Multiple sequence alignment - TraesCS3B01G502900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G502900 chr3B 100.000 3943 0 0 1 3943 747092723 747096665 0.000000e+00 7282.0
1 TraesCS3B01G502900 chr3B 93.550 2682 103 18 843 3492 744546868 744544225 0.000000e+00 3930.0
2 TraesCS3B01G502900 chr3B 88.262 1116 104 13 959 2050 747384338 747385450 0.000000e+00 1310.0
3 TraesCS3B01G502900 chr3B 84.053 1367 177 30 928 2266 745203470 745202117 0.000000e+00 1279.0
4 TraesCS3B01G502900 chr3B 87.776 1088 106 13 987 2050 744512927 744511843 0.000000e+00 1247.0
5 TraesCS3B01G502900 chr3B 85.156 1253 146 28 1039 2277 745540165 745541391 0.000000e+00 1247.0
6 TraesCS3B01G502900 chr3B 83.639 1308 187 18 985 2277 746856388 746855093 0.000000e+00 1205.0
7 TraesCS3B01G502900 chr3B 83.486 1314 190 18 979 2277 744590564 744591865 0.000000e+00 1199.0
8 TraesCS3B01G502900 chr3B 84.595 1110 145 17 985 2080 744419877 744418780 0.000000e+00 1079.0
9 TraesCS3B01G502900 chr3B 92.241 696 49 5 1 692 72205116 72205810 0.000000e+00 981.0
10 TraesCS3B01G502900 chr3B 83.251 1009 117 27 1317 2279 745244580 745243578 0.000000e+00 880.0
11 TraesCS3B01G502900 chr3B 85.857 601 59 12 2493 3074 744511351 744510758 2.010000e-172 616.0
12 TraesCS3B01G502900 chr3B 84.692 601 65 13 2493 3074 747385859 747386451 3.420000e-160 575.0
13 TraesCS3B01G502900 chr3B 95.775 355 14 1 3553 3906 744544232 744543878 4.420000e-159 571.0
14 TraesCS3B01G502900 chr3B 87.333 450 49 7 2509 2957 747331926 747332368 3.520000e-140 508.0
15 TraesCS3B01G502900 chr3B 81.077 650 91 22 2493 3131 747494507 747495135 1.270000e-134 490.0
16 TraesCS3B01G502900 chr3B 86.772 189 21 1 2079 2267 745548021 745548205 1.440000e-49 207.0
17 TraesCS3B01G502900 chr3B 90.265 113 11 0 1938 2050 747331386 747331498 8.830000e-32 148.0
18 TraesCS3B01G502900 chr3B 82.114 123 19 3 3423 3543 744338411 744338290 6.970000e-18 102.0
19 TraesCS3B01G502900 chr3B 94.872 39 2 0 2278 2316 745202089 745202051 1.180000e-05 62.1
20 TraesCS3B01G502900 chr3A 89.808 2139 131 56 930 3055 629056429 629058493 0.000000e+00 2662.0
21 TraesCS3B01G502900 chr3A 84.126 1115 147 23 982 2080 629086988 629088088 0.000000e+00 1051.0
22 TraesCS3B01G502900 chr3A 84.173 1112 146 23 985 2080 696332974 696331877 0.000000e+00 1051.0
23 TraesCS3B01G502900 chr3A 82.536 1191 154 31 1107 2277 696477918 696476762 0.000000e+00 998.0
24 TraesCS3B01G502900 chr3A 84.833 600 66 12 2493 3074 696343363 696342771 7.340000e-162 580.0
25 TraesCS3B01G502900 chr3A 92.405 158 9 3 3630 3786 629060504 629060659 5.130000e-54 222.0
26 TraesCS3B01G502900 chr3A 85.938 192 10 7 3323 3514 629060123 629060297 5.200000e-44 189.0
27 TraesCS3B01G502900 chr3A 79.310 261 13 17 3080 3320 629059792 629060031 1.140000e-30 145.0
28 TraesCS3B01G502900 chr3D 89.137 1565 67 26 1622 3109 560286133 560284595 0.000000e+00 1853.0
29 TraesCS3B01G502900 chr3D 85.404 1336 148 27 985 2277 560551558 560552889 0.000000e+00 1343.0
30 TraesCS3B01G502900 chr3D 86.089 1258 145 23 1039 2277 560826916 560828162 0.000000e+00 1327.0
31 TraesCS3B01G502900 chr3D 91.079 964 78 7 946 1905 560269649 560268690 0.000000e+00 1297.0
32 TraesCS3B01G502900 chr3D 80.914 1488 208 50 977 2433 560477775 560479217 0.000000e+00 1105.0
33 TraesCS3B01G502900 chr3D 81.825 1326 190 35 986 2283 560198972 560197670 0.000000e+00 1066.0
34 TraesCS3B01G502900 chr3D 84.229 1116 146 23 985 2084 560235129 560234028 0.000000e+00 1059.0
35 TraesCS3B01G502900 chr3D 85.691 622 61 12 2502 3103 560268069 560267456 7.190000e-177 630.0
36 TraesCS3B01G502900 chr3D 93.976 415 25 0 3321 3735 560284355 560283941 2.590000e-176 628.0
37 TraesCS3B01G502900 chr3D 86.620 142 18 1 3479 3620 560267041 560266901 5.280000e-34 156.0
38 TraesCS3B01G502900 chr3D 97.059 34 1 0 3473 3506 560110439 560110406 1.530000e-04 58.4
39 TraesCS3B01G502900 chrUn 83.320 1277 150 38 1053 2279 301717207 301718470 0.000000e+00 1120.0
40 TraesCS3B01G502900 chr5A 91.026 702 53 8 1 694 491580293 491579594 0.000000e+00 939.0
41 TraesCS3B01G502900 chr5A 90.987 699 54 8 1 692 14246917 14247613 0.000000e+00 933.0
42 TraesCS3B01G502900 chr5A 80.993 705 117 17 1 695 30680629 30679932 9.640000e-151 544.0
43 TraesCS3B01G502900 chr2D 86.246 698 89 7 1 693 497912926 497912231 0.000000e+00 750.0
44 TraesCS3B01G502900 chr2D 93.162 117 8 0 721 837 122863401 122863517 5.240000e-39 172.0
45 TraesCS3B01G502900 chr2A 85.244 698 96 7 1 693 102743213 102742518 0.000000e+00 712.0
46 TraesCS3B01G502900 chr2A 87.218 133 16 1 718 850 739282662 739282531 2.450000e-32 150.0
47 TraesCS3B01G502900 chr7A 84.473 702 99 10 1 697 295220213 295219517 0.000000e+00 684.0
48 TraesCS3B01G502900 chr7A 90.000 120 12 0 718 837 17475385 17475504 5.280000e-34 156.0
49 TraesCS3B01G502900 chr1D 87.288 590 73 2 1 588 439432184 439432773 0.000000e+00 673.0
50 TraesCS3B01G502900 chr1B 82.295 706 107 14 1 693 665491785 665492485 2.620000e-166 595.0
51 TraesCS3B01G502900 chr1B 94.167 120 7 0 719 838 568973228 568973347 2.420000e-42 183.0
52 TraesCS3B01G502900 chr5B 95.000 120 6 0 718 837 359484341 359484460 5.200000e-44 189.0
53 TraesCS3B01G502900 chr6B 92.500 120 9 0 718 837 687051847 687051728 5.240000e-39 172.0
54 TraesCS3B01G502900 chr7D 90.678 118 11 0 720 837 176125157 176125274 1.470000e-34 158.0
55 TraesCS3B01G502900 chr2B 90.083 121 12 0 718 838 444543982 444544102 1.470000e-34 158.0
56 TraesCS3B01G502900 chr2B 90.000 120 12 0 718 837 729806169 729806050 5.280000e-34 156.0
57 TraesCS3B01G502900 chr6D 94.872 39 1 1 2450 2488 411217085 411217048 4.260000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G502900 chr3B 747092723 747096665 3942 False 7282.000000 7282 100.000000 1 3943 1 chr3B.!!$F5 3942
1 TraesCS3B01G502900 chr3B 744543878 744546868 2990 True 2250.500000 3930 94.662500 843 3906 2 chr3B.!!$R6 3063
2 TraesCS3B01G502900 chr3B 745540165 745541391 1226 False 1247.000000 1247 85.156000 1039 2277 1 chr3B.!!$F3 1238
3 TraesCS3B01G502900 chr3B 746855093 746856388 1295 True 1205.000000 1205 83.639000 985 2277 1 chr3B.!!$R4 1292
4 TraesCS3B01G502900 chr3B 744590564 744591865 1301 False 1199.000000 1199 83.486000 979 2277 1 chr3B.!!$F2 1298
5 TraesCS3B01G502900 chr3B 744418780 744419877 1097 True 1079.000000 1079 84.595000 985 2080 1 chr3B.!!$R2 1095
6 TraesCS3B01G502900 chr3B 72205116 72205810 694 False 981.000000 981 92.241000 1 692 1 chr3B.!!$F1 691
7 TraesCS3B01G502900 chr3B 747384338 747386451 2113 False 942.500000 1310 86.477000 959 3074 2 chr3B.!!$F8 2115
8 TraesCS3B01G502900 chr3B 744510758 744512927 2169 True 931.500000 1247 86.816500 987 3074 2 chr3B.!!$R5 2087
9 TraesCS3B01G502900 chr3B 745243578 745244580 1002 True 880.000000 880 83.251000 1317 2279 1 chr3B.!!$R3 962
