Multiple sequence alignment - TraesCS3B01G503300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G503300 chr3B 100.000 4163 0 0 1 4163 747492004 747496166 0.000000e+00 7688.0
1 TraesCS3B01G503300 chr3B 96.280 3763 104 18 1 3758 744420892 744417161 0.000000e+00 6141.0
2 TraesCS3B01G503300 chr3B 86.885 1403 138 22 1019 2414 745203414 745202051 0.000000e+00 1530.0
3 TraesCS3B01G503300 chr3B 85.619 1356 146 33 1062 2402 745474836 745473515 0.000000e+00 1378.0
4 TraesCS3B01G503300 chr3B 86.593 1089 138 6 980 2065 744590532 744591615 0.000000e+00 1195.0
5 TraesCS3B01G503300 chr3B 86.593 1089 138 6 980 2065 746856426 746855343 0.000000e+00 1195.0
6 TraesCS3B01G503300 chr3B 83.375 1203 160 25 955 2122 744513001 744511804 0.000000e+00 1077.0
7 TraesCS3B01G503300 chr3B 84.220 1128 151 17 1020 2122 747384364 747385489 0.000000e+00 1072.0
8 TraesCS3B01G503300 chr3B 85.602 507 65 7 2482 2982 744511373 744510869 3.690000e-145 525.0
9 TraesCS3B01G503300 chr3B 79.178 365 34 23 3567 3911 744216139 744215797 9.060000e-52 215.0
10 TraesCS3B01G503300 chr3B 84.848 99 9 2 3624 3722 744324335 744324243 1.230000e-15 95.3
11 TraesCS3B01G503300 chr3B 100.000 39 0 0 4125 4163 744416537 744416499 5.770000e-09 73.1
12 TraesCS3B01G503300 chr3B 96.970 33 0 1 4079 4110 744416572 744416604 2.000000e-03 54.7
13 TraesCS3B01G503300 chr3D 91.203 2626 147 43 945 3553 560235201 560232643 0.000000e+00 3493.0
14 TraesCS3B01G503300 chr3D 83.922 1387 178 30 992 2359 560551529 560552889 0.000000e+00 1284.0
15 TraesCS3B01G503300 chr3D 86.486 1073 121 18 1064 2117 560785843 560784776 0.000000e+00 1157.0
16 TraesCS3B01G503300 chr3D 85.915 994 120 13 955 1941 560269669 560268689 0.000000e+00 1042.0
17 TraesCS3B01G503300 chr3D 78.968 1027 135 44 2463 3439 560268129 560267134 3.530000e-175 625.0
18 TraesCS3B01G503300 chr3D 84.314 510 66 12 2507 3004 560285223 560284716 1.740000e-133 486.0
19 TraesCS3B01G503300 chr3D 88.353 249 21 2 2161 2409 560784652 560784412 4.070000e-75 292.0
20 TraesCS3B01G503300 chr3D 75.413 484 56 30 3567 4007 560110351 560109888 4.280000e-40 176.0
21 TraesCS3B01G503300 chr3D 76.730 318 36 22 3608 3911 560188961 560188668 4.340000e-30 143.0
22 TraesCS3B01G503300 chr3D 79.263 217 21 7 3804 3997 259362973 259363188 3.380000e-26 130.0
23 TraesCS3B01G503300 chr3D 94.444 54 3 0 3048 3101 560284650 560284597 2.670000e-12 84.2
24 TraesCS3B01G503300 chr3A 91.684 2417 156 22 1 2403 696333976 696331591 0.000000e+00 3308.0
25 TraesCS3B01G503300 chr3A 91.518 2417 158 24 1 2401 629085987 629088372 0.000000e+00 3284.0
26 TraesCS3B01G503300 chr3A 92.302 1247 69 14 2452 3689 629088655 629089883 0.000000e+00 1746.0
27 TraesCS3B01G503300 chr3A 94.521 657 27 4 2452 3103 696331309 696330657 0.000000e+00 1005.0
28 TraesCS3B01G503300 chr3A 83.459 532 73 8 2463 2982 696343408 696342880 8.090000e-132 481.0
29 TraesCS3B01G503300 chr3A 81.019 432 49 21 1983 2409 696599552 696599149 3.120000e-81 313.0
30 TraesCS3B01G503300 chr3A 89.815 216 16 4 2193 2408 696476927 696476718 5.300000e-69 272.0
31 TraesCS3B01G503300 chr3A 85.882 255 30 4 2150 2402 696638289 696638539 2.470000e-67 267.0
32 TraesCS3B01G503300 chr3A 78.344 471 58 20 3045 3484 696342334 696341877 8.870000e-67 265.0
33 TraesCS3B01G503300 chrUn 100.000 424 0 0 2550 2973 476666784 476666361 0.000000e+00 784.0
34 TraesCS3B01G503300 chrUn 85.938 192 24 2 90 278 182460738 182460547 7.060000e-48 202.0
35 TraesCS3B01G503300 chrUn 92.500 40 2 1 2423 2462 332808869 332808831 5.810000e-04 56.5
36 TraesCS3B01G503300 chrUn 92.500 40 2 1 2423 2462 342444008 342444046 5.810000e-04 56.5
37 TraesCS3B01G503300 chr7D 86.979 192 22 2 90 278 44748002 44747811 3.260000e-51 213.0
38 TraesCS3B01G503300 chr7D 85.938 192 24 2 90 278 382044641 382044450 7.060000e-48 202.0
39 TraesCS3B01G503300 chr2D 86.458 192 23 2 90 278 306134676 306134485 1.520000e-49 207.0
40 TraesCS3B01G503300 chr6D 85.938 192 24 2 90 278 172753460 172753269 7.060000e-48 202.0
41 TraesCS3B01G503300 chr6D 84.967 153 14 5 2931 3079 201590582 201590435 3.350000e-31 147.0
42 TraesCS3B01G503300 chr1D 85.938 192 24 2 90 278 350957330 350957521 7.060000e-48 202.0
43 TraesCS3B01G503300 chr1D 76.619 278 37 14 3567 3840 385622393 385622646 1.210000e-25 128.0
44 TraesCS3B01G503300 chr1D 84.466 103 12 3 3905 4007 385623815 385623913 9.520000e-17 99.0
45 TraesCS3B01G503300 chr1B 80.309 259 42 8 3657 3911 517908600 517908853 1.980000e-43 187.0
46 TraesCS3B01G503300 chr1B 95.349 43 2 0 2420 2462 629772898 629772940 7.470000e-08 69.4
47 TraesCS3B01G503300 chr6A 82.530 166 19 5 2919 3079 341646864 341647024 2.020000e-28 137.0
48 TraesCS3B01G503300 chr7A 78.802 217 22 6 3804 3997 671907836 671908051 1.570000e-24 124.0
49 TraesCS3B01G503300 chr2A 78.341 217 23 7 3804 3997 522308453 522308668 7.310000e-23 119.0
50 TraesCS3B01G503300 chr1A 97.436 39 1 0 2423 2461 4722284 4722322 2.690000e-07 67.6
51 TraesCS3B01G503300 chr7B 97.059 34 1 0 2423 2456 548471970 548472003 1.620000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G503300 chr3B 747492004 747496166 4162 False 7688.00 7688 100.0000 1 4163 1 chr3B.!!$F4 4162
1 TraesCS3B01G503300 chr3B 744416499 744420892 4393 True 3107.05 6141 98.1400 1 4163 2 chr3B.!!$R6 4162
2 TraesCS3B01G503300 chr3B 745202051 745203414 1363 True 1530.00 1530 86.8850 1019 2414 1 chr3B.!!$R3 1395
3 TraesCS3B01G503300 chr3B 745473515 745474836 1321 True 1378.00 1378 85.6190 1062 2402 1 chr3B.!!$R4 1340
4 TraesCS3B01G503300 chr3B 744590532 744591615 1083 False 1195.00 1195 86.5930 980 2065 1 chr3B.!!$F2 1085
5 TraesCS3B01G503300 chr3B 746855343 746856426 1083 True 1195.00 1195 86.5930 980 2065 1 chr3B.!!$R5 1085
