8.530000e-38 169.0
18 TraesCS3B01G504300 chr3A 94.059 101 4 2 3319 3417 726444479 726444579 8.590000e-33 152.0
19 TraesCS3B01G504300 chr3D 88.734 2796 207 44 6 2742 561457394 561454648 0.000000e+00 3319.0
20 TraesCS3B01G504300 chr3D 90.977 942 47 12 3616 4526 561453835 561452901 0.000000e+00 1234.0
21 TraesCS3B01G504300 chr3D 83.769 918 140 8 1022 1931 562348111 562349027 0.000000e+00 861.0
22 TraesCS3B01G504300 chr3D 79.048 1303 230 32 993 2280 562545149 562546423 0.000000e+00 854.0
23 TraesCS3B01G504300 chr3D 77.710 1476 264 46 972 2403 561462607 561461153 0.000000e+00 843.0
24 TraesCS3B01G504300 chr3D 93.115 581 19 4 2740 3320 561454492 561453933 0.000000e+00 832.0
25 TraesCS3B01G504300 chr3D 77.671 1460 255 44 985 2403 562504173 562505602 0.000000e+00 824.0
26 TraesCS3B01G504300 chr3D 77.625 1457 242 52 994 2401 562538243 562539664 0.000000e+00 808.0
27 TraesCS3B01G504300 chr3D 79.757 1151 179 37 993 2104 562459558 562460693 0.000000e+00 785.0
28 TraesCS3B01G504300 chr3D 76.497 1319 242 44 994 2268 561711664 561710370 0.000000e+00 656.0
29 TraesCS3B01G504300 chr3D 79.978 894 141 19 994 1876 562433181 562434047 4.210000e-175 625.0
30 TraesCS3B01G504300 chr3D 74.118 510 101 26 184 679 96121300 96121792 1.100000e-41 182.0
31 TraesCS3B01G504300 chr3D 97.170 106 3 0 3400 3505 561453936 561453831 3.940000e-41 180.0
32 TraesCS3B01G504300 chr1B 97.436 117 3 0 3503 3619 106654507 106654623 3.020000e-47 200.0
33 TraesCS3B01G504300 chr1B 97.802 91 2 0 3319 3409 28500504 28500414 1.850000e-34 158.0
34 TraesCS3B01G504300 chr5B 96.581 117 4 0 3503 3619 644257470 644257354 1.410000e-45 195.0
35 TraesCS3B01G504300 chr5B 93.600 125 8 0 3496 3620 70795778 70795654 2.360000e-43 187.0
36 TraesCS3B01G504300 chr5B 96.809 94 3 0 3316 3409 377701221 377701128 1.850000e-34 158.0
37 TraesCS3B01G504300 chr5B 94.898 98 5 0 3306 3403 323861074 323861171 2.390000e-33 154.0
38 TraesCS3B01G504300 chr5B 94.845 97 4 1 3309 3404 603648282 603648378 3.090000e-32 150.0
39 TraesCS3B01G504300 chr5B 89.565 115 8 4 3298 3410 621211700 621211812 5.170000e-30 143.0
40 TraesCS3B01G504300 chr2B 93.651 126 7 1 3498 3622 497854279 497854154 2.360000e-43 187.0
41 TraesCS3B01G504300 chr2B 95.876 97 4 0 3309 3405 546125882 546125978 1.850000e-34 158.0
42 TraesCS3B01G504300 chr2B 85.882 85 11 1 3412 3496 476720362 476720445 6.830000e-14 89.8
43 TraesCS3B01G504300 chr7D 92.308 130 9 1 3500 3629 600970967 600971095 3.050000e-42 183.0
44 TraesCS3B01G504300 chr7D 87.013 77 6 3 2959 3033 4999688 4999762 3.180000e-12 84.2
45 TraesCS3B01G504300 chr7B 92.308 130 8 2 3495 3623 109935612 109935740 3.050000e-42 183.0
46 TraesCS3B01G504300 chr7B 96.907 97 2 1 3308 3403 726226966 726227062 1.430000e-35 161.0
47 TraesCS3B01G504300 chr6B 90.141 142 12 2 3494 3633 267021899 267021758 3.050000e-42 183.0
48 TraesCS3B01G504300 chr6B 90.826 109 8 2 3304 3412 135936403 135936297 1.440000e-30 145.0
49 TraesCS3B01G504300 chr4B 95.789 95 4 0 3315 3409 552019829 552019735 2.390000e-33 154.0
50 TraesCS3B01G504300 chr4B 91.743 109 7 2 3297 3403 2432003 2431895 3.090000e-32 150.0
51 TraesCS3B01G504300 chr4B 91.743 109 6 3 3295 3403 429605976 429605871 1.110000e-31 148.0
52 TraesCS3B01G504300 chrUn 93.204 103 6 1 3305 3406 55723711 55723609 3.090000e-32 150.0
53 TraesCS3B01G504300 chr5A 90.435 115 10 1 3292 3405 472698389 472698275 3.090000e-32 150.0
54 TraesCS3B01G504300 chr5A 96.970 33 1 0 239 271 592424051 592424083 6.930000e-04 56.5
55 TraesCS3B01G504300 chr4D 94.792 96 5 0 3311 3406 22573312 22573407 3.090000e-32 150.0
56 TraesCS3B01G504300 chr5D 86.047 129 15 3 3276 3404 332913025 332913150 8.650000e-28 135.0
57 TraesCS3B01G504300 chr2D 86.047 86 9 3 3412 3496 402939933 402940016 6.830000e-14 89.8
58 TraesCS3B01G504300 chr2A 83.721 86 11 3 3412 3496 540050089 540050172 1.480000e-10 78.7
59 TraesCS3B01G504300 chr6D 76.562 128 27 2 1063 1187 466999124 466999251 3.200000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G504300 chr3B 748775539 748780493 4954 True 9151.0 9151 100.0000 1 4955 1 chr3B.!!$R2 4954
1 TraesCS3B01G504300 chr3B 749725768 749727186 1418 False 850.0 850 78.0390 994 2403 1 chr3B.!!$F3 1409
2 TraesCS3B01G504300 chr3B 749979377 749980621 1244 False 808.0 808 78.7120 1025 2280 1 chr3B.!!$F5 1255
3 TraesCS3B01G504300 chr3B 749859955 749861339 1384 False 763.0 763 77.2210 1025 2403 1 chr3B.!!$F4 1378
4 TraesCS3B01G504300 chr3B 749024517 749025772 1255 True 671.0 671 76.9590 1034 2268 1 chr3B.!!$R3 1234
5 TraesCS3B01G504300 chr3A 697387975 697392443 4468 True 1266.2 3784 94.4474 1 4461 5 chr3A.!!$R3 4460
6 TraesCS3B01G504300 chr3A 697673471 697674854 1383 False 809.0 809 77.9110 995 2364 1 chr3A.!!$F2 1369
7 TraesCS3B01G504300 chr3A 697436613 697438062 1449 True 793.0 793 77.2540 968 2403 1 chr3A.!!$R1 1435
8 TraesCS3B01G504300 chr3A 697679961 697681210 1249 False 743.0 743 77.7950 1023 2280 1 chr3A.!!$F3 1257
9 TraesCS3B01G504300 chr3A 697456190 697457467 1277 True 678.0 678 77.0110 994 2249 1 chr3A.!!$R2 1255
10 TraesCS3B01G504300 chr3A 697617717 697618729 1012 False 494.0 494 76.1350 1187 2190 1 chr3A.!!$F1 1003
11 TraesCS3B01G504300 chr3D 561452901 561462607 9706 True 1281.6 3319 89.5412 6 4526 5 chr3D.!!$R2 4520
12 TraesCS3B01G504300 chr3D 562348111 562349027 916 False 861.0 861 83.7690 1022 1931 1 chr3D.!!$F2 909
13 TraesCS3B01G504300 chr3D 562545149 562546423 1274 False 854.0 854 79.0480 993 2280 1 chr3D.!!$F7 1287
14 TraesCS3B01G504300 chr3D 562504173 562505602 1429 False 824.0 824 77.6710 985 2403 1 chr3D.!!$F5 1418
15 TraesCS3B01G504300 chr3D 562538243 562539664 1421 False 808.0 808 77.6250 994 2401 1 chr3D.!!$F6 1407
16 TraesCS3B01G504300 chr3D 562459558 562460693 1135 False 785.0 785 79.7570 993 2104 1 chr3D.!!$F4 1111
17 TraesCS3B01G504300 chr3D 561710370 561711664 1294 True 656.0 656 76.4970 994 2268 1 chr3D.!!$R1 1274
18 TraesCS3B01G504300 chr3D 562433181 562434047 866 False 625.0 625 79.9780 994 1876 1 chr3D.!!$F3 882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 982 0.105039 AGATCTGCGACGAAATCCCC 59.895 55.0 0.0 0.0 0.0 4.81 F