10 TraesCS3B01G502900 chr3B 745202051 745203470 1419 True 670.550000 1279 89.462500 928 2316 2 chr3B.!!$R7 1388
11 TraesCS3B01G502900 chr3B 747494507 747495135 628 False 490.000000 490 81.077000 2493 3131 1 chr3B.!!$F6 638
12 TraesCS3B01G502900 chr3B 747331386 747332368 982 False 328.000000 508 88.799000 1938 2957 2 chr3B.!!$F7 1019
13 TraesCS3B01G502900 chr3A 629086988 629088088 1100 False 1051.000000 1051 84.126000 982 2080 1 chr3A.!!$F1 1098
14 TraesCS3B01G502900 chr3A 696331877 696332974 1097 True 1051.000000 1051 84.173000 985 2080 1 chr3A.!!$R1 1095
15 TraesCS3B01G502900 chr3A 696476762 696477918 1156 True 998.000000 998 82.536000 1107 2277 1 chr3A.!!$R3 1170
16 TraesCS3B01G502900 chr3A 629056429 629060659 4230 False 804.500000 2662 86.865250 930 3786 4 chr3A.!!$F2 2856
17 TraesCS3B01G502900 chr3A 696342771 696343363 592 True 580.000000 580 84.833000 2493 3074 1 chr3A.!!$R2 581
18 TraesCS3B01G502900 chr3D 560551558 560552889 1331 False 1343.000000 1343 85.404000 985 2277 1 chr3D.!!$F2 1292
19 TraesCS3B01G502900 chr3D 560826916 560828162 1246 False 1327.000000 1327 86.089000 1039 2277 1 chr3D.!!$F3 1238
20 TraesCS3B01G502900 chr3D 560283941 560286133 2192 True 1240.500000 1853 91.556500 1622 3735 2 chr3D.!!$R5 2113
21 TraesCS3B01G502900 chr3D 560477775 560479217 1442 False 1105.000000 1105 80.914000 977 2433 1 chr3D.!!$F1 1456
22 TraesCS3B01G502900 chr3D 560197670 560198972 1302 True 1066.000000 1066 81.825000 986 2283 1 chr3D.!!$R2 1297
23 TraesCS3B01G502900 chr3D 560234028 560235129 1101 True 1059.000000 1059 84.229000 985 2084 1 chr3D.!!$R3 1099
24 TraesCS3B01G502900 chr3D 560266901 560269649 2748 True 694.333333 1297 87.796667 946 3620 3 chr3D.!!$R4 2674
25 TraesCS3B01G502900 chrUn 301717207 301718470 1263 False 1120.000000 1120 83.320000 1053 2279 1 chrUn.!!$F1 1226
26 TraesCS3B01G502900 chr5A 491579594 491580293 699 True 939.000000 939 91.026000 1 694 1 chr5A.!!$R2 693
27 TraesCS3B01G502900 chr5A 14246917 14247613 696 False 933.000000 933 90.987000 1 692 1 chr5A.!!$F1 691
28 TraesCS3B01G502900 chr5A 30679932 30680629 697 True 544.000000 544 80.993000 1 695 1 chr5A.!!$R1 694
29 TraesCS3B01G502900 chr2D 497912231 497912926 695 True 750.000000 750 86.246000 1 693 1 chr2D.!!$R1 692
30 TraesCS3B01G502900 chr2A 102742518 102743213 695 True 712.000000 712 85.244000 1 693 1 chr2A.!!$R1 692
31 TraesCS3B01G502900 chr7A 295219517 295220213 696 True 684.000000 684 84.473000 1 697 1 chr7A.!!$R1 696
32 TraesCS3B01G502900 chr1D 439432184 439432773 589 False 673.000000 673 87.288000 1 588 1 chr1D.!!$F1 587
33 TraesCS3B01G502900 chr1B 665491785 665492485 700 False 595.000000 595 82.295000 1 693 1 chr1B.!!$F2 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 745 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
740 746 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.0 44.66 1.40 F
742 748 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
743 749 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.0 5.23 0.0 44.66 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2268 2705 1.544724 TGCCAATGCAGAGTTAACCC 58.455 50.000 0.88 0.0 44.23 4.11 R
2696 3237 1.597302 CCGACCTCTCTCCGCGATA 60.597 63.158 8.23 0.0 0.00 2.92 R
2744 3285 2.560105 GCCAGAGGAGAAACATTTGCTT 59.440 45.455 0.00 0.0 0.00 3.91 R
2945 3486 4.479786 ACTTACAGAGATCCTTTCTGCC 57.520 45.455 9.71 0.0 44.63 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 9.757227 GATATAGCTCTGGTATGTTATGAATCC 57.243 37.037 0.00 0.00 0.00 3.01
217 223 0.827507 GACCACCATGCACCACCTTT 60.828 55.000 0.00 0.00 0.00 3.11
266 272 4.460034 GGAAGATAAAAAGGTTTACGCCCA 59.540 41.667 0.00 0.00 32.04 5.36
430 436 1.484653 TCCCCTACAACCACATCATCG 59.515 52.381 0.00 0.00 0.00 3.84
445 451 3.382048 TCATCGAGCTCATCATCTTGG 57.618 47.619 15.40 0.00 0.00 3.61
481 487 6.492007 TGCAACATCTCTTCAAGATTCTTC 57.508 37.500 0.00 0.00 42.30 2.87
485 491 5.743117 ACATCTCTTCAAGATTCTTCCCTG 58.257 41.667 0.00 0.00 42.30 4.45
486 492 5.250313 ACATCTCTTCAAGATTCTTCCCTGT 59.750 40.000 0.00 0.00 42.30 4.00
487 493 5.413309 TCTCTTCAAGATTCTTCCCTGTC 57.587 43.478 0.00 0.00 0.00 3.51
488 494 4.223923 TCTCTTCAAGATTCTTCCCTGTCC 59.776 45.833 0.00 0.00 0.00 4.02
489 495 3.909995 TCTTCAAGATTCTTCCCTGTCCA 59.090 43.478 0.00 0.00 0.00 4.02
490 496 3.703001 TCAAGATTCTTCCCTGTCCAC 57.297 47.619 0.00 0.00 0.00 4.02
491 497 2.305927 TCAAGATTCTTCCCTGTCCACC 59.694 50.000 0.00 0.00 0.00 4.61
492 498 1.290134 AGATTCTTCCCTGTCCACCC 58.710 55.000 0.00 0.00 0.00 4.61
493 499 0.256177 GATTCTTCCCTGTCCACCCC 59.744 60.000 0.00 0.00 0.00 4.95
494 500 1.562672 ATTCTTCCCTGTCCACCCCG 61.563 60.000 0.00 0.00 0.00 5.73
495 501 4.410400 CTTCCCTGTCCACCCCGC 62.410 72.222 0.00 0.00 0.00 6.13
499 505 4.394712 CCTGTCCACCCCGCAGAC 62.395 72.222 0.00 0.00 32.39 3.51
500 506 4.742201 CTGTCCACCCCGCAGACG 62.742 72.222 0.00 0.00 39.67 4.18
502 508 4.736896 GTCCACCCCGCAGACGAC 62.737 72.222 0.00 0.00 43.93 4.34
505 511 4.129737 CACCCCGCAGACGACGAT 62.130 66.667 0.00 0.00 43.93 3.73
506 512 3.379445 ACCCCGCAGACGACGATT 61.379 61.111 0.00 0.00 43.93 3.34
507 513 2.582498 CCCCGCAGACGACGATTC 60.582 66.667 0.00 0.00 43.93 2.52
516 522 2.687436 CGACGATTCGCACGTTCC 59.313 61.111 5.86 0.00 43.97 3.62
517 523 2.687436 GACGATTCGCACGTTCCG 59.313 61.111 5.86 0.00 43.97 4.30
518 524 3.401846 GACGATTCGCACGTTCCGC 62.402 63.158 5.86 0.00 43.97 5.54
519 525 4.204891 CGATTCGCACGTTCCGCC 62.205 66.667 0.00 0.00 0.00 6.13
520 526 3.115892 GATTCGCACGTTCCGCCA 61.116 61.111 0.75 0.00 0.00 5.69
521 527 2.435938 ATTCGCACGTTCCGCCAT 60.436 55.556 0.75 0.00 0.00 4.40
522 528 2.361427 GATTCGCACGTTCCGCCATC 62.361 60.000 0.75 2.29 0.00 3.51
523 529 2.852495 ATTCGCACGTTCCGCCATCT 62.852 55.000 0.75 0.00 0.00 2.90
524 530 2.202690 CGCACGTTCCGCCATCTA 60.203 61.111 0.00 0.00 0.00 1.98
525 531 2.230940 CGCACGTTCCGCCATCTAG 61.231 63.158 0.00 0.00 0.00 2.43
526 532 1.883084 GCACGTTCCGCCATCTAGG 60.883 63.158 0.00 0.00 41.84 3.02
527 533 1.227263 CACGTTCCGCCATCTAGGG 60.227 63.158 0.00 0.00 38.09 3.53
528 534 1.684734 ACGTTCCGCCATCTAGGGT 60.685 57.895 0.00 0.00 38.09 4.34
529 535 1.262640 ACGTTCCGCCATCTAGGGTT 61.263 55.000 0.00 0.00 38.09 4.11
530 536 0.107848 CGTTCCGCCATCTAGGGTTT 60.108 55.000 0.00 0.00 38.09 3.27
531 537 1.677820 CGTTCCGCCATCTAGGGTTTT 60.678 52.381 0.00 0.00 38.09 2.43
532 538 2.014857 GTTCCGCCATCTAGGGTTTTC 58.985 52.381 0.00 0.00 38.09 2.29
533 539 0.544697 TCCGCCATCTAGGGTTTTCC 59.455 55.000 0.00 0.00 38.09 3.13
535 541 1.064685 CCGCCATCTAGGGTTTTCCTT 60.065 52.381 0.00 0.00 45.47 3.36
536 542 2.289565 CGCCATCTAGGGTTTTCCTTC 58.710 52.381 0.00 0.00 45.47 3.46
537 543 2.289565 GCCATCTAGGGTTTTCCTTCG 58.710 52.381 0.00 0.00 45.47 3.79
538 544 2.093128 GCCATCTAGGGTTTTCCTTCGA 60.093 50.000 0.00 0.00 45.47 3.71