6 TraesCS3B01G503300 chr3B 747384364 747385489 1125 False 1072.00 1072 84.2200 1020 2122 1 chr3B.!!$F3 1102
7 TraesCS3B01G503300 chr3B 744510869 744513001 2132 True 801.00 1077 84.4885 955 2982 2 chr3B.!!$R7 2027
8 TraesCS3B01G503300 chr3D 560232643 560235201 2558 True 3493.00 3493 91.2030 945 3553 1 chr3D.!!$R3 2608
9 TraesCS3B01G503300 chr3D 560551529 560552889 1360 False 1284.00 1284 83.9220 992 2359 1 chr3D.!!$F2 1367
10 TraesCS3B01G503300 chr3D 560267134 560269669 2535 True 833.50 1042 82.4415 955 3439 2 chr3D.!!$R4 2484
11 TraesCS3B01G503300 chr3D 560784412 560785843 1431 True 724.50 1157 87.4195 1064 2409 2 chr3D.!!$R6 1345
12 TraesCS3B01G503300 chr3D 560284597 560285223 626 True 285.10 486 89.3790 2507 3101 2 chr3D.!!$R5 594
13 TraesCS3B01G503300 chr3A 629085987 629089883 3896 False 2515.00 3284 91.9100 1 3689 2 chr3A.!!$F2 3688
14 TraesCS3B01G503300 chr3A 696330657 696333976 3319 True 2156.50 3308 93.1025 1 3103 2 chr3A.!!$R3 3102
15 TraesCS3B01G503300 chr3A 696341877 696343408 1531 True 373.00 481 80.9015 2463 3484 2 chr3A.!!$R4 1021

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 693 0.321034 GGGACAAGACGTGTTACCCC 60.321 60.0 21.34 18.51 41.96 4.95 F
917 933 0.400815 TGTATAACCGGCCCAGGGAT 60.401 55.0 10.89 0.00 35.02 3.85 F
2327 2743 0.039618 GATGCTTCCCCAACCTGGAA 59.960 55.0 0.00 0.00 40.96 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2327 2743 2.779755 TTACATGGACATGGAGCGTT 57.220 45.000 15.94 0.0 42.91 4.84 R
2973 3671 1.153229 GGGACGGCTTGGTGGTATC 60.153 63.158 0.00 0.0 0.00 2.24 R
4043 5320 0.032952 TATATTCTCCCACGCACGGC 59.967 55.000 0.00 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 2.143122 CCTGCTCAAGTTTTCGTGCTA 58.857 47.619 0.00 0.00 0.00 3.49
310 313 1.257743 CTTCCTCTTCCCTGACGACA 58.742 55.000 0.00 0.00 0.00 4.35
312 315 1.213013 CCTCTTCCCTGACGACACG 59.787 63.158 0.00 0.00 0.00 4.49
401 404 1.549243 TAGCGTGCAACCCATCAGGA 61.549 55.000 0.00 0.00 39.89 3.86
415 418 0.904865 TCAGGACCCTGAGCGTTCAT 60.905 55.000 14.37 0.00 46.80 2.57
638 642 6.543831 GCCATCAAGTAACTTCTTGGTATCAT 59.456 38.462 6.60 0.00 43.25 2.45
688 693 0.321034 GGGACAAGACGTGTTACCCC 60.321 60.000 21.34 18.51 41.96 4.95
753 763 7.288810 TCTTCACTTGCTCCACAATATTTTT 57.711 32.000 0.00 0.00 37.72 1.94
895 911 6.867662 ATTGAAACTCTTTGTTGAGTCGAT 57.132 33.333 0.00 0.00 45.49 3.59
906 922 5.258456 TGTTGAGTCGATCCTGTATAACC 57.742 43.478 0.00 0.00 0.00 2.85
915 931 1.450211 CTGTATAACCGGCCCAGGG 59.550 63.158 0.00 0.00 35.02 4.45
916 932 1.003182 TGTATAACCGGCCCAGGGA 59.997 57.895 10.89 0.00 35.02 4.20
917 933 0.400815 TGTATAACCGGCCCAGGGAT 60.401 55.000 10.89 0.00 35.02 3.85
1425 1460 2.475466 CCGCTCATCATTGGCGCTT 61.475 57.895 7.64 0.00 46.29 4.68
2327 2743 0.039618 GATGCTTCCCCAACCTGGAA 59.960 55.000 0.00 0.00 40.96 3.53
2973 3671 9.145865 GAAGAAAGGATCTCTGTAAGTTAGTTG 57.854 37.037 0.00 0.00 37.42 3.16
2998 3697 0.834687 ACCAAGCCGTCCCTCTTGTA 60.835 55.000 0.00 0.00 38.33 2.41
3006 3705 1.373570 GTCCCTCTTGTACTGCATGC 58.626 55.000 11.82 11.82 0.00 4.06
3007 3706 0.983467 TCCCTCTTGTACTGCATGCA 59.017 50.000 21.29 21.29 0.00 3.96
3009 3708 1.674441 CCCTCTTGTACTGCATGCATG 59.326 52.381 22.97 22.70 0.00 4.06
3088 3900 4.518590 TGGTGTTACATGATGAGGTTGTTG 59.481 41.667 0.00 0.00 0.00 3.33
3196 4436 5.471257 TGTTGTTTTTCGTTTTACCTTGCT 58.529 33.333 0.00 0.00 0.00 3.91
3225 4478 2.693591 GTGTGCAGGGCTATCTAGTACA 59.306 50.000 0.00 0.00 0.00 2.90
3226 4479 2.959030 TGTGCAGGGCTATCTAGTACAG 59.041 50.000 0.00 0.00 0.00 2.74
3229 4482 4.023021 GTGCAGGGCTATCTAGTACAGTAC 60.023 50.000 2.05 2.05 0.00 2.73
3232 4485 5.412286 GCAGGGCTATCTAGTACAGTACTAC 59.588 48.000 15.43 6.56 40.14 2.73
3234 4487 6.875195 CAGGGCTATCTAGTACAGTACTACTC 59.125 46.154 15.43 6.69 40.14 2.59
3235 4488 6.788957 AGGGCTATCTAGTACAGTACTACTCT 59.211 42.308 15.43 8.68 40.14 3.24
3236 4489 7.955185 AGGGCTATCTAGTACAGTACTACTCTA 59.045 40.741 15.43 7.40 40.14 2.43
3237 4490 8.253113 GGGCTATCTAGTACAGTACTACTCTAG 58.747 44.444 15.43 15.21 40.14 2.43
3238 4491 8.806146 GGCTATCTAGTACAGTACTACTCTAGT 58.194 40.741 15.43 6.82 40.14 2.57
3317 4570 7.369803 AGTTGTTGTAGTTAGCATGAATCAG 57.630 36.000 0.00 0.00 0.00 2.90
3387 4655 2.494918 CCGGCGAGTTAGGAGTGG 59.505 66.667 9.30 0.00 0.00 4.00
3436 4711 4.331717 CCGTTTGTTTGTTAGACTGTCAGT 59.668 41.667 4.81 4.81 0.00 3.41
3457 4732 4.872691 AGTTAAGTGTGCATGCTGATAGAC 59.127 41.667 20.33 7.98 0.00 2.59
3484 4759 1.675801 CTGTGCTGCCAGAGAGGAA 59.324 57.895 11.25 0.00 41.22 3.36
3514 4789 7.328493 GGAAGGTGTTGCTTACAAATGTATTTC 59.672 37.037 0.00 0.00 38.80 2.17
3545 4822 6.975772 TCGGGTTAAACTATTATTGCAAATGC 59.024 34.615 1.71 0.00 42.50 3.56
3677 4954 3.733077 GCAGTTGCAAATGTATCTCCAGC 60.733 47.826 25.91 6.53 41.59 4.85
3705 4982 1.599606 ATCTCACTCTGCTTCGGCGT 61.600 55.000 6.85 0.00 45.37 5.68
3711 4988 1.424493 CTCTGCTTCGGCGTGATTCC 61.424 60.000 6.85 0.00 45.37 3.01
3712 4989 2.435938 TGCTTCGGCGTGATTCCC 60.436 61.111 6.85 0.00 45.37 3.97
3714 4991 1.745489 GCTTCGGCGTGATTCCCTT 60.745 57.895 6.85 0.00 0.00 3.95
3716 4993 1.421410 CTTCGGCGTGATTCCCTTCG 61.421 60.000 6.85 0.00 0.00 3.79
3718 4995 1.140161 CGGCGTGATTCCCTTCGTA 59.860 57.895 0.00 0.00 0.00 3.43
3720 4997 0.458669 GGCGTGATTCCCTTCGTAGA 59.541 55.000 0.00 0.00 0.00 2.59
3732 5009 5.416947 TCCCTTCGTAGAATGCTTCTAAAC 58.583 41.667 7.06 0.27 45.90 2.01
3758 5035 9.624373 CTTTATATATCCATCTGAATTCCAGGG 57.376 37.037 2.27 0.86 43.12 4.45
3759 5036 8.931904 TTATATATCCATCTGAATTCCAGGGA 57.068 34.615 9.60 9.60 43.12 4.20
3760 5037 7.835728 ATATATCCATCTGAATTCCAGGGAA 57.164 36.000 10.87 2.75 43.12 3.97
3762 5039 4.673328 TCCATCTGAATTCCAGGGAAAA 57.327 40.909 4.63 0.00 43.12 2.29
3763 5040 5.009436 TCCATCTGAATTCCAGGGAAAAA 57.991 39.130 4.63 0.00 43.12 1.94