991 998 0.107165 CCCCCTCCGTCTGAAAATCC 60.107 60.0 0.0 0.0 0.0 3.01 F
1877 2033 0.322648 CTCAGTGTGTGGCTCCATCA 59.677 55.0 0.0 0.0 0.0 3.07 F
3521 10127 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.0 0.0 0.0 0.0 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 2033 0.615331 ATGGTTGTCGCCTGTCATCT 59.385 50.0 0.00 0.0 0.00 2.90 R
2855 9461 0.747255 TTCGCAGCAGGGAGATCTAC 59.253 55.0 0.00 0.0 38.03 2.59 R
3594 10200 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.0 5.23 3.9 44.66 4.18 R
4933 11569 0.178068 TCAGCCCATAAACCTCTCGC 59.822 55.0 0.00 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.225860 TGGTGGTCCAGGTGGTAG 57.774 61.111 0.00 0.00 39.03 3.18
63 64 2.103042 GGTAGCGCCAACAGCTCAG 61.103 63.158 2.29 0.00 44.79 3.35
90 91 1.002251 GGTGTTTGCCATTTTCGACGA 60.002 47.619 0.00 0.00 0.00 4.20
134 135 1.537202 GTGACTTCATTGGTGAGGTGC 59.463 52.381 0.00 0.00 43.80 5.01
139 140 1.968017 CATTGGTGAGGTGCTGCGT 60.968 57.895 0.00 0.00 0.00 5.24
143 144 4.030452 GTGAGGTGCTGCGTTGGC 62.030 66.667 0.00 0.00 40.52 4.52
169 170 1.594194 GCGAACCAACATGGATGGCA 61.594 55.000 17.12 0.00 42.14 4.92
174 175 0.387929 CCAACATGGATGGCATGCTC 59.612 55.000 19.96 8.11 40.96 4.26
179 180 1.199327 CATGGATGGCATGCTCGATTC 59.801 52.381 19.96 6.92 0.00 2.52
180 181 0.535780 TGGATGGCATGCTCGATTCC 60.536 55.000 19.96 15.84 0.00 3.01
181 182 0.250640 GGATGGCATGCTCGATTCCT 60.251 55.000 18.92 0.00 0.00 3.36
182 183 1.002430 GGATGGCATGCTCGATTCCTA 59.998 52.381 18.92 0.00 0.00 2.94
188 189 0.394565 ATGCTCGATTCCTAGTGGGC 59.605 55.000 0.00 0.00 34.39 5.36
193 194 1.839894 GATTCCTAGTGGGCAGGGG 59.160 63.158 0.00 0.00 33.66 4.79
220 221 4.782156 TGTGTACGACGATTTAGACGAAA 58.218 39.130 0.00 0.00 33.85 3.46
264 265 1.201954 CCAACGATGACGATGCTTGTG 60.202 52.381 0.00 0.00 40.14 3.33
280 281 2.121832 TGGGTGTCGTCCCCTCAT 59.878 61.111 9.69 0.00 46.48 2.90
283 284 2.202756 GTGTCGTCCCCTCATCGC 60.203 66.667 0.00 0.00 0.00 4.58
287 288 4.899239 CGTCCCCTCATCGCAGGC 62.899 72.222 0.00 0.00 31.23 4.85
304 305 2.094659 GCTCCGATGTGGTGTGTCG 61.095 63.158 0.00 0.00 39.52 4.35
307 308 2.654289 CGATGTGGTGTGTCGGGA 59.346 61.111 0.00 0.00 0.00 5.14
308 309 1.736645 CGATGTGGTGTGTCGGGAC 60.737 63.158 0.00 0.00 0.00 4.46
309 310 1.375523 GATGTGGTGTGTCGGGACC 60.376 63.158 0.00 0.00 0.00 4.46
310 311 1.827399 GATGTGGTGTGTCGGGACCT 61.827 60.000 0.00 0.00 32.98 3.85
311 312 1.827399 ATGTGGTGTGTCGGGACCTC 61.827 60.000 0.00 0.00 32.98 3.85
312 313 2.123208 TGGTGTGTCGGGACCTCA 60.123 61.111 0.00 0.00 32.98 3.86
313 314 2.342648 GGTGTGTCGGGACCTCAC 59.657 66.667 12.53 12.53 35.78 3.51
360 361 1.810030 CCGCGTGAAAGCCTAGGTC 60.810 63.158 11.31 2.66 0.00 3.85
361 362 1.810030 CGCGTGAAAGCCTAGGTCC 60.810 63.158 11.31 0.00 0.00 4.46
372 373 3.185455 AGCCTAGGTCCAGTTTCAGATT 58.815 45.455 11.31 0.00 0.00 2.40
403 404 0.170561 CGTCCTCGATGTCGTTCCTT 59.829 55.000 2.04 0.00 40.80 3.36
405 406 0.450583 TCCTCGATGTCGTTCCTTCG 59.549 55.000 2.04 0.00 40.80 3.79
412 413 0.464870 TGTCGTTCCTTCGTTGGGAA 59.535 50.000 0.00 0.00 40.14 3.97
421 422 5.637006 TCCTTCGTTGGGAACATTATTTG 57.363 39.130 0.00 0.00 42.32 2.32
464 465 4.661222 TCTATGTTGCATTCCTTTGGTGA 58.339 39.130 0.00 0.00 0.00 4.02
473 474 0.759959 TCCTTTGGTGACTGCCGTTA 59.240 50.000 0.00 0.00 0.00 3.18
501 502 0.835971 TGCTTGTGAGGGGTGCTAGA 60.836 55.000 0.00 0.00 0.00 2.43
555 556 2.791347 TCTCGGAGCTGTCTTAGTCT 57.209 50.000 0.00 0.00 0.00 3.24
582 583 2.423577 CCACCCGTCAACTCTTTTAGG 58.576 52.381 0.00 0.00 0.00 2.69
589 590 4.215399 CCGTCAACTCTTTTAGGCAATCAA 59.785 41.667 0.00 0.00 0.00 2.57
605 606 0.396435 TCAAGGTGGTTGATGCGTCT 59.604 50.000 7.58 0.00 40.45 4.18
630 631 6.367969 TGAAAGGATAGTTCGTTTAGAGTTGC 59.632 38.462 0.00 0.00 39.40 4.17
632 633 6.770746 AGGATAGTTCGTTTAGAGTTGCTA 57.229 37.500 0.00 0.00 0.00 3.49
664 666 1.006102 AGCGGAGTTGGTTGAGACG 60.006 57.895 0.00 0.00 0.00 4.18
666 668 2.372690 CGGAGTTGGTTGAGACGCG 61.373 63.158 3.53 3.53 0.00 6.01
668 670 1.282930 GGAGTTGGTTGAGACGCGTC 61.283 60.000 31.30 31.30 0.00 5.19
681 683 0.179094 ACGCGTCTTTGTTGGTCTGA 60.179 50.000 5.58 0.00 0.00 3.27
691 693 2.794103 TGTTGGTCTGATTGGGACATG 58.206 47.619 0.00 0.00 39.30 3.21
701 703 0.527113 TTGGGACATGCTTTGATGCG 59.473 50.000 0.00 0.00 39.30 4.73
704 706 1.742831 GGGACATGCTTTGATGCGTTA 59.257 47.619 0.00 0.00 35.36 3.18
716 718 6.801862 GCTTTGATGCGTTAGAGTTGTATTTT 59.198 34.615 0.00 0.00 0.00 1.82
726 728 7.097047 CGTTAGAGTTGTATTTTTGTGTGCTTG 60.097 37.037 0.00 0.00 0.00 4.01
787 789 0.255890 TGCCTGAACCCTATGCCTTC 59.744 55.000 0.00 0.00 0.00 3.46
791 793 2.755103 CCTGAACCCTATGCCTTCAAAC 59.245 50.000 0.00 0.00 0.00 2.93
793 795 3.420893 TGAACCCTATGCCTTCAAACAG 58.579 45.455 0.00 0.00 0.00 3.16
794 796 3.073798 TGAACCCTATGCCTTCAAACAGA 59.926 43.478 0.00 0.00 0.00 3.41
798 800 5.086621 ACCCTATGCCTTCAAACAGAAAAT 58.913 37.500 0.00 0.00 35.40 1.82
799 801 5.543790 ACCCTATGCCTTCAAACAGAAAATT 59.456 36.000 0.00 0.00 35.40 1.82
801 803 7.035612 CCCTATGCCTTCAAACAGAAAATTAC 58.964 38.462 0.00 0.00 35.40 1.89
802 804 6.747280 CCTATGCCTTCAAACAGAAAATTACG 59.253 38.462 0.00 0.00 35.40 3.18
803 805 4.865776 TGCCTTCAAACAGAAAATTACGG 58.134 39.130 0.00 0.00 35.40 4.02
809 815 5.945155 TCAAACAGAAAATTACGGTATGCC 58.055 37.500 0.00 0.00 0.00 4.40
812 818 5.751243 ACAGAAAATTACGGTATGCCATC 57.249 39.130 0.00 0.00 34.09 3.51
816 822 1.795768 ATTACGGTATGCCATCTGCG 58.204 50.000 0.00 0.00 45.60 5.18
884 890 2.105993 TCTGCCATCAGATCTGGATTGG 59.894 50.000 22.42 23.66 43.95 3.16
896 902 0.107703 TGGATTGGACGGCAGATGTC 60.108 55.000 0.00 0.00 35.60 3.06
952 959 0.601311 GGCGACTCTGCAAAGTCACT 60.601 55.000 19.80 0.00 44.88 3.41
953 960 1.336887 GGCGACTCTGCAAAGTCACTA 60.337 52.381 19.80 0.00 44.88 2.74
954 961 1.989165 GCGACTCTGCAAAGTCACTAG 59.011 52.381 19.80 4.85 44.88 2.57
955 962 2.608261 GCGACTCTGCAAAGTCACTAGT 60.608 50.000 19.80 0.00 44.88 2.57
975 982 0.105039 AGATCTGCGACGAAATCCCC 59.895 55.000 0.00 0.00 0.00 4.81
985 992 1.327690 CGAAATCCCCCTCCGTCTGA 61.328 60.000 0.00 0.00 0.00 3.27
989 996 1.596496 ATCCCCCTCCGTCTGAAAAT 58.404 50.000 0.00 0.00 0.00 1.82
