Multiple sequence alignment - TraesCS3B01G502400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G502400 chr3B 100.000 3369 0 0 1 3369 746794719 746791351 0.000000e+00 6222.0
1 TraesCS3B01G502400 chr3B 89.227 854 82 5 948 1800 744591013 744591857 0.000000e+00 1059.0
2 TraesCS3B01G502400 chr3B 89.227 854 82 5 948 1800 746855945 746855101 0.000000e+00 1059.0
3 TraesCS3B01G502400 chr3B 84.266 858 108 17 949 1798 747094151 747094989 0.000000e+00 811.0
4 TraesCS3B01G502400 chr3B 81.210 942 147 19 949 1864 744847584 744848521 0.000000e+00 732.0
5 TraesCS3B01G502400 chr3B 89.329 581 52 5 1812 2388 744592376 744592950 0.000000e+00 721.0
6 TraesCS3B01G502400 chr3B 81.984 877 132 16 949 1801 744729011 744729885 0.000000e+00 721.0
7 TraesCS3B01G502400 chr3B 89.024 574 53 5 1819 2388 746854579 746854012 0.000000e+00 702.0
8 TraesCS3B01G502400 chr3B 86.469 606 72 8 948 1545 745474437 745473834 0.000000e+00 656.0
9 TraesCS3B01G502400 chr3B 85.575 617 74 8 949 1550 747384808 747385424 1.710000e-177 632.0
10 TraesCS3B01G502400 chr3B 83.757 511 71 10 1873 2373 746286471 746286979 1.090000e-129 473.0
11 TraesCS3B01G502400 chr3B 82.779 511 76 9 1873 2373 744848588 744849096 2.380000e-121 446.0
12 TraesCS3B01G502400 chr3B 84.719 445 59 8 1933 2371 744339123 744338682 1.440000e-118 436.0
13 TraesCS3B01G502400 chr3B 83.512 467 66 9 1933 2390 745473288 745472824 3.110000e-115 425.0
14 TraesCS3B01G502400 chr3B 87.539 321 8 10 3043 3353 746269028 746269326 3.220000e-90 342.0
15 TraesCS3B01G502400 chr3B 88.755 249 17 5 2631 2877 746268428 746268667 9.140000e-76 294.0
16 TraesCS3B01G502400 chr3B 92.547 161 12 0 1641 1801 746847869 746848029 7.270000e-57 231.0
17 TraesCS3B01G502400 chr3B 88.770 187 21 0 1615 1801 745449278 745449092 2.610000e-56 230.0
18 TraesCS3B01G502400 chr3B 89.697 165 17 0 1637 1801 744511613 744511449 9.470000e-51 211.0
19 TraesCS3B01G502400 chr3B 88.068 176 20 1 1627 1801 745473740 745473565 1.230000e-49 207.0
20 TraesCS3B01G502400 chr3B 87.500 176 21 1 1627 1801 745243762 745243587 5.700000e-48 202.0
21 TraesCS3B01G502400 chr3B 87.006 177 23 0 1625 1801 747385582 747385758 2.050000e-47 200.0
22 TraesCS3B01G502400 chr3B 91.379 116 6 3 2861 2973 746268686 746268800 4.500000e-34 156.0
23 TraesCS3B01G502400 chr3B 83.898 118 12 6 840 955 746795081 746795193 4.600000e-19 106.0
24 TraesCS3B01G502400 chr7D 94.953 951 34 5 1 948 152089608 152088669 0.000000e+00 1478.0
25 TraesCS3B01G502400 chr3D 95.902 854 35 0 948 1801 560478204 560479057 0.000000e+00 1384.0
26 TraesCS3B01G502400 chr3D 93.252 741 38 5 1805 2542 560479161 560479892 0.000000e+00 1081.0
27 TraesCS3B01G502400 chr3D 88.876 854 71 6 948 1800 560331564 560332394 0.000000e+00 1029.0
28 TraesCS3B01G502400 chr3D 84.088 861 118 14 949 1801 560827306 560828155 0.000000e+00 813.0
29 TraesCS3B01G502400 chr3D 83.882 881 107 19 949 1801 560640541 560641414 0.000000e+00 808.0
30 TraesCS3B01G502400 chr3D 85.754 716 82 14 1819 2523 560333012 560333718 0.000000e+00 739.0
31 TraesCS3B01G502400 chr3D 90.224 491 48 0 949 1439 560269166 560268676 2.830000e-180 641.0
32 TraesCS3B01G502400 chr3D 84.142 618 81 12 949 1550 560867143 560867759 1.740000e-162 582.0
33 TraesCS3B01G502400 chr3D 94.395 339 17 1 2541 2877 560479938 560480276 1.390000e-143 520.0
34 TraesCS3B01G502400 chr3D 83.562 511 72 9 1873 2373 560553062 560553570 5.090000e-128 468.0
35 TraesCS3B01G502400 chr3D 80.808 297 43 8 656 950 328394996 328394712 1.570000e-53 220.0
36 TraesCS3B01G502400 chr3D 89.032 155 9 3 2877 3023 560480314 560480468 5.740000e-43 185.0
37 TraesCS3B01G502400 chr3D 100.000 36 0 0 3043 3078 560480552 560480587 2.170000e-07 67.6
38 TraesCS3B01G502400 chr3A 83.082 863 116 22 948 1798 629056919 629057763 0.000000e+00 758.0
39 TraesCS3B01G502400 chr3A 83.949 623 78 9 949 1550 696344433 696343812 8.110000e-161 577.0
40 TraesCS3B01G502400 chr1B 80.744 457 75 12 103 553 69560535 69560086 8.950000e-91 344.0
41 TraesCS3B01G502400 chr1D 76.970 495 93 12 119 611 32742543 32742068 2.580000e-66 263.0
42 TraesCS3B01G502400 chrUn 87.500 176 21 1 1627 1801 301718286 301718461 5.700000e-48 202.0
43 TraesCS3B01G502400 chr4D 81.373 204 34 4 654 855 506128121 506127920 2.690000e-36 163.0
44 TraesCS3B01G502400 chr4B 83.243 185 23 6 768 949 245546844 245547023 2.690000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G502400 chr3B 746791351 746794719 3368 True 6222.000000 6222 100.000000 1 3369 1 chr3B.!!$R5 3368
1 TraesCS3B01G502400 chr3B 744591013 744592950 1937 False 890.000000 1059 89.278000 948 2388 2 chr3B.!!$F6 1440
2 TraesCS3B01G502400 chr3B 746854012 746855945 1933 True 880.500000 1059 89.125500 948 2388 2 chr3B.!!$R7 1440
3 TraesCS3B01G502400 chr3B 747094151 747094989 838 False 811.000000 811 84.266000 949 1798 1 chr3B.!!$F5 849
4 TraesCS3B01G502400 chr3B 744729011 744729885 874 False 721.000000 721 81.984000 949 1801 1 chr3B.!!$F1 852
5 TraesCS3B01G502400 chr3B 744847584 744849096 1512 False 589.000000 732 81.994500 949 2373 2 chr3B.!!$F7 1424
6 TraesCS3B01G502400 chr3B 746286471 746286979 508 False 473.000000 473 83.757000 1873 2373 1 chr3B.!!$F2 500
7 TraesCS3B01G502400 chr3B 745472824 745474437 1613 True 429.333333 656 86.016333 948 2390 3 chr3B.!!$R6 1442
8 TraesCS3B01G502400 chr3B 747384808 747385758 950 False 416.000000 632 86.290500 949 1801 2 chr3B.!!$F9 852
9 TraesCS3B01G502400 chr3B 746268428 746269326 898 False 264.000000 342 89.224333 2631 3353 3 chr3B.!!$F8 722
10 TraesCS3B01G502400 chr7D 152088669 152089608 939 True 1478.000000 1478 94.953000 1 948 1 chr7D.!!$R1 947
11 TraesCS3B01G502400 chr3D 560331564 560333718 2154 False 884.000000 1029 87.315000 948 2523 2 chr3D.!!$F5 1575
12 TraesCS3B01G502400 chr3D 560827306 560828155 849 False 813.000000 813 84.088000 949 1801 1 chr3D.!!$F3 852
13 TraesCS3B01G502400 chr3D 560640541 560641414 873 False 808.000000 808 83.882000 949 1801 1 chr3D.!!$F2 852
14 TraesCS3B01G502400 chr3D 560478204 560480587 2383 False 647.520000 1384 94.516200 948 3078 5 chr3D.!!$F6 2130
15 TraesCS3B01G502400 chr3D 560867143 560867759 616 False 582.000000 582 84.142000 949 1550 1 chr3D.!!$F4 601
16 TraesCS3B01G502400 chr3D 560553062 560553570 508 False 468.000000 468 83.562000 1873 2373 1 chr3D.!!$F1 500
17 TraesCS3B01G502400 chr3A 629056919 629057763 844 False 758.000000 758 83.082000 948 1798 1 chr3A.!!$F1 850
18 TraesCS3B01G502400 chr3A 696343812 696344433 621 True 577.000000 577 83.949000 949 1550 1 chr3A.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 407 0.032515 TGCGAAGAGGGAGGATACCA 60.033 55.0 0.00 0.00 37.17 3.25 F
527 530 0.033601 GAGAGAGCACAGAGGAGGGA 60.034 60.0 0.00 0.00 0.00 4.20 F
688 691 0.035056 AATCTGGTGTGCCTGCTACC 60.035 55.0 8.55 8.55 34.18 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 1714 0.242017 GCAATGCACCCAAGACAGAC 59.758 55.000 0.00 0.0 0.00 3.51 R
1955 2890 0.824759 GACTCCTCAAGTATGCGGGT 59.175 55.000 0.00 0.0 38.74 5.28 R
2440 3606 2.038033 AGCATTTCACAGCTTGCCAAAT 59.962 40.909 2.23 0.0 38.01 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 122 1.069513 TGTCTTGTAGTCAACGTGGGG 59.930 52.381 0.00 0.00 0.00 4.96
239 242 4.827087 AGATGCTCTGCGGCACCG 62.827 66.667 4.30 4.30 45.36 4.94
330 333 2.516888 CGAGGTGTGGTCAGGGGTT 61.517 63.158 0.00 0.00 0.00 4.11
360 363 0.394216 CCATGACAAGGCCGATTCCA 60.394 55.000 0.00 0.00 0.00 3.53
363 366 0.036388 TGACAAGGCCGATTCCAGAC 60.036 55.000 0.00 0.00 0.00 3.51
364 367 0.036388 GACAAGGCCGATTCCAGACA 60.036 55.000 0.00 0.00 0.00 3.41
365 368 0.036010 ACAAGGCCGATTCCAGACAG 60.036 55.000 0.00 0.00 0.00 3.51
366 369 1.078143 AAGGCCGATTCCAGACAGC 60.078 57.895 0.00 0.00 0.00 4.40
367 370 2.514824 GGCCGATTCCAGACAGCC 60.515 66.667 0.00 0.00 0.00 4.85
368 371 2.586792 GCCGATTCCAGACAGCCT 59.413 61.111 0.00 0.00 0.00 4.58
369 372 1.686325 GGCCGATTCCAGACAGCCTA 61.686 60.000 0.00 0.00 37.42 3.93
370 373 0.249657 GCCGATTCCAGACAGCCTAG 60.250 60.000 0.00 0.00 0.00 3.02
371 374 1.115467 CCGATTCCAGACAGCCTAGT 58.885 55.000 0.00 0.00 0.00 2.57
372 375 1.067821 CCGATTCCAGACAGCCTAGTC 59.932 57.143 0.00 0.00 38.81 2.59
373 376 1.751351 CGATTCCAGACAGCCTAGTCA 59.249 52.381 4.64 0.00 40.98 3.41
374 377 2.166459 CGATTCCAGACAGCCTAGTCAA 59.834 50.000 4.64 0.00 40.98 3.18
375 378 3.368427 CGATTCCAGACAGCCTAGTCAAA 60.368 47.826 4.64 0.00 40.98 2.69
376 379 4.681781 CGATTCCAGACAGCCTAGTCAAAT 60.682 45.833 4.64 2.02 40.98 2.32
377 380 4.640771 TTCCAGACAGCCTAGTCAAATT 57.359 40.909 4.64 0.00 40.98 1.82
378 381 3.942829 TCCAGACAGCCTAGTCAAATTG 58.057 45.455 4.64 0.00 40.98 2.32
379 382 3.582647 TCCAGACAGCCTAGTCAAATTGA 59.417 43.478 0.00 0.00 40.98 2.57