3786 5063 8.554835 AAAAAGAAGCTACCATAGTCTTCTTC 57.445 34.615 21.84 11.26 46.31 2.87
3787 5064 7.489239 AAAGAAGCTACCATAGTCTTCTTCT 57.511 36.000 21.84 12.64 46.31 2.85
3788 5065 7.489239 AAGAAGCTACCATAGTCTTCTTCTT 57.511 36.000 18.94 14.26 45.31 2.52
3789 5066 7.489239 AGAAGCTACCATAGTCTTCTTCTTT 57.511 36.000 12.71 0.00 41.78 2.52
3790 5067 7.552459 AGAAGCTACCATAGTCTTCTTCTTTC 58.448 38.462 12.71 0.00 41.78 2.62
3791 5068 7.398904 AGAAGCTACCATAGTCTTCTTCTTTCT 59.601 37.037 12.71 0.00 41.78 2.52
3792 5069 7.107639 AGCTACCATAGTCTTCTTCTTTCTC 57.892 40.000 0.00 0.00 0.00 2.87
3793 5070 6.895204 AGCTACCATAGTCTTCTTCTTTCTCT 59.105 38.462 0.00 0.00 0.00 3.10
3794 5071 6.978080 GCTACCATAGTCTTCTTCTTTCTCTG 59.022 42.308 0.00 0.00 0.00 3.35
3796 5073 6.019748 ACCATAGTCTTCTTCTTTCTCTGGA 58.980 40.000 0.00 0.00 0.00 3.86
3799 5076 4.893608 AGTCTTCTTCTTTCTCTGGAAGC 58.106 43.478 0.00 0.00 38.86 3.86
3800 5077 4.346418 AGTCTTCTTCTTTCTCTGGAAGCA 59.654 41.667 0.00 0.00 38.86 3.91
3801 5078 4.450757 GTCTTCTTCTTTCTCTGGAAGCAC 59.549 45.833 0.00 0.00 38.86 4.40
3802 5079 4.101585 TCTTCTTCTTTCTCTGGAAGCACA 59.898 41.667 0.00 0.00 38.86 4.57
3803 5080 4.422073 TCTTCTTTCTCTGGAAGCACAA 57.578 40.909 0.00 0.00 38.86 3.33
3804 5081 4.130118 TCTTCTTTCTCTGGAAGCACAAC 58.870 43.478 0.00 0.00 38.86 3.32
3805 5082 3.558931 TCTTTCTCTGGAAGCACAACA 57.441 42.857 0.00 0.00 32.61 3.33
3806 5083 3.206150 TCTTTCTCTGGAAGCACAACAC 58.794 45.455 0.00 0.00 32.61 3.32
3807 5084 1.581934 TTCTCTGGAAGCACAACACG 58.418 50.000 0.00 0.00 0.00 4.49
3808 5085 0.464036 TCTCTGGAAGCACAACACGT 59.536 50.000 0.00 0.00 0.00 4.49
3810 5087 0.176910 TCTGGAAGCACAACACGTCA 59.823 50.000 0.00 0.00 0.00 4.35
3811 5088 0.583438 CTGGAAGCACAACACGTCAG 59.417 55.000 0.00 0.00 0.00 3.51
3812 5089 0.176910 TGGAAGCACAACACGTCAGA 59.823 50.000 0.00 0.00 0.00 3.27
3813 5090 0.582005 GGAAGCACAACACGTCAGAC 59.418 55.000 0.00 0.00 0.00 3.51
3814 5091 1.286501 GAAGCACAACACGTCAGACA 58.713 50.000 0.41 0.00 0.00 3.41
3815 5092 1.867233 GAAGCACAACACGTCAGACAT 59.133 47.619 0.41 0.00 0.00 3.06
3816 5093 1.502231 AGCACAACACGTCAGACATC 58.498 50.000 0.41 0.00 0.00 3.06
3817 5094 1.202521 AGCACAACACGTCAGACATCA 60.203 47.619 0.41 0.00 0.00 3.07
3818 5095 1.800586 GCACAACACGTCAGACATCAT 59.199 47.619 0.41 0.00 0.00 2.45
3819 5096 2.159787 GCACAACACGTCAGACATCATC 60.160 50.000 0.41 0.00 0.00 2.92
3832 5109 5.559148 AGACATCATCTGATCCCCTTTAC 57.441 43.478 0.00 0.00 35.81 2.01
3833 5110 4.349342 AGACATCATCTGATCCCCTTTACC 59.651 45.833 0.00 0.00 35.81 2.85
3834 5111 3.395941 ACATCATCTGATCCCCTTTACCC 59.604 47.826 0.00 0.00 31.21 3.69
3835 5112 3.144068 TCATCTGATCCCCTTTACCCA 57.856 47.619 0.00 0.00 0.00 4.51
3836 5113 3.680169 TCATCTGATCCCCTTTACCCAT 58.320 45.455 0.00 0.00 0.00 4.00
3839 5116 2.135189 CTGATCCCCTTTACCCATCCA 58.865 52.381 0.00 0.00 0.00 3.41
3840 5117 2.718609 CTGATCCCCTTTACCCATCCAT 59.281 50.000 0.00 0.00 0.00 3.41
3841 5118 2.446666 TGATCCCCTTTACCCATCCATG 59.553 50.000 0.00 0.00 0.00 3.66
3860 5137 9.234827 CATCCATGGAATTAGCATAATTCTACA 57.765 33.333 20.67 10.86 36.97 2.74
3861 5138 9.812347 ATCCATGGAATTAGCATAATTCTACAA 57.188 29.630 20.67 5.90 36.97 2.41
3862 5139 9.639563 TCCATGGAATTAGCATAATTCTACAAA 57.360 29.630 13.46 3.40 36.97 2.83
3864 5141 9.683069 CATGGAATTAGCATAATTCTACAAACC 57.317 33.333 17.33 5.18 36.97 3.27
3865 5142 8.815565 TGGAATTAGCATAATTCTACAAACCA 57.184 30.769 17.33 7.13 36.97 3.67
3867 5144 7.862873 GGAATTAGCATAATTCTACAAACCAGC 59.137 37.037 17.33 0.00 36.97 4.85
3868 5145 7.880160 ATTAGCATAATTCTACAAACCAGCA 57.120 32.000 0.00 0.00 0.00 4.41
3871 5148 6.125029 AGCATAATTCTACAAACCAGCATCT 58.875 36.000 0.00 0.00 0.00 2.90
3872 5149 6.039047 AGCATAATTCTACAAACCAGCATCTG 59.961 38.462 0.00 0.00 0.00 2.90
3873 5150 6.038603 GCATAATTCTACAAACCAGCATCTGA 59.961 38.462 0.00 0.00 32.44 3.27
3874 5151 7.415541 GCATAATTCTACAAACCAGCATCTGAA 60.416 37.037 0.00 0.00 32.44 3.02
3875 5152 6.506500 AATTCTACAAACCAGCATCTGAAG 57.493 37.500 0.00 0.00 32.44 3.02
3877 5154 2.664402 ACAAACCAGCATCTGAAGGT 57.336 45.000 0.00 0.00 32.44 3.50
3879 5156 2.624838 ACAAACCAGCATCTGAAGGTTG 59.375 45.455 0.00 0.00 43.17 3.77
3885 5162 3.423539 AGCATCTGAAGGTTGCTGTTA 57.576 42.857 2.87 0.00 45.81 2.41
3886 5163 3.754965 AGCATCTGAAGGTTGCTGTTAA 58.245 40.909 2.87 0.00 45.81 2.01
3887 5164 4.144297 AGCATCTGAAGGTTGCTGTTAAA 58.856 39.130 2.87 0.00 45.81 1.52
3888 5165 4.022849 AGCATCTGAAGGTTGCTGTTAAAC 60.023 41.667 2.87 0.00 45.81 2.01
3889 5166 4.261572 GCATCTGAAGGTTGCTGTTAAACA 60.262 41.667 0.00 0.00 37.58 2.83
3890 5167 4.893424 TCTGAAGGTTGCTGTTAAACAC 57.107 40.909 0.00 0.00 0.00 3.32
3891 5168 4.265893 TCTGAAGGTTGCTGTTAAACACA 58.734 39.130 0.00 0.00 0.00 3.72
3892 5169 4.702612 TCTGAAGGTTGCTGTTAAACACAA 59.297 37.500 0.00 0.00 33.87 3.33
3893 5170 5.184096 TCTGAAGGTTGCTGTTAAACACAAA 59.816 36.000 0.00 0.00 33.87 2.83
3894 5171 5.971763 TGAAGGTTGCTGTTAAACACAAAT 58.028 33.333 0.00 0.00 33.87 2.32
3895 5172 6.039616 TGAAGGTTGCTGTTAAACACAAATC 58.960 36.000 0.00 0.00 33.87 2.17
3896 5173 5.852282 AGGTTGCTGTTAAACACAAATCT 57.148 34.783 0.00 0.00 33.87 2.40
3897 5174 6.220726 AGGTTGCTGTTAAACACAAATCTT 57.779 33.333 0.00 0.00 33.87 2.40
3898 5175 6.042143 AGGTTGCTGTTAAACACAAATCTTG 58.958 36.000 0.00 0.00 33.87 3.02
3899 5176 6.039616 GGTTGCTGTTAAACACAAATCTTGA 58.960 36.000 0.00 0.00 33.87 3.02
3900 5177 6.533367 GGTTGCTGTTAAACACAAATCTTGAA 59.467 34.615 0.00 0.00 33.87 2.69
3901 5178 7.254084 GGTTGCTGTTAAACACAAATCTTGAAG 60.254 37.037 0.00 0.00 33.87 3.02
3903 5180 5.175673 GCTGTTAAACACAAATCTTGAAGCC 59.824 40.000 0.00 0.00 33.87 4.35
3904 5181 6.214191 TGTTAAACACAAATCTTGAAGCCA 57.786 33.333 0.00 0.00 29.87 4.75
3905 5182 6.634805 TGTTAAACACAAATCTTGAAGCCAA 58.365 32.000 0.00 0.00 29.87 4.52