539 545 3.532542 CCATCTAGGGTTTTCCTTCGAC 58.467 50.000 0.00 0.00 45.47 4.20
540 546 3.187700 CATCTAGGGTTTTCCTTCGACG 58.812 50.000 0.00 0.00 45.47 5.12
541 547 1.547372 TCTAGGGTTTTCCTTCGACGG 59.453 52.381 0.45 0.45 45.47 4.79
542 548 1.274447 CTAGGGTTTTCCTTCGACGGT 59.726 52.381 7.94 0.00 45.47 4.83
543 549 1.341080 AGGGTTTTCCTTCGACGGTA 58.659 50.000 7.94 0.00 45.47 4.02
544 550 1.274447 AGGGTTTTCCTTCGACGGTAG 59.726 52.381 7.94 0.00 45.47 3.18
545 551 1.273327 GGGTTTTCCTTCGACGGTAGA 59.727 52.381 7.94 0.00 40.46 2.59
546 552 2.289010 GGGTTTTCCTTCGACGGTAGAA 60.289 50.000 7.94 3.68 40.46 2.10
547 553 2.991866 GGTTTTCCTTCGACGGTAGAAG 59.008 50.000 20.06 20.06 43.35 2.85
548 554 2.358939 TTTCCTTCGACGGTAGAAGC 57.641 50.000 21.18 0.00 42.63 3.86
549 555 0.169672 TTCCTTCGACGGTAGAAGCG 59.830 55.000 21.18 15.49 42.63 4.68
550 556 1.872679 CCTTCGACGGTAGAAGCGC 60.873 63.158 21.18 0.00 43.79 5.92
551 557 2.202388 TTCGACGGTAGAAGCGCG 60.202 61.111 0.00 0.00 43.79 6.86
552 558 4.824166 TCGACGGTAGAAGCGCGC 62.824 66.667 26.66 26.66 43.79 6.86
554 560 4.789075 GACGGTAGAAGCGCGCCA 62.789 66.667 30.33 7.98 43.79 5.69
555 561 4.367023 ACGGTAGAAGCGCGCCAA 62.367 61.111 30.33 7.96 43.79 4.52
556 562 3.554692 CGGTAGAAGCGCGCCAAG 61.555 66.667 30.33 8.73 30.39 3.61
557 563 3.865830 GGTAGAAGCGCGCCAAGC 61.866 66.667 30.33 16.37 43.95 4.01
568 574 4.838152 GCCAAGCAGCCGATCCGA 62.838 66.667 0.00 0.00 0.00 4.55
569 575 2.587194 CCAAGCAGCCGATCCGAG 60.587 66.667 0.00 0.00 0.00 4.63
570 576 2.185350 CAAGCAGCCGATCCGAGT 59.815 61.111 0.00 0.00 0.00 4.18
571 577 1.880340 CAAGCAGCCGATCCGAGTC 60.880 63.158 0.00 0.00 0.00 3.36
572 578 3.417275 AAGCAGCCGATCCGAGTCG 62.417 63.158 5.29 5.29 41.13 4.18
574 580 3.893763 CAGCCGATCCGAGTCGCT 61.894 66.667 7.12 0.00 40.17 4.93
575 581 3.587933 AGCCGATCCGAGTCGCTC 61.588 66.667 7.12 5.16 40.17 5.03
576 582 3.889044 GCCGATCCGAGTCGCTCA 61.889 66.667 7.12 0.00 40.17 4.26
577 583 2.024871 CCGATCCGAGTCGCTCAC 59.975 66.667 7.12 0.00 40.17 3.51
578 584 2.024871 CGATCCGAGTCGCTCACC 59.975 66.667 7.12 0.00 34.56 4.02
579 585 2.473760 CGATCCGAGTCGCTCACCT 61.474 63.158 7.12 0.00 34.56 4.00
580 586 1.064946 GATCCGAGTCGCTCACCTG 59.935 63.158 7.12 0.00 0.00 4.00
581 587 2.945398 GATCCGAGTCGCTCACCTGC 62.945 65.000 7.12 0.00 0.00 4.85
582 588 4.803426 CCGAGTCGCTCACCTGCC 62.803 72.222 7.12 0.00 0.00 4.85
584 590 3.749064 GAGTCGCTCACCTGCCGA 61.749 66.667 2.53 0.00 0.00 5.54
585 591 3.973267 GAGTCGCTCACCTGCCGAC 62.973 68.421 4.43 4.43 37.04 4.79
588 594 4.680237 CGCTCACCTGCCGACCAA 62.680 66.667 0.00 0.00 0.00 3.67
589 595 2.743928 GCTCACCTGCCGACCAAG 60.744 66.667 0.00 0.00 0.00 3.61
590 596 3.059982 CTCACCTGCCGACCAAGA 58.940 61.111 0.00 0.00 0.00 3.02
591 597 1.079543 CTCACCTGCCGACCAAGAG 60.080 63.158 0.00 0.00 0.00 2.85
592 598 2.046892 CACCTGCCGACCAAGAGG 60.047 66.667 0.00 0.00 42.21 3.69
593 599 2.203788 ACCTGCCGACCAAGAGGA 60.204 61.111 0.00 0.00 38.69 3.71
594 600 1.613630 ACCTGCCGACCAAGAGGAT 60.614 57.895 0.00 0.00 38.69 3.24
595 601 1.153289 CCTGCCGACCAAGAGGATG 60.153 63.158 0.00 0.00 38.69 3.51
596 602 1.617018 CCTGCCGACCAAGAGGATGA 61.617 60.000 0.00 0.00 38.69 2.92
597 603 0.467384 CTGCCGACCAAGAGGATGAT 59.533 55.000 0.00 0.00 38.69 2.45
598 604 0.465705 TGCCGACCAAGAGGATGATC 59.534 55.000 0.00 0.00 38.69 2.92
599 605 0.755686 GCCGACCAAGAGGATGATCT 59.244 55.000 0.00 0.00 38.69 2.75
600 606 1.539929 GCCGACCAAGAGGATGATCTG 60.540 57.143 0.00 0.00 38.69 2.90
601 607 1.539929 CCGACCAAGAGGATGATCTGC 60.540 57.143 0.00 0.00 38.69 4.26
602 608 1.863267 GACCAAGAGGATGATCTGCG 58.137 55.000 0.00 0.00 38.69 5.18
603 609 0.179062 ACCAAGAGGATGATCTGCGC 60.179 55.000 0.00 0.00 38.69 6.09
604 610 0.179065 CCAAGAGGATGATCTGCGCA 60.179 55.000 10.98 10.98 36.89 6.09
605 611 1.218763 CAAGAGGATGATCTGCGCAG 58.781 55.000 31.53 31.53 0.00 5.18
606 612 0.106335 AAGAGGATGATCTGCGCAGG 59.894 55.000 35.36 18.08 0.00 4.85
607 613 1.301558 GAGGATGATCTGCGCAGGG 60.302 63.158 35.36 14.32 0.00 4.45
608 614 2.281345 GGATGATCTGCGCAGGGG 60.281 66.667 35.36 13.50 0.00 4.79
609 615 2.811514 GGATGATCTGCGCAGGGGA 61.812 63.158 35.36 18.84 0.00 4.81
610 616 1.146930 GATGATCTGCGCAGGGGAA 59.853 57.895 35.36 18.24 0.00 3.97
611 617 0.883814 GATGATCTGCGCAGGGGAAG 60.884 60.000 35.36 11.87 0.00 3.46
612 618 2.899339 GATCTGCGCAGGGGAAGC 60.899 66.667 35.36 16.77 0.00 3.86
613 619 3.687321 GATCTGCGCAGGGGAAGCA 62.687 63.158 35.36 16.27 39.25 3.91
628 634 2.822255 GCAGCCGGCGGTCAATTA 60.822 61.111 28.82 0.00 0.00 1.40
629 635 3.098555 CAGCCGGCGGTCAATTAC 58.901 61.111 28.82 8.71 0.00 1.89
630 636 1.449601 CAGCCGGCGGTCAATTACT 60.450 57.895 28.82 11.18 0.00 2.24
631 637 1.449601 AGCCGGCGGTCAATTACTG 60.450 57.895 28.82 0.00 37.55 2.74
632 638 2.469516 GCCGGCGGTCAATTACTGG 61.470 63.158 28.82 0.00 34.76 4.00
633 639 1.078708 CCGGCGGTCAATTACTGGT 60.079 57.895 19.97 0.00 34.76 4.00
634 640 0.176219 CCGGCGGTCAATTACTGGTA 59.824 55.000 19.97 0.00 34.76 3.25
635 641 1.405797 CCGGCGGTCAATTACTGGTAA 60.406 52.381 19.97 0.00 34.76 2.85
636 642 1.931172 CGGCGGTCAATTACTGGTAAG 59.069 52.381 0.00 0.00 34.76 2.34
637 643 2.417651 CGGCGGTCAATTACTGGTAAGA 60.418 50.000 0.00 0.00 34.76 2.10
638 644 3.740141 CGGCGGTCAATTACTGGTAAGAT 60.740 47.826 0.00 0.00 34.76 2.40
639 645 3.808174 GGCGGTCAATTACTGGTAAGATC 59.192 47.826 0.00 0.00 34.76 2.75
640 646 4.443034 GGCGGTCAATTACTGGTAAGATCT 60.443 45.833 0.00 0.00 34.76 2.75
641 647 4.745620 GCGGTCAATTACTGGTAAGATCTC 59.254 45.833 0.00 0.00 34.76 2.75
642 648 5.681437 GCGGTCAATTACTGGTAAGATCTCA 60.681 44.000 0.00 0.00 34.76 3.27
643 649 5.749109 CGGTCAATTACTGGTAAGATCTCAC 59.251 44.000 0.00 0.00 0.00 3.51
644 650 5.749109 GGTCAATTACTGGTAAGATCTCACG 59.251 44.000 0.00 0.00 0.00 4.35
645 651 5.749109 GTCAATTACTGGTAAGATCTCACGG 59.251 44.000 0.00 0.00 0.00 4.94
646 652 3.795623 TTACTGGTAAGATCTCACGGC 57.204 47.619 0.00 0.00 0.00 5.68
647 653 0.456221 ACTGGTAAGATCTCACGGCG 59.544 55.000 4.80 4.80 0.00 6.46
648 654 0.249073 CTGGTAAGATCTCACGGCGG 60.249 60.000 13.24 0.00 0.00 6.13
649 655 1.591863 GGTAAGATCTCACGGCGGC 60.592 63.158 13.24 0.00 0.00 6.53
650 656 1.944676 GTAAGATCTCACGGCGGCG 60.945 63.158 31.06 31.06 0.00 6.46
651 657 2.116533 TAAGATCTCACGGCGGCGA 61.117 57.895 38.93 16.52 0.00 5.54
652 658 1.452953 TAAGATCTCACGGCGGCGAT 61.453 55.000 38.93 21.00 0.00 4.58
653 659 2.960957 AAGATCTCACGGCGGCGATG 62.961 60.000 38.93 28.76 0.00 3.84
654 660 3.484742 GATCTCACGGCGGCGATGA 62.485 63.158 38.93 30.92 0.00 2.92
655 661 3.490793 ATCTCACGGCGGCGATGAG 62.491 63.158 35.32 35.32 41.06 2.90
656 662 4.193334 CTCACGGCGGCGATGAGA 62.193 66.667 36.59 27.09 42.07 3.27
657 663 3.490793 CTCACGGCGGCGATGAGAT 62.491 63.158 36.59 18.18 42.07 2.75
658 664 3.032609 CACGGCGGCGATGAGATC 61.033 66.667 38.93 0.00 0.00 2.75