380 383 4.225942 TCCAGACAGCCTAGTCAAATTGAT 59.774 41.667 0.00 0.00 40.98 2.57
381 384 4.946157 CCAGACAGCCTAGTCAAATTGATT 59.054 41.667 0.00 0.00 40.98 2.57
382 385 5.416952 CCAGACAGCCTAGTCAAATTGATTT 59.583 40.000 0.00 0.00 40.98 2.17
383 386 6.071728 CCAGACAGCCTAGTCAAATTGATTTT 60.072 38.462 0.00 0.00 40.98 1.82
384 387 6.805271 CAGACAGCCTAGTCAAATTGATTTTG 59.195 38.462 0.00 0.00 45.08 2.44
385 388 6.491403 AGACAGCCTAGTCAAATTGATTTTGT 59.509 34.615 0.00 0.00 44.25 2.83
386 389 6.449698 ACAGCCTAGTCAAATTGATTTTGTG 58.550 36.000 0.00 0.00 44.25 3.33
387 390 5.346822 CAGCCTAGTCAAATTGATTTTGTGC 59.653 40.000 0.00 0.00 44.25 4.57
388 391 4.324402 GCCTAGTCAAATTGATTTTGTGCG 59.676 41.667 0.00 0.00 44.25 5.34
389 392 5.698832 CCTAGTCAAATTGATTTTGTGCGA 58.301 37.500 0.00 0.00 44.25 5.10
390 393 6.148948 CCTAGTCAAATTGATTTTGTGCGAA 58.851 36.000 0.00 0.00 44.25 4.70
391 394 6.306356 CCTAGTCAAATTGATTTTGTGCGAAG 59.694 38.462 0.00 0.00 44.25 3.79
392 395 5.830912 AGTCAAATTGATTTTGTGCGAAGA 58.169 33.333 0.00 0.00 44.25 2.87
393 396 5.916883 AGTCAAATTGATTTTGTGCGAAGAG 59.083 36.000 0.00 0.00 44.25 2.85
394 397 5.117592 GTCAAATTGATTTTGTGCGAAGAGG 59.882 40.000 0.00 0.00 44.25 3.69
395 398 3.855689 ATTGATTTTGTGCGAAGAGGG 57.144 42.857 0.00 0.00 0.00 4.30
396 399 2.559698 TGATTTTGTGCGAAGAGGGA 57.440 45.000 0.00 0.00 0.00 4.20
397 400 2.426522 TGATTTTGTGCGAAGAGGGAG 58.573 47.619 0.00 0.00 0.00 4.30
398 401 1.740025 GATTTTGTGCGAAGAGGGAGG 59.260 52.381 0.00 0.00 0.00 4.30
399 402 0.762418 TTTTGTGCGAAGAGGGAGGA 59.238 50.000 0.00 0.00 0.00 3.71
400 403 0.984230 TTTGTGCGAAGAGGGAGGAT 59.016 50.000 0.00 0.00 0.00 3.24
401 404 1.860641 TTGTGCGAAGAGGGAGGATA 58.139 50.000 0.00 0.00 0.00 2.59
402 405 1.112113 TGTGCGAAGAGGGAGGATAC 58.888 55.000 0.00 0.00 0.00 2.24
403 406 0.389757 GTGCGAAGAGGGAGGATACC 59.610 60.000 0.00 0.00 37.17 2.73
404 407 0.032515 TGCGAAGAGGGAGGATACCA 60.033 55.000 0.00 0.00 37.17 3.25
405 408 1.343069 GCGAAGAGGGAGGATACCAT 58.657 55.000 0.00 0.00 37.17 3.55
406 409 1.001406 GCGAAGAGGGAGGATACCATG 59.999 57.143 0.00 0.00 37.17 3.66
407 410 1.620819 CGAAGAGGGAGGATACCATGG 59.379 57.143 11.19 11.19 37.17 3.66
408 411 1.349357 GAAGAGGGAGGATACCATGGC 59.651 57.143 13.04 0.00 37.17 4.40
409 412 0.268869 AGAGGGAGGATACCATGGCA 59.731 55.000 13.04 0.00 37.17 4.92
410 413 0.689623 GAGGGAGGATACCATGGCAG 59.310 60.000 13.04 0.00 37.17 4.85
411 414 0.769776 AGGGAGGATACCATGGCAGG 60.770 60.000 13.04 0.00 37.17 4.85
412 415 1.763770 GGAGGATACCATGGCAGGG 59.236 63.158 18.06 18.06 37.17 4.45
413 416 1.073897 GAGGATACCATGGCAGGGC 59.926 63.158 19.71 1.37 37.17 5.19
414 417 1.386485 AGGATACCATGGCAGGGCT 60.386 57.895 19.71 5.73 37.17 5.19
415 418 0.104462 AGGATACCATGGCAGGGCTA 60.104 55.000 19.71 10.33 37.17 3.93
416 419 0.326264 GGATACCATGGCAGGGCTAG 59.674 60.000 19.71 0.00 0.00 3.42
417 420 0.322008 GATACCATGGCAGGGCTAGC 60.322 60.000 19.71 6.04 0.00 3.42
418 421 0.769776 ATACCATGGCAGGGCTAGCT 60.770 55.000 19.71 0.00 0.00 3.32
419 422 1.699054 TACCATGGCAGGGCTAGCTG 61.699 60.000 19.71 7.17 0.00 4.24
420 423 2.749584 CCATGGCAGGGCTAGCTGA 61.750 63.158 15.72 0.00 0.00 4.26
421 424 1.525535 CATGGCAGGGCTAGCTGAC 60.526 63.158 15.72 8.91 0.00 3.51
422 425 1.997311 ATGGCAGGGCTAGCTGACA 60.997 57.895 14.34 14.34 43.38 3.58
423 426 1.351080 ATGGCAGGGCTAGCTGACAT 61.351 55.000 17.38 17.38 43.26 3.06
424 427 1.525535 GGCAGGGCTAGCTGACATG 60.526 63.158 15.72 7.22 38.75 3.21
425 428 1.524002 GCAGGGCTAGCTGACATGA 59.476 57.895 15.72 0.00 37.76 3.07
426 429 0.813210 GCAGGGCTAGCTGACATGAC 60.813 60.000 15.72 0.00 37.76 3.06
427 430 0.529337 CAGGGCTAGCTGACATGACG 60.529 60.000 15.72 0.00 37.76 4.35
428 431 1.227380 GGGCTAGCTGACATGACGG 60.227 63.158 15.72 0.00 0.00 4.79
429 432 1.884926 GGCTAGCTGACATGACGGC 60.885 63.158 19.51 19.51 41.86 5.68
430 433 2.233654 GCTAGCTGACATGACGGCG 61.234 63.158 20.62 4.80 45.57 6.46
431 434 1.139734 CTAGCTGACATGACGGCGT 59.860 57.895 14.65 14.65 45.57 5.68
432 435 0.458543 CTAGCTGACATGACGGCGTT 60.459 55.000 16.19 9.20 45.57 4.84
433 436 0.735978 TAGCTGACATGACGGCGTTG 60.736 55.000 16.19 12.60 45.57 4.10
434 437 2.317609 GCTGACATGACGGCGTTGT 61.318 57.895 16.19 16.35 32.46 3.32
435 438 1.492873 CTGACATGACGGCGTTGTG 59.507 57.895 20.78 20.06 0.00 3.33
436 439 0.943835 CTGACATGACGGCGTTGTGA 60.944 55.000 20.78 12.40 0.00 3.58
437 440 0.943835 TGACATGACGGCGTTGTGAG 60.944 55.000 20.78 9.31 0.00 3.51
438 441 0.666274 GACATGACGGCGTTGTGAGA 60.666 55.000 20.78 0.00 0.00 3.27
439 442 0.944311 ACATGACGGCGTTGTGAGAC 60.944 55.000 25.34 8.82 0.00 3.36
440 443 0.667487 CATGACGGCGTTGTGAGACT 60.667 55.000 16.19 0.00 0.00 3.24
441 444 0.388649 ATGACGGCGTTGTGAGACTC 60.389 55.000 16.19 0.00 0.00 3.36
442 445 2.050351 ACGGCGTTGTGAGACTCG 60.050 61.111 6.77 0.00 0.00 4.18
443 446 2.805353 CGGCGTTGTGAGACTCGG 60.805 66.667 0.00 0.00 0.00 4.63
444 447 3.112709 GGCGTTGTGAGACTCGGC 61.113 66.667 0.00 0.00 41.00 5.54
445 448 3.112709 GCGTTGTGAGACTCGGCC 61.113 66.667 0.00 0.00 0.00 6.13
446 449 2.805353 CGTTGTGAGACTCGGCCG 60.805 66.667 22.12 22.12 0.00 6.13
447 450 2.338984 GTTGTGAGACTCGGCCGT 59.661 61.111 27.15 6.47 0.00 5.68
448 451 1.300697 GTTGTGAGACTCGGCCGTT 60.301 57.895 27.15 13.97 0.00 4.44
449 452 1.300620 TTGTGAGACTCGGCCGTTG 60.301 57.895 27.15 21.04 0.00 4.10
450 453 2.432628 GTGAGACTCGGCCGTTGG 60.433 66.667 27.15 18.37 0.00 3.77
463 466 2.045926 GTTGGCCACGAGCTCCAT 60.046 61.111 3.88 0.00 43.05 3.41
464 467 2.046023 TTGGCCACGAGCTCCATG 60.046 61.111 3.88 6.90 43.05 3.66
465 468 2.592032 TTGGCCACGAGCTCCATGA 61.592 57.895 3.88 0.00 43.05 3.07
466 469 2.202987 GGCCACGAGCTCCATGAG 60.203 66.667 8.47 0.00 43.05 2.90
467 470 2.581354 GCCACGAGCTCCATGAGT 59.419 61.111 8.47 0.00 38.99 3.41
468 471 1.812922 GCCACGAGCTCCATGAGTG 60.813 63.158 8.47 9.80 38.99 3.51
470 473 1.153489 CACGAGCTCCATGAGTGGG 60.153 63.158 8.47 0.00 46.06 4.61
471 474 2.202987 CGAGCTCCATGAGTGGGC 60.203 66.667 8.47 0.00 46.06 5.36
472 475 2.202987 GAGCTCCATGAGTGGGCG 60.203 66.667 0.87 0.00 46.06 6.13
473 476 3.746949 GAGCTCCATGAGTGGGCGG 62.747 68.421 0.87 0.00 46.06 6.13
504 507 4.254709 TGGAGCGCCACTGCAACT 62.255 61.111 4.49 0.00 44.73 3.16
505 508 2.980233 GGAGCGCCACTGCAACTT 60.980 61.111 2.29 0.00 36.57 2.66
506 509 2.253452 GAGCGCCACTGCAACTTG 59.747 61.111 2.29 0.00 37.32 3.16
507 510 3.886329 GAGCGCCACTGCAACTTGC 62.886 63.158 2.29 6.82 45.29 4.01
516 519 3.957260 GCAACTTGCGAGAGAGCA 58.043 55.556 8.31 0.00 46.54 4.26
522 525 3.282271 TGCGAGAGAGCACAGAGG 58.718 61.111 0.00 0.00 42.92 3.69
523 526 1.303643 TGCGAGAGAGCACAGAGGA 60.304 57.895 0.00 0.00 42.92 3.71
524 527 1.311651 TGCGAGAGAGCACAGAGGAG 61.312 60.000 0.00 0.00 42.92 3.69
525 528 2.003658 GCGAGAGAGCACAGAGGAGG 62.004 65.000 0.00 0.00 37.05 4.30
526 529 1.383456 CGAGAGAGCACAGAGGAGGG 61.383 65.000 0.00 0.00 0.00 4.30
527 530 0.033601 GAGAGAGCACAGAGGAGGGA 60.034 60.000 0.00 0.00 0.00 4.20
528 531 0.324275 AGAGAGCACAGAGGAGGGAC 60.324 60.000 0.00 0.00 0.00 4.46
529 532 0.613292 GAGAGCACAGAGGAGGGACA 60.613 60.000 0.00 0.00 0.00 4.02
530 533 0.614415 AGAGCACAGAGGAGGGACAG 60.614 60.000 0.00 0.00 0.00 3.51
531 534 0.613292 GAGCACAGAGGAGGGACAGA 60.613 60.000 0.00 0.00 0.00 3.41
532 535 0.614415 AGCACAGAGGAGGGACAGAG 60.614 60.000 0.00 0.00 0.00 3.35
533 536 1.612395 GCACAGAGGAGGGACAGAGG 61.612 65.000 0.00 0.00 0.00 3.69
534 537 0.975040 CACAGAGGAGGGACAGAGGG 60.975 65.000 0.00 0.00 0.00 4.30
535 538 2.063378 CAGAGGAGGGACAGAGGGC 61.063 68.421 0.00 0.00 0.00 5.19
536 539 3.151022 GAGGAGGGACAGAGGGCG 61.151 72.222 0.00 0.00 0.00 6.13
537 540 3.966930 GAGGAGGGACAGAGGGCGT 62.967 68.421 0.00 0.00 0.00 5.68
538 541 3.775654 GGAGGGACAGAGGGCGTG 61.776 72.222 0.00 0.00 0.00 5.34
539 542 3.775654 GAGGGACAGAGGGCGTGG 61.776 72.222 0.00 0.00 0.00 4.94
558 561 3.760035 GGCGCACGGAGGAAGAGA 61.760 66.667 10.83 0.00 0.00 3.10
559 562 2.261671 GCGCACGGAGGAAGAGAA 59.738 61.111 0.30 0.00 0.00 2.87
560 563 1.374252 GCGCACGGAGGAAGAGAAA 60.374 57.895 0.30 0.00 0.00 2.52
561 564 1.355066 GCGCACGGAGGAAGAGAAAG 61.355 60.000 0.30 0.00 0.00 2.62
562 565 0.737715 CGCACGGAGGAAGAGAAAGG 60.738 60.000 0.00 0.00 0.00 3.11
563 566 0.321996 GCACGGAGGAAGAGAAAGGT 59.678 55.000 0.00 0.00 0.00 3.50
564 567 1.673329 GCACGGAGGAAGAGAAAGGTC 60.673 57.143 0.00 0.00 0.00 3.85
565 568 0.889306 ACGGAGGAAGAGAAAGGTCG 59.111 55.000 0.00 0.00 0.00 4.79
566 569 1.174783 CGGAGGAAGAGAAAGGTCGA 58.825 55.000 0.00 0.00 0.00 4.20
567 570 1.133407 CGGAGGAAGAGAAAGGTCGAG 59.867 57.143 0.00 0.00 0.00 4.04
568 571 1.134936 GGAGGAAGAGAAAGGTCGAGC 60.135 57.143 6.48 6.48 0.00 5.03
569 572 0.528470 AGGAAGAGAAAGGTCGAGCG 59.472 55.000 9.28 0.00 0.00 5.03
570 573 1.079317 GGAAGAGAAAGGTCGAGCGC 61.079 60.000 9.28 0.00 0.00 5.92