3906 5183 6.756074 TGTTAAACACAAATCTTGAAGCCAAG 59.244 34.615 0.00 0.00 40.89 3.61
3907 5184 8.110172 TGTTAAACACAAATCTTGAAGCCAAGG 61.110 37.037 5.47 0.00 40.40 3.61
3915 5192 3.844577 CTTGAAGCCAAGGTCAGAATG 57.155 47.619 0.00 0.00 44.58 2.67
3916 5193 2.205022 TGAAGCCAAGGTCAGAATGG 57.795 50.000 0.00 0.00 36.16 3.16
3917 5194 1.704628 TGAAGCCAAGGTCAGAATGGA 59.295 47.619 2.92 0.00 36.27 3.41
3918 5195 2.087646 GAAGCCAAGGTCAGAATGGAC 58.912 52.381 2.92 0.00 36.27 4.02
3919 5196 1.366319 AGCCAAGGTCAGAATGGACT 58.634 50.000 2.92 0.00 37.91 3.85
3920 5197 1.280421 AGCCAAGGTCAGAATGGACTC 59.720 52.381 2.92 0.00 37.91 3.36
3921 5198 2.009042 GCCAAGGTCAGAATGGACTCG 61.009 57.143 2.92 0.00 37.91 4.18
3923 5200 1.550524 CAAGGTCAGAATGGACTCGGA 59.449 52.381 0.00 0.00 37.91 4.55
3924 5201 1.938585 AGGTCAGAATGGACTCGGAA 58.061 50.000 0.00 0.00 37.91 4.30
3925 5202 1.827969 AGGTCAGAATGGACTCGGAAG 59.172 52.381 0.00 0.00 37.91 3.46
3927 5204 2.028020 GGTCAGAATGGACTCGGAAGTT 60.028 50.000 0.00 0.00 37.91 2.66
3929 5206 1.734465 CAGAATGGACTCGGAAGTTGC 59.266 52.381 0.00 0.00 35.28 4.17
3931 5208 2.026822 AGAATGGACTCGGAAGTTGCAT 60.027 45.455 0.00 0.00 35.28 3.96
3932 5209 2.029838 ATGGACTCGGAAGTTGCATC 57.970 50.000 0.00 0.00 35.28 3.91
3933 5210 0.036388 TGGACTCGGAAGTTGCATCC 60.036 55.000 0.00 0.00 35.28 3.51
3934 5211 0.036388 GGACTCGGAAGTTGCATCCA 60.036 55.000 5.70 0.00 36.74 3.41
3935 5212 1.407437 GGACTCGGAAGTTGCATCCAT 60.407 52.381 5.70 0.00 36.74 3.41
3936 5213 1.667724 GACTCGGAAGTTGCATCCATG 59.332 52.381 5.70 0.14 36.74 3.66
3937 5214 1.003580 ACTCGGAAGTTGCATCCATGT 59.996 47.619 5.70 0.71 36.74 3.21
3938 5215 1.667724 CTCGGAAGTTGCATCCATGTC 59.332 52.381 5.70 0.00 36.74 3.06
3939 5216 0.374758 CGGAAGTTGCATCCATGTCG 59.625 55.000 5.70 0.00 36.74 4.35
3940 5217 1.737838 GGAAGTTGCATCCATGTCGA 58.262 50.000 0.00 0.00 36.92 4.20
3941 5218 1.667724 GGAAGTTGCATCCATGTCGAG 59.332 52.381 0.00 0.00 36.92 4.04
3942 5219 1.667724 GAAGTTGCATCCATGTCGAGG 59.332 52.381 0.00 0.00 0.00 4.63
3943 5220 0.615331 AGTTGCATCCATGTCGAGGT 59.385 50.000 0.00 0.00 0.00 3.85
3944 5221 1.009829 GTTGCATCCATGTCGAGGTC 58.990 55.000 0.00 0.00 0.00 3.85
3945 5222 0.904649 TTGCATCCATGTCGAGGTCT 59.095 50.000 0.00 0.00 0.00 3.85
3946 5223 0.176449 TGCATCCATGTCGAGGTCTG 59.824 55.000 0.00 0.00 0.00 3.51
3947 5224 0.461548 GCATCCATGTCGAGGTCTGA 59.538 55.000 0.00 0.00 0.00 3.27
3948 5225 1.537776 GCATCCATGTCGAGGTCTGAG 60.538 57.143 0.00 0.00 0.00 3.35
3949 5226 1.753649 CATCCATGTCGAGGTCTGAGT 59.246 52.381 0.00 0.00 0.00 3.41
3950 5227 2.801077 TCCATGTCGAGGTCTGAGTA 57.199 50.000 0.00 0.00 0.00 2.59
3951 5228 2.366533 TCCATGTCGAGGTCTGAGTAC 58.633 52.381 0.00 0.00 0.00 2.73
3952 5229 2.092323 CCATGTCGAGGTCTGAGTACA 58.908 52.381 0.00 0.00 0.00 2.90
3953 5230 2.492088 CCATGTCGAGGTCTGAGTACAA 59.508 50.000 0.00 0.00 0.00 2.41
3954 5231 3.428180 CCATGTCGAGGTCTGAGTACAAG 60.428 52.174 0.00 0.00 0.00 3.16
3955 5232 2.860009 TGTCGAGGTCTGAGTACAAGT 58.140 47.619 0.00 0.00 0.00 3.16
3956 5233 4.011966 TGTCGAGGTCTGAGTACAAGTA 57.988 45.455 0.00 0.00 0.00 2.24
3957 5234 3.750130 TGTCGAGGTCTGAGTACAAGTAC 59.250 47.826 2.18 2.18 36.35 2.73
3958 5235 3.750130 GTCGAGGTCTGAGTACAAGTACA 59.250 47.826 12.43 0.00 38.48 2.90
3960 5237 3.752222 CGAGGTCTGAGTACAAGTACAGT 59.248 47.826 12.43 0.00 38.48 3.55
3961 5238 4.215827 CGAGGTCTGAGTACAAGTACAGTT 59.784 45.833 12.43 0.00 38.48 3.16
3962 5239 5.278364 CGAGGTCTGAGTACAAGTACAGTTT 60.278 44.000 12.43 0.00 38.48 2.66
3963 5240 6.481434 AGGTCTGAGTACAAGTACAGTTTT 57.519 37.500 12.43 0.00 38.48 2.43
3964 5241 6.885922 AGGTCTGAGTACAAGTACAGTTTTT 58.114 36.000 12.43 0.00 38.48 1.94
3965 5242 6.761714 AGGTCTGAGTACAAGTACAGTTTTTG 59.238 38.462 12.43 0.00 38.48 2.44
3966 5243 6.419771 GTCTGAGTACAAGTACAGTTTTTGC 58.580 40.000 12.43 0.00 38.48 3.68
3967 5244 5.526111 TCTGAGTACAAGTACAGTTTTTGCC 59.474 40.000 12.43 0.00 38.48 4.52
3968 5245 5.433526 TGAGTACAAGTACAGTTTTTGCCT 58.566 37.500 12.43 0.00 38.48 4.75
3970 5247 6.704493 TGAGTACAAGTACAGTTTTTGCCTAG 59.296 38.462 12.43 0.00 38.48 3.02
3972 5249 7.052248 AGTACAAGTACAGTTTTTGCCTAGTT 58.948 34.615 12.43 0.00 38.48 2.24
3973 5250 6.769134 ACAAGTACAGTTTTTGCCTAGTTT 57.231 33.333 0.00 0.00 0.00 2.66
3974 5251 7.868906 ACAAGTACAGTTTTTGCCTAGTTTA 57.131 32.000 0.00 0.00 0.00 2.01
3975 5252 8.283699 ACAAGTACAGTTTTTGCCTAGTTTAA 57.716 30.769 0.00 0.00 0.00 1.52
3976 5253 8.186163 ACAAGTACAGTTTTTGCCTAGTTTAAC 58.814 33.333 0.00 0.00 0.00 2.01
3977 5254 8.403236 CAAGTACAGTTTTTGCCTAGTTTAACT 58.597 33.333 2.32 2.32 0.00 2.24
3978 5255 9.617523 AAGTACAGTTTTTGCCTAGTTTAACTA 57.382 29.630 4.66 4.66 0.00 2.24
3980 5257 9.049523 GTACAGTTTTTGCCTAGTTTAACTAGT 57.950 33.333 24.92 10.25 45.12 2.57
3982 5259 9.049523 ACAGTTTTTGCCTAGTTTAACTAGTAC 57.950 33.333 24.92 18.48 45.12 2.73
3984 5261 9.788889 AGTTTTTGCCTAGTTTAACTAGTACAT 57.211 29.630 24.92 9.36 45.12 2.29
3987 5264 5.667466 TGCCTAGTTTAACTAGTACATGGC 58.333 41.667 24.92 21.36 45.12 4.40
3988 5265 5.055144 GCCTAGTTTAACTAGTACATGGCC 58.945 45.833 24.92 0.00 45.12 5.36
3989 5266 5.608449 CCTAGTTTAACTAGTACATGGCCC 58.392 45.833 24.92 0.00 45.12 5.80
3990 5267 4.498894 AGTTTAACTAGTACATGGCCCC 57.501 45.455 0.00 0.00 0.00 5.80
3992 5269 4.080526 AGTTTAACTAGTACATGGCCCCTG 60.081 45.833 0.00 0.00 0.00 4.45
3993 5270 1.213296 AACTAGTACATGGCCCCTGG 58.787 55.000 0.00 0.00 0.00 4.45
3994 5271 0.044244 ACTAGTACATGGCCCCTGGT 59.956 55.000 0.00 0.00 0.00 4.00
3995 5272 1.213296 CTAGTACATGGCCCCTGGTT 58.787 55.000 0.00 0.00 0.00 3.67
3996 5273 1.564348 CTAGTACATGGCCCCTGGTTT 59.436 52.381 0.00 0.00 0.00 3.27
3997 5274 0.783850 AGTACATGGCCCCTGGTTTT 59.216 50.000 0.00 0.00 0.00 2.43