666 672 2.732468 CGATGAGATCGCCGCCAG 60.732 66.667 0.00 0.00 46.55 4.85
667 673 2.730733 GATGAGATCGCCGCCAGA 59.269 61.111 0.00 0.00 0.00 3.86
668 674 1.372748 GATGAGATCGCCGCCAGAG 60.373 63.158 0.00 0.00 0.00 3.35
669 675 3.512223 ATGAGATCGCCGCCAGAGC 62.512 63.158 0.00 0.00 0.00 4.09
670 676 4.959596 GAGATCGCCGCCAGAGCC 62.960 72.222 0.00 0.00 34.57 4.70
676 682 4.103103 GCCGCCAGAGCCGAAAAC 62.103 66.667 0.00 0.00 34.57 2.43
677 683 3.431725 CCGCCAGAGCCGAAAACC 61.432 66.667 0.00 0.00 34.57 3.27
678 684 3.431725 CGCCAGAGCCGAAAACCC 61.432 66.667 0.00 0.00 34.57 4.11
679 685 2.034221 GCCAGAGCCGAAAACCCT 59.966 61.111 0.00 0.00 0.00 4.34
680 686 1.298667 GCCAGAGCCGAAAACCCTA 59.701 57.895 0.00 0.00 0.00 3.53
681 687 0.322187 GCCAGAGCCGAAAACCCTAA 60.322 55.000 0.00 0.00 0.00 2.69
682 688 1.739067 CCAGAGCCGAAAACCCTAAG 58.261 55.000 0.00 0.00 0.00 2.18
683 689 1.087501 CAGAGCCGAAAACCCTAAGC 58.912 55.000 0.00 0.00 0.00 3.09
684 690 0.391263 AGAGCCGAAAACCCTAAGCG 60.391 55.000 0.00 0.00 0.00 4.68
685 691 0.390735 GAGCCGAAAACCCTAAGCGA 60.391 55.000 0.00 0.00 0.00 4.93
686 692 0.391263 AGCCGAAAACCCTAAGCGAG 60.391 55.000 0.00 0.00 0.00 5.03
687 693 0.390735 GCCGAAAACCCTAAGCGAGA 60.391 55.000 0.00 0.00 0.00 4.04
688 694 1.641577 CCGAAAACCCTAAGCGAGAG 58.358 55.000 0.00 0.00 0.00 3.20
689 695 1.641577 CGAAAACCCTAAGCGAGAGG 58.358 55.000 0.00 0.00 0.00 3.69
697 703 3.926821 CCTAAGCGAGAGGGTAGATTC 57.073 52.381 0.00 0.00 0.00 2.52
698 704 2.226912 CCTAAGCGAGAGGGTAGATTCG 59.773 54.545 0.00 0.00 36.23 3.34
699 705 2.054232 AAGCGAGAGGGTAGATTCGA 57.946 50.000 0.00 0.00 35.19 3.71
700 706 2.279935 AGCGAGAGGGTAGATTCGAT 57.720 50.000 0.00 0.00 35.19 3.59
701 707 2.156098 AGCGAGAGGGTAGATTCGATC 58.844 52.381 0.00 0.00 35.19 3.69
702 708 1.135916 GCGAGAGGGTAGATTCGATCG 60.136 57.143 9.36 9.36 35.19 3.69
703 709 2.414806 CGAGAGGGTAGATTCGATCGA 58.585 52.381 15.15 15.15 35.19 3.59
704 710 2.806818 CGAGAGGGTAGATTCGATCGAA 59.193 50.000 30.83 30.83 38.59 3.71
705 711 3.120477 CGAGAGGGTAGATTCGATCGAAG 60.120 52.174 31.66 12.73 37.56 3.79
706 712 4.066490 GAGAGGGTAGATTCGATCGAAGA 58.934 47.826 31.66 18.62 45.75 2.87
707 713 4.462133 AGAGGGTAGATTCGATCGAAGAA 58.538 43.478 31.66 18.41 43.58 2.52
708 714 4.888239 AGAGGGTAGATTCGATCGAAGAAA 59.112 41.667 31.66 18.09 43.58 2.52
709 715 5.360144 AGAGGGTAGATTCGATCGAAGAAAA 59.640 40.000 31.66 16.47 43.58 2.29
710 716 5.974108 AGGGTAGATTCGATCGAAGAAAAA 58.026 37.500 31.66 11.83 43.58 1.94
729 735 2.693267 AAAAGCGATGTACTCCCTCC 57.307 50.000 0.00 0.00 0.00 4.30
730 736 0.460311 AAAGCGATGTACTCCCTCCG 59.540 55.000 0.00 0.00 0.00 4.63
731 737 0.683504 AAGCGATGTACTCCCTCCGT 60.684 55.000 0.00 0.00 0.00 4.69
732 738 1.102222 AGCGATGTACTCCCTCCGTC 61.102 60.000 0.00 0.00 0.00 4.79
733 739 2.031360 CGATGTACTCCCTCCGTCC 58.969 63.158 0.00 0.00 0.00 4.79
734 740 1.783031 CGATGTACTCCCTCCGTCCG 61.783 65.000 0.00 0.00 0.00 4.79
735 741 1.453762 GATGTACTCCCTCCGTCCGG 61.454 65.000 0.00 0.00 0.00 5.14
736 742 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
737 743 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
738 744 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
739 745 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
740 746 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
741 747 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
742 748 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
743 749 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
744 750 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
745 751 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
746 752 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
747 753 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
748 754 2.299582 TCCGTCCGGAAATACTTGTCAA 59.700 45.455 5.23 0.00 42.05 3.18
749 755 3.068560 CCGTCCGGAAATACTTGTCAAA 58.931 45.455 5.23 0.00 37.50 2.69
750 756 3.124636 CCGTCCGGAAATACTTGTCAAAG 59.875 47.826 5.23 0.00 37.11 2.77
751 757 3.124636 CGTCCGGAAATACTTGTCAAAGG 59.875 47.826 5.23 0.00 37.76 3.11
752 758 4.320870 GTCCGGAAATACTTGTCAAAGGA 58.679 43.478 5.23 0.00 37.76 3.36
753 759 4.758165 GTCCGGAAATACTTGTCAAAGGAA 59.242 41.667 5.23 0.00 37.76 3.36
754 760 5.414765 GTCCGGAAATACTTGTCAAAGGAAT 59.585 40.000 5.23 0.00 37.76 3.01
755 761 5.414454 TCCGGAAATACTTGTCAAAGGAATG 59.586 40.000 0.00 0.00 37.76 2.67
756 762 5.414454 CCGGAAATACTTGTCAAAGGAATGA 59.586 40.000 0.00 0.00 37.76 2.57
757 763 6.072175 CCGGAAATACTTGTCAAAGGAATGAA 60.072 38.462 0.00 0.00 37.76 2.57
758 764 7.362920 CCGGAAATACTTGTCAAAGGAATGAAT 60.363 37.037 0.00 0.00 37.76 2.57
759 765 7.485913 CGGAAATACTTGTCAAAGGAATGAATG 59.514 37.037 0.00 0.00 37.76 2.67
760 766 7.276438 GGAAATACTTGTCAAAGGAATGAATGC 59.724 37.037 0.00 0.00 37.76 3.56
761 767 6.839124 ATACTTGTCAAAGGAATGAATGCA 57.161 33.333 0.00 0.00 37.76 3.96
762 768 5.733620 ACTTGTCAAAGGAATGAATGCAT 57.266 34.783 0.00 0.00 37.76 3.96
763 769 5.475719 ACTTGTCAAAGGAATGAATGCATG 58.524 37.500 0.00 0.00 37.76 4.06
764 770 5.011329 ACTTGTCAAAGGAATGAATGCATGT 59.989 36.000 0.00 0.00 37.76 3.21
765 771 6.209192 ACTTGTCAAAGGAATGAATGCATGTA 59.791 34.615 0.00 0.00 37.76 2.29
766 772 6.198650 TGTCAAAGGAATGAATGCATGTAG 57.801 37.500 0.00 0.00 34.26 2.74
767 773 5.945191 TGTCAAAGGAATGAATGCATGTAGA 59.055 36.000 0.00 0.00 34.26 2.59
768 774 6.127925 TGTCAAAGGAATGAATGCATGTAGAC 60.128 38.462 0.00 0.00 34.26 2.59
769 775 5.945191 TCAAAGGAATGAATGCATGTAGACA 59.055 36.000 0.00 0.00 34.26 3.41
770 776 6.604396 TCAAAGGAATGAATGCATGTAGACAT 59.396 34.615 0.00 0.00 34.26 3.06
771 777 7.774625 TCAAAGGAATGAATGCATGTAGACATA 59.225 33.333 0.00 0.00 34.26 2.29
772 778 8.573885 CAAAGGAATGAATGCATGTAGACATAT 58.426 33.333 0.00 0.00 34.26 1.78
773 779 8.701908 AAGGAATGAATGCATGTAGACATATT 57.298 30.769 0.00 0.00 34.26 1.28
774 780 9.797642 AAGGAATGAATGCATGTAGACATATTA 57.202 29.630 0.00 0.00 34.26 0.98
775 781 9.970553 AGGAATGAATGCATGTAGACATATTAT 57.029 29.630 0.00 0.00 34.26 1.28
783 789 9.881649 ATGCATGTAGACATATTATAGTTCTGG 57.118 33.333 0.00 0.00 34.26 3.86
784 790 9.088987 TGCATGTAGACATATTATAGTTCTGGA 57.911 33.333 0.00 0.00 34.26 3.86
808 814 9.410556 GGATACATTCATTTTTATCCATTTCCG 57.589 33.333 0.00 0.00 39.84 4.30
809 815 9.965824 GATACATTCATTTTTATCCATTTCCGT 57.034 29.630 0.00 0.00 0.00 4.69
810 816 9.748708 ATACATTCATTTTTATCCATTTCCGTG 57.251 29.630 0.00 0.00 0.00 4.94
811 817 7.835822 ACATTCATTTTTATCCATTTCCGTGA 58.164 30.769 0.00 0.00 0.00 4.35
812 818 7.759433 ACATTCATTTTTATCCATTTCCGTGAC 59.241 33.333 0.00 0.00 0.00 3.67
813 819 6.825944 TCATTTTTATCCATTTCCGTGACA 57.174 33.333 0.00 0.00 0.00 3.58
814 820 7.220741 TCATTTTTATCCATTTCCGTGACAA 57.779 32.000 0.00 0.00 0.00 3.18
815 821 7.312154 TCATTTTTATCCATTTCCGTGACAAG 58.688 34.615 0.00 0.00 0.00 3.16