571 574 1.406970 GAAGAGAAAGGTCGAGCGCG 61.407 60.000 9.28 2.41 39.35 6.86
572 575 2.820767 AAGAGAAAGGTCGAGCGCGG 62.821 60.000 10.69 0.00 38.28 6.46
573 576 3.338126 GAGAAAGGTCGAGCGCGGA 62.338 63.158 10.69 0.00 38.28 5.54
574 577 2.881352 GAAAGGTCGAGCGCGGAG 60.881 66.667 10.69 0.00 38.28 4.63
575 578 3.338126 GAAAGGTCGAGCGCGGAGA 62.338 63.158 10.69 0.00 38.28 3.71
576 579 3.628280 AAAGGTCGAGCGCGGAGAC 62.628 63.158 19.55 19.55 38.28 3.36
578 581 3.200593 GGTCGAGCGCGGAGACTA 61.201 66.667 24.11 0.00 38.28 2.59
579 582 2.325166 GTCGAGCGCGGAGACTAG 59.675 66.667 20.15 0.00 38.28 2.57
580 583 2.895865 TCGAGCGCGGAGACTAGG 60.896 66.667 10.69 0.00 38.28 3.02
581 584 4.615834 CGAGCGCGGAGACTAGGC 62.616 72.222 8.83 0.00 0.00 3.93
585 588 2.278013 CGCGGAGACTAGGCGTTC 60.278 66.667 0.00 0.00 44.52 3.95
586 589 2.278013 GCGGAGACTAGGCGTTCG 60.278 66.667 0.00 0.00 0.00 3.95
587 590 2.408022 CGGAGACTAGGCGTTCGG 59.592 66.667 0.00 0.00 0.00 4.30
588 591 2.104530 GGAGACTAGGCGTTCGGC 59.895 66.667 10.65 10.65 42.51 5.54
589 592 2.278013 GAGACTAGGCGTTCGGCG 60.278 66.667 12.57 0.00 44.92 6.46
590 593 3.753070 GAGACTAGGCGTTCGGCGG 62.753 68.421 7.21 11.77 44.92 6.13
633 636 3.680786 CTCGACAGCGGTGGGTCA 61.681 66.667 20.20 0.00 38.28 4.02
634 637 3.220999 CTCGACAGCGGTGGGTCAA 62.221 63.158 20.20 0.00 38.28 3.18
635 638 3.041940 CGACAGCGGTGGGTCAAC 61.042 66.667 20.20 2.32 33.66 3.18
636 639 2.668550 GACAGCGGTGGGTCAACC 60.669 66.667 20.20 0.00 40.81 3.77
649 652 4.620723 TGGGTCAACCATGTAGTAGATCT 58.379 43.478 0.00 0.00 46.80 2.75
650 653 4.405680 TGGGTCAACCATGTAGTAGATCTG 59.594 45.833 5.18 0.00 46.80 2.90
651 654 4.406003 GGGTCAACCATGTAGTAGATCTGT 59.594 45.833 5.18 0.00 39.85 3.41
652 655 5.597182 GGGTCAACCATGTAGTAGATCTGTA 59.403 44.000 5.18 0.00 39.85 2.74
653 656 6.239064 GGGTCAACCATGTAGTAGATCTGTAG 60.239 46.154 5.18 0.00 39.85 2.74
654 657 6.546403 GGTCAACCATGTAGTAGATCTGTAGA 59.454 42.308 5.18 0.00 35.64 2.59
655 658 7.231722 GGTCAACCATGTAGTAGATCTGTAGAT 59.768 40.741 5.18 0.00 35.00 1.98
656 659 8.079203 GTCAACCATGTAGTAGATCTGTAGATG 58.921 40.741 5.18 10.57 34.37 2.90
657 660 6.582677 ACCATGTAGTAGATCTGTAGATGC 57.417 41.667 5.18 0.00 34.37 3.91
658 661 6.071320 ACCATGTAGTAGATCTGTAGATGCA 58.929 40.000 5.18 0.00 34.37 3.96
659 662 6.723515 ACCATGTAGTAGATCTGTAGATGCAT 59.276 38.462 5.18 0.00 34.37 3.96
660 663 7.093988 ACCATGTAGTAGATCTGTAGATGCATC 60.094 40.741 19.37 19.37 34.37 3.91
661 664 6.487689 TGTAGTAGATCTGTAGATGCATCG 57.512 41.667 20.67 7.00 34.37 3.84
662 665 5.412904 TGTAGTAGATCTGTAGATGCATCGG 59.587 44.000 20.67 12.23 34.37 4.18
663 666 3.761218 AGTAGATCTGTAGATGCATCGGG 59.239 47.826 20.67 11.91 34.37 5.14
664 667 1.274728 AGATCTGTAGATGCATCGGGC 59.725 52.381 20.67 14.60 45.13 6.13
665 668 1.274728 GATCTGTAGATGCATCGGGCT 59.725 52.381 20.67 6.23 45.15 5.19
666 669 0.390492 TCTGTAGATGCATCGGGCTG 59.610 55.000 20.67 16.69 45.15 4.85
667 670 1.226686 CTGTAGATGCATCGGGCTGC 61.227 60.000 20.67 7.83 45.15 5.25
668 671 1.963338 GTAGATGCATCGGGCTGCC 60.963 63.158 20.67 11.05 45.15 4.85
669 672 2.442534 TAGATGCATCGGGCTGCCA 61.443 57.895 22.05 0.00 45.15 4.92
670 673 1.981951 TAGATGCATCGGGCTGCCAA 61.982 55.000 22.05 8.34 45.15 4.52
671 674 2.123597 ATGCATCGGGCTGCCAAT 60.124 55.556 22.05 10.50 45.15 3.16
672 675 2.138656 GATGCATCGGGCTGCCAATC 62.139 60.000 22.05 9.10 45.15 2.67
673 676 2.517875 GCATCGGGCTGCCAATCT 60.518 61.111 22.05 0.00 40.25 2.40
674 677 2.842256 GCATCGGGCTGCCAATCTG 61.842 63.158 22.05 12.54 40.25 2.90
675 678 2.191513 CATCGGGCTGCCAATCTGG 61.192 63.158 22.05 0.31 41.55 3.86
676 679 2.683465 ATCGGGCTGCCAATCTGGT 61.683 57.895 22.05 0.00 40.46 4.00
677 680 2.898920 ATCGGGCTGCCAATCTGGTG 62.899 60.000 22.05 0.00 40.46 4.17
678 681 2.036256 GGGCTGCCAATCTGGTGT 59.964 61.111 22.05 0.00 40.46 4.16
679 682 2.345760 GGGCTGCCAATCTGGTGTG 61.346 63.158 22.05 0.00 40.46 3.82
680 683 2.570181 GCTGCCAATCTGGTGTGC 59.430 61.111 0.00 0.00 40.46 4.57
681 684 2.998279 GCTGCCAATCTGGTGTGCC 61.998 63.158 0.00 0.00 40.46 5.01
682 685 1.303888 CTGCCAATCTGGTGTGCCT 60.304 57.895 0.00 0.00 40.46 4.75
683 686 1.592400 CTGCCAATCTGGTGTGCCTG 61.592 60.000 0.00 0.00 40.46 4.85
684 687 2.998279 GCCAATCTGGTGTGCCTGC 61.998 63.158 0.00 0.00 40.46 4.85
685 688 1.303888 CCAATCTGGTGTGCCTGCT 60.304 57.895 0.00 0.00 34.18 4.24
686 689 0.035152 CCAATCTGGTGTGCCTGCTA 60.035 55.000 0.00 0.00 34.18 3.49
687 690 1.089920 CAATCTGGTGTGCCTGCTAC 58.910 55.000 0.00 0.00 34.18 3.58
688 691 0.035056 AATCTGGTGTGCCTGCTACC 60.035 55.000 8.55 8.55 34.18 3.18
689 692 0.911525 ATCTGGTGTGCCTGCTACCT 60.912 55.000 14.22 0.00 35.51 3.08
690 693 1.376424 CTGGTGTGCCTGCTACCTG 60.376 63.158 14.22 11.06 35.51 4.00
691 694 2.116983 CTGGTGTGCCTGCTACCTGT 62.117 60.000 14.22 0.00 35.51 4.00
692 695 1.073199 GGTGTGCCTGCTACCTGTT 59.927 57.895 8.31 0.00 0.00 3.16
693 696 0.537371 GGTGTGCCTGCTACCTGTTT 60.537 55.000 8.31 0.00 0.00 2.83
694 697 0.593128 GTGTGCCTGCTACCTGTTTG 59.407 55.000 0.00 0.00 0.00 2.93
695 698 0.537143 TGTGCCTGCTACCTGTTTGG 60.537 55.000 0.00 0.00 42.93 3.28
696 699 1.603455 TGCCTGCTACCTGTTTGGC 60.603 57.895 0.00 0.00 40.22 4.52
697 700 1.603455 GCCTGCTACCTGTTTGGCA 60.603 57.895 0.00 0.00 40.04 4.92
721 724 3.851051 CCAAGGAGGCAGAGTTCTC 57.149 57.895 0.00 0.00 0.00 2.87
722 725 0.108424 CCAAGGAGGCAGAGTTCTCG 60.108 60.000 0.00 0.00 0.00 4.04
723 726 0.108424 CAAGGAGGCAGAGTTCTCGG 60.108 60.000 0.00 0.00 0.00 4.63
724 727 0.543174 AAGGAGGCAGAGTTCTCGGT 60.543 55.000 2.46 0.00 0.00 4.69
725 728 0.543174 AGGAGGCAGAGTTCTCGGTT 60.543 55.000 2.46 0.00 0.00 4.44
726 729 0.390472 GGAGGCAGAGTTCTCGGTTG 60.390 60.000 2.46 0.00 0.00 3.77
727 730 0.603569 GAGGCAGAGTTCTCGGTTGA 59.396 55.000 2.46 0.00 0.00 3.18
728 731 0.318762 AGGCAGAGTTCTCGGTTGAC 59.681 55.000 2.46 0.00 0.00 3.18
729 732 0.670854 GGCAGAGTTCTCGGTTGACC 60.671 60.000 2.46 0.00 0.00 4.02
730 733 0.318762 GCAGAGTTCTCGGTTGACCT 59.681 55.000 0.00 0.00 0.00 3.85
731 734 1.937108 GCAGAGTTCTCGGTTGACCTG 60.937 57.143 0.00 0.00 0.00 4.00
732 735 1.341531 CAGAGTTCTCGGTTGACCTGT 59.658 52.381 0.00 0.00 0.00 4.00
733 736 2.040178 AGAGTTCTCGGTTGACCTGTT 58.960 47.619 0.00 0.00 0.00 3.16
734 737 2.135933 GAGTTCTCGGTTGACCTGTTG 58.864 52.381 0.00 0.00 0.00 3.33
735 738 1.485066 AGTTCTCGGTTGACCTGTTGT 59.515 47.619 0.00 0.00 0.00 3.32
736 739 2.093128 AGTTCTCGGTTGACCTGTTGTT 60.093 45.455 0.00 0.00 0.00 2.83
737 740 2.681344 GTTCTCGGTTGACCTGTTGTTT 59.319 45.455 0.00 0.00 0.00 2.83
738 741 3.823281 TCTCGGTTGACCTGTTGTTTA 57.177 42.857 0.00 0.00 0.00 2.01
739 742 4.139859 TCTCGGTTGACCTGTTGTTTAA 57.860 40.909 0.00 0.00 0.00 1.52
740 743 3.872771 TCTCGGTTGACCTGTTGTTTAAC 59.127 43.478 0.00 0.00 37.32 2.01
741 744 2.608546 TCGGTTGACCTGTTGTTTAACG 59.391 45.455 0.00 0.00 39.71 3.18
742 745 2.352342 CGGTTGACCTGTTGTTTAACGT 59.648 45.455 0.00 0.00 39.71 3.99
743 746 3.544637 CGGTTGACCTGTTGTTTAACGTC 60.545 47.826 0.00 0.00 39.71 4.34
744 747 3.242837 GGTTGACCTGTTGTTTAACGTCC 60.243 47.826 0.00 0.00 39.71 4.79
745 748 2.203401 TGACCTGTTGTTTAACGTCCG 58.797 47.619 0.00 0.00 39.71 4.79
746 749 2.204237 GACCTGTTGTTTAACGTCCGT 58.796 47.619 0.00 0.00 39.71 4.69
747 750 2.204237 ACCTGTTGTTTAACGTCCGTC 58.796 47.619 0.00 0.00 39.71 4.79
748 751 2.159057 ACCTGTTGTTTAACGTCCGTCT 60.159 45.455 0.00 0.00 39.71 4.18
749 752 2.473984 CCTGTTGTTTAACGTCCGTCTC 59.526 50.000 0.00 0.00 39.71 3.36
750 753 3.378339 CTGTTGTTTAACGTCCGTCTCT 58.622 45.455 0.00 0.00 39.71 3.10
751 754 3.117794 TGTTGTTTAACGTCCGTCTCTG 58.882 45.455 0.00 0.00 39.71 3.35
752 755 1.774639 TGTTTAACGTCCGTCTCTGC 58.225 50.000 0.00 0.00 0.00 4.26
753 756 1.066136 GTTTAACGTCCGTCTCTGCC 58.934 55.000 0.00 0.00 0.00 4.85
754 757 0.387622 TTTAACGTCCGTCTCTGCCG 60.388 55.000 0.00 0.00 0.00 5.69
755 758 1.518056 TTAACGTCCGTCTCTGCCGT 61.518 55.000 0.00 0.00 0.00 5.68
756 759 1.915614 TAACGTCCGTCTCTGCCGTC 61.916 60.000 0.00 0.00 0.00 4.79
757 760 4.477975 CGTCCGTCTCTGCCGTCC 62.478 72.222 0.00 0.00 0.00 4.79
758 761 3.371063 GTCCGTCTCTGCCGTCCA 61.371 66.667 0.00 0.00 0.00 4.02
759 762 2.362503 TCCGTCTCTGCCGTCCAT 60.363 61.111 0.00 0.00 0.00 3.41
760 763 1.982395 TCCGTCTCTGCCGTCCATT 60.982 57.895 0.00 0.00 0.00 3.16
761 764 1.519455 CCGTCTCTGCCGTCCATTC 60.519 63.158 0.00 0.00 0.00 2.67
762 765 1.513158 CGTCTCTGCCGTCCATTCT 59.487 57.895 0.00 0.00 0.00 2.40
763 766 0.803768 CGTCTCTGCCGTCCATTCTG 60.804 60.000 0.00 0.00 0.00 3.02
764 767 1.086634 GTCTCTGCCGTCCATTCTGC 61.087 60.000 0.00 0.00 0.00 4.26
765 768 1.220206 CTCTGCCGTCCATTCTGCT 59.780 57.895 0.00 0.00 0.00 4.24
766 769 1.078918 TCTGCCGTCCATTCTGCTG 60.079 57.895 0.00 0.00 0.00 4.41
767 770 2.046023 TGCCGTCCATTCTGCTGG 60.046 61.111 0.00 0.00 37.66 4.85