3998 5275 1.149077 AGTACATGGCCCCTGGTTTTT 59.851 47.619 0.00 0.00 0.00 1.94
3999 5276 1.548719 GTACATGGCCCCTGGTTTTTC 59.451 52.381 0.00 0.00 0.00 2.29
4000 5277 0.190815 ACATGGCCCCTGGTTTTTCT 59.809 50.000 0.00 0.00 0.00 2.52
4001 5278 0.609662 CATGGCCCCTGGTTTTTCTG 59.390 55.000 0.00 0.00 0.00 3.02
4005 5282 0.178961 GCCCCTGGTTTTTCTGACCT 60.179 55.000 0.00 0.00 38.04 3.85
4006 5283 1.757764 GCCCCTGGTTTTTCTGACCTT 60.758 52.381 0.00 0.00 38.04 3.50
4008 5285 2.158460 CCCCTGGTTTTTCTGACCTTCT 60.158 50.000 0.00 0.00 38.04 2.85
4009 5286 2.887152 CCCTGGTTTTTCTGACCTTCTG 59.113 50.000 0.00 0.00 38.04 3.02
4011 5288 3.217626 CTGGTTTTTCTGACCTTCTGCT 58.782 45.455 0.00 0.00 38.04 4.24
4013 5290 2.294512 GGTTTTTCTGACCTTCTGCTGG 59.705 50.000 0.00 0.00 34.27 4.85
4014 5291 1.609208 TTTTCTGACCTTCTGCTGGC 58.391 50.000 0.00 0.00 0.00 4.85
4016 5293 0.322975 TTCTGACCTTCTGCTGGCTC 59.677 55.000 0.00 0.00 0.00 4.70
4017 5294 0.833409 TCTGACCTTCTGCTGGCTCA 60.833 55.000 0.00 0.00 0.00 4.26
4031 5308 4.025015 CTGGCTCAGCAATGTGATAAAC 57.975 45.455 0.00 0.00 0.00 2.01
4032 5309 3.419943 TGGCTCAGCAATGTGATAAACA 58.580 40.909 0.00 0.00 44.79 2.83
4044 5321 1.742831 TGATAAACACATGGCTTCCGC 59.257 47.619 0.00 0.00 0.00 5.54
4060 5337 2.185867 GCCGTGCGTGGGAGAATA 59.814 61.111 0.00 0.00 0.00 1.75
4062 5339 0.032952 GCCGTGCGTGGGAGAATATA 59.967 55.000 0.00 0.00 0.00 0.86
4063 5340 1.337823 GCCGTGCGTGGGAGAATATAT 60.338 52.381 0.00 0.00 0.00 0.86
4066 5343 4.112634 CCGTGCGTGGGAGAATATATATG 58.887 47.826 0.00 0.00 0.00 1.78
4067 5344 4.381612 CCGTGCGTGGGAGAATATATATGT 60.382 45.833 0.00 0.00 0.00 2.29
4068 5345 5.168569 CGTGCGTGGGAGAATATATATGTT 58.831 41.667 0.00 0.00 0.00 2.71
4069 5346 5.288712 CGTGCGTGGGAGAATATATATGTTC 59.711 44.000 12.88 12.88 0.00 3.18
4071 5348 5.483937 TGCGTGGGAGAATATATATGTTCCT 59.516 40.000 16.14 6.32 0.00 3.36
4073 5350 7.179516 TGCGTGGGAGAATATATATGTTCCTAA 59.820 37.037 16.14 9.69 0.00 2.69
4075 5352 8.750298 CGTGGGAGAATATATATGTTCCTAACT 58.250 37.037 16.14 0.67 0.00 2.24
4076 5353 9.877178 GTGGGAGAATATATATGTTCCTAACTG 57.123 37.037 16.14 0.00 0.00 3.16
4077 5354 9.046846 TGGGAGAATATATATGTTCCTAACTGG 57.953 37.037 16.14 0.00 37.10 4.00
4078 5355 9.268282 GGGAGAATATATATGTTCCTAACTGGA 57.732 37.037 16.14 0.00 44.51 3.86
4084 5361 7.914427 ATATATGTTCCTAACTGGACTCACA 57.086 36.000 0.00 0.00 46.14 3.58
4085 5362 6.814954 ATATGTTCCTAACTGGACTCACAT 57.185 37.500 0.00 0.00 46.14 3.21
4088 5365 4.346709 TGTTCCTAACTGGACTCACATTCA 59.653 41.667 0.00 0.00 46.14 2.57
4089 5366 4.808414 TCCTAACTGGACTCACATTCAG 57.192 45.455 0.00 0.00 40.56 3.02
4090 5367 3.055819 TCCTAACTGGACTCACATTCAGC 60.056 47.826 0.00 0.00 40.56 4.26
4091 5368 3.055530 CCTAACTGGACTCACATTCAGCT 60.056 47.826 0.00 0.00 38.35 4.24
4092 5369 3.498774 AACTGGACTCACATTCAGCTT 57.501 42.857 0.00 0.00 0.00 3.74
4093 5370 3.498774 ACTGGACTCACATTCAGCTTT 57.501 42.857 0.00 0.00 0.00 3.51
4094 5371 4.623932 ACTGGACTCACATTCAGCTTTA 57.376 40.909 0.00 0.00 0.00 1.85
4095 5372 4.973168 ACTGGACTCACATTCAGCTTTAA 58.027 39.130 0.00 0.00 0.00 1.52
4096 5373 5.376625 ACTGGACTCACATTCAGCTTTAAA 58.623 37.500 0.00 0.00 0.00 1.52
4097 5374 5.827797 ACTGGACTCACATTCAGCTTTAAAA 59.172 36.000 0.00 0.00 0.00 1.52
4099 5376 6.680810 TGGACTCACATTCAGCTTTAAAATG 58.319 36.000 6.41 6.41 36.64 2.32
4100 5377 6.489700 TGGACTCACATTCAGCTTTAAAATGA 59.510 34.615 12.42 2.08 35.03 2.57
4101 5378 7.177216 TGGACTCACATTCAGCTTTAAAATGAT 59.823 33.333 12.42 0.00 35.03 2.45
4103 5380 9.415544 GACTCACATTCAGCTTTAAAATGATTT 57.584 29.630 12.42 0.00 35.03 2.17
4104 5381 9.199982 ACTCACATTCAGCTTTAAAATGATTTG 57.800 29.630 12.42 7.48 35.03 2.32
4120 5397 9.798994 AAAATGATTTGATAAAGCTGAGACATC 57.201 29.630 0.00 0.00 0.00 3.06
4121 5398 8.515695 AATGATTTGATAAAGCTGAGACATCA 57.484 30.769 0.00 0.00 0.00 3.07
4123 5400 8.339344 TGATTTGATAAAGCTGAGACATCAAA 57.661 30.769 16.86 16.86 44.91 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 9.533831 AGTCATGAAATTTGACCCTTATTTAGT 57.466 29.630 0.00 0.00 43.62 2.24
310 313 5.330295 CAGTACTTTGTTACTATCGAGCGT 58.670 41.667 0.00 0.00 0.00 5.07
312 315 5.341617 AGCAGTACTTTGTTACTATCGAGC 58.658 41.667 0.00 0.00 0.00 5.03
365 368 6.747659 CACGCTATGTTTTAAGTGCTTTTT 57.252 33.333 0.00 0.00 0.00 1.94
401 404 1.207329 GGAGTTATGAACGCTCAGGGT 59.793 52.381 0.00 0.00 34.23 4.34
415 418 6.374417 AGGCTCTTTTCAACATAGGAGTTA 57.626 37.500 0.00 0.00 0.00 2.24
593 597 2.614057 GCATGGGAGTTTGATAGGAACG 59.386 50.000 0.00 0.00 32.38 3.95
688 693 2.163010 GACATGCCAATTGACTGTGGAG 59.837 50.000 7.12 0.00 37.03 3.86
753 763 8.100791 AGTATTAACTTTGCAACTCACCATAGA 58.899 33.333 0.00 0.00 29.00 1.98
895 911 2.523440 CTGGGCCGGTTATACAGGA 58.477 57.895 3.48 0.00 35.32 3.86
906 922 1.843376 AGGTATCATCCCTGGGCCG 60.843 63.158 8.22 0.79 0.00 6.13
915 931 3.753294 ACGTTGGGATCAGGTATCATC 57.247 47.619 0.00 0.00 36.20 2.92
916 932 4.199310 CAAACGTTGGGATCAGGTATCAT 58.801 43.478 0.00 0.00 36.20 2.45
917 933 3.605634 CAAACGTTGGGATCAGGTATCA 58.394 45.455 0.00 0.00 36.20 2.15
1793 1828 2.859422 AGGAACTCCAGGACGGGA 59.141 61.111 0.00 0.00 38.89 5.14
2327 2743 2.779755 TTACATGGACATGGAGCGTT 57.220 45.000 15.94 0.00 42.91 4.84
2973 3671 1.153229 GGGACGGCTTGGTGGTATC 60.153 63.158 0.00 0.00 0.00 2.24
3006 3705 2.935201 GGCTGAAGAACTAGCAGTCATG 59.065 50.000 0.00 0.00 41.63 3.07
3007 3706 2.568956 TGGCTGAAGAACTAGCAGTCAT 59.431 45.455 0.00 0.00 39.13 3.06
3009 3708 2.751166 TGGCTGAAGAACTAGCAGTC 57.249 50.000 0.00 0.00 41.63 3.51
3174 4412 5.346551 ACAGCAAGGTAAAACGAAAAACAAC 59.653 36.000 0.00 0.00 0.00 3.32
3196 4436 0.467844 AGCCCTGCACACAATTGACA 60.468 50.000 13.59 3.93 0.00 3.58
3232 4485 6.322712 AGAAAGGCCACATTAGACTACTAGAG 59.677 42.308 5.01 0.00 0.00 2.43
3234 4487 6.276847 CAGAAAGGCCACATTAGACTACTAG 58.723 44.000 5.01 0.00 0.00 2.57