990 997 0.909623 TCCCCCTCCGTCTGAAAATC 59.090 55.000 0.00 0.00 0.00 2.17
991 998 0.107165 CCCCCTCCGTCTGAAAATCC 60.107 60.000 0.00 0.00 0.00 3.01
1326 1370 4.770874 GCCTACGCCTTTGCCCGA 62.771 66.667 0.00 0.00 0.00 5.14
1404 1499 1.813513 AGGGAACATTCAAGCACTCG 58.186 50.000 0.00 0.00 0.00 4.18
1603 1732 1.215647 GAGGTGTACGTGCTGGGAG 59.784 63.158 4.97 0.00 0.00 4.30
1656 1806 2.495669 GGCAGAGATAGAGCTCCCATAC 59.504 54.545 10.93 0.00 35.49 2.39
1689 1839 3.640967 TCTTTGCAAAAATGCTACCACCT 59.359 39.130 13.84 0.00 35.49 4.00
1845 2001 2.546795 CGGGATCTATCTTGTCACTGCC 60.547 54.545 0.00 0.00 0.00 4.85
1877 2033 0.322648 CTCAGTGTGTGGCTCCATCA 59.677 55.000 0.00 0.00 0.00 3.07
1932 2091 2.548057 GCTCTTGATGGACACGTTTTCA 59.452 45.455 0.00 0.00 0.00 2.69
2060 2237 4.394920 TCCATCAAGCGGTGTTATCTTTTC 59.605 41.667 0.00 0.00 0.00 2.29
2072 2249 7.095229 CGGTGTTATCTTTTCTGTTCATCTCAA 60.095 37.037 0.00 0.00 0.00 3.02
2186 8541 1.741770 CGCCTATATTCCCAGCGCC 60.742 63.158 2.29 0.00 40.35 6.53
2225 8580 1.701847 AGAGGTATGATCCCCATGTGC 59.298 52.381 0.00 0.00 36.71 4.57
2331 8687 2.684374 TGGATGTTGCAGTCATGTATGC 59.316 45.455 15.16 15.16 42.86 3.14
2336 8692 2.028420 TGCAGTCATGTATGCTGGAC 57.972 50.000 20.27 0.00 42.98 4.02
2352 8709 6.121776 TGCTGGACATTAAGAACCTCTTTA 57.878 37.500 0.00 0.00 37.89 1.85
2493 8854 9.017669 CAAGATATTGAGCTTAGCAATTCAAAC 57.982 33.333 7.07 4.81 37.22 2.93
2494 8855 8.284945 AGATATTGAGCTTAGCAATTCAAACA 57.715 30.769 7.07 1.52 37.22 2.83
2519 8880 1.280746 CTTTGGTGTGCTGCAGTCG 59.719 57.895 16.64 0.00 0.00 4.18
2537 8898 8.766000 TGCAGTCGTGTAAATTAGATCTTAAA 57.234 30.769 0.00 0.00 0.00 1.52
2673 9121 7.461749 TCCTCAATAACAATGTTCTCCTTCTT 58.538 34.615 0.22 0.00 0.00 2.52
2674 9122 7.391554 TCCTCAATAACAATGTTCTCCTTCTTG 59.608 37.037 0.22 0.00 0.00 3.02
2850 9456 6.415573 AGTGGAAATTCCTACTGATTGGTAC 58.584 40.000 13.78 0.00 37.46 3.34
2851 9457 6.215636 AGTGGAAATTCCTACTGATTGGTACT 59.784 38.462 13.78 0.75 37.46 2.73
2852 9458 6.884836 GTGGAAATTCCTACTGATTGGTACTT 59.115 38.462 13.78 0.00 37.46 2.24
2853 9459 7.393515 GTGGAAATTCCTACTGATTGGTACTTT 59.606 37.037 13.78 0.00 37.46 2.66
2854 9460 7.393234 TGGAAATTCCTACTGATTGGTACTTTG 59.607 37.037 13.78 0.00 37.46 2.77
2855 9461 7.148069 GGAAATTCCTACTGATTGGTACTTTGG 60.148 40.741 4.46 0.00 32.53 3.28
2856 9462 5.836024 TTCCTACTGATTGGTACTTTGGT 57.164 39.130 0.00 0.00 0.00 3.67
2857 9463 6.938698 TTCCTACTGATTGGTACTTTGGTA 57.061 37.500 0.00 0.00 0.00 3.25
2905 9511 6.032094 CAGAGCTTTGTATGGTTAAGCAATG 58.968 40.000 12.00 0.00 45.08 2.82
2913 9519 6.668645 TGTATGGTTAAGCAATGGATAACCT 58.331 36.000 12.00 0.00 45.66 3.50
2943 9549 3.704566 GTCCAATTCCATAAAAGGGGGAC 59.295 47.826 0.00 0.00 35.96 4.46
3068 9674 7.880195 AGCATTATAAGAAGTGGTCATGTATCC 59.120 37.037 0.00 0.00 0.00 2.59
3240 9846 6.261118 CCTTCTGCATGCTTTTATAAGTGAC 58.739 40.000 20.33 0.00 33.74 3.67
3324 9930 9.832445 TTTCATGATATGTTAAGAAGTACTCCC 57.168 33.333 0.00 0.00 0.00 4.30
3325 9931 8.783660 TCATGATATGTTAAGAAGTACTCCCT 57.216 34.615 0.00 0.00 0.00 4.20
3326 9932 8.861086 TCATGATATGTTAAGAAGTACTCCCTC 58.139 37.037 0.00 0.00 0.00 4.30
3327 9933 8.865090 CATGATATGTTAAGAAGTACTCCCTCT 58.135 37.037 0.00 0.00 0.00 3.69
3328 9934 8.239038 TGATATGTTAAGAAGTACTCCCTCTG 57.761 38.462 0.00 0.00 0.00 3.35
3329 9935 7.839705 TGATATGTTAAGAAGTACTCCCTCTGT 59.160 37.037 0.00 0.00 0.00 3.41
3330 9936 9.352191 GATATGTTAAGAAGTACTCCCTCTGTA 57.648 37.037 0.00 0.00 0.00 2.74
3331 9937 9.710818 ATATGTTAAGAAGTACTCCCTCTGTAA 57.289 33.333 0.00 0.00 0.00 2.41
3332 9938 7.844493 TGTTAAGAAGTACTCCCTCTGTAAA 57.156 36.000 0.00 0.00 0.00 2.01
3333 9939 7.664758 TGTTAAGAAGTACTCCCTCTGTAAAC 58.335 38.462 0.00 3.19 0.00 2.01
3334 9940 7.508296 TGTTAAGAAGTACTCCCTCTGTAAACT 59.492 37.037 0.00 0.00 0.00 2.66
3335 9941 9.018582 GTTAAGAAGTACTCCCTCTGTAAACTA 57.981 37.037 0.00 0.00 0.00 2.24
3336 9942 9.592196 TTAAGAAGTACTCCCTCTGTAAACTAA 57.408 33.333 0.00 0.00 0.00 2.24
3337 9943 8.667592 AAGAAGTACTCCCTCTGTAAACTAAT 57.332 34.615 0.00 0.00 0.00 1.73
3338 9944 9.765295 AAGAAGTACTCCCTCTGTAAACTAATA 57.235 33.333 0.00 0.00 0.00 0.98
3339 9945 9.939424 AGAAGTACTCCCTCTGTAAACTAATAT 57.061 33.333 0.00 0.00 0.00 1.28
3345 9951 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
3347 9953 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
3499 10105 5.852282 ACATTTGGCAAGTTCAGTAGTTT 57.148 34.783 0.00 0.00 0.00 2.66
3500 10106 6.952773 ACATTTGGCAAGTTCAGTAGTTTA 57.047 33.333 0.00 0.00 0.00 2.01
3501 10107 6.970484 ACATTTGGCAAGTTCAGTAGTTTAG 58.030 36.000 0.00 0.00 0.00 1.85
3502 10108 6.546034 ACATTTGGCAAGTTCAGTAGTTTAGT 59.454 34.615 0.00 0.00 0.00 2.24
3503 10109 7.717875 ACATTTGGCAAGTTCAGTAGTTTAGTA 59.282 33.333 0.00 0.00 0.00 1.82
3504 10110 7.486802 TTTGGCAAGTTCAGTAGTTTAGTAC 57.513 36.000 0.00 0.00 0.00 2.73
3505 10111 6.415206 TGGCAAGTTCAGTAGTTTAGTACT 57.585 37.500 0.00 0.00 41.04 2.73
3506 10112 6.453092 TGGCAAGTTCAGTAGTTTAGTACTC 58.547 40.000 0.00 0.00 38.33 2.59
3507 10113 5.868258 GGCAAGTTCAGTAGTTTAGTACTCC 59.132 44.000 0.00 0.00 38.33 3.85
3508 10114 5.868258 GCAAGTTCAGTAGTTTAGTACTCCC 59.132 44.000 0.00 0.00 38.33 4.30
3509 10115 6.295180 GCAAGTTCAGTAGTTTAGTACTCCCT 60.295 42.308 0.00 0.00 38.33 4.20
3510 10116 7.314393 CAAGTTCAGTAGTTTAGTACTCCCTC 58.686 42.308 0.00 0.00 38.33 4.30
3511 10117 5.951148 AGTTCAGTAGTTTAGTACTCCCTCC 59.049 44.000 0.00 0.00 38.33 4.30
3512 10118 4.521146 TCAGTAGTTTAGTACTCCCTCCG 58.479 47.826 0.00 0.00 38.33 4.63
3513 10119 4.018960 TCAGTAGTTTAGTACTCCCTCCGT 60.019 45.833 0.00 0.00 38.33 4.69
3514 10120 4.335037 CAGTAGTTTAGTACTCCCTCCGTC 59.665 50.000 0.00 0.00 38.33 4.79
3515 10121 2.732763 AGTTTAGTACTCCCTCCGTCC 58.267 52.381 0.00 0.00 28.23 4.79
3516 10122 1.753649 GTTTAGTACTCCCTCCGTCCC 59.246 57.143 0.00 0.00 0.00 4.46
3517 10123 0.107017 TTAGTACTCCCTCCGTCCCG 60.107 60.000 0.00 0.00 0.00 5.14
3518 10124 0.982852 TAGTACTCCCTCCGTCCCGA 60.983 60.000 0.00 0.00 0.00 5.14
3519 10125 1.379044 GTACTCCCTCCGTCCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
3520 10126 0.967380 GTACTCCCTCCGTCCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