816 822 6.642707 TTTTTATCCATTTCCGTGACAAGT 57.357 33.333 0.00 0.00 0.00 3.16
817 823 7.747155 TTTTTATCCATTTCCGTGACAAGTA 57.253 32.000 0.00 0.00 0.00 2.24
818 824 7.747155 TTTTATCCATTTCCGTGACAAGTAA 57.253 32.000 0.00 0.00 0.00 2.24
819 825 7.931578 TTTATCCATTTCCGTGACAAGTAAT 57.068 32.000 0.00 0.00 0.00 1.89
820 826 7.931578 TTATCCATTTCCGTGACAAGTAATT 57.068 32.000 0.00 0.00 0.00 1.40
821 827 5.873179 TCCATTTCCGTGACAAGTAATTC 57.127 39.130 0.00 0.00 0.00 2.17
822 828 5.556915 TCCATTTCCGTGACAAGTAATTCT 58.443 37.500 0.00 0.00 0.00 2.40
823 829 5.411361 TCCATTTCCGTGACAAGTAATTCTG 59.589 40.000 0.00 0.00 0.00 3.02
824 830 5.391950 CCATTTCCGTGACAAGTAATTCTGG 60.392 44.000 0.00 0.00 0.00 3.86
825 831 4.610605 TTCCGTGACAAGTAATTCTGGA 57.389 40.909 0.00 0.00 0.00 3.86
826 832 3.921677 TCCGTGACAAGTAATTCTGGAC 58.078 45.455 0.00 0.00 0.00 4.02
827 833 2.666508 CCGTGACAAGTAATTCTGGACG 59.333 50.000 0.00 0.00 0.00 4.79
828 834 2.666508 CGTGACAAGTAATTCTGGACGG 59.333 50.000 0.00 0.00 0.00 4.79
829 835 3.613193 CGTGACAAGTAATTCTGGACGGA 60.613 47.826 0.00 0.00 0.00 4.69
830 836 3.927142 GTGACAAGTAATTCTGGACGGAG 59.073 47.826 0.00 0.00 0.00 4.63
831 837 3.056107 TGACAAGTAATTCTGGACGGAGG 60.056 47.826 0.00 0.00 0.00 4.30
832 838 2.236395 ACAAGTAATTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
833 839 2.500098 CAAGTAATTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
834 840 2.389715 AGTAATTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
835 841 2.108970 GTAATTCTGGACGGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
836 842 2.544844 AATTCTGGACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
837 843 2.777459 ATTCTGGACGGAGGGAGTAT 57.223 50.000 0.00 0.00 0.00 2.12
838 844 2.068834 TTCTGGACGGAGGGAGTATC 57.931 55.000 0.00 0.00 0.00 2.24
839 845 1.223501 TCTGGACGGAGGGAGTATCT 58.776 55.000 0.00 0.00 33.73 1.98
840 846 2.415624 TCTGGACGGAGGGAGTATCTA 58.584 52.381 0.00 0.00 33.73 1.98
841 847 2.372504 TCTGGACGGAGGGAGTATCTAG 59.627 54.545 0.00 0.00 33.73 2.43
858 864 7.367828 AGTATCTAGGTACTGGTTAATGGGAA 58.632 38.462 15.06 0.00 41.52 3.97
859 865 5.945144 TCTAGGTACTGGTTAATGGGAAC 57.055 43.478 0.00 0.00 41.52 3.62
860 866 3.622166 AGGTACTGGTTAATGGGAACG 57.378 47.619 0.00 0.00 37.18 3.95
861 867 2.237893 AGGTACTGGTTAATGGGAACGG 59.762 50.000 0.00 0.00 37.18 4.44
862 868 2.236893 GGTACTGGTTAATGGGAACGGA 59.763 50.000 0.00 0.00 0.00 4.69
1804 1840 3.775654 GGAGCCAGACCGGAGTGG 61.776 72.222 19.08 19.08 46.41 4.00
1884 1920 1.153568 CATCGACGTGGTGGATGCT 60.154 57.895 7.62 0.00 40.59 3.79
1920 1956 3.054878 GCTCTTTCAGTGGCAAATTGTG 58.945 45.455 0.00 0.00 0.00 3.33
2268 2705 3.863424 ACGCTCCATGTCTATGTAAAACG 59.137 43.478 0.00 0.00 32.21 3.60
2594 3135 5.010012 CACTGGCAAGGTCAATCTAAAGTTT 59.990 40.000 0.00 0.00 0.00 2.66
2744 3285 3.545124 GATGGTGGTCGTGGTGGCA 62.545 63.158 0.00 0.00 0.00 4.92
2945 3486 3.207778 CCTCCTCGAGTACCACTAGAAG 58.792 54.545 12.31 0.00 29.61 2.85
3016 3598 3.895656 TGTTACTCAGCTAGACTTGGTGT 59.104 43.478 14.30 1.23 34.86 4.16
3131 5011 1.282157 GGATTGCTGGTGGGAGTAACT 59.718 52.381 0.00 0.00 0.00 2.24
3133 5013 2.561478 TTGCTGGTGGGAGTAACTTC 57.439 50.000 0.00 0.00 0.00 3.01
3134 5014 1.729586 TGCTGGTGGGAGTAACTTCT 58.270 50.000 0.00 0.00 0.00 2.85
3135 5015 2.054799 TGCTGGTGGGAGTAACTTCTT 58.945 47.619 0.00 0.00 0.00 2.52
3136 5016 2.038557 TGCTGGTGGGAGTAACTTCTTC 59.961 50.000 0.00 0.00 0.00 2.87
3137 5017 2.038557 GCTGGTGGGAGTAACTTCTTCA 59.961 50.000 0.00 0.00 0.00 3.02
3138 5018 3.496160 GCTGGTGGGAGTAACTTCTTCAA 60.496 47.826 0.00 0.00 0.00 2.69
3139 5019 4.319177 CTGGTGGGAGTAACTTCTTCAAG 58.681 47.826 0.00 0.00 35.50 3.02
3140 5020 3.714798 TGGTGGGAGTAACTTCTTCAAGT 59.285 43.478 0.00 0.00 45.43 3.16
3141 5021 4.202326 TGGTGGGAGTAACTTCTTCAAGTC 60.202 45.833 0.00 0.00 42.45 3.01
3142 5022 4.040584 GGTGGGAGTAACTTCTTCAAGTCT 59.959 45.833 0.00 0.00 42.45 3.24
3143 5023 4.991687 GTGGGAGTAACTTCTTCAAGTCTG 59.008 45.833 0.00 0.00 42.45 3.51
3144 5024 4.654262 TGGGAGTAACTTCTTCAAGTCTGT 59.346 41.667 0.00 0.00 42.45 3.41
3145 5025 5.130477 TGGGAGTAACTTCTTCAAGTCTGTT 59.870 40.000 0.00 0.00 42.45 3.16
3146 5026 5.697178 GGGAGTAACTTCTTCAAGTCTGTTC 59.303 44.000 0.00 0.00 42.45 3.18
3147 5027 5.697178 GGAGTAACTTCTTCAAGTCTGTTCC 59.303 44.000 0.00 0.00 42.45 3.62
3148 5028 6.235231 AGTAACTTCTTCAAGTCTGTTCCA 57.765 37.500 0.00 0.00 42.45 3.53
3149 5029 6.831976 AGTAACTTCTTCAAGTCTGTTCCAT 58.168 36.000 0.00 0.00 42.45 3.41
3150 5030 6.931840 AGTAACTTCTTCAAGTCTGTTCCATC 59.068 38.462 0.00 0.00 42.45 3.51
3151 5031 5.559148 ACTTCTTCAAGTCTGTTCCATCT 57.441 39.130 0.00 0.00 38.62 2.90
3176 5056 9.840427 CTTCGAATTGGATAAAATGTTTGTAGT 57.160 29.630 0.00 0.00 0.00 2.73
3223 5123 9.823647 TCACTTTATTTTCCTTTTTACATTGCA 57.176 25.926 0.00 0.00 0.00 4.08
3235 5135 7.756722 CCTTTTTACATTGCACTCCATCTTTAG 59.243 37.037 0.00 0.00 0.00 1.85
3268 5174 5.304686 AGTATGGTCTTTCTGGTTTGTCA 57.695 39.130 0.00 0.00 0.00 3.58
3369 5387 3.688185 TGTTACGGCACACTGTTTGTTTA 59.312 39.130 0.00 0.00 35.67 2.01
3378 5396 5.625311 GCACACTGTTTGTTTATTAGACTGC 59.375 40.000 0.00 0.00 35.67 4.40
3382 5400 7.931948 ACACTGTTTGTTTATTAGACTGCTAGT 59.068 33.333 0.00 0.00 33.09 2.57
3383 5401 8.223769 CACTGTTTGTTTATTAGACTGCTAGTG 58.776 37.037 0.00 0.00 0.00 2.74
3400 5418 4.156556 GCTAGTGATGCATGGTGAAAGAAA 59.843 41.667 2.46 0.00 0.00 2.52
3421 5439 3.679824 AGTTCAGTTAGTAGGTGTGCC 57.320 47.619 0.00 0.00 0.00 5.01
3476 5512 7.753309 TTGCCTAGCTTAAACTATCACAAAA 57.247 32.000 0.00 0.00 0.00 2.44
3514 5575 4.275443 GCTTCATGGAAGAATCTGGATGAC 59.725 45.833 10.01 0.00 41.71 3.06
3682 5811 6.734104 AATGTAAGATGCTTCTGAACTCAC 57.266 37.500 2.39 0.00 30.72 3.51
3804 5934 1.490693 GGCCGTGCGATCATGTAGTG 61.491 60.000 0.00 0.00 0.00 2.74
3906 6036 9.356433 CAATTTGTGTTCATAACTTCATATGCA 57.644 29.630 0.00 0.00 34.05 3.96
3908 6038 8.914328 TTTGTGTTCATAACTTCATATGCATG 57.086 30.769 10.16 0.00 34.05 4.06
3909 6039 7.628769 TGTGTTCATAACTTCATATGCATGT 57.371 32.000 10.16 0.00 34.05 3.21
3916 6046 8.034804 TCATAACTTCATATGCATGTATACGCT 58.965 33.333 10.16 0.00 34.05 5.07
3920 6050 6.705825 ACTTCATATGCATGTATACGCTCAAA 59.294 34.615 10.16 0.00 33.57 2.69
3921 6051 7.388776 ACTTCATATGCATGTATACGCTCAAAT 59.611 33.333 10.16 0.00 33.57 2.32
3923 6053 6.650390 TCATATGCATGTATACGCTCAAATGT 59.350 34.615 10.16 0.00 33.57 2.71
3925 6055 5.559427 TGCATGTATACGCTCAAATGTTT 57.441 34.783 0.00 0.00 0.00 2.83
3926 6056 5.948588 TGCATGTATACGCTCAAATGTTTT 58.051 33.333 0.00 0.00 0.00 2.43
3927 6057 6.385843 TGCATGTATACGCTCAAATGTTTTT 58.614 32.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 5.917462 TGATGGATTATATGTATGGGCTCG 58.083 41.667 0.00 0.00 0.00 5.03
217 223 1.600636 CTGCCTTGGCGACTGGAAA 60.601 57.895 7.18 0.00 0.00 3.13
253 259 1.377612 GGAGGTGGGCGTAAACCTT 59.622 57.895 6.52 0.00 46.97 3.50