3235 4488 5.128827 CCAGAAAGGCCACATTAGACTACTA 59.871 44.000 5.01 0.00 0.00 1.82
3236 4489 4.080863 CCAGAAAGGCCACATTAGACTACT 60.081 45.833 5.01 0.00 0.00 2.57
3237 4490 4.192317 CCAGAAAGGCCACATTAGACTAC 58.808 47.826 5.01 0.00 0.00 2.73
3238 4491 3.844211 ACCAGAAAGGCCACATTAGACTA 59.156 43.478 5.01 0.00 43.14 2.59
3239 4492 2.644798 ACCAGAAAGGCCACATTAGACT 59.355 45.455 5.01 0.00 43.14 3.24
3317 4570 1.308998 ACCGCTAATGCATACCAAGC 58.691 50.000 0.00 6.41 39.64 4.01
3436 4711 3.865164 CGTCTATCAGCATGCACACTTAA 59.135 43.478 21.98 0.00 34.76 1.85
3514 4789 8.030106 TGCAATAATAGTTTAACCCGAAAAAGG 58.970 33.333 0.00 0.00 0.00 3.11
3545 4822 0.958876 TGTCTCTGGCAGCAGCAATG 60.959 55.000 10.34 0.00 44.61 2.82
3677 4954 5.793952 CGAAGCAGAGTGAGATTTCAATTTG 59.206 40.000 0.50 0.50 36.80 2.32
3705 4982 4.442706 GAAGCATTCTACGAAGGGAATCA 58.557 43.478 0.00 0.00 43.23 2.57
3732 5009 9.624373 CCCTGGAATTCAGATGGATATATAAAG 57.376 37.037 7.93 0.00 46.18 1.85
3762 5039 7.912719 AGAAGAAGACTATGGTAGCTTCTTTT 58.087 34.615 20.00 14.71 46.60 2.27
3763 5040 7.489239 AGAAGAAGACTATGGTAGCTTCTTT 57.511 36.000 20.00 11.55 46.60 2.52
3765 5042 7.398904 AGAAAGAAGAAGACTATGGTAGCTTCT 59.601 37.037 12.11 12.11 43.97 2.85
3766 5043 7.552459 AGAAAGAAGAAGACTATGGTAGCTTC 58.448 38.462 0.00 8.98 38.28 3.86
3767 5044 7.398904 AGAGAAAGAAGAAGACTATGGTAGCTT 59.601 37.037 0.00 0.00 0.00 3.74
3769 5046 6.978080 CAGAGAAAGAAGAAGACTATGGTAGC 59.022 42.308 0.00 0.00 0.00 3.58
3770 5047 7.340743 TCCAGAGAAAGAAGAAGACTATGGTAG 59.659 40.741 0.00 0.00 39.81 3.18
3771 5048 7.182760 TCCAGAGAAAGAAGAAGACTATGGTA 58.817 38.462 0.00 0.00 39.81 3.25
3772 5049 6.019748 TCCAGAGAAAGAAGAAGACTATGGT 58.980 40.000 0.00 0.00 39.81 3.55
3773 5050 6.537453 TCCAGAGAAAGAAGAAGACTATGG 57.463 41.667 0.00 0.00 40.09 2.74
3774 5051 6.534793 GCTTCCAGAGAAAGAAGAAGACTATG 59.465 42.308 4.02 0.00 41.69 2.23
3775 5052 6.212388 TGCTTCCAGAGAAAGAAGAAGACTAT 59.788 38.462 4.02 0.00 41.69 2.12
3776 5053 5.540337 TGCTTCCAGAGAAAGAAGAAGACTA 59.460 40.000 4.02 0.00 41.69 2.59
3777 5054 4.346418 TGCTTCCAGAGAAAGAAGAAGACT 59.654 41.667 4.02 0.00 41.69 3.24
3778 5055 4.450757 GTGCTTCCAGAGAAAGAAGAAGAC 59.549 45.833 4.02 0.00 41.69 3.01
3779 5056 4.101585 TGTGCTTCCAGAGAAAGAAGAAGA 59.898 41.667 4.02 0.00 41.69 2.87
3780 5057 4.384056 TGTGCTTCCAGAGAAAGAAGAAG 58.616 43.478 4.02 0.00 41.69 2.85
3781 5058 4.422073 TGTGCTTCCAGAGAAAGAAGAA 57.578 40.909 4.02 0.00 41.69 2.52
3782 5059 4.130118 GTTGTGCTTCCAGAGAAAGAAGA 58.870 43.478 4.02 0.00 41.69 2.87
3783 5060 3.879295 TGTTGTGCTTCCAGAGAAAGAAG 59.121 43.478 0.00 0.00 41.99 2.85
3784 5061 3.627577 GTGTTGTGCTTCCAGAGAAAGAA 59.372 43.478 0.00 0.00 0.00 2.52
3786 5063 2.032549 CGTGTTGTGCTTCCAGAGAAAG 60.033 50.000 0.00 0.00 0.00 2.62
3787 5064 1.939934 CGTGTTGTGCTTCCAGAGAAA 59.060 47.619 0.00 0.00 0.00 2.52
3788 5065 1.134521 ACGTGTTGTGCTTCCAGAGAA 60.135 47.619 0.00 0.00 0.00 2.87
3789 5066 0.464036 ACGTGTTGTGCTTCCAGAGA 59.536 50.000 0.00 0.00 0.00 3.10
3790 5067 0.861837 GACGTGTTGTGCTTCCAGAG 59.138 55.000 0.00 0.00 0.00 3.35
3791 5068 0.176910 TGACGTGTTGTGCTTCCAGA 59.823 50.000 0.00 0.00 0.00 3.86
3792 5069 0.583438 CTGACGTGTTGTGCTTCCAG 59.417 55.000 0.00 0.00 0.00 3.86
3793 5070 0.176910 TCTGACGTGTTGTGCTTCCA 59.823 50.000 0.00 0.00 0.00 3.53
3794 5071 0.582005 GTCTGACGTGTTGTGCTTCC 59.418 55.000 0.00 0.00 0.00 3.46
3796 5073 1.867233 GATGTCTGACGTGTTGTGCTT 59.133 47.619 7.35 0.00 0.00 3.91
3799 5076 3.320626 AGATGATGTCTGACGTGTTGTG 58.679 45.455 7.35 0.00 35.31 3.33
3800 5077 3.667497 AGATGATGTCTGACGTGTTGT 57.333 42.857 7.35 0.00 35.31 3.32
3810 5087 4.349342 GGTAAAGGGGATCAGATGATGTCT 59.651 45.833 0.00 0.00 37.80 3.41
3811 5088 4.505742 GGGTAAAGGGGATCAGATGATGTC 60.506 50.000 0.00 0.00 34.37 3.06
3812 5089 3.395941 GGGTAAAGGGGATCAGATGATGT 59.604 47.826 0.00 0.00 34.37 3.06
3813 5090 3.395607 TGGGTAAAGGGGATCAGATGATG 59.604 47.826 0.00 0.00 34.37 3.07
3814 5091 3.680169 TGGGTAAAGGGGATCAGATGAT 58.320 45.455 0.00 0.00 37.51 2.45
3815 5092 3.144068 TGGGTAAAGGGGATCAGATGA 57.856 47.619 0.00 0.00 0.00 2.92
3816 5093 3.245052 GGATGGGTAAAGGGGATCAGATG 60.245 52.174 0.00 0.00 0.00 2.90
3817 5094 2.989571 GGATGGGTAAAGGGGATCAGAT 59.010 50.000 0.00 0.00 0.00 2.90
3818 5095 2.294195 TGGATGGGTAAAGGGGATCAGA 60.294 50.000 0.00 0.00 0.00 3.27
3819 5096 2.135189 TGGATGGGTAAAGGGGATCAG 58.865 52.381 0.00 0.00 0.00 2.90
3821 5098 2.225117 CCATGGATGGGTAAAGGGGATC 60.225 54.545 5.56 0.00 44.31 3.36
3822 5099 1.788915 CCATGGATGGGTAAAGGGGAT 59.211 52.381 5.56 0.00 44.31 3.85
3823 5100 1.231018 CCATGGATGGGTAAAGGGGA 58.769 55.000 5.56 0.00 44.31 4.81
3834 5111 9.234827 TGTAGAATTATGCTAATTCCATGGATG 57.765 33.333 17.06 7.67 37.36 3.51
3835 5112 9.812347 TTGTAGAATTATGCTAATTCCATGGAT 57.188 29.630 17.06 3.82 37.36 3.41
3836 5113 9.639563 TTTGTAGAATTATGCTAATTCCATGGA 57.360 29.630 11.44 11.44 37.36 3.41
3839 5116 9.420118 TGGTTTGTAGAATTATGCTAATTCCAT 57.580 29.630 17.64 8.85 37.36 3.41
3840 5117 8.815565 TGGTTTGTAGAATTATGCTAATTCCA 57.184 30.769 17.64 11.09 37.36 3.53
3841 5118 7.862873 GCTGGTTTGTAGAATTATGCTAATTCC 59.137 37.037 17.64 9.49 37.36 3.01
3842 5119 8.405531 TGCTGGTTTGTAGAATTATGCTAATTC 58.594 33.333 15.28 15.28 37.01 2.17
3844 5121 7.880160 TGCTGGTTTGTAGAATTATGCTAAT 57.120 32.000 0.00 0.00 0.00 1.73
3846 5123 7.227314 CAGATGCTGGTTTGTAGAATTATGCTA 59.773 37.037 0.00 0.00 0.00 3.49
3847 5124 6.039047 CAGATGCTGGTTTGTAGAATTATGCT 59.961 38.462 0.00 0.00 0.00 3.79
3848 5125 6.038603 TCAGATGCTGGTTTGTAGAATTATGC 59.961 38.462 0.00 0.00 31.51 3.14
3849 5126 7.558161 TCAGATGCTGGTTTGTAGAATTATG 57.442 36.000 0.00 0.00 31.51 1.90
3850 5127 7.284034 CCTTCAGATGCTGGTTTGTAGAATTAT 59.716 37.037 0.00 0.00 31.51 1.28