3521 10127 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
3522 10128 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.00 0.00 1.40
3523 10129 0.388294 CTCCCTCCGTCCCGAAATAC 59.612 60.000 0.00 0.00 0.00 1.89
3524 10130 0.032813 TCCCTCCGTCCCGAAATACT 60.033 55.000 0.00 0.00 0.00 2.12
3525 10131 0.828677 CCCTCCGTCCCGAAATACTT 59.171 55.000 0.00 0.00 0.00 2.24
3526 10132 1.472728 CCCTCCGTCCCGAAATACTTG 60.473 57.143 0.00 0.00 0.00 3.16
3527 10133 1.206371 CCTCCGTCCCGAAATACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
3528 10134 2.537401 CTCCGTCCCGAAATACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
3529 10135 1.135315 TCCGTCCCGAAATACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
3530 10136 1.135315 CCGTCCCGAAATACTTGTCGA 60.135 52.381 0.00 0.00 39.64 4.20
3531 10137 2.598589 CGTCCCGAAATACTTGTCGAA 58.401 47.619 0.00 0.00 39.64 3.71
3532 10138 2.597305 CGTCCCGAAATACTTGTCGAAG 59.403 50.000 0.00 0.00 39.64 3.79
3533 10139 3.671433 CGTCCCGAAATACTTGTCGAAGA 60.671 47.826 0.00 0.00 39.64 2.87
3534 10140 4.240096 GTCCCGAAATACTTGTCGAAGAA 58.760 43.478 0.00 0.00 39.69 2.52
3535 10141 4.687483 GTCCCGAAATACTTGTCGAAGAAA 59.313 41.667 0.00 0.00 39.69 2.52
3536 10142 5.350640 GTCCCGAAATACTTGTCGAAGAAAT 59.649 40.000 0.00 0.00 39.69 2.17
3537 10143 5.350365 TCCCGAAATACTTGTCGAAGAAATG 59.650 40.000 0.00 0.00 39.69 2.32
3538 10144 5.447279 CCCGAAATACTTGTCGAAGAAATGG 60.447 44.000 0.00 0.00 39.69 3.16
3539 10145 5.350365 CCGAAATACTTGTCGAAGAAATGGA 59.650 40.000 0.00 0.00 39.69 3.41
3540 10146 6.037172 CCGAAATACTTGTCGAAGAAATGGAT 59.963 38.462 0.00 0.00 39.69 3.41
3541 10147 7.223971 CCGAAATACTTGTCGAAGAAATGGATA 59.776 37.037 0.00 0.00 39.69 2.59
3542 10148 8.600625 CGAAATACTTGTCGAAGAAATGGATAA 58.399 33.333 0.00 0.00 39.69 1.75
3547 10153 8.970691 ACTTGTCGAAGAAATGGATAAAAATG 57.029 30.769 0.00 0.00 39.69 2.32
3548 10154 8.792633 ACTTGTCGAAGAAATGGATAAAAATGA 58.207 29.630 0.00 0.00 39.69 2.57
3549 10155 9.624697 CTTGTCGAAGAAATGGATAAAAATGAA 57.375 29.630 0.00 0.00 39.69 2.57
3551 10157 9.571810 TGTCGAAGAAATGGATAAAAATGAATG 57.428 29.630 0.00 0.00 39.69 2.67
3552 10158 9.573133 GTCGAAGAAATGGATAAAAATGAATGT 57.427 29.630 0.00 0.00 39.69 2.71
3591 10197 9.477484 AATATGTCTAGTTACATCAATTCGTCC 57.523 33.333 0.56 0.00 40.52 4.79
3592 10198 5.337554 TGTCTAGTTACATCAATTCGTCCG 58.662 41.667 0.00 0.00 0.00 4.79
3593 10199 5.124297 TGTCTAGTTACATCAATTCGTCCGA 59.876 40.000 0.00 0.00 0.00 4.55
3594 10200 5.454877 GTCTAGTTACATCAATTCGTCCGAC 59.545 44.000 0.00 0.00 0.00 4.79
3595 10201 3.176708 AGTTACATCAATTCGTCCGACG 58.823 45.455 14.94 14.94 44.19 5.12
3605 10211 0.374758 TCGTCCGACGAGTATTTCCG 59.625 55.000 19.51 0.00 46.73 4.30
3606 10212 0.590732 CGTCCGACGAGTATTTCCGG 60.591 60.000 16.03 0.00 46.05 5.14
3607 10213 0.734889 GTCCGACGAGTATTTCCGGA 59.265 55.000 0.00 0.00 45.74 5.14
3608 10214 0.734889 TCCGACGAGTATTTCCGGAC 59.265 55.000 1.83 0.00 43.47 4.79
3609 10215 0.590732 CCGACGAGTATTTCCGGACG 60.591 60.000 1.83 5.89 42.49 4.79
3610 10216 0.590732 CGACGAGTATTTCCGGACGG 60.591 60.000 1.83 3.96 0.00 4.79
3611 10217 0.734889 GACGAGTATTTCCGGACGGA 59.265 55.000 1.83 9.76 43.52 4.69
3612 10218 0.737219 ACGAGTATTTCCGGACGGAG 59.263 55.000 13.64 3.15 46.06 4.63
3613 10219 0.030369 CGAGTATTTCCGGACGGAGG 59.970 60.000 13.64 0.00 46.06 4.30
3614 10220 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
3686 10292 7.944729 ATGATGTTATGCAGTTAAAGTCCTT 57.055 32.000 0.00 0.00 0.00 3.36
3712 10318 6.876257 CCTATTGGTACTTCAGATCATAAGGC 59.124 42.308 10.69 4.55 0.00 4.35
3836 10446 3.081804 GCTGGTAGCATACAACCTTGTT 58.918 45.455 0.00 0.00 45.43 2.83
3874 10486 3.304794 GCAACTAATGTGTGGCCGTTTTA 60.305 43.478 0.00 0.00 0.00 1.52
3889 10501 3.497262 CCGTTTTACTCTTGGGTCTGAAC 59.503 47.826 0.00 0.00 0.00 3.18
3912 10524 1.517242 CTGACCTTTGCTTCTTCGCT 58.483 50.000 0.00 0.00 0.00 4.93
3959 10571 0.101399 CTCGACAGAAGATGACCCGG 59.899 60.000 0.00 0.00 0.00 5.73
3990 10602 3.785859 GCTGACCAGGGCCATCGA 61.786 66.667 6.18 0.00 0.00 3.59
4021 10633 1.378250 GGTCCTGCAGCAGCTGATT 60.378 57.895 27.39 0.72 41.71 2.57
4029 10641 1.077644 AGCAGCTGATTCTGGCCTG 60.078 57.895 20.43 2.92 34.74 4.85
4049 10661 4.404073 CCTGCAACTCTATAAGGTGAGACT 59.596 45.833 0.00 0.00 46.43 3.24
4176 10788 4.588899 TGACTGATTTACCTTCACATGGG 58.411 43.478 0.00 0.00 0.00 4.00
4277 10890 7.171678 AGCAACTTGTACTCTGTACTCATTTTC 59.828 37.037 8.94 0.00 0.00 2.29
4278 10891 7.571428 GCAACTTGTACTCTGTACTCATTTTCC 60.571 40.741 8.94 0.00 0.00 3.13
4279 10892 6.465084 ACTTGTACTCTGTACTCATTTTCCC 58.535 40.000 8.94 0.00 0.00 3.97
4328 10941 8.175925 TGTATGTGAAATTCAGATTTGTGGAA 57.824 30.769 10.90 0.00 35.65 3.53
4352 10965 2.116238 GAGTGGGTGTAAGAGGGCATA 58.884 52.381 0.00 0.00 0.00 3.14
4366 10995 1.334869 GGGCATATTGTTGCTCTTCGG 59.665 52.381 0.00 0.00 40.09 4.30
4470 11106 1.227645 TGCTGCTGCTGAAAGACGT 60.228 52.632 17.00 0.00 40.48 4.34
4476 11112 2.175184 CTGCTGAAAGACGTTGCCCG 62.175 60.000 0.00 0.00 44.03 6.13
4488 11124 1.202313 CGTTGCCCGTTCCAAAAGAAA 60.202 47.619 0.00 0.00 35.85 2.52
4493 11129 1.342819 CCCGTTCCAAAAGAAATGGCA 59.657 47.619 0.00 0.00 37.88 4.92
4498 11134 4.679654 CGTTCCAAAAGAAATGGCACTAAC 59.320 41.667 0.00 0.00 37.88 2.34
4504 11140 3.059352 AGAAATGGCACTAACGCTTCT 57.941 42.857 0.00 0.00 0.00 2.85
4604 11240 9.958234 TTCATGAACATTTCTTGAAAATTACGA 57.042 25.926 3.38 0.00 45.24 3.43
4605 11241 9.958234 TCATGAACATTTCTTGAAAATTACGAA 57.042 25.926 0.00 0.00 39.83 3.85
4606 11242 9.993881 CATGAACATTTCTTGAAAATTACGAAC 57.006 29.630 0.00 0.00 37.08 3.95
4607 11243 9.743057 ATGAACATTTCTTGAAAATTACGAACA 57.257 25.926 0.00 0.00 0.00 3.18
4608 11244 9.743057 TGAACATTTCTTGAAAATTACGAACAT 57.257 25.926 0.00 0.00 0.00 2.71
4735 11371 8.702163 AGTTTGTGAACTTTATTTCAGGTTTG 57.298 30.769 0.00 0.00 43.48 2.93
4736 11372 8.527810 AGTTTGTGAACTTTATTTCAGGTTTGA 58.472 29.630 0.00 0.00 43.48 2.69
4737 11373 9.313118 GTTTGTGAACTTTATTTCAGGTTTGAT 57.687 29.630 0.00 0.00 36.15 2.57
4738 11374 9.883142 TTTGTGAACTTTATTTCAGGTTTGATT 57.117 25.926 0.00 0.00 36.15 2.57