260 266 0.031414 AAGTATAGGGAGGTGGGCGT 60.031 55.000 0.00 0.00 0.00 5.68
285 291 2.225791 AATCTGGTCGCTAGCGCACA 62.226 55.000 31.82 27.72 39.59 4.57
430 436 2.224257 GGACCTCCAAGATGATGAGCTC 60.224 54.545 6.82 6.82 35.64 4.09
445 451 0.819259 TGTTGCAGCACTTGGACCTC 60.819 55.000 0.00 0.00 0.00 3.85
485 491 4.736896 GTCGTCTGCGGGGTGGAC 62.737 72.222 0.00 0.00 38.89 4.02
488 494 3.642778 AATCGTCGTCTGCGGGGTG 62.643 63.158 0.00 0.00 38.89 4.61
489 495 3.352338 GAATCGTCGTCTGCGGGGT 62.352 63.158 0.00 0.00 38.89 4.95
490 496 2.582498 GAATCGTCGTCTGCGGGG 60.582 66.667 0.00 0.00 38.89 5.73
491 497 2.949678 CGAATCGTCGTCTGCGGG 60.950 66.667 0.00 0.00 42.53 6.13
512 518 2.014857 GAAAACCCTAGATGGCGGAAC 58.985 52.381 0.00 0.00 0.00 3.62
513 519 1.064979 GGAAAACCCTAGATGGCGGAA 60.065 52.381 0.00 0.00 0.00 4.30
514 520 0.544697 GGAAAACCCTAGATGGCGGA 59.455 55.000 0.00 0.00 0.00 5.54
515 521 0.546598 AGGAAAACCCTAGATGGCGG 59.453 55.000 0.00 0.00 45.48 6.13
525 531 1.273327 TCTACCGTCGAAGGAAAACCC 59.727 52.381 24.79 0.00 34.73 4.11
526 532 2.730550 TCTACCGTCGAAGGAAAACC 57.269 50.000 24.79 0.00 34.73 3.27
527 533 2.411069 GCTTCTACCGTCGAAGGAAAAC 59.589 50.000 24.79 6.93 38.59 2.43
528 534 2.680577 GCTTCTACCGTCGAAGGAAAA 58.319 47.619 24.79 12.81 38.59 2.29
529 535 1.401931 CGCTTCTACCGTCGAAGGAAA 60.402 52.381 24.79 13.13 38.59 3.13
530 536 0.169672 CGCTTCTACCGTCGAAGGAA 59.830 55.000 24.79 7.10 38.59 3.36
531 537 1.798735 CGCTTCTACCGTCGAAGGA 59.201 57.895 24.79 6.86 38.59 3.36
532 538 1.872679 GCGCTTCTACCGTCGAAGG 60.873 63.158 16.38 16.38 38.59 3.46
533 539 2.215604 CGCGCTTCTACCGTCGAAG 61.216 63.158 5.56 8.16 40.57 3.79
534 540 2.202388 CGCGCTTCTACCGTCGAA 60.202 61.111 5.56 0.00 0.00 3.71
535 541 4.824166 GCGCGCTTCTACCGTCGA 62.824 66.667 26.67 0.00 0.00 4.20
537 543 4.789075 TGGCGCGCTTCTACCGTC 62.789 66.667 32.29 11.34 0.00 4.79
538 544 4.367023 TTGGCGCGCTTCTACCGT 62.367 61.111 32.29 0.00 0.00 4.83
539 545 3.554692 CTTGGCGCGCTTCTACCG 61.555 66.667 32.29 8.75 0.00 4.02
540 546 3.865830 GCTTGGCGCGCTTCTACC 61.866 66.667 32.29 13.79 0.00 3.18
541 547 3.088500 CTGCTTGGCGCGCTTCTAC 62.089 63.158 32.29 14.61 43.27 2.59
542 548 2.815211 CTGCTTGGCGCGCTTCTA 60.815 61.111 32.29 11.25 43.27 2.10
551 557 4.838152 TCGGATCGGCTGCTTGGC 62.838 66.667 0.00 0.00 37.94 4.52
552 558 2.587194 CTCGGATCGGCTGCTTGG 60.587 66.667 0.00 0.00 0.00 3.61
553 559 1.880340 GACTCGGATCGGCTGCTTG 60.880 63.158 0.00 0.00 0.00 4.01
554 560 2.496817 GACTCGGATCGGCTGCTT 59.503 61.111 0.00 0.00 0.00 3.91
555 561 3.893763 CGACTCGGATCGGCTGCT 61.894 66.667 0.00 0.00 38.47 4.24
557 563 3.815569 GAGCGACTCGGATCGGCTG 62.816 68.421 10.54 0.00 42.49 4.85
558 564 3.587933 GAGCGACTCGGATCGGCT 61.588 66.667 10.54 8.12 42.49 5.52
559 565 3.889044 TGAGCGACTCGGATCGGC 61.889 66.667 10.54 4.20 42.49 5.54
560 566 2.024871 GTGAGCGACTCGGATCGG 59.975 66.667 10.54 0.00 42.49 4.18
561 567 2.024871 GGTGAGCGACTCGGATCG 59.975 66.667 0.00 5.05 45.09 3.69
562 568 1.064946 CAGGTGAGCGACTCGGATC 59.935 63.158 0.00 0.00 32.35 3.36
563 569 3.069980 GCAGGTGAGCGACTCGGAT 62.070 63.158 0.00 0.00 32.35 4.18
564 570 3.749064 GCAGGTGAGCGACTCGGA 61.749 66.667 0.00 0.00 32.35 4.55
565 571 4.803426 GGCAGGTGAGCGACTCGG 62.803 72.222 0.00 0.00 32.35 4.63
567 573 3.749064 TCGGCAGGTGAGCGACTC 61.749 66.667 0.00 0.00 34.64 3.36
568 574 4.057428 GTCGGCAGGTGAGCGACT 62.057 66.667 0.00 0.00 36.14 4.18
571 577 4.680237 TTGGTCGGCAGGTGAGCG 62.680 66.667 0.00 0.00 36.66 5.03
572 578 2.743928 CTTGGTCGGCAGGTGAGC 60.744 66.667 0.00 0.00 0.00 4.26
573 579 1.079543 CTCTTGGTCGGCAGGTGAG 60.080 63.158 0.00 0.00 0.00 3.51
574 580 2.583441 CCTCTTGGTCGGCAGGTGA 61.583 63.158 0.00 0.00 0.00 4.02
575 581 1.903877 ATCCTCTTGGTCGGCAGGTG 61.904 60.000 0.00 0.00 34.23 4.00
576 582 1.613630 ATCCTCTTGGTCGGCAGGT 60.614 57.895 0.00 0.00 34.23 4.00
577 583 1.153289 CATCCTCTTGGTCGGCAGG 60.153 63.158 0.00 0.00 34.23 4.85
578 584 0.467384 ATCATCCTCTTGGTCGGCAG 59.533 55.000 0.00 0.00 34.23 4.85
579 585 0.465705 GATCATCCTCTTGGTCGGCA 59.534 55.000 0.00 0.00 34.23 5.69
580 586 0.755686 AGATCATCCTCTTGGTCGGC 59.244 55.000 0.00 0.00 31.79 5.54
581 587 1.539929 GCAGATCATCCTCTTGGTCGG 60.540 57.143 0.00 0.00 31.79 4.79
582 588 1.863267 GCAGATCATCCTCTTGGTCG 58.137 55.000 0.00 0.00 31.79 4.79
583 589 1.863267 CGCAGATCATCCTCTTGGTC 58.137 55.000 0.00 0.00 34.23 4.02
584 590 0.179062 GCGCAGATCATCCTCTTGGT 60.179 55.000 0.30 0.00 34.23 3.67
585 591 0.179065 TGCGCAGATCATCCTCTTGG 60.179 55.000 5.66 0.00 0.00 3.61
586 592 1.218763 CTGCGCAGATCATCCTCTTG 58.781 55.000 33.66 0.00 0.00 3.02
587 593 0.106335 CCTGCGCAGATCATCCTCTT 59.894 55.000 38.06 0.00 0.00 2.85
588 594 1.747145 CCTGCGCAGATCATCCTCT 59.253 57.895 38.06 0.00 0.00 3.69
589 595 1.301558 CCCTGCGCAGATCATCCTC 60.302 63.158 38.06 0.00 0.00 3.71
590 596 2.815945 CCCCTGCGCAGATCATCCT 61.816 63.158 38.06 0.00 0.00 3.24
591 597 2.281345 CCCCTGCGCAGATCATCC 60.281 66.667 38.06 0.00 0.00 3.51
592 598 0.883814 CTTCCCCTGCGCAGATCATC 60.884 60.000 38.06 0.00 0.00 2.92
593 599 1.147824 CTTCCCCTGCGCAGATCAT 59.852 57.895 38.06 0.00 0.00 2.45
594 600 2.586245 CTTCCCCTGCGCAGATCA 59.414 61.111 38.06 17.87 0.00 2.92
595 601 2.899339 GCTTCCCCTGCGCAGATC 60.899 66.667 38.06 15.46 0.00 2.75
596 602 3.720601 TGCTTCCCCTGCGCAGAT 61.721 61.111 38.06 0.00 0.00 2.90
609 615 2.813226 TAATTGACCGCCGGCTGCTT 62.813 55.000 26.68 12.16 38.05 3.91
610 616 3.323758 TAATTGACCGCCGGCTGCT 62.324 57.895 26.68 8.82 38.05 4.24
611 617 2.822255 TAATTGACCGCCGGCTGC 60.822 61.111 26.68 14.60 0.00 5.25
612 618 1.449601 AGTAATTGACCGCCGGCTG 60.450 57.895 26.68 21.87 0.00 4.85
613 619 1.449601 CAGTAATTGACCGCCGGCT 60.450 57.895 26.68 6.32 0.00 5.52
614 620 2.469516 CCAGTAATTGACCGCCGGC 61.470 63.158 19.07 19.07 0.00 6.13
615 621 0.176219 TACCAGTAATTGACCGCCGG 59.824 55.000 0.00 0.00 0.00 6.13
616 622 1.931172 CTTACCAGTAATTGACCGCCG 59.069 52.381 0.00 0.00 0.00 6.46
617 623 3.255969 TCTTACCAGTAATTGACCGCC 57.744 47.619 0.00 0.00 0.00 6.13
618 624 4.694339 AGATCTTACCAGTAATTGACCGC 58.306 43.478 0.00 0.00 0.00 5.68
619 625 5.749109 GTGAGATCTTACCAGTAATTGACCG 59.251 44.000 6.36 0.00 0.00 4.79
620 626 5.749109 CGTGAGATCTTACCAGTAATTGACC 59.251 44.000 11.71 0.00 0.00 4.02
621 627 5.749109 CCGTGAGATCTTACCAGTAATTGAC 59.251 44.000 11.71 0.00 0.00 3.18
622 628 5.681437 GCCGTGAGATCTTACCAGTAATTGA 60.681 44.000 11.71 0.00 0.00 2.57
623 629 4.508124 GCCGTGAGATCTTACCAGTAATTG 59.492 45.833 11.71 0.00 0.00 2.32
624 630 4.694339 GCCGTGAGATCTTACCAGTAATT 58.306 43.478 11.71 0.00 0.00 1.40
625 631 3.243434 CGCCGTGAGATCTTACCAGTAAT 60.243 47.826 11.71 0.00 0.00 1.89
626 632 2.098607 CGCCGTGAGATCTTACCAGTAA 59.901 50.000 11.71 0.00 0.00 2.24
627 633 1.674441 CGCCGTGAGATCTTACCAGTA 59.326 52.381 11.71 0.00 0.00 2.74