768 771 3.512516 GCCGTCCATTCTGCTGGC 61.513 66.667 0.00 0.00 36.16 4.85
769 772 2.825836 CCGTCCATTCTGCTGGCC 60.826 66.667 0.00 0.00 36.16 5.36
770 773 2.046023 CGTCCATTCTGCTGGCCA 60.046 61.111 4.71 4.71 36.16 5.36
771 774 2.401766 CGTCCATTCTGCTGGCCAC 61.402 63.158 0.00 0.00 36.16 5.01
772 775 2.046023 TCCATTCTGCTGGCCACG 60.046 61.111 0.00 0.00 36.16 4.94
773 776 2.360350 CCATTCTGCTGGCCACGT 60.360 61.111 0.00 0.00 0.00 4.49
774 777 2.693762 CCATTCTGCTGGCCACGTG 61.694 63.158 9.08 9.08 0.00 4.49
775 778 2.360350 ATTCTGCTGGCCACGTGG 60.360 61.111 30.66 30.66 38.53 4.94
785 788 2.666190 CCACGTGGCACCTGACAG 60.666 66.667 24.02 2.51 30.83 3.51
786 789 2.108976 CACGTGGCACCTGACAGT 59.891 61.111 12.86 0.00 30.83 3.55
787 790 2.108976 ACGTGGCACCTGACAGTG 59.891 61.111 12.86 0.00 40.88 3.66
788 791 2.666190 CGTGGCACCTGACAGTGG 60.666 66.667 12.86 0.00 38.24 4.00
789 792 2.281761 GTGGCACCTGACAGTGGG 60.282 66.667 6.29 0.00 38.24 4.61
790 793 2.447572 TGGCACCTGACAGTGGGA 60.448 61.111 0.93 0.00 38.24 4.37
791 794 2.032681 GGCACCTGACAGTGGGAC 59.967 66.667 0.93 0.00 38.24 4.46
792 795 2.032681 GCACCTGACAGTGGGACC 59.967 66.667 0.93 0.00 38.24 4.46
793 796 2.750350 CACCTGACAGTGGGACCC 59.250 66.667 2.45 2.45 33.95 4.46
794 797 2.146724 CACCTGACAGTGGGACCCA 61.147 63.158 9.95 9.95 33.95 4.51
795 798 1.151810 ACCTGACAGTGGGACCCAT 60.152 57.895 18.51 0.00 35.28 4.00
796 799 1.201429 ACCTGACAGTGGGACCCATC 61.201 60.000 18.51 11.25 35.28 3.51
797 800 1.604378 CTGACAGTGGGACCCATCC 59.396 63.158 18.51 4.50 45.42 3.51
807 810 1.668419 GGACCCATCCGTCAGATTTG 58.332 55.000 0.00 0.00 34.48 2.32
808 811 1.017387 GACCCATCCGTCAGATTTGC 58.983 55.000 0.00 0.00 30.59 3.68
809 812 0.327924 ACCCATCCGTCAGATTTGCA 59.672 50.000 0.00 0.00 30.59 4.08
810 813 1.064463 ACCCATCCGTCAGATTTGCAT 60.064 47.619 0.00 0.00 30.59 3.96
811 814 2.026641 CCCATCCGTCAGATTTGCATT 58.973 47.619 0.00 0.00 30.59 3.56
812 815 3.213506 CCCATCCGTCAGATTTGCATTA 58.786 45.455 0.00 0.00 30.59 1.90
813 816 3.631686 CCCATCCGTCAGATTTGCATTAA 59.368 43.478 0.00 0.00 30.59 1.40
814 817 4.097741 CCCATCCGTCAGATTTGCATTAAA 59.902 41.667 0.00 0.00 30.59 1.52
815 818 5.036737 CCATCCGTCAGATTTGCATTAAAC 58.963 41.667 0.00 0.00 30.59 2.01
816 819 4.335082 TCCGTCAGATTTGCATTAAACG 57.665 40.909 0.00 0.00 0.00 3.60
817 820 3.997681 TCCGTCAGATTTGCATTAAACGA 59.002 39.130 7.99 0.00 0.00 3.85
818 821 4.088648 CCGTCAGATTTGCATTAAACGAC 58.911 43.478 7.99 1.84 0.00 4.34
819 822 4.142902 CCGTCAGATTTGCATTAAACGACT 60.143 41.667 7.99 0.00 0.00 4.18
820 823 5.015733 CGTCAGATTTGCATTAAACGACTC 58.984 41.667 0.00 0.00 0.00 3.36
821 824 5.163953 CGTCAGATTTGCATTAAACGACTCT 60.164 40.000 0.00 0.00 0.00 3.24
822 825 6.034577 CGTCAGATTTGCATTAAACGACTCTA 59.965 38.462 0.00 0.00 0.00 2.43
823 826 7.411480 CGTCAGATTTGCATTAAACGACTCTAA 60.411 37.037 0.00 0.00 0.00 2.10
824 827 8.391106 GTCAGATTTGCATTAAACGACTCTAAT 58.609 33.333 0.00 0.00 0.00 1.73
825 828 8.604035 TCAGATTTGCATTAAACGACTCTAATC 58.396 33.333 0.00 0.00 0.00 1.75
826 829 8.390354 CAGATTTGCATTAAACGACTCTAATCA 58.610 33.333 0.00 0.00 0.00 2.57
827 830 9.113838 AGATTTGCATTAAACGACTCTAATCAT 57.886 29.630 0.00 0.00 0.00 2.45
828 831 9.722056 GATTTGCATTAAACGACTCTAATCATT 57.278 29.630 0.00 0.00 0.00 2.57
829 832 9.722056 ATTTGCATTAAACGACTCTAATCATTC 57.278 29.630 0.00 0.00 0.00 2.67
830 833 7.841915 TGCATTAAACGACTCTAATCATTCA 57.158 32.000 0.00 0.00 0.00 2.57
831 834 8.262715 TGCATTAAACGACTCTAATCATTCAA 57.737 30.769 0.00 0.00 0.00 2.69
832 835 8.892723 TGCATTAAACGACTCTAATCATTCAAT 58.107 29.630 0.00 0.00 0.00 2.57
833 836 9.374960 GCATTAAACGACTCTAATCATTCAATC 57.625 33.333 0.00 0.00 0.00 2.67
836 839 6.595772 AACGACTCTAATCATTCAATCAGC 57.404 37.500 0.00 0.00 0.00 4.26
837 840 4.742167 ACGACTCTAATCATTCAATCAGCG 59.258 41.667 0.00 0.00 0.00 5.18
838 841 4.742167 CGACTCTAATCATTCAATCAGCGT 59.258 41.667 0.00 0.00 0.00 5.07
839 842 5.233050 CGACTCTAATCATTCAATCAGCGTT 59.767 40.000 0.00 0.00 0.00 4.84
840 843 6.237942 CGACTCTAATCATTCAATCAGCGTTT 60.238 38.462 0.00 0.00 0.00 3.60
841 844 7.383102 ACTCTAATCATTCAATCAGCGTTTT 57.617 32.000 0.00 0.00 0.00 2.43
842 845 7.820648 ACTCTAATCATTCAATCAGCGTTTTT 58.179 30.769 0.00 0.00 0.00 1.94
859 862 2.354109 TTTTGCAAACTGTCAACGCA 57.646 40.000 12.39 0.00 0.00 5.24
860 863 2.354109 TTTGCAAACTGTCAACGCAA 57.646 40.000 8.05 0.00 40.59 4.85
861 864 2.575694 TTGCAAACTGTCAACGCAAT 57.424 40.000 0.00 0.00 37.64 3.56
862 865 2.575694 TGCAAACTGTCAACGCAATT 57.424 40.000 0.00 0.00 0.00 2.32
863 866 2.191802 TGCAAACTGTCAACGCAATTG 58.808 42.857 0.00 0.00 39.94 2.32
864 867 2.192624 GCAAACTGTCAACGCAATTGT 58.807 42.857 7.40 0.00 39.54 2.71
865 868 2.034675 GCAAACTGTCAACGCAATTGTG 60.035 45.455 17.32 17.32 39.54 3.33
866 869 3.433709 CAAACTGTCAACGCAATTGTGA 58.566 40.909 25.16 9.47 39.54 3.58
867 870 3.988379 AACTGTCAACGCAATTGTGAT 57.012 38.095 25.16 11.14 39.54 3.06
868 871 3.272439 ACTGTCAACGCAATTGTGATG 57.728 42.857 25.16 22.29 39.54 3.07
869 872 2.030893 ACTGTCAACGCAATTGTGATGG 60.031 45.455 25.16 12.91 39.54 3.51
870 873 1.269174 TGTCAACGCAATTGTGATGGG 59.731 47.619 25.16 10.91 39.54 4.00
871 874 1.269448 GTCAACGCAATTGTGATGGGT 59.731 47.619 25.16 1.86 44.68 4.51
875 878 3.467374 ACGCAATTGTGATGGGTTTTT 57.533 38.095 25.16 0.00 40.58 1.94
876 879 3.129871 ACGCAATTGTGATGGGTTTTTG 58.870 40.909 25.16 0.00 40.58 2.44
877 880 3.181471 ACGCAATTGTGATGGGTTTTTGA 60.181 39.130 25.16 0.00 40.58 2.69
878 881 3.806521 CGCAATTGTGATGGGTTTTTGAA 59.193 39.130 13.88 0.00 0.00 2.69
879 882 4.272018 CGCAATTGTGATGGGTTTTTGAAA 59.728 37.500 13.88 0.00 0.00 2.69
880 883 5.220739 CGCAATTGTGATGGGTTTTTGAAAA 60.221 36.000 13.88 0.00 0.00 2.29
881 884 6.558909 GCAATTGTGATGGGTTTTTGAAAAA 58.441 32.000 7.40 0.00 0.00 1.94
926 929 7.475137 TTTTGATTTAGGGTCCCTAATTGTG 57.525 36.000 27.82 0.00 44.38 3.33
927 930 5.124036 TGATTTAGGGTCCCTAATTGTGG 57.876 43.478 27.82 0.00 44.38 4.17
928 931 4.542525 TGATTTAGGGTCCCTAATTGTGGT 59.457 41.667 27.82 11.99 44.38 4.16
929 932 4.310022 TTTAGGGTCCCTAATTGTGGTG 57.690 45.455 27.82 0.00 44.38 4.17
930 933 0.331616 AGGGTCCCTAATTGTGGTGC 59.668 55.000 9.39 0.00 28.47 5.01
931 934 0.331616 GGGTCCCTAATTGTGGTGCT 59.668 55.000 0.00 0.00 0.00 4.40
932 935 1.272480 GGGTCCCTAATTGTGGTGCTT 60.272 52.381 0.00 0.00 0.00 3.91
933 936 2.525368 GGTCCCTAATTGTGGTGCTTT 58.475 47.619 0.00 0.00 0.00 3.51
934 937 2.897326 GGTCCCTAATTGTGGTGCTTTT 59.103 45.455 0.00 0.00 0.00 2.27
935 938 3.323691 GGTCCCTAATTGTGGTGCTTTTT 59.676 43.478 0.00 0.00 0.00 1.94
997 1000 1.812922 GTCCACCTCATCTGCAGCG 60.813 63.158 9.47 2.31 0.00 5.18
1005 1008 1.897137 CATCTGCAGCGCCATGGAT 60.897 57.895 18.40 0.18 0.00 3.41
1211 1217 1.603739 GTGTCAGCTTCCCCAACCC 60.604 63.158 0.00 0.00 0.00 4.11
1570 1630 0.729478 CGTCGTGGTACAGAGCTGTG 60.729 60.000 9.74 9.74 44.63 3.66
1586 1659 2.223782 GCTGTGTCAATTTGCAAGTGGA 60.224 45.455 11.13 3.81 0.00 4.02
1611 1690 7.325660 ACAGAGCTGTGTGAATTAATAATGG 57.674 36.000 16.85 0.00 43.11 3.16
1635 1714 9.716531 TGGTAATCTATGATCTGAATTAGCTTG 57.283 33.333 0.00 0.00 0.00 4.01
1680 1832 1.615384 GGGAGCAAGGAGAGCATTGTT 60.615 52.381 0.00 0.00 38.04 2.83
1683 1835 1.074405 AGCAAGGAGAGCATTGTTCCA 59.926 47.619 0.00 0.00 38.04 3.53
1688 1840 1.200948 GGAGAGCATTGTTCCAAGTGC 59.799 52.381 0.00 0.00 37.84 4.40
1722 1874 1.961277 GGAGGTGCAGTTCGGTGTG 60.961 63.158 0.00 0.00 0.00 3.82
1801 1953 4.016444 TCTCCATGTCCAGGTAAAATTGC 58.984 43.478 0.00 0.00 0.00 3.56
1802 1954 3.096092 TCCATGTCCAGGTAAAATTGCC 58.904 45.455 0.00 0.00 0.00 4.52
1809 2590 9.295825 CATGTCCAGGTAAAATTGCCTATATAA 57.704 33.333 2.31 0.00 41.64 0.98
1955 2890 3.118665 TGATCGATTTCATCTGCAGTCCA 60.119 43.478 14.67 0.00 0.00 4.02
2128 3127 2.997897 AGAGGTCGGGTGCTGGAC 60.998 66.667 0.00 0.00 0.00 4.02
2339 3498 3.368116 CCCTTTTGACCTCCAGTACTACG 60.368 52.174 0.00 0.00 0.00 3.51
2360 3519 3.722147 GCCGAAGCAGAAATGATCTCTA 58.278 45.455 0.00 0.00 35.73 2.43
2424 3590 4.803098 AGCTAGACCTTATGTTGTCGTT 57.197 40.909 0.00 0.00 36.61 3.85
2437 3603 0.406750 TGTCGTTAGACCTGGGGAGA 59.593 55.000 0.00 0.00 46.51 3.71
2438 3604 0.816373 GTCGTTAGACCTGGGGAGAC 59.184 60.000 0.00 0.00 41.41 3.36
2439 3605 0.702902 TCGTTAGACCTGGGGAGACT 59.297 55.000 0.00 0.00 0.00 3.24
2440 3606 1.918262 TCGTTAGACCTGGGGAGACTA 59.082 52.381 0.00 0.00 0.00 2.59
2472 3644 1.522258 GTGAAATGCTTGTTTGTGCCG 59.478 47.619 0.00 0.00 0.00 5.69
2488 3660 2.876550 GTGCCGAGTCAAGTTTTAGGTT 59.123 45.455 0.00 0.00 0.00 3.50
2491 3663 3.473625 CCGAGTCAAGTTTTAGGTTGGT 58.526 45.455 0.00 0.00 0.00 3.67
2494 3666 4.374399 GAGTCAAGTTTTAGGTTGGTCGA 58.626 43.478 0.00 0.00 0.00 4.20
2529 3701 9.988815 GCATAACGGATGGAATTAGATATCTAT 57.011 33.333 13.22 0.00 35.91 1.98