3851 5128 6.599244 CCTTCAGATGCTGGTTTGTAGAATTA 59.401 38.462 0.00 0.00 31.51 1.40
3852 5129 5.416952 CCTTCAGATGCTGGTTTGTAGAATT 59.583 40.000 0.00 0.00 31.51 2.17
3853 5130 4.946157 CCTTCAGATGCTGGTTTGTAGAAT 59.054 41.667 0.00 0.00 31.51 2.40
3854 5131 4.202461 ACCTTCAGATGCTGGTTTGTAGAA 60.202 41.667 0.00 0.00 31.51 2.10
3855 5132 3.327757 ACCTTCAGATGCTGGTTTGTAGA 59.672 43.478 0.00 0.00 31.51 2.59
3856 5133 3.679389 ACCTTCAGATGCTGGTTTGTAG 58.321 45.455 0.00 0.00 31.51 2.74
3857 5134 3.788227 ACCTTCAGATGCTGGTTTGTA 57.212 42.857 0.00 0.00 31.51 2.41
3859 5136 2.608752 GCAACCTTCAGATGCTGGTTTG 60.609 50.000 6.59 0.00 40.39 2.93
3860 5137 1.615392 GCAACCTTCAGATGCTGGTTT 59.385 47.619 6.59 0.00 40.39 3.27
3861 5138 1.251251 GCAACCTTCAGATGCTGGTT 58.749 50.000 0.00 0.00 42.78 3.67
3862 5139 2.952714 GCAACCTTCAGATGCTGGT 58.047 52.632 0.00 0.00 37.12 4.00
3867 5144 5.215160 GTGTTTAACAGCAACCTTCAGATG 58.785 41.667 0.00 0.00 0.00 2.90
3868 5145 4.887071 TGTGTTTAACAGCAACCTTCAGAT 59.113 37.500 0.00 0.00 33.78 2.90
3871 5148 5.392767 TTTGTGTTTAACAGCAACCTTCA 57.607 34.783 0.00 0.00 40.74 3.02
3872 5149 6.273071 AGATTTGTGTTTAACAGCAACCTTC 58.727 36.000 0.00 4.33 40.74 3.46
3873 5150 6.220726 AGATTTGTGTTTAACAGCAACCTT 57.779 33.333 0.00 0.00 40.74 3.50
3874 5151 5.852282 AGATTTGTGTTTAACAGCAACCT 57.148 34.783 0.00 4.08 40.74 3.50
3875 5152 6.039616 TCAAGATTTGTGTTTAACAGCAACC 58.960 36.000 0.00 2.15 40.74 3.77
3877 5154 6.255453 GCTTCAAGATTTGTGTTTAACAGCAA 59.745 34.615 0.00 3.75 40.74 3.91
3879 5156 5.175673 GGCTTCAAGATTTGTGTTTAACAGC 59.824 40.000 0.00 0.00 40.74 4.40
3881 5158 6.214191 TGGCTTCAAGATTTGTGTTTAACA 57.786 33.333 0.00 0.00 36.85 2.41
3895 5172 2.490903 CCATTCTGACCTTGGCTTCAAG 59.509 50.000 0.00 0.00 45.51 3.02
3896 5173 2.108075 TCCATTCTGACCTTGGCTTCAA 59.892 45.455 0.00 0.00 0.00 2.69
3897 5174 1.704628 TCCATTCTGACCTTGGCTTCA 59.295 47.619 0.00 0.00 0.00 3.02
3898 5175 2.087646 GTCCATTCTGACCTTGGCTTC 58.912 52.381 0.00 0.00 0.00 3.86
3899 5176 1.707427 AGTCCATTCTGACCTTGGCTT 59.293 47.619 0.00 0.00 35.83 4.35
3900 5177 1.280421 GAGTCCATTCTGACCTTGGCT 59.720 52.381 0.00 0.00 35.83 4.75
3901 5178 1.743996 GAGTCCATTCTGACCTTGGC 58.256 55.000 0.00 0.00 35.83 4.52
3903 5180 1.550524 TCCGAGTCCATTCTGACCTTG 59.449 52.381 0.00 0.00 35.83 3.61
3904 5181 1.938585 TCCGAGTCCATTCTGACCTT 58.061 50.000 0.00 0.00 35.83 3.50
3905 5182 1.827969 CTTCCGAGTCCATTCTGACCT 59.172 52.381 0.00 0.00 35.83 3.85
3906 5183 1.550976 ACTTCCGAGTCCATTCTGACC 59.449 52.381 0.00 0.00 35.83 4.02
3907 5184 2.996621 CAACTTCCGAGTCCATTCTGAC 59.003 50.000 0.00 0.00 34.21 3.51
3908 5185 2.612972 GCAACTTCCGAGTCCATTCTGA 60.613 50.000 0.00 0.00 34.21 3.27
3910 5187 1.347707 TGCAACTTCCGAGTCCATTCT 59.652 47.619 0.00 0.00 34.21 2.40
3911 5188 1.808411 TGCAACTTCCGAGTCCATTC 58.192 50.000 0.00 0.00 34.21 2.67
3912 5189 2.359900 GATGCAACTTCCGAGTCCATT 58.640 47.619 0.00 0.00 34.21 3.16
3913 5190 1.407437 GGATGCAACTTCCGAGTCCAT 60.407 52.381 0.00 0.00 34.21 3.41
3915 5192 0.036388 TGGATGCAACTTCCGAGTCC 60.036 55.000 0.00 0.00 35.94 3.85
3916 5193 1.667724 CATGGATGCAACTTCCGAGTC 59.332 52.381 0.00 0.00 35.94 3.36
3917 5194 1.003580 ACATGGATGCAACTTCCGAGT 59.996 47.619 0.00 0.00 35.94 4.18
3918 5195 1.667724 GACATGGATGCAACTTCCGAG 59.332 52.381 0.00 0.00 35.94 4.63
3919 5196 1.737838 GACATGGATGCAACTTCCGA 58.262 50.000 0.00 0.00 35.94 4.55
3920 5197 0.374758 CGACATGGATGCAACTTCCG 59.625 55.000 0.00 0.00 35.94 4.30
3921 5198 1.667724 CTCGACATGGATGCAACTTCC 59.332 52.381 0.00 0.00 0.00 3.46
3923 5200 1.003580 ACCTCGACATGGATGCAACTT 59.996 47.619 0.00 0.00 0.00 2.66
3924 5201 0.615331 ACCTCGACATGGATGCAACT 59.385 50.000 0.00 0.00 0.00 3.16
3925 5202 1.009829 GACCTCGACATGGATGCAAC 58.990 55.000 0.00 0.00 0.00 4.17
3927 5204 0.176449 CAGACCTCGACATGGATGCA 59.824 55.000 0.00 0.00 0.00 3.96
3929 5206 1.753649 ACTCAGACCTCGACATGGATG 59.246 52.381 0.00 0.00 0.00 3.51
3931 5208 2.290705 TGTACTCAGACCTCGACATGGA 60.291 50.000 0.00 0.00 0.00 3.41
3932 5209 2.092323 TGTACTCAGACCTCGACATGG 58.908 52.381 0.00 0.00 0.00 3.66
3933 5210 3.191581 ACTTGTACTCAGACCTCGACATG 59.808 47.826 0.00 0.00 0.00 3.21
3934 5211 3.422796 ACTTGTACTCAGACCTCGACAT 58.577 45.455 0.00 0.00 0.00 3.06
3935 5212 2.860009 ACTTGTACTCAGACCTCGACA 58.140 47.619 0.00 0.00 0.00 4.35
3936 5213 3.750130 TGTACTTGTACTCAGACCTCGAC 59.250 47.826 11.53 0.00 0.00 4.20
3937 5214 4.001652 CTGTACTTGTACTCAGACCTCGA 58.998 47.826 11.53 0.00 0.00 4.04
3938 5215 3.752222 ACTGTACTTGTACTCAGACCTCG 59.248 47.826 11.53 0.00 0.00 4.63
3939 5216 5.708877 AACTGTACTTGTACTCAGACCTC 57.291 43.478 11.53 0.00 0.00 3.85
3940 5217 6.481434 AAAACTGTACTTGTACTCAGACCT 57.519 37.500 11.53 0.00 0.00 3.85
3941 5218 6.511282 GCAAAAACTGTACTTGTACTCAGACC 60.511 42.308 11.53 0.00 0.00 3.85
3942 5219 6.419771 GCAAAAACTGTACTTGTACTCAGAC 58.580 40.000 11.53 0.00 0.00 3.51
3943 5220 5.526111 GGCAAAAACTGTACTTGTACTCAGA 59.474 40.000 11.53 0.00 0.00 3.27
3944 5221 5.527582 AGGCAAAAACTGTACTTGTACTCAG 59.472 40.000 11.53 5.06 0.00 3.35
3945 5222 5.433526 AGGCAAAAACTGTACTTGTACTCA 58.566 37.500 11.53 0.00 0.00 3.41
3946 5223 6.704937 ACTAGGCAAAAACTGTACTTGTACTC 59.295 38.462 11.53 0.00 0.00 2.59
3947 5224 6.589135 ACTAGGCAAAAACTGTACTTGTACT 58.411 36.000 11.53 0.00 0.00 2.73
3948 5225 6.856135 ACTAGGCAAAAACTGTACTTGTAC 57.144 37.500 4.14 4.14 0.00 2.90
3949 5226 7.868906 AAACTAGGCAAAAACTGTACTTGTA 57.131 32.000 0.00 0.00 0.00 2.41
3950 5227 6.769134 AAACTAGGCAAAAACTGTACTTGT 57.231 33.333 0.00 0.00 0.00 3.16
3951 5228 8.403236 AGTTAAACTAGGCAAAAACTGTACTTG 58.597 33.333 0.00 0.00 0.00 3.16
3952 5229 8.515695 AGTTAAACTAGGCAAAAACTGTACTT 57.484 30.769 0.00 0.00 0.00 2.24
3953 5230 9.269453 CTAGTTAAACTAGGCAAAAACTGTACT 57.731 33.333 0.00 0.00 43.37 2.73