628 634 0.456221 CGCCGTGAGATCTTACCAGT 59.544 55.000 11.71 0.00 0.00 4.00
629 635 0.249073 CCGCCGTGAGATCTTACCAG 60.249 60.000 11.71 5.21 0.00 4.00
630 636 1.813859 CCGCCGTGAGATCTTACCA 59.186 57.895 11.71 0.00 0.00 3.25
631 637 1.591863 GCCGCCGTGAGATCTTACC 60.592 63.158 11.71 0.00 0.00 2.85
632 638 1.944676 CGCCGCCGTGAGATCTTAC 60.945 63.158 7.56 7.56 0.00 2.34
633 639 1.452953 ATCGCCGCCGTGAGATCTTA 61.453 55.000 0.00 0.00 35.54 2.10
634 640 2.786495 ATCGCCGCCGTGAGATCTT 61.786 57.895 0.00 0.00 35.54 2.40
635 641 3.219928 ATCGCCGCCGTGAGATCT 61.220 61.111 0.00 0.00 35.54 2.75
636 642 3.032609 CATCGCCGCCGTGAGATC 61.033 66.667 0.00 0.00 35.54 2.75
637 643 3.490793 CTCATCGCCGCCGTGAGAT 62.491 63.158 11.17 0.00 41.14 2.75
638 644 4.193334 CTCATCGCCGCCGTGAGA 62.193 66.667 11.17 0.00 41.14 3.27
639 645 3.490793 ATCTCATCGCCGCCGTGAG 62.491 63.158 10.61 10.61 40.58 3.51
640 646 3.484742 GATCTCATCGCCGCCGTGA 62.485 63.158 0.00 0.00 35.54 4.35
641 647 3.032609 GATCTCATCGCCGCCGTG 61.033 66.667 0.00 0.00 35.54 4.94
642 648 4.630785 CGATCTCATCGCCGCCGT 62.631 66.667 0.00 0.00 46.55 5.68
650 656 1.372748 CTCTGGCGGCGATCTCATC 60.373 63.158 12.98 0.00 0.00 2.92
651 657 2.733301 CTCTGGCGGCGATCTCAT 59.267 61.111 12.98 0.00 0.00 2.90
652 658 4.212913 GCTCTGGCGGCGATCTCA 62.213 66.667 12.98 1.45 0.00 3.27
653 659 4.959596 GGCTCTGGCGGCGATCTC 62.960 72.222 12.98 0.00 39.81 2.75
662 668 0.322187 TTAGGGTTTTCGGCTCTGGC 60.322 55.000 0.00 0.00 37.82 4.85
663 669 1.739067 CTTAGGGTTTTCGGCTCTGG 58.261 55.000 0.00 0.00 0.00 3.86
664 670 1.087501 GCTTAGGGTTTTCGGCTCTG 58.912 55.000 0.00 0.00 0.00 3.35
665 671 0.391263 CGCTTAGGGTTTTCGGCTCT 60.391 55.000 0.00 0.00 0.00 4.09
666 672 0.390735 TCGCTTAGGGTTTTCGGCTC 60.391 55.000 0.00 0.00 0.00 4.70
667 673 0.391263 CTCGCTTAGGGTTTTCGGCT 60.391 55.000 0.00 0.00 0.00 5.52
668 674 0.390735 TCTCGCTTAGGGTTTTCGGC 60.391 55.000 0.00 0.00 0.00 5.54
669 675 1.641577 CTCTCGCTTAGGGTTTTCGG 58.358 55.000 0.00 0.00 0.00 4.30
670 676 1.641577 CCTCTCGCTTAGGGTTTTCG 58.358 55.000 0.00 0.00 0.00 3.46
677 683 2.226912 CGAATCTACCCTCTCGCTTAGG 59.773 54.545 0.00 0.00 0.00 2.69
678 684 3.139850 TCGAATCTACCCTCTCGCTTAG 58.860 50.000 0.00 0.00 0.00 2.18
679 685 3.204306 TCGAATCTACCCTCTCGCTTA 57.796 47.619 0.00 0.00 0.00 3.09
680 686 2.054232 TCGAATCTACCCTCTCGCTT 57.946 50.000 0.00 0.00 0.00 4.68
681 687 2.156098 GATCGAATCTACCCTCTCGCT 58.844 52.381 0.00 0.00 0.00 4.93
682 688 1.135916 CGATCGAATCTACCCTCTCGC 60.136 57.143 10.26 0.00 0.00 5.03
683 689 2.414806 TCGATCGAATCTACCCTCTCG 58.585 52.381 16.99 0.00 0.00 4.04
684 690 4.066490 TCTTCGATCGAATCTACCCTCTC 58.934 47.826 29.22 0.00 33.28 3.20
685 691 4.088056 TCTTCGATCGAATCTACCCTCT 57.912 45.455 29.22 0.00 33.28 3.69
686 692 4.832590 TTCTTCGATCGAATCTACCCTC 57.167 45.455 29.22 0.00 33.28 4.30
687 693 5.593679 TTTTCTTCGATCGAATCTACCCT 57.406 39.130 29.22 0.00 33.28 4.34
714 720 1.359475 GACGGAGGGAGTACATCGC 59.641 63.158 0.00 0.00 41.11 4.58
715 721 1.783031 CGGACGGAGGGAGTACATCG 61.783 65.000 0.00 0.00 0.00 3.84
716 722 1.453762 CCGGACGGAGGGAGTACATC 61.454 65.000 4.40 0.00 37.50 3.06
717 723 1.455217 CCGGACGGAGGGAGTACAT 60.455 63.158 4.40 0.00 37.50 2.29
718 724 2.044650 CCGGACGGAGGGAGTACA 60.045 66.667 4.40 0.00 37.50 2.90
719 725 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
720 726 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
721 727 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
722 728 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
723 729 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
724 730 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
725 731 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
726 732 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
727 733 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
728 734 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
729 735 3.124636 CCTTTGACAAGTATTTCCGGACG 59.875 47.826 1.83 0.00 0.00 4.79
730 736 4.320870 TCCTTTGACAAGTATTTCCGGAC 58.679 43.478 1.83 0.00 0.00 4.79
731 737 4.627284 TCCTTTGACAAGTATTTCCGGA 57.373 40.909 0.00 0.00 0.00 5.14
732 738 5.414454 TCATTCCTTTGACAAGTATTTCCGG 59.586 40.000 0.00 0.00 0.00 5.14
733 739 6.494893 TCATTCCTTTGACAAGTATTTCCG 57.505 37.500 0.00 0.00 0.00 4.30
734 740 7.276438 GCATTCATTCCTTTGACAAGTATTTCC 59.724 37.037 0.00 0.00 0.00 3.13
735 741 7.814107 TGCATTCATTCCTTTGACAAGTATTTC 59.186 33.333 0.00 0.00 0.00 2.17
736 742 7.669427 TGCATTCATTCCTTTGACAAGTATTT 58.331 30.769 0.00 0.00 0.00 1.40
737 743 7.230849 TGCATTCATTCCTTTGACAAGTATT 57.769 32.000 0.00 0.00 0.00 1.89
738 744 6.839124 TGCATTCATTCCTTTGACAAGTAT 57.161 33.333 0.00 0.00 0.00 2.12
739 745 6.209192 ACATGCATTCATTCCTTTGACAAGTA 59.791 34.615 0.00 0.00 0.00 2.24
740 746 5.011329 ACATGCATTCATTCCTTTGACAAGT 59.989 36.000 0.00 0.00 0.00 3.16
741 747 5.475719 ACATGCATTCATTCCTTTGACAAG 58.524 37.500 0.00 0.00 0.00 3.16
742 748 5.471556 ACATGCATTCATTCCTTTGACAA 57.528 34.783 0.00 0.00 0.00 3.18
743 749 5.945191 TCTACATGCATTCATTCCTTTGACA 59.055 36.000 0.00 0.00 0.00 3.58
744 750 6.127925 TGTCTACATGCATTCATTCCTTTGAC 60.128 38.462 0.00 0.00 0.00 3.18
745 751 5.945191 TGTCTACATGCATTCATTCCTTTGA 59.055 36.000 0.00 0.00 0.00 2.69
746 752 6.198650 TGTCTACATGCATTCATTCCTTTG 57.801 37.500 0.00 0.00 0.00 2.77
747 753 8.701908 ATATGTCTACATGCATTCATTCCTTT 57.298 30.769 0.00 0.00 37.15 3.11
748 754 8.701908 AATATGTCTACATGCATTCATTCCTT 57.298 30.769 0.00 0.00 37.15 3.36
749 755 9.970553 ATAATATGTCTACATGCATTCATTCCT 57.029 29.630 0.00 0.00 37.15 3.36
757 763 9.881649 CCAGAACTATAATATGTCTACATGCAT 57.118 33.333 5.85 0.00 37.15 3.96
758 764 9.088987 TCCAGAACTATAATATGTCTACATGCA 57.911 33.333 5.85 0.00 37.15 3.96
776 782 9.699410 TGGATAAAAATGAATGTATCCAGAACT 57.301 29.630 7.08 0.00 44.47 3.01
782 788 9.410556 CGGAAATGGATAAAAATGAATGTATCC 57.589 33.333 0.00 0.00 41.59 2.59
783 789 9.965824 ACGGAAATGGATAAAAATGAATGTATC 57.034 29.630 0.00 0.00 0.00 2.24
784 790 9.748708 CACGGAAATGGATAAAAATGAATGTAT 57.251 29.630 0.00 0.00 0.00 2.29
785 791 8.961634 TCACGGAAATGGATAAAAATGAATGTA 58.038 29.630 0.00 0.00 0.00 2.29
786 792 7.759433 GTCACGGAAATGGATAAAAATGAATGT 59.241 33.333 0.00 0.00 0.00 2.71
787 793 7.758980 TGTCACGGAAATGGATAAAAATGAATG 59.241 33.333 0.00 0.00 0.00 2.67
788 794 7.835822 TGTCACGGAAATGGATAAAAATGAAT 58.164 30.769 0.00 0.00 0.00 2.57
789 795 7.220741 TGTCACGGAAATGGATAAAAATGAA 57.779 32.000 0.00 0.00 0.00 2.57
790 796 6.825944 TGTCACGGAAATGGATAAAAATGA 57.174 33.333 0.00 0.00 0.00 2.57
791 797 7.090173 ACTTGTCACGGAAATGGATAAAAATG 58.910 34.615 0.00 0.00 0.00 2.32
792 798 7.227049 ACTTGTCACGGAAATGGATAAAAAT 57.773 32.000 0.00 0.00 0.00 1.82
793 799 6.642707 ACTTGTCACGGAAATGGATAAAAA 57.357 33.333 0.00 0.00 0.00 1.94
794 800 7.747155 TTACTTGTCACGGAAATGGATAAAA 57.253 32.000 0.00 0.00 0.00 1.52