2561 3780 5.689383 TGTAATGGTCTTTCTGCTTTGTC 57.311 39.130 0.00 0.00 0.00 3.18
2562 3781 5.129634 TGTAATGGTCTTTCTGCTTTGTCA 58.870 37.500 0.00 0.00 0.00 3.58
2570 3789 3.865011 TTCTGCTTTGTCAAACTGCAA 57.135 38.095 11.92 3.38 33.07 4.08
2583 3802 6.039159 TGTCAAACTGCAATTTCAGTATGTCA 59.961 34.615 11.23 6.59 45.77 3.58
2599 3818 8.556194 TCAGTATGTCATGTAGTTTTTGTTGTC 58.444 33.333 0.00 0.00 37.40 3.18
2625 3844 5.163824 GCATGAATTAATCTGCTATGCGCTA 60.164 40.000 9.73 0.00 40.11 4.26
2642 3861 2.079925 GCTAGGTTGGTTTCAGCTCAG 58.920 52.381 0.00 0.00 0.00 3.35
2654 3873 5.865013 GGTTTCAGCTCAGAAGAGTACTAAC 59.135 44.000 0.00 0.00 44.00 2.34
2820 4040 1.066071 GGAGTGGTGCTAGAGAAACCC 60.066 57.143 0.00 0.00 32.70 4.11
2821 4041 1.623811 GAGTGGTGCTAGAGAAACCCA 59.376 52.381 0.00 0.00 32.70 4.51
2880 4140 9.672086 GTACAGAAATAGATGTATGTGACTCTC 57.328 37.037 0.00 0.00 34.60 3.20
2940 4200 5.163713 GGATAATCAGTTCTGTCCAACTTGC 60.164 44.000 0.00 0.00 34.17 4.01
2954 4214 5.022122 TCCAACTTGCAATGGGATTATCAA 58.978 37.500 17.11 0.00 37.31 2.57
3008 4403 3.625764 CCTTTTGTCCTTGTCGTTTCTCA 59.374 43.478 0.00 0.00 0.00 3.27
3010 4405 4.875544 TTTGTCCTTGTCGTTTCTCAAG 57.124 40.909 0.00 0.00 40.19 3.02
3026 4445 8.673711 CGTTTCTCAAGGGATTTATTTCACATA 58.326 33.333 0.00 0.00 0.00 2.29
3030 4449 9.342308 TCTCAAGGGATTTATTTCACATACATC 57.658 33.333 0.00 0.00 0.00 3.06
3031 4450 9.123902 CTCAAGGGATTTATTTCACATACATCA 57.876 33.333 0.00 0.00 0.00 3.07
3081 4541 1.268234 GCCATGTGCTTGCTCGATTAC 60.268 52.381 0.00 0.00 36.87 1.89
3107 4574 1.659794 GAGAGCTCCTGAGGATCGC 59.340 63.158 10.93 2.57 38.61 4.58
3112 4579 1.370437 CTCCTGAGGATCGCATGGG 59.630 63.158 0.00 2.76 38.61 4.00
3168 4635 1.374758 CGCCGGATTCTATGCCTCC 60.375 63.158 5.05 0.00 0.00 4.30
3197 4664 4.383226 GGGTGTTAGGGTCTTGAGAGATTC 60.383 50.000 0.00 0.00 33.70 2.52
3204 4671 6.080969 AGGGTCTTGAGAGATTCTAGTGTA 57.919 41.667 0.00 0.00 33.70 2.90
3206 4673 6.549364 AGGGTCTTGAGAGATTCTAGTGTATG 59.451 42.308 0.00 0.00 33.70 2.39
3207 4674 6.322712 GGGTCTTGAGAGATTCTAGTGTATGT 59.677 42.308 0.00 0.00 33.70 2.29
3208 4675 7.199766 GGTCTTGAGAGATTCTAGTGTATGTG 58.800 42.308 0.00 0.00 33.70 3.21
3209 4676 7.199766 GTCTTGAGAGATTCTAGTGTATGTGG 58.800 42.308 0.00 0.00 33.70 4.17
3210 4677 6.892456 TCTTGAGAGATTCTAGTGTATGTGGT 59.108 38.462 0.00 0.00 31.59 4.16
3211 4678 7.397476 TCTTGAGAGATTCTAGTGTATGTGGTT 59.603 37.037 0.00 0.00 31.59 3.67
3212 4679 6.867550 TGAGAGATTCTAGTGTATGTGGTTG 58.132 40.000 0.00 0.00 0.00 3.77
3213 4680 6.437477 TGAGAGATTCTAGTGTATGTGGTTGT 59.563 38.462 0.00 0.00 0.00 3.32
3214 4681 7.039011 TGAGAGATTCTAGTGTATGTGGTTGTT 60.039 37.037 0.00 0.00 0.00 2.83
3215 4682 7.680730 AGAGATTCTAGTGTATGTGGTTGTTT 58.319 34.615 0.00 0.00 0.00 2.83
3216 4683 7.819900 AGAGATTCTAGTGTATGTGGTTGTTTC 59.180 37.037 0.00 0.00 0.00 2.78
3217 4684 7.680730 AGATTCTAGTGTATGTGGTTGTTTCT 58.319 34.615 0.00 0.00 0.00 2.52
3218 4685 8.157476 AGATTCTAGTGTATGTGGTTGTTTCTT 58.843 33.333 0.00 0.00 0.00 2.52
3219 4686 7.724305 TTCTAGTGTATGTGGTTGTTTCTTC 57.276 36.000 0.00 0.00 0.00 2.87
3220 4687 7.062749 TCTAGTGTATGTGGTTGTTTCTTCT 57.937 36.000 0.00 0.00 0.00 2.85
3221 4688 8.185506 TCTAGTGTATGTGGTTGTTTCTTCTA 57.814 34.615 0.00 0.00 0.00 2.10
3222 4689 8.304596 TCTAGTGTATGTGGTTGTTTCTTCTAG 58.695 37.037 0.00 0.00 0.00 2.43
3223 4690 6.827727 AGTGTATGTGGTTGTTTCTTCTAGT 58.172 36.000 0.00 0.00 0.00 2.57
3224 4691 6.706270 AGTGTATGTGGTTGTTTCTTCTAGTG 59.294 38.462 0.00 0.00 0.00 2.74
3225 4692 5.468746 TGTATGTGGTTGTTTCTTCTAGTGC 59.531 40.000 0.00 0.00 0.00 4.40
3226 4693 3.211045 TGTGGTTGTTTCTTCTAGTGCC 58.789 45.455 0.00 0.00 0.00 5.01
3227 4694 3.118038 TGTGGTTGTTTCTTCTAGTGCCT 60.118 43.478 0.00 0.00 0.00 4.75
3228 4695 3.251004 GTGGTTGTTTCTTCTAGTGCCTG 59.749 47.826 0.00 0.00 0.00 4.85
3245 4712 2.619147 CCTGCATCTGTGTTGAGAGAG 58.381 52.381 0.00 0.00 0.00 3.20
3268 4735 8.915036 AGAGACTATATGTAGGTTTAGGTTGTG 58.085 37.037 1.26 0.00 31.96 3.33
3274 4741 6.877611 ATGTAGGTTTAGGTTGTGTCTTTG 57.122 37.500 0.00 0.00 0.00 2.77
3294 4764 3.781808 TGGTTGCTAGTGTTAGGGTCTA 58.218 45.455 0.00 0.00 0.00 2.59
3353 4823 4.996758 ACTTGCAATAAAATTCCCTGCAAC 59.003 37.500 0.00 0.00 45.38 4.17
3354 4824 3.936564 TGCAATAAAATTCCCTGCAACC 58.063 40.909 0.00 0.00 39.91 3.77
3355 4825 3.270027 GCAATAAAATTCCCTGCAACCC 58.730 45.455 0.00 0.00 33.19 4.11
3356 4826 3.520569 CAATAAAATTCCCTGCAACCCG 58.479 45.455 0.00 0.00 0.00 5.28
3357 4827 1.551452 TAAAATTCCCTGCAACCCGG 58.449 50.000 0.00 0.00 0.00 5.73
3358 4828 0.471022 AAAATTCCCTGCAACCCGGT 60.471 50.000 0.00 0.00 0.00 5.28
3359 4829 0.471022 AAATTCCCTGCAACCCGGTT 60.471 50.000 0.00 0.00 0.00 4.44
3360 4830 1.184970 AATTCCCTGCAACCCGGTTG 61.185 55.000 23.84 23.84 45.24 3.77
3367 4837 2.811101 CAACCCGGTTGCTGCAAA 59.189 55.556 17.80 0.00 36.73 3.68
3368 4838 1.142748 CAACCCGGTTGCTGCAAAA 59.857 52.632 17.80 0.00 36.73 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 1.445238 GTCTGCGAGTCAGGACTGC 60.445 63.158 6.68 10.95 42.66 4.40
96 99 1.792949 CACGTTGACTACAAGACAGCC 59.207 52.381 0.00 0.00 36.64 4.85
178 181 4.394712 CACCTCCCAGTGTCGCCC 62.395 72.222 0.00 0.00 32.89 6.13
293 296 4.052229 CACCGCCCGAACTCGACT 62.052 66.667 0.00 0.00 43.02 4.18
314 317 1.385347 TCAACCCCTGACCACACCT 60.385 57.895 0.00 0.00 0.00 4.00
330 333 2.419990 CCTTGTCATGGCCGTAATCTCA 60.420 50.000 0.00 0.00 0.00 3.27
373 376 4.280677 TCCCTCTTCGCACAAAATCAATTT 59.719 37.500 0.00 0.00 0.00 1.82
374 377 3.826157 TCCCTCTTCGCACAAAATCAATT 59.174 39.130 0.00 0.00 0.00 2.32
375 378 3.420893 TCCCTCTTCGCACAAAATCAAT 58.579 40.909 0.00 0.00 0.00 2.57
376 379 2.813754 CTCCCTCTTCGCACAAAATCAA 59.186 45.455 0.00 0.00 0.00 2.57
377 380 2.426522 CTCCCTCTTCGCACAAAATCA 58.573 47.619 0.00 0.00 0.00 2.57
378 381 1.740025 CCTCCCTCTTCGCACAAAATC 59.260 52.381 0.00 0.00 0.00 2.17
379 382 1.351017 TCCTCCCTCTTCGCACAAAAT 59.649 47.619 0.00 0.00 0.00 1.82
380 383 0.762418 TCCTCCCTCTTCGCACAAAA 59.238 50.000 0.00 0.00 0.00 2.44
381 384 0.984230 ATCCTCCCTCTTCGCACAAA 59.016 50.000 0.00 0.00 0.00 2.83
382 385 1.480954 GTATCCTCCCTCTTCGCACAA 59.519 52.381 0.00 0.00 0.00 3.33
383 386 1.112113 GTATCCTCCCTCTTCGCACA 58.888 55.000 0.00 0.00 0.00 4.57
384 387 0.389757 GGTATCCTCCCTCTTCGCAC 59.610 60.000 0.00 0.00 0.00 5.34
385 388 0.032515 TGGTATCCTCCCTCTTCGCA 60.033 55.000 0.00 0.00 0.00 5.10
386 389 1.001406 CATGGTATCCTCCCTCTTCGC 59.999 57.143 0.00 0.00 0.00 4.70
387 390 1.620819 CCATGGTATCCTCCCTCTTCG 59.379 57.143 2.57 0.00 0.00 3.79
388 391 1.349357 GCCATGGTATCCTCCCTCTTC 59.651 57.143 14.67 0.00 0.00 2.87
389 392 1.345422 TGCCATGGTATCCTCCCTCTT 60.345 52.381 14.67 0.00 0.00 2.85
390 393 0.268869 TGCCATGGTATCCTCCCTCT 59.731 55.000 14.67 0.00 0.00 3.69
391 394 0.689623 CTGCCATGGTATCCTCCCTC 59.310 60.000 14.67 0.00 0.00 4.30
392 395 0.769776 CCTGCCATGGTATCCTCCCT 60.770 60.000 14.67 0.00 0.00 4.20
393 396 1.763770 CCTGCCATGGTATCCTCCC 59.236 63.158 14.67 0.00 0.00 4.30
394 397 1.763770 CCCTGCCATGGTATCCTCC 59.236 63.158 14.67 0.00 0.00 4.30
395 398 1.073897 GCCCTGCCATGGTATCCTC 59.926 63.158 14.67 0.00 0.00 3.71
396 399 0.104462 TAGCCCTGCCATGGTATCCT 60.104 55.000 14.67 7.82 0.00 3.24
397 400 0.326264 CTAGCCCTGCCATGGTATCC 59.674 60.000 14.67 0.00 0.00 2.59
398 401 0.322008 GCTAGCCCTGCCATGGTATC 60.322 60.000 14.67 1.20 0.00 2.24
399 402 0.769776 AGCTAGCCCTGCCATGGTAT 60.770 55.000 14.67 0.00 0.00 2.73
400 403 1.384502 AGCTAGCCCTGCCATGGTA 60.385 57.895 14.67 8.24 0.00 3.25
401 404 2.693864 AGCTAGCCCTGCCATGGT 60.694 61.111 14.67 0.00 0.00 3.55
402 405 2.203308 CAGCTAGCCCTGCCATGG 60.203 66.667 12.13 7.63 0.00 3.66
403 406 1.525535 GTCAGCTAGCCCTGCCATG 60.526 63.158 12.13 0.79 32.87 3.66
404 407 1.351080 ATGTCAGCTAGCCCTGCCAT 61.351 55.000 12.13 2.63 32.87 4.40
405 408 1.997311 ATGTCAGCTAGCCCTGCCA 60.997 57.895 12.13 0.00 32.87 4.92
406 409 1.525535 CATGTCAGCTAGCCCTGCC 60.526 63.158 12.13 0.00 32.87 4.85
407 410 0.813210 GTCATGTCAGCTAGCCCTGC 60.813 60.000 12.13 0.00 32.87 4.85
408 411 0.529337 CGTCATGTCAGCTAGCCCTG 60.529 60.000 12.13 4.11 0.00 4.45
409 412 1.680522 CCGTCATGTCAGCTAGCCCT 61.681 60.000 12.13 0.00 0.00 5.19
410 413 1.227380 CCGTCATGTCAGCTAGCCC 60.227 63.158 12.13 0.00 0.00 5.19
411 414 1.884926 GCCGTCATGTCAGCTAGCC 60.885 63.158 12.13 0.00 0.00 3.93
412 415 2.233654 CGCCGTCATGTCAGCTAGC 61.234 63.158 6.62 6.62 0.00 3.42
413 416 0.458543 AACGCCGTCATGTCAGCTAG 60.459 55.000 0.00 0.00 0.00 3.42
414 417 0.735978 CAACGCCGTCATGTCAGCTA 60.736 55.000 0.00 0.00 0.00 3.32
415 418 2.029288 CAACGCCGTCATGTCAGCT 61.029 57.895 0.00 0.00 0.00 4.24
416 419 2.317609 ACAACGCCGTCATGTCAGC 61.318 57.895 0.00 0.00 0.00 4.26
417 420 0.943835 TCACAACGCCGTCATGTCAG 60.944 55.000 0.00 0.00 0.00 3.51