4739 11375 9.883142 TTGTGAACTTTATTTCAGGTTTGATTT 57.117 25.926 0.00 0.00 36.15 2.17
4740 11376 9.883142 TGTGAACTTTATTTCAGGTTTGATTTT 57.117 25.926 0.00 0.00 36.15 1.82
4888 11524 6.990341 ATTCAAATAAAAAGGATTGCCAGC 57.010 33.333 0.00 0.00 36.29 4.85
4889 11525 4.831107 TCAAATAAAAAGGATTGCCAGCC 58.169 39.130 0.00 0.00 36.29 4.85
4890 11526 4.531732 TCAAATAAAAAGGATTGCCAGCCT 59.468 37.500 0.00 0.00 36.29 4.58
4891 11527 5.012975 TCAAATAAAAAGGATTGCCAGCCTT 59.987 36.000 0.60 0.60 46.09 4.35
4899 11535 5.796424 AGGATTGCCAGCCTTTTATAATG 57.204 39.130 0.00 0.00 36.29 1.90
4900 11536 5.211201 AGGATTGCCAGCCTTTTATAATGT 58.789 37.500 0.00 0.00 36.29 2.71
4901 11537 6.372931 AGGATTGCCAGCCTTTTATAATGTA 58.627 36.000 0.00 0.00 36.29 2.29
4902 11538 6.491403 AGGATTGCCAGCCTTTTATAATGTAG 59.509 38.462 0.00 0.00 36.29 2.74
4903 11539 5.514274 TTGCCAGCCTTTTATAATGTAGC 57.486 39.130 0.00 0.00 0.00 3.58
4904 11540 4.531854 TGCCAGCCTTTTATAATGTAGCA 58.468 39.130 0.00 0.00 0.00 3.49
4905 11541 4.952957 TGCCAGCCTTTTATAATGTAGCAA 59.047 37.500 0.00 0.00 0.00 3.91
4906 11542 5.163561 TGCCAGCCTTTTATAATGTAGCAAC 60.164 40.000 0.00 0.00 0.00 4.17
4907 11543 5.510671 CCAGCCTTTTATAATGTAGCAACG 58.489 41.667 0.00 0.00 0.00 4.10
4908 11544 5.505654 CCAGCCTTTTATAATGTAGCAACGG 60.506 44.000 0.00 0.00 0.00 4.44
4909 11545 5.295787 CAGCCTTTTATAATGTAGCAACGGA 59.704 40.000 0.00 0.00 0.00 4.69
4910 11546 5.527582 AGCCTTTTATAATGTAGCAACGGAG 59.472 40.000 0.00 0.00 0.00 4.63
4912 11548 6.715464 CCTTTTATAATGTAGCAACGGAGTG 58.285 40.000 0.00 0.00 45.00 3.51
4913 11549 6.537301 CCTTTTATAATGTAGCAACGGAGTGA 59.463 38.462 0.00 0.00 45.00 3.41
4914 11550 7.065324 CCTTTTATAATGTAGCAACGGAGTGAA 59.935 37.037 0.00 0.00 45.00 3.18
4915 11551 8.500753 TTTTATAATGTAGCAACGGAGTGAAT 57.499 30.769 0.00 0.00 45.00 2.57
4916 11552 9.602568 TTTTATAATGTAGCAACGGAGTGAATA 57.397 29.630 0.00 0.00 45.00 1.75
4917 11553 9.602568 TTTATAATGTAGCAACGGAGTGAATAA 57.397 29.630 0.00 0.00 45.00 1.40
4918 11554 9.602568 TTATAATGTAGCAACGGAGTGAATAAA 57.397 29.630 0.00 0.00 45.00 1.40
4919 11555 6.811253 AATGTAGCAACGGAGTGAATAAAA 57.189 33.333 0.00 0.00 45.00 1.52
4920 11556 6.811253 ATGTAGCAACGGAGTGAATAAAAA 57.189 33.333 0.00 0.00 45.00 1.94
4921 11557 6.811253 TGTAGCAACGGAGTGAATAAAAAT 57.189 33.333 0.00 0.00 45.00 1.82
4922 11558 7.908827 TGTAGCAACGGAGTGAATAAAAATA 57.091 32.000 0.00 0.00 45.00 1.40
4923 11559 8.500753 TGTAGCAACGGAGTGAATAAAAATAT 57.499 30.769 0.00 0.00 45.00 1.28
4924 11560 8.394877 TGTAGCAACGGAGTGAATAAAAATATG 58.605 33.333 0.00 0.00 45.00 1.78
4925 11561 6.265577 AGCAACGGAGTGAATAAAAATATGC 58.734 36.000 0.00 0.00 45.00 3.14
4926 11562 6.095440 AGCAACGGAGTGAATAAAAATATGCT 59.905 34.615 0.00 0.00 45.00 3.79
4927 11563 7.282224 AGCAACGGAGTGAATAAAAATATGCTA 59.718 33.333 0.00 0.00 45.00 3.49
4928 11564 7.913297 GCAACGGAGTGAATAAAAATATGCTAA 59.087 33.333 0.00 0.00 45.00 3.09
4929 11565 9.438291 CAACGGAGTGAATAAAAATATGCTAAG 57.562 33.333 0.00 0.00 45.00 2.18
4930 11566 7.639945 ACGGAGTGAATAAAAATATGCTAAGC 58.360 34.615 0.00 0.00 42.51 3.09
4931 11567 7.499232 ACGGAGTGAATAAAAATATGCTAAGCT 59.501 33.333 0.00 0.00 42.51 3.74
4932 11568 8.988934 CGGAGTGAATAAAAATATGCTAAGCTA 58.011 33.333 0.00 0.00 0.00 3.32
4943 11579 2.588027 GCTAAGCTAGCGAGAGGTTT 57.412 50.000 20.16 6.18 42.62 3.27
4944 11580 3.712091 GCTAAGCTAGCGAGAGGTTTA 57.288 47.619 20.16 6.95 42.62 2.01
4945 11581 4.245845 GCTAAGCTAGCGAGAGGTTTAT 57.754 45.455 20.16 0.00 42.62 1.40
4946 11582 3.984633 GCTAAGCTAGCGAGAGGTTTATG 59.015 47.826 20.16 4.23 42.62 1.90
4947 11583 3.460857 AAGCTAGCGAGAGGTTTATGG 57.539 47.619 9.55 0.00 44.26 2.74
4948 11584 1.689273 AGCTAGCGAGAGGTTTATGGG 59.311 52.381 9.55 0.00 44.26 4.00
4949 11585 1.874320 GCTAGCGAGAGGTTTATGGGC 60.874 57.143 0.00 0.00 44.26 5.36
4950 11586 1.689273 CTAGCGAGAGGTTTATGGGCT 59.311 52.381 0.00 0.00 44.26 5.19
4951 11587 0.179000 AGCGAGAGGTTTATGGGCTG 59.821 55.000 0.00 0.00 40.01 4.85
4952 11588 0.178068 GCGAGAGGTTTATGGGCTGA 59.822 55.000 0.00 0.00 0.00 4.26
4953 11589 1.941325 CGAGAGGTTTATGGGCTGAC 58.059 55.000 0.00 0.00 0.00 3.51
4954 11590 1.482593 CGAGAGGTTTATGGGCTGACT 59.517 52.381 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 0.524862 CAAACACCTCCATGCTGAGC 59.475 55.000 0.00 0.00 0.00 4.26
63 64 0.609662 AATGGCAAACACCTCCATGC 59.390 50.000 0.00 0.00 40.24 4.06
107 108 2.092681 CACCAATGAAGTCACATCGTCG 59.907 50.000 0.00 0.00 0.00 5.12
111 112 3.438087 CACCTCACCAATGAAGTCACATC 59.562 47.826 0.00 0.00 33.30 3.06
117 118 1.901591 CAGCACCTCACCAATGAAGT 58.098 50.000 0.00 0.00 33.30 3.01
147 148 0.734889 CATCCATGTTGGTTCGCTCC 59.265 55.000 0.00 0.00 39.03 4.70
169 170 0.394565 GCCCACTAGGAATCGAGCAT 59.605 55.000 0.00 0.00 38.24 3.79
174 175 1.447643 CCCTGCCCACTAGGAATCG 59.552 63.158 0.00 0.00 37.52 3.34
179 180 4.115199 GCACCCCTGCCCACTAGG 62.115 72.222 0.00 0.00 37.45 3.02
180 181 2.683465 ATGCACCCCTGCCCACTAG 61.683 63.158 0.00 0.00 43.51 2.57
181 182 2.613696 ATGCACCCCTGCCCACTA 60.614 61.111 0.00 0.00 43.51 2.74
182 183 4.371417 CATGCACCCCTGCCCACT 62.371 66.667 0.00 0.00 43.51 4.00
188 189 1.019278 GTCGTACACATGCACCCCTG 61.019 60.000 0.00 0.00 0.00 4.45
193 194 3.855379 TCTAAATCGTCGTACACATGCAC 59.145 43.478 0.00 0.00 0.00 4.57
251 252 0.602638 GACACCCACAAGCATCGTCA 60.603 55.000 0.00 0.00 0.00 4.35
280 281 4.147449 CCACATCGGAGCCTGCGA 62.147 66.667 11.62 11.62 45.91 5.10
283 284 1.742880 CACACCACATCGGAGCCTG 60.743 63.158 0.00 0.00 38.63 4.85
287 288 4.169102 CGACACACCACATCGGAG 57.831 61.111 0.00 0.00 38.63 4.63
304 305 1.005450 AGAGAGACAGAGTGAGGTCCC 59.995 57.143 0.00 0.00 34.58 4.46
305 306 2.290641 TGAGAGAGACAGAGTGAGGTCC 60.291 54.545 0.00 0.00 34.58 4.46
306 307 2.747446 GTGAGAGAGACAGAGTGAGGTC 59.253 54.545 0.00 0.00 0.00 3.85
307 308 2.375174 AGTGAGAGAGACAGAGTGAGGT 59.625 50.000 0.00 0.00 0.00 3.85
308 309 3.071874 AGTGAGAGAGACAGAGTGAGG 57.928 52.381 0.00 0.00 0.00 3.86
309 310 3.191162 CCAAGTGAGAGAGACAGAGTGAG 59.809 52.174 0.00 0.00 0.00 3.51
310 311 3.153130 CCAAGTGAGAGAGACAGAGTGA 58.847 50.000 0.00 0.00 0.00 3.41
311 312 2.890311 ACCAAGTGAGAGAGACAGAGTG 59.110 50.000 0.00 0.00 0.00 3.51