795 801 7.931578 ATTACTTGTCACGGAAATGGATAAA 57.068 32.000 0.00 0.00 0.00 1.40
796 802 7.827236 AGAATTACTTGTCACGGAAATGGATAA 59.173 33.333 0.00 0.00 0.00 1.75
797 803 7.279981 CAGAATTACTTGTCACGGAAATGGATA 59.720 37.037 0.00 0.00 0.00 2.59
798 804 6.094048 CAGAATTACTTGTCACGGAAATGGAT 59.906 38.462 0.00 0.00 0.00 3.41
799 805 5.411361 CAGAATTACTTGTCACGGAAATGGA 59.589 40.000 0.00 0.00 0.00 3.41
800 806 5.391950 CCAGAATTACTTGTCACGGAAATGG 60.392 44.000 0.00 0.00 0.00 3.16
801 807 5.411361 TCCAGAATTACTTGTCACGGAAATG 59.589 40.000 0.00 0.00 0.00 2.32
802 808 5.411669 GTCCAGAATTACTTGTCACGGAAAT 59.588 40.000 0.00 0.00 0.00 2.17
803 809 4.753107 GTCCAGAATTACTTGTCACGGAAA 59.247 41.667 0.00 0.00 0.00 3.13
804 810 4.312443 GTCCAGAATTACTTGTCACGGAA 58.688 43.478 0.00 0.00 0.00 4.30
805 811 3.613193 CGTCCAGAATTACTTGTCACGGA 60.613 47.826 0.00 0.00 0.00 4.69
806 812 2.666508 CGTCCAGAATTACTTGTCACGG 59.333 50.000 0.00 0.00 0.00 4.94
807 813 2.666508 CCGTCCAGAATTACTTGTCACG 59.333 50.000 0.00 0.00 0.00 4.35
808 814 3.921677 TCCGTCCAGAATTACTTGTCAC 58.078 45.455 0.00 0.00 0.00 3.67
809 815 3.056107 CCTCCGTCCAGAATTACTTGTCA 60.056 47.826 0.00 0.00 0.00 3.58
810 816 3.522553 CCTCCGTCCAGAATTACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
811 817 2.236395 CCCTCCGTCCAGAATTACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
812 818 2.500098 TCCCTCCGTCCAGAATTACTTG 59.500 50.000 0.00 0.00 0.00 3.16
813 819 2.766828 CTCCCTCCGTCCAGAATTACTT 59.233 50.000 0.00 0.00 0.00 2.24
814 820 2.292323 ACTCCCTCCGTCCAGAATTACT 60.292 50.000 0.00 0.00 0.00 2.24
815 821 2.108970 ACTCCCTCCGTCCAGAATTAC 58.891 52.381 0.00 0.00 0.00 1.89
816 822 2.544844 ACTCCCTCCGTCCAGAATTA 57.455 50.000 0.00 0.00 0.00 1.40
817 823 2.544844 TACTCCCTCCGTCCAGAATT 57.455 50.000 0.00 0.00 0.00 2.17
818 824 2.178106 AGATACTCCCTCCGTCCAGAAT 59.822 50.000 0.00 0.00 0.00 2.40
819 825 1.569548 AGATACTCCCTCCGTCCAGAA 59.430 52.381 0.00 0.00 0.00 3.02
820 826 1.223501 AGATACTCCCTCCGTCCAGA 58.776 55.000 0.00 0.00 0.00 3.86
821 827 2.553466 CCTAGATACTCCCTCCGTCCAG 60.553 59.091 0.00 0.00 0.00 3.86
822 828 1.424302 CCTAGATACTCCCTCCGTCCA 59.576 57.143 0.00 0.00 0.00 4.02
823 829 1.424684 ACCTAGATACTCCCTCCGTCC 59.575 57.143 0.00 0.00 0.00 4.79
824 830 2.955342 ACCTAGATACTCCCTCCGTC 57.045 55.000 0.00 0.00 0.00 4.79
825 831 3.072768 CAGTACCTAGATACTCCCTCCGT 59.927 52.174 0.00 0.00 32.92 4.69
826 832 3.559597 CCAGTACCTAGATACTCCCTCCG 60.560 56.522 0.00 0.00 32.92 4.63
827 833 3.398629 ACCAGTACCTAGATACTCCCTCC 59.601 52.174 0.00 0.00 32.92 4.30
828 834 4.727792 ACCAGTACCTAGATACTCCCTC 57.272 50.000 0.00 0.00 32.92 4.30
829 835 6.603110 TTAACCAGTACCTAGATACTCCCT 57.397 41.667 0.00 0.00 32.92 4.20
830 836 6.210984 CCATTAACCAGTACCTAGATACTCCC 59.789 46.154 0.00 0.00 32.92 4.30
831 837 6.210984 CCCATTAACCAGTACCTAGATACTCC 59.789 46.154 0.00 0.00 32.92 3.85
832 838 7.008941 TCCCATTAACCAGTACCTAGATACTC 58.991 42.308 0.00 0.00 32.92 2.59
833 839 6.930475 TCCCATTAACCAGTACCTAGATACT 58.070 40.000 0.00 0.00 35.72 2.12
834 840 7.440198 GTTCCCATTAACCAGTACCTAGATAC 58.560 42.308 0.00 0.00 0.00 2.24
835 841 6.266103 CGTTCCCATTAACCAGTACCTAGATA 59.734 42.308 0.00 0.00 0.00 1.98
836 842 5.070047 CGTTCCCATTAACCAGTACCTAGAT 59.930 44.000 0.00 0.00 0.00 1.98
837 843 4.403432 CGTTCCCATTAACCAGTACCTAGA 59.597 45.833 0.00 0.00 0.00 2.43
838 844 4.442472 CCGTTCCCATTAACCAGTACCTAG 60.442 50.000 0.00 0.00 0.00 3.02
839 845 3.451902 CCGTTCCCATTAACCAGTACCTA 59.548 47.826 0.00 0.00 0.00 3.08
840 846 2.237893 CCGTTCCCATTAACCAGTACCT 59.762 50.000 0.00 0.00 0.00 3.08
841 847 2.236893 TCCGTTCCCATTAACCAGTACC 59.763 50.000 0.00 0.00 0.00 3.34
858 864 1.227438 CGGTCAGGTGTTTGTCCGT 60.227 57.895 4.02 0.00 42.29 4.69
859 865 1.068417 TCGGTCAGGTGTTTGTCCG 59.932 57.895 5.54 5.54 46.45 4.79
860 866 1.219522 CGTCGGTCAGGTGTTTGTCC 61.220 60.000 0.00 0.00 0.00 4.02
861 867 0.249155 TCGTCGGTCAGGTGTTTGTC 60.249 55.000 0.00 0.00 0.00 3.18
862 868 0.249322 CTCGTCGGTCAGGTGTTTGT 60.249 55.000 0.00 0.00 0.00 2.83
1920 1956 4.131088 GCGACCTGTCCCGGAGAC 62.131 72.222 0.73 9.78 46.51 3.36
2268 2705 1.544724 TGCCAATGCAGAGTTAACCC 58.455 50.000 0.88 0.00 44.23 4.11
2696 3237 1.597302 CCGACCTCTCTCCGCGATA 60.597 63.158 8.23 0.00 0.00 2.92
2744 3285 2.560105 GCCAGAGGAGAAACATTTGCTT 59.440 45.455 0.00 0.00 0.00 3.91
2945 3486 4.479786 ACTTACAGAGATCCTTTCTGCC 57.520 45.455 9.71 0.00 44.63 4.85
3016 3598 1.412079 ATGCTGCCAAGTCCAACAAA 58.588 45.000 0.00 0.00 0.00 2.83
3142 5022 7.695480 TTTTATCCAATTCGAAGATGGAACA 57.305 32.000 28.85 20.35 45.75 3.18
3143 5023 8.190784 ACATTTTATCCAATTCGAAGATGGAAC 58.809 33.333 28.85 0.00 45.75 3.62
3144 5024 8.292444 ACATTTTATCCAATTCGAAGATGGAA 57.708 30.769 28.85 18.10 45.75 3.53
3145 5025 7.880160 ACATTTTATCCAATTCGAAGATGGA 57.120 32.000 27.88 27.88 46.60 3.41
3146 5026 8.810427 CAAACATTTTATCCAATTCGAAGATGG 58.190 33.333 21.13 21.13 35.04 3.51
3147 5027 9.357652 ACAAACATTTTATCCAATTCGAAGATG 57.642 29.630 3.35 5.38 35.04 2.90
3150 5030 9.840427 ACTACAAACATTTTATCCAATTCGAAG 57.160 29.630 3.35 0.00 0.00 3.79
3175 5055 9.220767 AGTGAGACTTGAAGAAATTATTGGTAC 57.779 33.333 0.00 0.00 0.00 3.34
3176 5056 9.793259 AAGTGAGACTTGAAGAAATTATTGGTA 57.207 29.630 0.00 0.00 37.00 3.25
3177 5057 8.697507 AAGTGAGACTTGAAGAAATTATTGGT 57.302 30.769 0.00 0.00 37.00 3.67
3222 5122 3.369892 CCACCAGACCTAAAGATGGAGTG 60.370 52.174 0.00 0.00 36.62 3.51
3223 5123 2.840651 CCACCAGACCTAAAGATGGAGT 59.159 50.000 0.00 0.00 36.62 3.85
3235 5135 0.831307 GACCATACTCCCACCAGACC 59.169 60.000 0.00 0.00 0.00 3.85
3268 5174 9.979578 TTGACAGCATAAATGAAATTGTAGTTT 57.020 25.926 0.00 0.00 36.10 2.66
3369 5387 4.102210 ACCATGCATCACTAGCAGTCTAAT 59.898 41.667 0.00 0.00 46.36 1.73
3378 5396 5.885230 TTTCTTTCACCATGCATCACTAG 57.115 39.130 0.00 0.00 0.00 2.57
3382 5400 5.068855 TGAACTTTTCTTTCACCATGCATCA 59.931 36.000 0.00 0.00 0.00 3.07
3383 5401 5.531634 TGAACTTTTCTTTCACCATGCATC 58.468 37.500 0.00 0.00 0.00 3.91
3400 5418 3.554337 CGGCACACCTACTAACTGAACTT 60.554 47.826 0.00 0.00 0.00 2.66
3476 5512 4.322198 CCATGAAGCAATTACAGCAAACCT 60.322 41.667 0.00 0.00 0.00 3.50
3514 5575 8.575565 AGTTGTATCACACGCTGTTATATAAG 57.424 34.615 0.00 0.00 0.00 1.73
3614 5677 2.178235 GGCCGCGAAGGTAATCACC 61.178 63.158 8.23 0.00 46.19 4.02
3682 5811 2.163818 TTAGGCACTGAACCTGAACG 57.836 50.000 3.94 0.00 41.52 3.95
3728 5857 2.046604 GCAAGGGGTACGGTGTCC 60.047 66.667 0.00 0.00 0.00 4.02
3741 5871 2.675056 GCCTGTCGACTGCTGCAAG 61.675 63.158 17.92 3.40 0.00 4.01
3804 5934 0.533755 AGGTGTGTTCTGCAGACTGC 60.534 55.000 18.03 20.86 45.29 4.40
3839 5969 3.613737 CCAAGTTTTGAGTTGCAGTTGTG 59.386 43.478 0.00 0.00 0.00 3.33
3875 6005 6.700960 TGAAGTTATGAACACAAATTGCCAAG 59.299 34.615 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.