418 421 0.943835 CTCACAACGCCGTCATGTCA 60.944 55.000 0.00 0.00 0.00 3.58
419 422 0.666274 TCTCACAACGCCGTCATGTC 60.666 55.000 0.00 0.00 0.00 3.06
420 423 0.944311 GTCTCACAACGCCGTCATGT 60.944 55.000 0.00 0.00 0.00 3.21
421 424 0.667487 AGTCTCACAACGCCGTCATG 60.667 55.000 0.00 0.00 0.00 3.07
422 425 0.388649 GAGTCTCACAACGCCGTCAT 60.389 55.000 0.00 0.00 0.00 3.06
423 426 1.007734 GAGTCTCACAACGCCGTCA 60.008 57.895 0.00 0.00 0.00 4.35
424 427 2.081212 CGAGTCTCACAACGCCGTC 61.081 63.158 0.00 0.00 0.00 4.79
425 428 2.050351 CGAGTCTCACAACGCCGT 60.050 61.111 0.00 0.00 0.00 5.68
426 429 2.805353 CCGAGTCTCACAACGCCG 60.805 66.667 0.00 0.00 0.00 6.46
427 430 3.112709 GCCGAGTCTCACAACGCC 61.113 66.667 0.00 0.00 0.00 5.68
428 431 3.112709 GGCCGAGTCTCACAACGC 61.113 66.667 0.00 0.00 0.00 4.84
429 432 2.805353 CGGCCGAGTCTCACAACG 60.805 66.667 24.07 0.00 0.00 4.10
430 433 1.300697 AACGGCCGAGTCTCACAAC 60.301 57.895 35.90 0.00 0.00 3.32
431 434 1.300620 CAACGGCCGAGTCTCACAA 60.301 57.895 35.90 0.00 0.00 3.33
432 435 2.338620 CAACGGCCGAGTCTCACA 59.661 61.111 35.90 0.00 0.00 3.58
433 436 2.432628 CCAACGGCCGAGTCTCAC 60.433 66.667 35.90 0.00 0.00 3.51
434 437 4.373116 GCCAACGGCCGAGTCTCA 62.373 66.667 35.90 0.00 44.06 3.27
446 449 2.045926 ATGGAGCTCGTGGCCAAC 60.046 61.111 7.24 0.15 43.05 3.77
447 450 2.046023 CATGGAGCTCGTGGCCAA 60.046 61.111 7.24 0.00 43.05 4.52
448 451 3.002583 TCATGGAGCTCGTGGCCA 61.003 61.111 0.00 0.00 43.05 5.36
449 452 2.202987 CTCATGGAGCTCGTGGCC 60.203 66.667 7.83 0.00 43.05 5.36
450 453 1.812922 CACTCATGGAGCTCGTGGC 60.813 63.158 7.83 0.00 42.19 5.01
451 454 4.509756 CACTCATGGAGCTCGTGG 57.490 61.111 7.83 6.23 32.04 4.94
487 490 3.772853 AAGTTGCAGTGGCGCTCCA 62.773 57.895 7.64 0.00 45.35 3.86
488 491 2.980233 AAGTTGCAGTGGCGCTCC 60.980 61.111 7.64 0.00 45.35 4.70
489 492 2.253452 CAAGTTGCAGTGGCGCTC 59.747 61.111 7.64 0.45 45.35 5.03
490 493 3.969802 GCAAGTTGCAGTGGCGCT 61.970 61.111 22.90 0.00 44.26 5.92
492 495 3.584250 CTCGCAAGTTGCAGTGGCG 62.584 63.158 26.56 12.52 45.36 5.69
493 496 2.180131 CTCTCGCAAGTTGCAGTGGC 62.180 60.000 26.56 0.00 45.36 5.01
494 497 0.601046 TCTCTCGCAAGTTGCAGTGG 60.601 55.000 26.56 17.35 45.36 4.00
495 498 0.788995 CTCTCTCGCAAGTTGCAGTG 59.211 55.000 26.56 20.53 45.36 3.66
496 499 0.948141 GCTCTCTCGCAAGTTGCAGT 60.948 55.000 26.56 0.00 45.36 4.40
497 500 0.947660 TGCTCTCTCGCAAGTTGCAG 60.948 55.000 26.56 20.87 45.36 4.41
498 501 1.069596 TGCTCTCTCGCAAGTTGCA 59.930 52.632 26.56 13.16 45.36 4.08
499 502 1.224069 TGTGCTCTCTCGCAAGTTGC 61.224 55.000 18.18 18.18 42.32 4.17
500 503 0.788995 CTGTGCTCTCTCGCAAGTTG 59.211 55.000 0.00 0.00 42.32 3.16
501 504 0.676184 TCTGTGCTCTCTCGCAAGTT 59.324 50.000 0.00 0.00 42.32 2.66
502 505 0.243365 CTCTGTGCTCTCTCGCAAGT 59.757 55.000 0.00 0.00 42.32 3.16
503 506 0.458197 CCTCTGTGCTCTCTCGCAAG 60.458 60.000 0.00 0.00 42.32 4.01
504 507 0.895559 TCCTCTGTGCTCTCTCGCAA 60.896 55.000 0.00 0.00 42.32 4.85
505 508 1.303643 TCCTCTGTGCTCTCTCGCA 60.304 57.895 0.00 0.00 37.62 5.10
506 509 1.433064 CTCCTCTGTGCTCTCTCGC 59.567 63.158 0.00 0.00 0.00 5.03
507 510 1.383456 CCCTCCTCTGTGCTCTCTCG 61.383 65.000 0.00 0.00 0.00 4.04
508 511 0.033601 TCCCTCCTCTGTGCTCTCTC 60.034 60.000 0.00 0.00 0.00 3.20
509 512 0.324275 GTCCCTCCTCTGTGCTCTCT 60.324 60.000 0.00 0.00 0.00 3.10
510 513 0.613292 TGTCCCTCCTCTGTGCTCTC 60.613 60.000 0.00 0.00 0.00 3.20
511 514 0.614415 CTGTCCCTCCTCTGTGCTCT 60.614 60.000 0.00 0.00 0.00 4.09
512 515 0.613292 TCTGTCCCTCCTCTGTGCTC 60.613 60.000 0.00 0.00 0.00 4.26
513 516 0.614415 CTCTGTCCCTCCTCTGTGCT 60.614 60.000 0.00 0.00 0.00 4.40
514 517 1.612395 CCTCTGTCCCTCCTCTGTGC 61.612 65.000 0.00 0.00 0.00 4.57
515 518 0.975040 CCCTCTGTCCCTCCTCTGTG 60.975 65.000 0.00 0.00 0.00 3.66
516 519 1.390125 CCCTCTGTCCCTCCTCTGT 59.610 63.158 0.00 0.00 0.00 3.41
517 520 2.063378 GCCCTCTGTCCCTCCTCTG 61.063 68.421 0.00 0.00 0.00 3.35
518 521 2.366570 GCCCTCTGTCCCTCCTCT 59.633 66.667 0.00 0.00 0.00 3.69
519 522 3.151022 CGCCCTCTGTCCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
520 523 3.999285 ACGCCCTCTGTCCCTCCT 61.999 66.667 0.00 0.00 0.00 3.69
521 524 3.775654 CACGCCCTCTGTCCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
522 525 3.775654 CCACGCCCTCTGTCCCTC 61.776 72.222 0.00 0.00 0.00 4.30
541 544 2.781595 TTTCTCTTCCTCCGTGCGCC 62.782 60.000 4.18 0.00 0.00 6.53
542 545 1.355066 CTTTCTCTTCCTCCGTGCGC 61.355 60.000 0.00 0.00 0.00 6.09
543 546 0.737715 CCTTTCTCTTCCTCCGTGCG 60.738 60.000 0.00 0.00 0.00 5.34
544 547 0.321996 ACCTTTCTCTTCCTCCGTGC 59.678 55.000 0.00 0.00 0.00 5.34
545 548 1.402984 CGACCTTTCTCTTCCTCCGTG 60.403 57.143 0.00 0.00 0.00 4.94
546 549 0.889306 CGACCTTTCTCTTCCTCCGT 59.111 55.000 0.00 0.00 0.00 4.69
547 550 1.133407 CTCGACCTTTCTCTTCCTCCG 59.867 57.143 0.00 0.00 0.00 4.63
548 551 1.134936 GCTCGACCTTTCTCTTCCTCC 60.135 57.143 0.00 0.00 0.00 4.30
549 552 1.468395 CGCTCGACCTTTCTCTTCCTC 60.468 57.143 0.00 0.00 0.00 3.71
550 553 0.528470 CGCTCGACCTTTCTCTTCCT 59.472 55.000 0.00 0.00 0.00 3.36
551 554 1.079317 GCGCTCGACCTTTCTCTTCC 61.079 60.000 0.00 0.00 0.00 3.46
552 555 1.406970 CGCGCTCGACCTTTCTCTTC 61.407 60.000 5.56 0.00 38.10 2.87
553 556 1.444553 CGCGCTCGACCTTTCTCTT 60.445 57.895 5.56 0.00 38.10 2.85
554 557 2.179517 CGCGCTCGACCTTTCTCT 59.820 61.111 5.56 0.00 38.10 3.10
555 558 2.881352 CCGCGCTCGACCTTTCTC 60.881 66.667 5.56 0.00 38.10 2.87
556 559 3.343788 CTCCGCGCTCGACCTTTCT 62.344 63.158 5.56 0.00 38.10 2.52
557 560 2.881352 CTCCGCGCTCGACCTTTC 60.881 66.667 5.56 0.00 38.10 2.62
558 561 3.371063 TCTCCGCGCTCGACCTTT 61.371 61.111 5.56 0.00 38.10 3.11
559 562 4.117661 GTCTCCGCGCTCGACCTT 62.118 66.667 5.56 0.00 38.10 3.50
560 563 3.677284 TAGTCTCCGCGCTCGACCT 62.677 63.158 5.56 0.00 38.10 3.85
561 564 3.170810 CTAGTCTCCGCGCTCGACC 62.171 68.421 5.56 0.00 38.10 4.79
562 565 2.325166 CTAGTCTCCGCGCTCGAC 59.675 66.667 5.56 9.13 38.10 4.20
563 566 2.895865 CCTAGTCTCCGCGCTCGA 60.896 66.667 5.56 0.00 38.10 4.04
564 567 4.615834 GCCTAGTCTCCGCGCTCG 62.616 72.222 5.56 0.00 0.00 5.03
565 568 4.615834 CGCCTAGTCTCCGCGCTC 62.616 72.222 5.56 0.00 39.39 5.03
569 572 2.278013 CGAACGCCTAGTCTCCGC 60.278 66.667 0.00 0.00 0.00 5.54
570 573 2.408022 CCGAACGCCTAGTCTCCG 59.592 66.667 0.00 0.00 0.00 4.63
571 574 2.104530 GCCGAACGCCTAGTCTCC 59.895 66.667 0.00 0.00 0.00 3.71
572 575 2.278013 CGCCGAACGCCTAGTCTC 60.278 66.667 0.00 0.00 33.16 3.36
573 576 3.823330 CCGCCGAACGCCTAGTCT 61.823 66.667 0.00 0.00 41.76 3.24
616 619 3.220999 TTGACCCACCGCTGTCGAG 62.221 63.158 0.00 0.00 38.10 4.04
617 620 3.228017 TTGACCCACCGCTGTCGA 61.228 61.111 0.00 0.00 38.10 4.20
618 621 3.041940 GTTGACCCACCGCTGTCG 61.042 66.667 0.00 0.00 34.18 4.35
619 622 2.668550 GGTTGACCCACCGCTGTC 60.669 66.667 0.00 0.00 0.00 3.51
620 623 3.484806 TGGTTGACCCACCGCTGT 61.485 61.111 0.00 0.00 40.09 4.40
628 631 4.406003 ACAGATCTACTACATGGTTGACCC 59.594 45.833 0.00 0.00 34.29 4.46
629 632 5.599999 ACAGATCTACTACATGGTTGACC 57.400 43.478 0.00 0.00 0.00 4.02
630 633 7.569639 TCTACAGATCTACTACATGGTTGAC 57.430 40.000 0.00 0.00 0.00 3.18
631 634 7.255625 GCATCTACAGATCTACTACATGGTTGA 60.256 40.741 0.00 0.00 31.21 3.18
632 635 6.865726 GCATCTACAGATCTACTACATGGTTG 59.134 42.308 0.00 0.00 31.21 3.77
633 636 6.551227 TGCATCTACAGATCTACTACATGGTT 59.449 38.462 0.00 0.00 31.21 3.67
634 637 6.071320 TGCATCTACAGATCTACTACATGGT 58.929 40.000 0.00 0.00 31.21 3.55
635 638 6.581171 TGCATCTACAGATCTACTACATGG 57.419 41.667 0.00 0.00 31.21 3.66
636 639 6.966066 CGATGCATCTACAGATCTACTACATG 59.034 42.308 23.73 0.00 31.21 3.21
637 640 6.094742 CCGATGCATCTACAGATCTACTACAT 59.905 42.308 23.73 0.00 31.21 2.29
638 641 5.412904 CCGATGCATCTACAGATCTACTACA 59.587 44.000 23.73 0.00 31.21 2.74
639 642 5.163703 CCCGATGCATCTACAGATCTACTAC 60.164 48.000 23.73 0.00 31.21 2.73
640 643 4.944317 CCCGATGCATCTACAGATCTACTA 59.056 45.833 23.73 0.00 31.21 1.82
641 644 3.761218 CCCGATGCATCTACAGATCTACT 59.239 47.826 23.73 0.00 31.21 2.57
642 645 3.674682 GCCCGATGCATCTACAGATCTAC 60.675 52.174 23.73 0.00 40.77 2.59
643 646 2.493675 GCCCGATGCATCTACAGATCTA 59.506 50.000 23.73 0.00 40.77 1.98
644 647 1.274728 GCCCGATGCATCTACAGATCT 59.725 52.381 23.73 0.00 40.77 2.75
645 648 1.274728 AGCCCGATGCATCTACAGATC 59.725 52.381 23.73 6.51 44.83 2.75
646 649 1.001746 CAGCCCGATGCATCTACAGAT 59.998 52.381 23.73 6.14 44.83 2.90
647 650 0.390492 CAGCCCGATGCATCTACAGA 59.610 55.000 23.73 0.00 44.83 3.41
648 651 1.226686 GCAGCCCGATGCATCTACAG 61.227 60.000 23.73 8.60 45.77 2.74
649 652 1.227645 GCAGCCCGATGCATCTACA 60.228 57.895 23.73 0.00 45.77 2.74
650 653 3.647824 GCAGCCCGATGCATCTAC 58.352 61.111 23.73 12.83 45.77 2.59