312 313 3.237268 ACCAAGTGAGAGAGACAGAGT 57.763 47.619 0.00 0.00 0.00 3.24
313 314 3.305950 CCAACCAAGTGAGAGAGACAGAG 60.306 52.174 0.00 0.00 0.00 3.35
360 361 4.321452 CCACCATTGTCAATCTGAAACTGG 60.321 45.833 0.00 2.50 0.00 4.00
361 362 4.801891 CCACCATTGTCAATCTGAAACTG 58.198 43.478 0.00 0.00 0.00 3.16
372 373 1.003839 GAGGACGCCACCATTGTCA 60.004 57.895 0.00 0.00 34.32 3.58
412 413 4.072131 ACTCGTGCCTCAACAAATAATGT 58.928 39.130 0.00 0.00 46.82 2.71
421 422 0.951040 CCTCCAACTCGTGCCTCAAC 60.951 60.000 0.00 0.00 0.00 3.18
423 424 1.407656 AACCTCCAACTCGTGCCTCA 61.408 55.000 0.00 0.00 0.00 3.86
427 428 2.271800 CATAGAACCTCCAACTCGTGC 58.728 52.381 0.00 0.00 0.00 5.34
464 465 4.408182 AGCAATCTAGAATAACGGCAGT 57.592 40.909 0.00 0.00 0.00 4.40
473 474 3.525199 ACCCCTCACAAGCAATCTAGAAT 59.475 43.478 0.00 0.00 0.00 2.40
501 502 1.079819 CTCACCCGCAATGACGTCT 60.080 57.895 17.92 0.00 0.00 4.18
555 556 2.203523 TTGACGGGTGGGTCTCGA 60.204 61.111 0.00 0.00 43.64 4.04
582 583 1.733389 CGCATCAACCACCTTGATTGC 60.733 52.381 0.00 0.00 45.89 3.56
589 590 0.396435 TTCAGACGCATCAACCACCT 59.604 50.000 0.00 0.00 0.00 4.00
598 599 3.119101 ACGAACTATCCTTTCAGACGCAT 60.119 43.478 0.00 0.00 0.00 4.73
605 606 6.367969 GCAACTCTAAACGAACTATCCTTTCA 59.632 38.462 0.00 0.00 0.00 2.69
630 631 2.231478 TCCGCTCACCTTCAAAGAGTAG 59.769 50.000 0.00 0.00 0.00 2.57
632 633 1.001406 CTCCGCTCACCTTCAAAGAGT 59.999 52.381 0.00 0.00 0.00 3.24
664 666 2.350772 CCAATCAGACCAACAAAGACGC 60.351 50.000 0.00 0.00 0.00 5.19
666 668 3.253432 GTCCCAATCAGACCAACAAAGAC 59.747 47.826 0.00 0.00 0.00 3.01
668 670 3.221771 TGTCCCAATCAGACCAACAAAG 58.778 45.455 0.00 0.00 33.09 2.77
681 683 1.135527 CGCATCAAAGCATGTCCCAAT 59.864 47.619 0.00 0.00 0.00 3.16
691 693 3.813529 ACAACTCTAACGCATCAAAGC 57.186 42.857 0.00 0.00 0.00 3.51
701 703 7.913297 TCAAGCACACAAAAATACAACTCTAAC 59.087 33.333 0.00 0.00 0.00 2.34
704 706 6.095440 ACTCAAGCACACAAAAATACAACTCT 59.905 34.615 0.00 0.00 0.00 3.24
716 718 3.876914 CCTACTCAAACTCAAGCACACAA 59.123 43.478 0.00 0.00 0.00 3.33
726 728 5.057149 TGAGAAGCAAACCTACTCAAACTC 58.943 41.667 0.00 0.00 35.20 3.01
787 789 5.704888 TGGCATACCGTAATTTTCTGTTTG 58.295 37.500 0.00 0.00 39.70 2.93
791 793 5.751680 CAGATGGCATACCGTAATTTTCTG 58.248 41.667 0.00 0.00 39.70 3.02
793 795 4.537015 GCAGATGGCATACCGTAATTTTC 58.463 43.478 0.00 0.00 43.97 2.29
794 796 3.003275 CGCAGATGGCATACCGTAATTTT 59.997 43.478 0.00 0.00 45.17 1.82
798 800 0.462375 ACGCAGATGGCATACCGTAA 59.538 50.000 15.04 0.00 45.17 3.18
799 801 0.249280 CACGCAGATGGCATACCGTA 60.249 55.000 15.84 0.00 45.17 4.02
801 803 2.885676 GCACGCAGATGGCATACCG 61.886 63.158 0.00 6.16 45.17 4.02
802 804 1.502163 GAGCACGCAGATGGCATACC 61.502 60.000 0.00 0.00 45.17 2.73
803 805 0.531532 AGAGCACGCAGATGGCATAC 60.532 55.000 0.00 0.00 45.17 2.39
884 890 2.509336 CCCACGACATCTGCCGTC 60.509 66.667 0.00 0.00 36.83 4.79
896 902 1.639298 GCTGCAGAACTTAGCCCACG 61.639 60.000 20.43 0.00 0.00 4.94
945 952 3.310227 CGTCGCAGATCTACTAGTGACTT 59.690 47.826 17.44 0.00 40.67 3.01
952 959 3.252701 GGGATTTCGTCGCAGATCTACTA 59.747 47.826 0.00 0.00 40.67 1.82
953 960 2.034812 GGGATTTCGTCGCAGATCTACT 59.965 50.000 0.00 0.00 40.67 2.57
954 961 2.395654 GGGATTTCGTCGCAGATCTAC 58.604 52.381 0.00 0.00 40.67 2.59
955 962 1.340248 GGGGATTTCGTCGCAGATCTA 59.660 52.381 0.00 0.00 40.67 1.98
975 982 0.107165 GGGGGATTTTCAGACGGAGG 60.107 60.000 0.00 0.00 0.00 4.30
985 992 3.709141 CCGTCCATATTTTGGGGGATTTT 59.291 43.478 0.00 0.00 46.45 1.82
989 996 0.106419 GCCGTCCATATTTTGGGGGA 60.106 55.000 7.85 0.00 46.45 4.81
990 997 1.452145 CGCCGTCCATATTTTGGGGG 61.452 60.000 0.00 0.00 46.45 5.40
991 998 0.464735 TCGCCGTCCATATTTTGGGG 60.465 55.000 0.00 0.00 46.45 4.96
1312 1356 2.998480 TCCTCGGGCAAAGGCGTA 60.998 61.111 0.00 0.00 42.47 4.42
1689 1839 0.321564 CGAAGACCTTGCCATGGACA 60.322 55.000 18.40 10.56 0.00 4.02
1845 2001 1.006102 ACTGAGCTGAAACCGGTCG 60.006 57.895 8.04 0.00 0.00 4.79
1877 2033 0.615331 ATGGTTGTCGCCTGTCATCT 59.385 50.000 0.00 0.00 0.00 2.90
1918 2077 2.800544 CGAGAACTGAAAACGTGTCCAT 59.199 45.455 0.00 0.00 0.00 3.41
1932 2091 2.510238 GCGCATGCCTCGAGAACT 60.510 61.111 15.71 0.00 33.98 3.01
2060 2237 3.875727 CACCCTGCTATTGAGATGAACAG 59.124 47.826 0.00 0.00 0.00 3.16
2072 2249 4.042934 ACACTTTCTTAACCACCCTGCTAT 59.957 41.667 0.00 0.00 0.00 2.97
2186 8541 4.987285 CCTCTTGATCATGTCCTATGTTCG 59.013 45.833 8.33 0.00 0.00 3.95
2309 8665 3.129113 GCATACATGACTGCAACATCCAA 59.871 43.478 15.98 0.00 38.28 3.53
2311 8667 2.947652 AGCATACATGACTGCAACATCC 59.052 45.455 20.72 0.00 40.88 3.51
2331 8687 8.567285 AATGTAAAGAGGTTCTTAATGTCCAG 57.433 34.615 0.00 0.00 35.27 3.86
2352 8709 7.066307 ACTTCAGGGCTTTTTATTGAAATGT 57.934 32.000 0.00 0.00 0.00 2.71
2367 8724 1.000938 CACTTCTGCAAACTTCAGGGC 60.001 52.381 0.00 0.00 32.63 5.19
2446 8807 4.178339 TGCAATATCCATATCCTCAGGGT 58.822 43.478 0.00 0.00 0.00 4.34
2448 8809 6.058553 TCTTGCAATATCCATATCCTCAGG 57.941 41.667 0.00 0.00 0.00 3.86
2459 8820 7.120285 TGCTAAGCTCAATATCTTGCAATATCC 59.880 37.037 0.00 0.00 32.11 2.59
2493 8854 3.052036 GCAGCACACCAAAGTTTACATG 58.948 45.455 0.00 0.00 0.00 3.21
2494 8855 2.692557 TGCAGCACACCAAAGTTTACAT 59.307 40.909 0.00 0.00 0.00 2.29
2537 8898 7.016153 TGTATAGTGAAATGAACAGAGGGTT 57.984 36.000 0.00 0.00 44.10 4.11
2584 8949 7.181361 TCTTCATACATGGAAAATGAAAGGGA 58.819 34.615 12.87 7.21 38.71 4.20
2850 9456 2.744494 GCAGCAGGGAGATCTACCAAAG 60.744 54.545 26.45 15.71 35.45 2.77
2851 9457 1.210478 GCAGCAGGGAGATCTACCAAA 59.790 52.381 26.45 0.00 35.45 3.28
2852 9458 0.833287 GCAGCAGGGAGATCTACCAA 59.167 55.000 26.45 0.00 35.45 3.67
2853 9459 1.395045 CGCAGCAGGGAGATCTACCA 61.395 60.000 26.45 0.00 35.45 3.25
2854 9460 1.109920 TCGCAGCAGGGAGATCTACC 61.110 60.000 17.19 17.19 32.36 3.18
2855 9461 0.747255 TTCGCAGCAGGGAGATCTAC 59.253 55.000 0.00 0.00 38.03 2.59
2856 9462 0.747255 GTTCGCAGCAGGGAGATCTA 59.253 55.000 0.00 0.00 38.03 1.98
2857 9463 1.260538 TGTTCGCAGCAGGGAGATCT 61.261 55.000 0.00 0.00 38.03 2.75
2905 9511 4.755266 TTGGACTGCTCTTAGGTTATCC 57.245 45.455 0.00 0.00 0.00 2.59
2913 9519 6.603201 CCTTTTATGGAATTGGACTGCTCTTA 59.397 38.462 0.00 0.00 0.00 2.10