3968 5245 5.129815 CAGGGGCCATGTACTAGTTAAACTA 59.870 44.000 10.66 0.00 0.00 2.24
3970 5247 4.196971 CAGGGGCCATGTACTAGTTAAAC 58.803 47.826 10.66 0.00 0.00 2.01
3972 5249 2.775384 CCAGGGGCCATGTACTAGTTAA 59.225 50.000 18.02 0.00 0.00 2.01
3973 5250 2.293318 ACCAGGGGCCATGTACTAGTTA 60.293 50.000 18.02 0.00 0.00 2.24
3974 5251 1.213296 CCAGGGGCCATGTACTAGTT 58.787 55.000 18.02 0.00 0.00 2.24
3975 5252 0.044244 ACCAGGGGCCATGTACTAGT 59.956 55.000 18.02 4.22 0.00 2.57
3976 5253 1.213296 AACCAGGGGCCATGTACTAG 58.787 55.000 18.02 3.52 0.00 2.57
3977 5254 1.676248 AAACCAGGGGCCATGTACTA 58.324 50.000 18.02 0.00 0.00 1.82
3978 5255 0.783850 AAAACCAGGGGCCATGTACT 59.216 50.000 18.02 0.00 0.00 2.73
3980 5257 1.431243 AGAAAAACCAGGGGCCATGTA 59.569 47.619 18.02 0.00 0.00 2.29
3981 5258 0.190815 AGAAAAACCAGGGGCCATGT 59.809 50.000 18.02 2.28 0.00 3.21
3982 5259 0.609662 CAGAAAAACCAGGGGCCATG 59.390 55.000 12.10 12.10 0.00 3.66
3984 5261 0.469144 GTCAGAAAAACCAGGGGCCA 60.469 55.000 4.39 0.00 0.00 5.36
3987 5264 2.158460 AGAAGGTCAGAAAAACCAGGGG 60.158 50.000 0.00 0.00 39.39 4.79
3988 5265 2.887152 CAGAAGGTCAGAAAAACCAGGG 59.113 50.000 0.00 0.00 39.39 4.45
3989 5266 2.294512 GCAGAAGGTCAGAAAAACCAGG 59.705 50.000 0.00 0.00 39.39 4.45
3990 5267 3.004106 CAGCAGAAGGTCAGAAAAACCAG 59.996 47.826 0.00 0.00 39.39 4.00
3992 5269 2.294512 CCAGCAGAAGGTCAGAAAAACC 59.705 50.000 0.00 0.00 37.03 3.27
3993 5270 2.287849 GCCAGCAGAAGGTCAGAAAAAC 60.288 50.000 0.00 0.00 0.00 2.43
3994 5271 1.956477 GCCAGCAGAAGGTCAGAAAAA 59.044 47.619 0.00 0.00 0.00 1.94
3995 5272 1.143684 AGCCAGCAGAAGGTCAGAAAA 59.856 47.619 0.00 0.00 0.00 2.29
3996 5273 0.767375 AGCCAGCAGAAGGTCAGAAA 59.233 50.000 0.00 0.00 0.00 2.52
3997 5274 0.322975 GAGCCAGCAGAAGGTCAGAA 59.677 55.000 0.00 0.00 0.00 3.02
3998 5275 0.833409 TGAGCCAGCAGAAGGTCAGA 60.833 55.000 0.00 0.00 35.69 3.27
3999 5276 1.675801 TGAGCCAGCAGAAGGTCAG 59.324 57.895 0.00 0.00 35.69 3.51
4000 5277 1.675801 CTGAGCCAGCAGAAGGTCA 59.324 57.895 0.00 0.00 38.14 4.02
4001 5278 4.613929 CTGAGCCAGCAGAAGGTC 57.386 61.111 0.00 0.00 38.14 3.85
4011 5288 3.191162 GTGTTTATCACATTGCTGAGCCA 59.809 43.478 0.23 0.00 45.51 4.75
4023 5300 3.405170 CGGAAGCCATGTGTTTATCAC 57.595 47.619 0.00 0.00 46.31 3.06
4043 5320 0.032952 TATATTCTCCCACGCACGGC 59.967 55.000 0.00 0.00 0.00 5.68
4044 5321 2.743636 ATATATTCTCCCACGCACGG 57.256 50.000 0.00 0.00 0.00 4.94
4045 5322 4.744570 ACATATATATTCTCCCACGCACG 58.255 43.478 0.00 0.00 0.00 5.34
4046 5323 5.581085 GGAACATATATATTCTCCCACGCAC 59.419 44.000 3.84 0.00 0.00 5.34
4048 5325 5.978814 AGGAACATATATATTCTCCCACGC 58.021 41.667 13.13 0.00 0.00 5.34
4049 5326 8.750298 AGTTAGGAACATATATATTCTCCCACG 58.250 37.037 13.13 0.00 0.00 4.94
4050 5327 9.877178 CAGTTAGGAACATATATATTCTCCCAC 57.123 37.037 13.13 11.13 0.00 4.61
4051 5328 9.046846 CCAGTTAGGAACATATATATTCTCCCA 57.953 37.037 13.13 1.74 41.22 4.37
4052 5329 9.268282 TCCAGTTAGGAACATATATATTCTCCC 57.732 37.037 13.13 4.87 45.65 4.30
4068 5345 3.055819 GCTGAATGTGAGTCCAGTTAGGA 60.056 47.826 0.00 0.00 46.75 2.94
4069 5346 3.055530 AGCTGAATGTGAGTCCAGTTAGG 60.056 47.826 0.00 0.00 39.47 2.69
4071 5348 4.623932 AAGCTGAATGTGAGTCCAGTTA 57.376 40.909 0.00 0.00 0.00 2.24
4073 5350 3.498774 AAAGCTGAATGTGAGTCCAGT 57.501 42.857 0.00 0.00 0.00 4.00
4075 5352 6.489700 TCATTTTAAAGCTGAATGTGAGTCCA 59.510 34.615 10.35 0.00 33.60 4.02
4076 5353 6.913170 TCATTTTAAAGCTGAATGTGAGTCC 58.087 36.000 10.35 0.00 33.60 3.85
4077 5354 8.976986 AATCATTTTAAAGCTGAATGTGAGTC 57.023 30.769 6.63 0.00 33.60 3.36
4078 5355 9.199982 CAAATCATTTTAAAGCTGAATGTGAGT 57.800 29.630 6.63 3.23 33.60 3.41
4079 5356 9.414295 TCAAATCATTTTAAAGCTGAATGTGAG 57.586 29.630 6.63 0.00 33.60 3.51
4080 5357 9.932207 ATCAAATCATTTTAAAGCTGAATGTGA 57.068 25.926 6.63 9.54 33.60 3.58
4094 5371 9.798994 GATGTCTCAGCTTTATCAAATCATTTT 57.201 29.630 0.00 0.00 0.00 1.82
4095 5372 8.963725 TGATGTCTCAGCTTTATCAAATCATTT 58.036 29.630 0.00 0.00 0.00 2.32
4096 5373 8.515695 TGATGTCTCAGCTTTATCAAATCATT 57.484 30.769 0.00 0.00 0.00 2.57
4097 5374 8.515695 TTGATGTCTCAGCTTTATCAAATCAT 57.484 30.769 0.00 0.00 35.51 2.45
4099 5376 9.630098 TTTTTGATGTCTCAGCTTTATCAAATC 57.370 29.630 15.44 3.05 43.28 2.17
4100 5377 9.635520 CTTTTTGATGTCTCAGCTTTATCAAAT 57.364 29.630 15.44 0.00 43.28 2.32
4101 5378 8.632679 ACTTTTTGATGTCTCAGCTTTATCAAA 58.367 29.630 12.71 12.71 42.59 2.69
4103 5380 7.750229 ACTTTTTGATGTCTCAGCTTTATCA 57.250 32.000 0.00 0.00 31.68 2.15
4104 5381 8.909671 CAAACTTTTTGATGTCTCAGCTTTATC 58.090 33.333 0.00 0.00 31.68 1.75
4107 5384 5.521372 GCAAACTTTTTGATGTCTCAGCTTT 59.479 36.000 2.80 0.00 31.68 3.51
4108 5385 5.045872 GCAAACTTTTTGATGTCTCAGCTT 58.954 37.500 2.80 0.00 31.68 3.74
4109 5386 4.340381 AGCAAACTTTTTGATGTCTCAGCT 59.660 37.500 2.80 0.00 31.68 4.24
4110 5387 4.443394 CAGCAAACTTTTTGATGTCTCAGC 59.557 41.667 8.40 0.00 31.79 4.26
4111 5388 4.443394 GCAGCAAACTTTTTGATGTCTCAG 59.557 41.667 15.95 0.00 38.03 3.35
4112 5389 4.098349 AGCAGCAAACTTTTTGATGTCTCA 59.902 37.500 15.95 0.00 38.03 3.27
4113 5390 4.614946 AGCAGCAAACTTTTTGATGTCTC 58.385 39.130 15.95 2.85 38.03 3.36
4115 5392 3.737774 GGAGCAGCAAACTTTTTGATGTC 59.262 43.478 15.95 12.17 38.03 3.06
4116 5393 3.132646 TGGAGCAGCAAACTTTTTGATGT 59.867 39.130 15.95 5.56 38.03 3.06
4117 5394 3.719924 TGGAGCAGCAAACTTTTTGATG 58.280 40.909 11.58 11.58 38.69 3.07
4119 5396 3.719924 CATGGAGCAGCAAACTTTTTGA 58.280 40.909 2.80 0.00 0.00 2.69
4120 5397 2.222445 GCATGGAGCAGCAAACTTTTTG 59.778 45.455 0.00 0.00 44.79 2.44
4121 5398 2.486918 GCATGGAGCAGCAAACTTTTT 58.513 42.857 0.00 0.00 44.79 1.94
4123 5400 3.900446 GCATGGAGCAGCAAACTTT 57.100 47.368 0.00 0.00 44.79 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.