656 659 2.517875 AGATTGGCAGCCCGATGC 60.518 61.111 9.64 0.00 45.74 3.91
657 660 2.191513 CCAGATTGGCAGCCCGATG 61.192 63.158 9.64 2.40 35.24 3.84
658 661 2.194056 CCAGATTGGCAGCCCGAT 59.806 61.111 9.64 2.58 37.97 4.18
659 662 3.329889 ACCAGATTGGCAGCCCGA 61.330 61.111 9.64 0.00 42.67 5.14
660 663 3.136123 CACCAGATTGGCAGCCCG 61.136 66.667 9.64 0.00 42.67 6.13
661 664 2.036256 ACACCAGATTGGCAGCCC 59.964 61.111 9.64 0.00 42.67 5.19
662 665 2.998279 GCACACCAGATTGGCAGCC 61.998 63.158 3.66 3.66 42.67 4.85
663 666 2.570181 GCACACCAGATTGGCAGC 59.430 61.111 0.00 0.00 42.67 5.25
664 667 1.303888 AGGCACACCAGATTGGCAG 60.304 57.895 0.00 0.00 42.67 4.85
665 668 1.604308 CAGGCACACCAGATTGGCA 60.604 57.895 0.00 0.00 42.67 4.92
666 669 2.998279 GCAGGCACACCAGATTGGC 61.998 63.158 0.00 0.00 42.67 4.52
667 670 0.035152 TAGCAGGCACACCAGATTGG 60.035 55.000 0.00 0.00 45.02 3.16
668 671 1.089920 GTAGCAGGCACACCAGATTG 58.910 55.000 0.00 0.00 39.06 2.67
669 672 0.035056 GGTAGCAGGCACACCAGATT 60.035 55.000 9.42 0.00 39.06 2.40
670 673 0.911525 AGGTAGCAGGCACACCAGAT 60.912 55.000 14.87 0.00 39.06 2.90
671 674 1.536418 AGGTAGCAGGCACACCAGA 60.536 57.895 14.87 0.00 39.06 3.86
672 675 1.376424 CAGGTAGCAGGCACACCAG 60.376 63.158 14.87 5.71 39.06 4.00
673 676 1.705002 AACAGGTAGCAGGCACACCA 61.705 55.000 14.87 0.00 39.06 4.17
674 677 0.537371 AAACAGGTAGCAGGCACACC 60.537 55.000 6.90 6.90 0.00 4.16
675 678 0.593128 CAAACAGGTAGCAGGCACAC 59.407 55.000 0.00 0.00 0.00 3.82
676 679 0.537143 CCAAACAGGTAGCAGGCACA 60.537 55.000 0.00 0.00 0.00 4.57
677 680 1.866853 GCCAAACAGGTAGCAGGCAC 61.867 60.000 0.00 0.00 41.63 5.01
678 681 1.603455 GCCAAACAGGTAGCAGGCA 60.603 57.895 0.00 0.00 41.63 4.75
679 682 1.603455 TGCCAAACAGGTAGCAGGC 60.603 57.895 0.00 0.00 42.32 4.85
680 683 4.819783 TGCCAAACAGGTAGCAGG 57.180 55.556 0.00 0.00 40.61 4.85
703 706 0.108424 CGAGAACTCTGCCTCCTTGG 60.108 60.000 0.41 0.00 39.35 3.61
704 707 0.108424 CCGAGAACTCTGCCTCCTTG 60.108 60.000 0.41 0.00 0.00 3.61
705 708 0.543174 ACCGAGAACTCTGCCTCCTT 60.543 55.000 0.41 0.00 0.00 3.36
706 709 0.543174 AACCGAGAACTCTGCCTCCT 60.543 55.000 0.41 0.00 0.00 3.69
707 710 0.390472 CAACCGAGAACTCTGCCTCC 60.390 60.000 0.41 0.00 0.00 4.30
708 711 0.603569 TCAACCGAGAACTCTGCCTC 59.396 55.000 0.41 0.00 0.00 4.70
709 712 0.318762 GTCAACCGAGAACTCTGCCT 59.681 55.000 0.41 0.00 0.00 4.75
710 713 0.670854 GGTCAACCGAGAACTCTGCC 60.671 60.000 0.41 0.00 0.00 4.85
711 714 0.318762 AGGTCAACCGAGAACTCTGC 59.681 55.000 0.41 0.00 42.08 4.26
712 715 1.341531 ACAGGTCAACCGAGAACTCTG 59.658 52.381 0.41 0.00 42.08 3.35
713 716 1.705873 ACAGGTCAACCGAGAACTCT 58.294 50.000 0.41 0.00 42.08 3.24
714 717 2.135933 CAACAGGTCAACCGAGAACTC 58.864 52.381 0.00 0.00 42.08 3.01
715 718 1.485066 ACAACAGGTCAACCGAGAACT 59.515 47.619 0.00 0.00 42.08 3.01
716 719 1.949465 ACAACAGGTCAACCGAGAAC 58.051 50.000 0.00 0.00 42.08 3.01
717 720 2.702592 AACAACAGGTCAACCGAGAA 57.297 45.000 0.00 0.00 42.08 2.87
718 721 2.702592 AAACAACAGGTCAACCGAGA 57.297 45.000 0.00 0.00 42.08 4.04
719 722 3.302870 CGTTAAACAACAGGTCAACCGAG 60.303 47.826 0.00 0.00 42.08 4.63
720 723 2.608546 CGTTAAACAACAGGTCAACCGA 59.391 45.455 0.00 0.00 42.08 4.69
721 724 2.352342 ACGTTAAACAACAGGTCAACCG 59.648 45.455 0.00 0.00 42.08 4.44
722 725 3.242837 GGACGTTAAACAACAGGTCAACC 60.243 47.826 0.00 0.00 0.00 3.77
723 726 3.544637 CGGACGTTAAACAACAGGTCAAC 60.545 47.826 0.00 0.00 0.00 3.18
724 727 2.608546 CGGACGTTAAACAACAGGTCAA 59.391 45.455 0.00 0.00 0.00 3.18
725 728 2.203401 CGGACGTTAAACAACAGGTCA 58.797 47.619 0.00 0.00 0.00 4.02
726 729 2.204237 ACGGACGTTAAACAACAGGTC 58.796 47.619 0.00 0.00 0.00 3.85
727 730 2.159057 AGACGGACGTTAAACAACAGGT 60.159 45.455 0.00 0.00 0.00 4.00
728 731 2.473984 GAGACGGACGTTAAACAACAGG 59.526 50.000 0.00 0.00 0.00 4.00
729 732 3.181774 CAGAGACGGACGTTAAACAACAG 59.818 47.826 0.00 0.00 0.00 3.16
730 733 3.117794 CAGAGACGGACGTTAAACAACA 58.882 45.455 0.00 0.00 0.00 3.33
731 734 2.097056 GCAGAGACGGACGTTAAACAAC 60.097 50.000 0.00 0.00 0.00 3.32
732 735 2.129607 GCAGAGACGGACGTTAAACAA 58.870 47.619 0.00 0.00 0.00 2.83
733 736 1.603678 GGCAGAGACGGACGTTAAACA 60.604 52.381 0.00 0.00 0.00 2.83
734 737 1.066136 GGCAGAGACGGACGTTAAAC 58.934 55.000 0.00 0.00 0.00 2.01
735 738 0.387622 CGGCAGAGACGGACGTTAAA 60.388 55.000 0.00 0.00 0.00 1.52
736 739 1.210931 CGGCAGAGACGGACGTTAA 59.789 57.895 0.00 0.00 0.00 2.01
737 740 1.915614 GACGGCAGAGACGGACGTTA 61.916 60.000 4.26 0.00 39.02 3.18
738 741 3.264866 GACGGCAGAGACGGACGTT 62.265 63.158 4.26 0.00 39.02 3.99
739 742 3.735029 GACGGCAGAGACGGACGT 61.735 66.667 2.24 2.24 39.02 4.34
740 743 4.477975 GGACGGCAGAGACGGACG 62.478 72.222 0.00 0.00 39.02 4.79
741 744 2.227089 AATGGACGGCAGAGACGGAC 62.227 60.000 0.00 0.00 39.02 4.79
742 745 1.945354 GAATGGACGGCAGAGACGGA 61.945 60.000 0.00 0.00 39.02 4.69
743 746 1.519455 GAATGGACGGCAGAGACGG 60.519 63.158 0.00 0.00 39.02 4.79
744 747 0.803768 CAGAATGGACGGCAGAGACG 60.804 60.000 0.00 0.00 41.40 4.18
745 748 1.086634 GCAGAATGGACGGCAGAGAC 61.087 60.000 0.00 0.00 35.86 3.36
746 749 1.219124 GCAGAATGGACGGCAGAGA 59.781 57.895 0.00 0.00 35.86 3.10
747 750 1.088340 CAGCAGAATGGACGGCAGAG 61.088 60.000 0.00 0.00 35.86 3.35
748 751 1.078918 CAGCAGAATGGACGGCAGA 60.079 57.895 0.00 0.00 35.86 4.26
749 752 2.110967 CCAGCAGAATGGACGGCAG 61.111 63.158 0.00 0.00 43.57 4.85
750 753 2.046023 CCAGCAGAATGGACGGCA 60.046 61.111 0.00 0.00 43.57 5.69
751 754 3.512516 GCCAGCAGAATGGACGGC 61.513 66.667 0.00 0.00 43.57 5.68
752 755 2.825836 GGCCAGCAGAATGGACGG 60.826 66.667 0.00 0.00 43.57 4.79
755 758 2.046023 CGTGGCCAGCAGAATGGA 60.046 61.111 5.11 0.00 43.57 3.41
756 759 2.360350 ACGTGGCCAGCAGAATGG 60.360 61.111 5.11 0.00 43.72 3.16
757 760 2.693762 CCACGTGGCCAGCAGAATG 61.694 63.158 24.02 0.00 40.87 2.67
758 761 2.360350 CCACGTGGCCAGCAGAAT 60.360 61.111 24.02 0.00 0.00 2.40
768 771 2.666190 CTGTCAGGTGCCACGTGG 60.666 66.667 30.66 30.66 34.95 4.94
769 772 2.108976 ACTGTCAGGTGCCACGTG 59.891 61.111 9.08 9.08 35.48 4.49
770 773 2.108976 CACTGTCAGGTGCCACGT 59.891 61.111 4.53 0.00 0.00 4.49
771 774 2.666190 CCACTGTCAGGTGCCACG 60.666 66.667 4.53 0.00 36.03 4.94
772 775 2.281761 CCCACTGTCAGGTGCCAC 60.282 66.667 4.53 0.00 36.03 5.01
773 776 2.447572 TCCCACTGTCAGGTGCCA 60.448 61.111 4.53 0.00 36.03 4.92
774 777 2.032681 GTCCCACTGTCAGGTGCC 59.967 66.667 4.53 0.00 36.03 5.01
775 778 2.032681 GGTCCCACTGTCAGGTGC 59.967 66.667 4.53 0.00 36.03 5.01
776 779 1.492133 ATGGGTCCCACTGTCAGGTG 61.492 60.000 14.57 0.47 35.80 4.00
777 780 1.151810 ATGGGTCCCACTGTCAGGT 60.152 57.895 14.57 0.00 35.80 4.00
778 781 1.604378 GATGGGTCCCACTGTCAGG 59.396 63.158 14.57 0.00 35.80 3.86
779 782 1.604378 GGATGGGTCCCACTGTCAG 59.396 63.158 14.57 0.00 38.69 3.51
780 783 2.290287 CGGATGGGTCCCACTGTCA 61.290 63.158 14.57 0.00 41.83 3.58
781 784 2.240162 GACGGATGGGTCCCACTGTC 62.240 65.000 24.69 24.69 41.83 3.51
782 785 2.203938 ACGGATGGGTCCCACTGT 60.204 61.111 14.57 15.16 41.83 3.55
783 786 2.244117 CTGACGGATGGGTCCCACTG 62.244 65.000 14.57 14.51 41.83 3.66
784 787 1.990060 CTGACGGATGGGTCCCACT 60.990 63.158 14.57 2.24 41.83 4.00
785 788 1.338136 ATCTGACGGATGGGTCCCAC 61.338 60.000 14.57 7.36 41.83 4.61
786 789 0.620410 AATCTGACGGATGGGTCCCA 60.620 55.000 14.64 14.64 41.83 4.37
787 790 0.546598 AAATCTGACGGATGGGTCCC 59.453 55.000 0.00 0.00 41.83 4.46
788 791 1.668419 CAAATCTGACGGATGGGTCC 58.332 55.000 0.00 0.00 41.40 4.46
789 792 1.017387 GCAAATCTGACGGATGGGTC 58.983 55.000 0.00 0.00 34.45 4.46
790 793 0.327924 TGCAAATCTGACGGATGGGT 59.672 50.000 0.00 0.00 34.45 4.51
791 794 1.683943 ATGCAAATCTGACGGATGGG 58.316 50.000 0.00 0.00 34.45 4.00
792 795 4.898829 TTAATGCAAATCTGACGGATGG 57.101 40.909 0.00 0.00 34.45 3.51
793 796 4.730042 CGTTTAATGCAAATCTGACGGATG 59.270 41.667 0.00 0.00 34.45 3.51
794 797 4.634004 TCGTTTAATGCAAATCTGACGGAT 59.366 37.500 0.00 0.00 35.97 4.18
795 798 3.997681 TCGTTTAATGCAAATCTGACGGA 59.002 39.130 0.00 0.00 0.00 4.69
796 799 4.088648 GTCGTTTAATGCAAATCTGACGG 58.911 43.478 0.00 0.00 0.00 4.79
797 800 4.957971 AGTCGTTTAATGCAAATCTGACG 58.042 39.130 0.00 0.00 33.95 4.35
798 801 6.170675 AGAGTCGTTTAATGCAAATCTGAC 57.829 37.500 0.00 0.00 0.00 3.51
799 802 7.899178 TTAGAGTCGTTTAATGCAAATCTGA 57.101 32.000 0.00 0.00 0.00 3.27
800 803 8.390354 TGATTAGAGTCGTTTAATGCAAATCTG 58.610 33.333 0.00 0.00 0.00 2.90
801 804 8.492673 TGATTAGAGTCGTTTAATGCAAATCT 57.507 30.769 0.00 0.00 0.00 2.40
802 805 9.722056 AATGATTAGAGTCGTTTAATGCAAATC 57.278 29.630 0.00 0.00 0.00 2.17
803 806 9.722056 GAATGATTAGAGTCGTTTAATGCAAAT 57.278 29.630 0.00 0.00 0.00 2.32
804 807 8.726068 TGAATGATTAGAGTCGTTTAATGCAAA 58.274 29.630 0.00 0.00 0.00 3.68
805 808 8.262715 TGAATGATTAGAGTCGTTTAATGCAA 57.737 30.769 0.00 0.00 0.00 4.08