2943 9549 9.177608 TCAGAAATTCCAACAATGTATAAGAGG 57.822 33.333 0.00 0.00 0.00 3.69
3160 9766 3.243068 ACCAAAACTGAGCTTAAAGTGCG 60.243 43.478 0.00 0.00 35.28 5.34
3240 9846 3.385363 TTGAACGGATTCAGGTGCACTG 61.385 50.000 17.98 12.89 45.54 3.66
3319 9925 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
3321 9927 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
3373 9979 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
3375 9981 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
3382 9988 9.824216 AGCATATACTCCCTCTGTAAACTAATA 57.176 33.333 0.00 0.00 0.00 0.98
3383 9989 8.728596 AGCATATACTCCCTCTGTAAACTAAT 57.271 34.615 0.00 0.00 0.00 1.73
3384 9990 8.005388 AGAGCATATACTCCCTCTGTAAACTAA 58.995 37.037 0.00 0.00 37.39 2.24
3385 9991 7.527796 AGAGCATATACTCCCTCTGTAAACTA 58.472 38.462 0.00 0.00 37.39 2.24
3386 9992 6.377912 AGAGCATATACTCCCTCTGTAAACT 58.622 40.000 0.00 0.00 37.39 2.66
3387 9993 6.658188 AGAGCATATACTCCCTCTGTAAAC 57.342 41.667 0.00 0.00 37.39 2.01
3388 9994 7.448777 CAGTAGAGCATATACTCCCTCTGTAAA 59.551 40.741 0.00 0.00 37.39 2.01
3389 9995 6.943146 CAGTAGAGCATATACTCCCTCTGTAA 59.057 42.308 0.00 0.00 37.39 2.41
3390 9996 6.272558 TCAGTAGAGCATATACTCCCTCTGTA 59.727 42.308 14.06 0.00 37.39 2.74
3391 9997 5.073827 TCAGTAGAGCATATACTCCCTCTGT 59.926 44.000 14.06 0.00 37.39 3.41
3392 9998 5.565509 TCAGTAGAGCATATACTCCCTCTG 58.434 45.833 0.00 6.38 37.39 3.35
3393 9999 5.851808 TCAGTAGAGCATATACTCCCTCT 57.148 43.478 0.00 0.00 37.39 3.69
3394 10000 6.007703 ACTTCAGTAGAGCATATACTCCCTC 58.992 44.000 0.00 0.00 37.39 4.30
3395 10001 5.772672 CACTTCAGTAGAGCATATACTCCCT 59.227 44.000 0.00 0.00 37.39 4.20
3396 10002 5.565834 GCACTTCAGTAGAGCATATACTCCC 60.566 48.000 0.00 0.00 39.87 4.30
3397 10003 5.465935 GCACTTCAGTAGAGCATATACTCC 58.534 45.833 0.00 0.00 39.87 3.85
3398 10004 5.465935 GGCACTTCAGTAGAGCATATACTC 58.534 45.833 0.00 0.00 41.64 2.59
3437 10043 5.487488 ACATCCTCATTAACCTGACCTGTTA 59.513 40.000 0.00 0.00 0.00 2.41
3475 10081 7.524717 AAACTACTGAACTTGCCAAATGTAT 57.475 32.000 0.00 0.00 0.00 2.29
3512 10118 3.841643 TCTTCGACAAGTATTTCGGGAC 58.158 45.455 0.00 0.00 35.89 4.46
3513 10119 4.524316 TTCTTCGACAAGTATTTCGGGA 57.476 40.909 0.00 0.00 35.89 5.14
3514 10120 5.447279 CCATTTCTTCGACAAGTATTTCGGG 60.447 44.000 0.00 0.00 35.89 5.14
3515 10121 5.350365 TCCATTTCTTCGACAAGTATTTCGG 59.650 40.000 0.00 0.00 35.89 4.30
3516 10122 6.403333 TCCATTTCTTCGACAAGTATTTCG 57.597 37.500 0.00 0.00 36.55 3.46
3522 10128 8.792633 TCATTTTTATCCATTTCTTCGACAAGT 58.207 29.630 0.00 0.00 0.00 3.16
3523 10129 9.624697 TTCATTTTTATCCATTTCTTCGACAAG 57.375 29.630 0.00 0.00 0.00 3.16
3525 10131 9.571810 CATTCATTTTTATCCATTTCTTCGACA 57.428 29.630 0.00 0.00 0.00 4.35
3526 10132 9.573133 ACATTCATTTTTATCCATTTCTTCGAC 57.427 29.630 0.00 0.00 0.00 4.20
3565 10171 9.477484 GGACGAATTGATGTAACTAGACATATT 57.523 33.333 0.00 0.00 40.18 1.28
3566 10172 7.808381 CGGACGAATTGATGTAACTAGACATAT 59.192 37.037 0.00 0.00 40.18 1.78
3567 10173 7.012610 TCGGACGAATTGATGTAACTAGACATA 59.987 37.037 0.00 0.00 40.18 2.29
3568 10174 5.977725 CGGACGAATTGATGTAACTAGACAT 59.022 40.000 0.00 0.00 42.82 3.06
3569 10175 5.124297 TCGGACGAATTGATGTAACTAGACA 59.876 40.000 0.00 0.00 0.00 3.41
3570 10176 5.454877 GTCGGACGAATTGATGTAACTAGAC 59.545 44.000 0.00 0.00 0.00 2.59
3571 10177 5.575957 GTCGGACGAATTGATGTAACTAGA 58.424 41.667 0.00 0.00 0.00 2.43
3572 10178 4.436847 CGTCGGACGAATTGATGTAACTAG 59.563 45.833 25.29 0.00 46.05 2.57
3573 10179 4.345288 CGTCGGACGAATTGATGTAACTA 58.655 43.478 25.29 0.00 46.05 2.24
3574 10180 3.176708 CGTCGGACGAATTGATGTAACT 58.823 45.455 25.29 0.00 46.05 2.24
3575 10181 3.548216 CGTCGGACGAATTGATGTAAC 57.452 47.619 25.29 0.00 46.05 2.50
3587 10193 0.590732 CCGGAAATACTCGTCGGACG 60.591 60.000 23.73 23.73 42.94 4.79
3588 10194 0.734889 TCCGGAAATACTCGTCGGAC 59.265 55.000 0.00 0.00 43.84 4.79
3589 10195 0.734889 GTCCGGAAATACTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
3590 10196 0.590732 CGTCCGGAAATACTCGTCGG 60.591 60.000 5.23 0.00 41.80 4.79
3591 10197 0.590732 CCGTCCGGAAATACTCGTCG 60.591 60.000 5.23 1.25 37.50 5.12
3592 10198 0.734889 TCCGTCCGGAAATACTCGTC 59.265 55.000 5.23 0.00 42.05 4.20
3593 10199 0.737219 CTCCGTCCGGAAATACTCGT 59.263 55.000 5.23 0.00 44.66 4.18
3594 10200 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.90 44.66 4.18
3595 10201 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
3596 10202 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3597 10203 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3598 10204 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3599 10205 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3600 10206 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3601 10207 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3602 10208 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
3603 10209 0.179009 TATGTACTCCCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
3604 10210 1.607628 CTTATGTACTCCCTCCGTCCG 59.392 57.143 0.00 0.00 0.00 4.79
3605 10211 2.941480 TCTTATGTACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
3606 10212 3.256136 CCATCTTATGTACTCCCTCCGTC 59.744 52.174 0.00 0.00 0.00 4.79
3607 10213 3.231818 CCATCTTATGTACTCCCTCCGT 58.768 50.000 0.00 0.00 0.00 4.69
3608 10214 2.563179 CCCATCTTATGTACTCCCTCCG 59.437 54.545 0.00 0.00 0.00 4.63
3609 10215 3.858135 TCCCATCTTATGTACTCCCTCC 58.142 50.000 0.00 0.00 0.00 4.30
3610 10216 5.280215 CCATTCCCATCTTATGTACTCCCTC 60.280 48.000 0.00 0.00 0.00 4.30
3611 10217 4.599241 CCATTCCCATCTTATGTACTCCCT 59.401 45.833 0.00 0.00 0.00 4.20
3612 10218 4.351111 ACCATTCCCATCTTATGTACTCCC 59.649 45.833 0.00 0.00 0.00 4.30
3613 10219 5.568620 ACCATTCCCATCTTATGTACTCC 57.431 43.478 0.00 0.00 0.00 3.85
3614 10220 9.877178 CTAATACCATTCCCATCTTATGTACTC 57.123 37.037 0.00 0.00 0.00 2.59
3686 10292 7.256332 GCCTTATGATCTGAAGTACCAATAGGA 60.256 40.741 0.00 0.00 38.69 2.94
3874 10486 1.771255 AGCAAGTTCAGACCCAAGAGT 59.229 47.619 0.00 0.00 0.00 3.24
3889 10501 2.350197 CGAAGAAGCAAAGGTCAGCAAG 60.350 50.000 0.00 0.00 0.00 4.01