806 809 7.841915 TGAATGATTAGAGTCGTTTAATGCA 57.158 32.000 0.00 0.00 0.00 3.96
807 810 9.374960 GATTGAATGATTAGAGTCGTTTAATGC 57.625 33.333 4.31 0.00 35.03 3.56
810 813 8.604035 GCTGATTGAATGATTAGAGTCGTTTAA 58.396 33.333 0.00 0.00 30.41 1.52
811 814 7.043391 CGCTGATTGAATGATTAGAGTCGTTTA 60.043 37.037 0.00 0.00 0.00 2.01
812 815 6.237942 CGCTGATTGAATGATTAGAGTCGTTT 60.238 38.462 0.00 0.00 0.00 3.60
813 816 5.233050 CGCTGATTGAATGATTAGAGTCGTT 59.767 40.000 0.00 0.00 0.00 3.85
814 817 4.742167 CGCTGATTGAATGATTAGAGTCGT 59.258 41.667 0.00 0.00 0.00 4.34
815 818 4.742167 ACGCTGATTGAATGATTAGAGTCG 59.258 41.667 0.00 0.00 0.00 4.18
816 819 6.595772 AACGCTGATTGAATGATTAGAGTC 57.404 37.500 0.00 0.00 28.33 3.36
817 820 6.992063 AAACGCTGATTGAATGATTAGAGT 57.008 33.333 0.00 0.00 29.36 3.24
839 842 2.677199 TGCGTTGACAGTTTGCAAAAA 58.323 38.095 14.67 0.81 31.69 1.94
840 843 2.354109 TGCGTTGACAGTTTGCAAAA 57.646 40.000 14.67 0.00 31.69 2.44
841 844 2.354109 TTGCGTTGACAGTTTGCAAA 57.646 40.000 8.05 8.05 42.04 3.68
843 846 2.191802 CAATTGCGTTGACAGTTTGCA 58.808 42.857 0.00 0.00 40.37 4.08
844 847 2.034675 CACAATTGCGTTGACAGTTTGC 60.035 45.455 5.05 0.00 40.37 3.68
845 848 3.433709 TCACAATTGCGTTGACAGTTTG 58.566 40.909 5.05 0.00 40.37 2.93
846 849 3.773860 TCACAATTGCGTTGACAGTTT 57.226 38.095 5.05 0.00 40.37 2.66
847 850 3.550639 CCATCACAATTGCGTTGACAGTT 60.551 43.478 5.05 0.00 40.37 3.16
848 851 2.030893 CCATCACAATTGCGTTGACAGT 60.031 45.455 5.05 0.00 40.37 3.55
849 852 2.587956 CCATCACAATTGCGTTGACAG 58.412 47.619 5.05 0.00 40.37 3.51
850 853 1.269174 CCCATCACAATTGCGTTGACA 59.731 47.619 5.05 0.00 40.37 3.58
851 854 1.269448 ACCCATCACAATTGCGTTGAC 59.731 47.619 5.05 0.00 40.37 3.18
852 855 1.614996 ACCCATCACAATTGCGTTGA 58.385 45.000 5.05 2.29 40.37 3.18
853 856 2.437200 AACCCATCACAATTGCGTTG 57.563 45.000 5.05 1.30 43.64 4.10
854 857 3.467374 AAAACCCATCACAATTGCGTT 57.533 38.095 5.05 0.00 0.00 4.84
855 858 3.129871 CAAAAACCCATCACAATTGCGT 58.870 40.909 5.05 0.00 0.00 5.24
856 859 3.388308 TCAAAAACCCATCACAATTGCG 58.612 40.909 5.05 0.00 0.00 4.85
857 860 5.747951 TTTCAAAAACCCATCACAATTGC 57.252 34.783 5.05 0.00 0.00 3.56
910 913 1.562475 GCACCACAATTAGGGACCCTA 59.438 52.381 16.95 16.95 34.61 3.53
911 914 0.331616 GCACCACAATTAGGGACCCT 59.668 55.000 19.48 19.48 37.71 4.34
912 915 0.331616 AGCACCACAATTAGGGACCC 59.668 55.000 0.59 0.59 0.00 4.46
913 916 2.215942 AAGCACCACAATTAGGGACC 57.784 50.000 1.80 0.00 0.00 4.46
914 917 4.600692 AAAAAGCACCACAATTAGGGAC 57.399 40.909 1.80 0.00 0.00 4.46
932 935 3.610585 CGCGAGGGAGTAAATTGCAAAAA 60.611 43.478 1.71 0.00 0.00 1.94
933 936 2.095466 CGCGAGGGAGTAAATTGCAAAA 60.095 45.455 1.71 0.00 0.00 2.44
934 937 1.466950 CGCGAGGGAGTAAATTGCAAA 59.533 47.619 1.71 0.00 0.00 3.68
935 938 1.083489 CGCGAGGGAGTAAATTGCAA 58.917 50.000 0.00 0.00 0.00 4.08
936 939 2.762360 CGCGAGGGAGTAAATTGCA 58.238 52.632 0.00 0.00 0.00 4.08
997 1000 0.886490 CCTCGGTGCTTATCCATGGC 60.886 60.000 6.96 0.00 0.00 4.40
1005 1008 0.742990 CCATTTCGCCTCGGTGCTTA 60.743 55.000 0.00 0.00 0.00 3.09
1192 1198 1.456287 GGTTGGGGAAGCTGACACT 59.544 57.895 0.00 0.00 0.00 3.55
1570 1630 4.293415 CTCTGTTCCACTTGCAAATTGAC 58.707 43.478 0.00 0.00 0.00 3.18
1586 1659 7.394359 ACCATTATTAATTCACACAGCTCTGTT 59.606 33.333 0.00 0.00 42.83 3.16
1632 1711 1.901591 ATGCACCCAAGACAGACAAG 58.098 50.000 0.00 0.00 0.00 3.16
1635 1714 0.242017 GCAATGCACCCAAGACAGAC 59.758 55.000 0.00 0.00 0.00 3.51
1680 1832 1.631405 CCAAAATCTGGGCACTTGGA 58.369 50.000 0.00 0.00 42.17 3.53
1688 1840 1.117150 CTCCATGGCCAAAATCTGGG 58.883 55.000 19.90 8.89 46.54 4.45
1722 1874 1.334054 CTTTCTTGACAGCATTGCGC 58.666 50.000 0.00 0.00 42.91 6.09
1801 1953 8.031864 CAGCTCTGACCATGTTAGTTATATAGG 58.968 40.741 0.00 0.00 0.00 2.57
1802 1954 8.580720 ACAGCTCTGACCATGTTAGTTATATAG 58.419 37.037 3.60 0.00 0.00 1.31
1809 2590 2.899900 TCACAGCTCTGACCATGTTAGT 59.100 45.455 3.60 0.00 0.00 2.24
1813 2594 2.303890 TGATTCACAGCTCTGACCATGT 59.696 45.455 3.60 0.00 0.00 3.21
1851 2635 2.207501 AATAGCAGCAGCAGGCCAGT 62.208 55.000 5.01 0.00 46.50 4.00
1955 2890 0.824759 GACTCCTCAAGTATGCGGGT 59.175 55.000 0.00 0.00 38.74 5.28
2234 3393 2.540383 TGGGCTTCTGAAGAGCTCTAA 58.460 47.619 18.59 6.58 0.00 2.10
2339 3498 2.559440 AGAGATCATTTCTGCTTCGGC 58.441 47.619 0.00 0.00 42.19 5.54
2360 3519 9.953565 TTGTACAAGAGGTGCTAATTAACTTAT 57.046 29.630 3.59 0.00 32.71 1.73
2424 3590 3.654273 CCAAATAGTCTCCCCAGGTCTA 58.346 50.000 0.00 0.00 0.00 2.59
2437 3603 4.813027 CATTTCACAGCTTGCCAAATAGT 58.187 39.130 0.00 0.00 0.00 2.12
2438 3604 3.615496 GCATTTCACAGCTTGCCAAATAG 59.385 43.478 0.00 0.00 0.00 1.73
2439 3605 3.258872 AGCATTTCACAGCTTGCCAAATA 59.741 39.130 2.23 0.00 38.01 1.40
2440 3606 2.038033 AGCATTTCACAGCTTGCCAAAT 59.962 40.909 2.23 0.00 38.01 2.32
2472 3644 4.374399 TCGACCAACCTAAAACTTGACTC 58.626 43.478 0.00 0.00 0.00 3.36
2529 3701 7.334421 GCAGAAAGACCATTACAATTGACTAGA 59.666 37.037 13.59 0.00 0.00 2.43
2561 3780 6.864685 ACATGACATACTGAAATTGCAGTTTG 59.135 34.615 26.63 26.63 46.42 2.93
2562 3781 6.985117 ACATGACATACTGAAATTGCAGTTT 58.015 32.000 24.19 13.86 46.42 2.66
2583 3802 6.389830 TCATGCTGACAACAAAAACTACAT 57.610 33.333 0.00 0.00 0.00 2.29
2625 3844 2.439507 TCTTCTGAGCTGAAACCAACCT 59.560 45.455 0.00 0.00 0.00 3.50
2642 3861 9.654663 AATTGTGGTAATCAGTTAGTACTCTTC 57.345 33.333 0.00 0.00 30.26 2.87
2682 3901 6.728200 TGTAGCAGAAGTTTGTGAAAATCAG 58.272 36.000 0.00 0.00 0.00 2.90
2722 3942 5.300752 GCACTATGGCAGTAATCAGTACAT 58.699 41.667 0.00 0.00 34.98 2.29
2754 3974 4.437682 TGTGAAGGTTTCCAACATCTCT 57.562 40.909 0.00 0.00 0.00 3.10
2820 4040 2.034878 TCCATGCTAGTAGCTCACCTG 58.965 52.381 22.34 11.53 42.97 4.00
2821 4041 2.432510 GTTCCATGCTAGTAGCTCACCT 59.567 50.000 22.34 0.51 42.97 4.00
2880 4140 1.154197 CACAGTGTGCTCAGGACATG 58.846 55.000 10.97 4.84 0.00 3.21
2940 4200 5.353938 CACAAGGCTTTGATAATCCCATTG 58.646 41.667 16.36 0.00 37.73 2.82
3008 4403 8.821686 TGTGATGTATGTGAAATAAATCCCTT 57.178 30.769 0.00 0.00 0.00 3.95
3010 4405 8.849168 TCATGTGATGTATGTGAAATAAATCCC 58.151 33.333 0.00 0.00 0.00 3.85
3026 4445 6.299141 ACCAAGTTAGTTCTTCATGTGATGT 58.701 36.000 0.00 0.00 0.00 3.06
3107 4574 3.464907 CATCAGCAGAACTAGTCCCATG 58.535 50.000 0.00 0.00 0.00 3.66
3112 4579 3.129871 GCATCCATCAGCAGAACTAGTC 58.870 50.000 0.00 0.00 0.00 2.59
3168 4635 1.201429 AGACCCTAACACCCAGCTGG 61.201 60.000 26.87 26.87 41.37 4.85
3197 4664 8.088981 ACTAGAAGAAACAACCACATACACTAG 58.911 37.037 0.00 0.00 0.00 2.57
3204 4671 3.821033 GGCACTAGAAGAAACAACCACAT 59.179 43.478 0.00 0.00 0.00 3.21
3206 4673 3.251004 CAGGCACTAGAAGAAACAACCAC 59.749 47.826 0.00 0.00 36.02 4.16
3207 4674 3.476552 CAGGCACTAGAAGAAACAACCA 58.523 45.455 0.00 0.00 36.02 3.67
3208 4675 2.226674 GCAGGCACTAGAAGAAACAACC 59.773 50.000 0.00 0.00 36.02 3.77
3209 4676 2.878406 TGCAGGCACTAGAAGAAACAAC 59.122 45.455 0.00 0.00 36.02 3.32
3210 4677 3.207265 TGCAGGCACTAGAAGAAACAA 57.793 42.857 0.00 0.00 36.02 2.83
3211 4678 2.928801 TGCAGGCACTAGAAGAAACA 57.071 45.000 0.00 0.00 36.02 2.83
3212 4679 3.373439 CAGATGCAGGCACTAGAAGAAAC 59.627 47.826 0.00 0.00 36.02 2.78
3213 4680 3.008375 ACAGATGCAGGCACTAGAAGAAA 59.992 43.478 0.00 0.00 36.02 2.52
3214 4681 2.568956 ACAGATGCAGGCACTAGAAGAA 59.431 45.455 0.00 0.00 36.02 2.52
3215 4682 2.093816 CACAGATGCAGGCACTAGAAGA 60.094 50.000 0.00 0.00 36.02 2.87
3216 4683 2.277969 CACAGATGCAGGCACTAGAAG 58.722 52.381 0.00 0.00 36.02 2.85
3217 4684 1.625315 ACACAGATGCAGGCACTAGAA 59.375 47.619 0.00 0.00 36.02 2.10
3218 4685 1.269958 ACACAGATGCAGGCACTAGA 58.730 50.000 0.00 0.00 36.02 2.43
3219 4686 1.736126 CAACACAGATGCAGGCACTAG 59.264 52.381 0.00 0.00 36.02 2.57
3220 4687 1.347378 TCAACACAGATGCAGGCACTA 59.653 47.619 0.00 0.00 36.02 2.74
3221 4688 0.109153 TCAACACAGATGCAGGCACT 59.891 50.000 0.00 0.00 43.88 4.40
3222 4689 0.520404 CTCAACACAGATGCAGGCAC 59.480 55.000 0.00 0.00 0.00 5.01
3223 4690 0.397564 TCTCAACACAGATGCAGGCA 59.602 50.000 0.00 0.00 0.00 4.75
3224 4691 1.085091 CTCTCAACACAGATGCAGGC 58.915 55.000 0.00 0.00 0.00 4.85
3225 4692 2.233186 TCTCTCTCAACACAGATGCAGG 59.767 50.000 0.00 0.00 0.00 4.85
3226 4693 3.056678 AGTCTCTCTCAACACAGATGCAG 60.057 47.826 0.00 0.00 0.00 4.41
3227 4694 2.896044 AGTCTCTCTCAACACAGATGCA 59.104 45.455 0.00 0.00 0.00 3.96
3228 4695 3.591196 AGTCTCTCTCAACACAGATGC 57.409 47.619 0.00 0.00 0.00 3.91
3245 4712 8.693625 AGACACAACCTAAACCTACATATAGTC 58.306 37.037 0.00 0.00 0.00 2.59
3268 4735 3.751698 CCCTAACACTAGCAACCAAAGAC 59.248 47.826 0.00 0.00 0.00 3.01
3274 4741 4.443034 CCATAGACCCTAACACTAGCAACC 60.443 50.000 0.00 0.00 0.00 3.77
3294 4764 2.157738 GACAGCAGAAGAAACAGCCAT 58.842 47.619 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.