3912 10524 0.918983 CAGCCCTAACAATCCCCTGA 59.081 55.000 0.00 0.00 0.00 3.86
3959 10571 1.301716 TCAGCTGCCTTCGAACACC 60.302 57.895 9.47 0.00 0.00 4.16
3990 10602 2.363147 GGACCACCTCGAGCCTCT 60.363 66.667 6.99 0.00 0.00 3.69
4021 10633 2.435805 CCTTATAGAGTTGCAGGCCAGA 59.564 50.000 5.01 0.00 0.00 3.86
4029 10641 5.584253 TCAGTCTCACCTTATAGAGTTGC 57.416 43.478 0.00 0.00 33.63 4.17
4049 10661 1.374252 GGGTTTCGCTTCGAGCTCA 60.374 57.895 15.40 0.00 39.60 4.26
4176 10788 2.482721 TGTACAAGCTAAAAAGCTCCGC 59.517 45.455 0.00 0.00 45.54 5.54
4250 10862 5.531122 TGAGTACAGAGTACAAGTTGCTT 57.469 39.130 1.81 0.00 0.00 3.91
4278 10891 6.659824 ACTATAAATTTCTGTGTACAGGGGG 58.340 40.000 11.76 0.00 43.91 5.40
4279 10892 7.610305 ACAACTATAAATTTCTGTGTACAGGGG 59.390 37.037 11.76 0.00 43.91 4.79
4328 10941 1.909302 CCCTCTTACACCCACTCATGT 59.091 52.381 0.00 0.00 0.00 3.21
4352 10965 3.214328 AGTGAAACCGAAGAGCAACAAT 58.786 40.909 0.00 0.00 37.80 2.71
4366 10995 3.902150 TGTCTGACATCTCGAGTGAAAC 58.098 45.455 13.13 8.78 0.00 2.78
4399 11035 3.062099 CGTAATGACGGTGAACCAATGAG 59.938 47.826 0.00 0.00 45.63 2.90
4470 11106 2.224161 CCATTTCTTTTGGAACGGGCAA 60.224 45.455 0.00 0.00 36.26 4.52
4476 11112 4.679654 CGTTAGTGCCATTTCTTTTGGAAC 59.320 41.667 0.00 0.00 42.39 3.62
4478 11114 3.305064 GCGTTAGTGCCATTTCTTTTGGA 60.305 43.478 0.00 0.00 36.26 3.53
4578 11214 9.958234 TCGTAATTTTCAAGAAATGTTCATGAA 57.042 25.926 3.38 3.38 43.24 2.57
4579 11215 9.958234 TTCGTAATTTTCAAGAAATGTTCATGA 57.042 25.926 0.00 0.00 35.79 3.07
4580 11216 9.993881 GTTCGTAATTTTCAAGAAATGTTCATG 57.006 29.630 0.00 0.00 0.00 3.07
4581 11217 9.743057 TGTTCGTAATTTTCAAGAAATGTTCAT 57.257 25.926 0.00 0.00 0.00 2.57
4582 11218 9.743057 ATGTTCGTAATTTTCAAGAAATGTTCA 57.257 25.926 0.00 0.00 0.00 3.18
4711 11347 8.696410 TCAAACCTGAAATAAAGTTCACAAAC 57.304 30.769 0.00 0.00 33.92 2.93
4712 11348 9.883142 AATCAAACCTGAAATAAAGTTCACAAA 57.117 25.926 0.00 0.00 34.49 2.83
4713 11349 9.883142 AAATCAAACCTGAAATAAAGTTCACAA 57.117 25.926 0.00 0.00 34.49 3.33
4714 11350 9.883142 AAAATCAAACCTGAAATAAAGTTCACA 57.117 25.926 0.00 0.00 34.49 3.58
4862 11498 9.112725 GCTGGCAATCCTTTTTATTTGAATATT 57.887 29.630 0.00 0.00 0.00 1.28
4863 11499 7.716560 GGCTGGCAATCCTTTTTATTTGAATAT 59.283 33.333 0.00 0.00 0.00 1.28
4864 11500 7.047271 GGCTGGCAATCCTTTTTATTTGAATA 58.953 34.615 0.00 0.00 0.00 1.75
4865 11501 5.882000 GGCTGGCAATCCTTTTTATTTGAAT 59.118 36.000 0.00 0.00 0.00 2.57
4866 11502 5.012975 AGGCTGGCAATCCTTTTTATTTGAA 59.987 36.000 3.38 0.00 0.00 2.69
4867 11503 4.531732 AGGCTGGCAATCCTTTTTATTTGA 59.468 37.500 3.38 0.00 0.00 2.69
4868 11504 4.835678 AGGCTGGCAATCCTTTTTATTTG 58.164 39.130 3.38 0.00 0.00 2.32
4869 11505 5.503634 AAGGCTGGCAATCCTTTTTATTT 57.496 34.783 13.20 0.00 39.53 1.40
4876 11512 5.662657 ACATTATAAAAGGCTGGCAATCCTT 59.337 36.000 13.20 13.20 44.07 3.36
4877 11513 5.211201 ACATTATAAAAGGCTGGCAATCCT 58.789 37.500 3.38 2.40 0.00 3.24
4878 11514 5.535753 ACATTATAAAAGGCTGGCAATCC 57.464 39.130 3.38 0.00 0.00 3.01
4879 11515 6.152379 GCTACATTATAAAAGGCTGGCAATC 58.848 40.000 3.38 0.00 0.00 2.67
4880 11516 5.598005 TGCTACATTATAAAAGGCTGGCAAT 59.402 36.000 3.38 0.00 0.00 3.56
4881 11517 4.952957 TGCTACATTATAAAAGGCTGGCAA 59.047 37.500 3.38 0.00 0.00 4.52
4882 11518 4.531854 TGCTACATTATAAAAGGCTGGCA 58.468 39.130 3.38 0.00 0.00 4.92
4883 11519 5.281727 GTTGCTACATTATAAAAGGCTGGC 58.718 41.667 0.00 0.00 0.00 4.85
4884 11520 5.505654 CCGTTGCTACATTATAAAAGGCTGG 60.506 44.000 0.00 0.00 0.00 4.85
4885 11521 5.295787 TCCGTTGCTACATTATAAAAGGCTG 59.704 40.000 0.00 0.00 0.00 4.85
4886 11522 5.433526 TCCGTTGCTACATTATAAAAGGCT 58.566 37.500 0.00 0.00 0.00 4.58
4887 11523 5.296035 ACTCCGTTGCTACATTATAAAAGGC 59.704 40.000 0.00 0.00 0.00 4.35
4888 11524 6.537301 TCACTCCGTTGCTACATTATAAAAGG 59.463 38.462 0.00 0.00 0.00 3.11
4889 11525 7.534085 TCACTCCGTTGCTACATTATAAAAG 57.466 36.000 0.00 0.00 0.00 2.27
4890 11526 7.908827 TTCACTCCGTTGCTACATTATAAAA 57.091 32.000 0.00 0.00 0.00 1.52
4891 11527 9.602568 TTATTCACTCCGTTGCTACATTATAAA 57.397 29.630 0.00 0.00 0.00 1.40
4892 11528 9.602568 TTTATTCACTCCGTTGCTACATTATAA 57.397 29.630 0.00 0.00 0.00 0.98
4893 11529 9.602568 TTTTATTCACTCCGTTGCTACATTATA 57.397 29.630 0.00 0.00 0.00 0.98
4894 11530 8.500753 TTTTATTCACTCCGTTGCTACATTAT 57.499 30.769 0.00 0.00 0.00 1.28
4895 11531 7.908827 TTTTATTCACTCCGTTGCTACATTA 57.091 32.000 0.00 0.00 0.00 1.90
4896 11532 6.811253 TTTTATTCACTCCGTTGCTACATT 57.189 33.333 0.00 0.00 0.00 2.71
4897 11533 6.811253 TTTTTATTCACTCCGTTGCTACAT 57.189 33.333 0.00 0.00 0.00 2.29
4898 11534 6.811253 ATTTTTATTCACTCCGTTGCTACA 57.189 33.333 0.00 0.00 0.00 2.74
4899 11535 7.376072 GCATATTTTTATTCACTCCGTTGCTAC 59.624 37.037 0.00 0.00 0.00 3.58
4900 11536 7.282224 AGCATATTTTTATTCACTCCGTTGCTA 59.718 33.333 0.00 0.00 32.88 3.49
4901 11537 6.095440 AGCATATTTTTATTCACTCCGTTGCT 59.905 34.615 0.00 0.00 0.00 3.91
4902 11538 6.265577 AGCATATTTTTATTCACTCCGTTGC 58.734 36.000 0.00 0.00 0.00 4.17
4903 11539 9.438291 CTTAGCATATTTTTATTCACTCCGTTG 57.562 33.333 0.00 0.00 0.00 4.10
4904 11540 8.129211 GCTTAGCATATTTTTATTCACTCCGTT 58.871 33.333 0.00 0.00 0.00 4.44
4905 11541 7.499232 AGCTTAGCATATTTTTATTCACTCCGT 59.501 33.333 7.07 0.00 0.00 4.69
4906 11542 7.865707 AGCTTAGCATATTTTTATTCACTCCG 58.134 34.615 7.07 0.00 0.00 4.63
4925 11561 4.551388 CCATAAACCTCTCGCTAGCTTAG 58.449 47.826 13.93 10.24 0.00 2.18
4926 11562 3.321111 CCCATAAACCTCTCGCTAGCTTA 59.679 47.826 13.93 2.97 0.00 3.09
4927 11563 2.103263 CCCATAAACCTCTCGCTAGCTT 59.897 50.000 13.93 0.49 0.00 3.74
4928 11564 1.689273 CCCATAAACCTCTCGCTAGCT 59.311 52.381 13.93 0.00 0.00 3.32
4929 11565 1.874320 GCCCATAAACCTCTCGCTAGC 60.874 57.143 4.06 4.06 0.00 3.42
4930 11566 1.689273 AGCCCATAAACCTCTCGCTAG 59.311 52.381 0.00 0.00 0.00 3.42
4931 11567 1.412710 CAGCCCATAAACCTCTCGCTA 59.587 52.381 0.00 0.00 0.00 4.26
4932 11568 0.179000 CAGCCCATAAACCTCTCGCT 59.821 55.000 0.00 0.00 0.00 4.93
4933 11569 0.178068 TCAGCCCATAAACCTCTCGC 59.822 55.000 0.00 0.00 0.00 5.03
4934 11570 1.482593 AGTCAGCCCATAAACCTCTCG 59.517 52.381 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.