Multiple sequence alignment - TraesCS3B01G501800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G501800 chr3B 100.000 2644 0 0 1 2644 745588491 745591134 0.000000e+00 4883.0
1 TraesCS3B01G501800 chr6B 94.223 2060 96 12 1 2040 643872617 643870561 0.000000e+00 3123.0
2 TraesCS3B01G501800 chr6B 93.710 2051 110 11 1 2041 711404243 711406284 0.000000e+00 3055.0
3 TraesCS3B01G501800 chr6B 92.052 2076 126 20 1 2040 643648136 643650208 0.000000e+00 2883.0
4 TraesCS3B01G501800 chr6B 91.413 2073 140 20 1 2040 618934085 618936152 0.000000e+00 2808.0
5 TraesCS3B01G501800 chr6B 90.222 1309 110 8 1 1293 88614815 88613509 0.000000e+00 1692.0
6 TraesCS3B01G501800 chr6B 82.353 68 10 2 2516 2582 32231805 32231871 1.020000e-04 58.4
7 TraesCS3B01G501800 chr1D 93.816 2070 96 9 1 2040 209755494 209757561 0.000000e+00 3085.0
8 TraesCS3B01G501800 chr1D 91.981 2070 134 15 1 2041 423892979 423895045 0.000000e+00 2874.0
9 TraesCS3B01G501800 chr1B 93.586 2058 112 7 1 2040 311136308 311134253 0.000000e+00 3051.0
10 TraesCS3B01G501800 chr1B 94.007 2019 95 9 1 2014 566609433 566611430 0.000000e+00 3035.0
11 TraesCS3B01G501800 chr5B 92.348 2078 117 10 1 2040 693958148 693956075 0.000000e+00 2918.0
12 TraesCS3B01G501800 chr5B 92.528 2061 109 13 1 2040 369340188 369338152 0.000000e+00 2911.0
13 TraesCS3B01G501800 chr5B 92.077 2070 116 12 1 2040 202892854 202890803 0.000000e+00 2870.0
14 TraesCS3B01G501800 chr5B 89.583 48 4 1 2527 2573 45205886 45205933 2.840000e-05 60.2
15 TraesCS3B01G501800 chr7B 92.868 2005 102 10 54 2040 639855661 639857642 0.000000e+00 2872.0
16 TraesCS3B01G501800 chr3D 90.828 447 36 3 2070 2515 560939037 560939479 6.300000e-166 593.0
17 TraesCS3B01G501800 chr3A 92.012 338 24 1 2178 2515 696992106 696992440 3.080000e-129 472.0
18 TraesCS3B01G501800 chr2B 89.080 348 27 2 1 337 412260434 412260781 3.150000e-114 422.0
19 TraesCS3B01G501800 chr5D 76.190 273 48 10 2220 2485 557504770 557505032 7.680000e-26 128.0
20 TraesCS3B01G501800 chr4A 85.455 110 10 1 2376 2485 609564568 609564671 2.780000e-20 110.0
21 TraesCS3B01G501800 chr1A 88.889 63 7 0 2520 2582 297847538 297847476 7.850000e-11 78.7
22 TraesCS3B01G501800 chr6D 83.824 68 9 2 2516 2582 17953323 17953389 2.200000e-06 63.9
23 TraesCS3B01G501800 chr2D 87.500 56 3 4 2520 2573 524041109 524041056 7.900000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G501800 chr3B 745588491 745591134 2643 False 4883 4883 100.000 1 2644 1 chr3B.!!$F1 2643
1 TraesCS3B01G501800 chr6B 643870561 643872617 2056 True 3123 3123 94.223 1 2040 1 chr6B.!!$R2 2039
2 TraesCS3B01G501800 chr6B 711404243 711406284 2041 False 3055 3055 93.710 1 2041 1 chr6B.!!$F4 2040
3 TraesCS3B01G501800 chr6B 643648136 643650208 2072 False 2883 2883 92.052 1 2040 1 chr6B.!!$F3 2039
4 TraesCS3B01G501800 chr6B 618934085 618936152 2067 False 2808 2808 91.413 1 2040 1 chr6B.!!$F2 2039
5 TraesCS3B01G501800 chr6B 88613509 88614815 1306 True 1692 1692 90.222 1 1293 1 chr6B.!!$R1 1292
6 TraesCS3B01G501800 chr1D 209755494 209757561 2067 False 3085 3085 93.816 1 2040 1 chr1D.!!$F1 2039
7 TraesCS3B01G501800 chr1D 423892979 423895045 2066 False 2874 2874 91.981 1 2041 1 chr1D.!!$F2 2040
8 TraesCS3B01G501800 chr1B 311134253 311136308 2055 True 3051 3051 93.586 1 2040 1 chr1B.!!$R1 2039
9 TraesCS3B01G501800 chr1B 566609433 566611430 1997 False 3035 3035 94.007 1 2014 1 chr1B.!!$F1 2013
10 TraesCS3B01G501800 chr5B 693956075 693958148 2073 True 2918 2918 92.348 1 2040 1 chr5B.!!$R3 2039
11 TraesCS3B01G501800 chr5B 369338152 369340188 2036 True 2911 2911 92.528 1 2040 1 chr5B.!!$R2 2039
12 TraesCS3B01G501800 chr5B 202890803 202892854 2051 True 2870 2870 92.077 1 2040 1 chr5B.!!$R1 2039
13 TraesCS3B01G501800 chr7B 639855661 639857642 1981 False 2872 2872 92.868 54 2040 1 chr7B.!!$F1 1986

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.46187 CCGAAATCCATCACTGGCGA 60.462 55.0 0.0 0.0 42.8 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2190 0.526524 GGTCGATTGCTCGGTCTCTG 60.527 60.0 0.0 0.0 45.1 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.257743 CAGAGGAAGAAGACCACCGA 58.742 55.000 0.00 0.00 0.00 4.69
48 49 2.037251 CAGAGGAAGAAGACCACCGAAA 59.963 50.000 0.00 0.00 0.00 3.46
62 63 0.461870 CCGAAATCCATCACTGGCGA 60.462 55.000 0.00 0.00 42.80 5.54
106 108 0.979187 GACCACCGGACTCCCCAATA 60.979 60.000 9.46 0.00 34.14 1.90
148 169 3.885724 TCCACATGAACGCTAGATTCA 57.114 42.857 11.10 11.10 40.25 2.57
179 200 1.802337 TAGATTCGATCCACGGCGGG 61.802 60.000 13.24 7.16 42.82 6.13
287 381 3.274383 GGATTGGGGGATAGGGGAATAA 58.726 50.000 0.00 0.00 0.00 1.40
573 679 0.889994 TATACTGTGGCACGTCGGTT 59.110 50.000 13.77 0.00 0.00 4.44
659 765 1.153107 TGATTCATGGCCCAGCGAG 60.153 57.895 0.00 0.00 0.00 5.03
685 791 4.722700 ACTGCCATCGCGCCCTTT 62.723 61.111 0.00 0.00 38.08 3.11
1248 1370 3.473647 CGAGGGCATGGAGGAGCA 61.474 66.667 0.00 0.00 0.00 4.26
1285 1409 0.606604 ACAACTACGGCCACTACCAG 59.393 55.000 2.24 0.00 0.00 4.00
1286 1410 0.606604 CAACTACGGCCACTACCAGT 59.393 55.000 2.24 0.00 0.00 4.00
1297 1421 2.091278 CCACTACCAGTAGGAGGATGGA 60.091 54.545 9.53 0.00 37.54 3.41
1298 1422 3.226777 CACTACCAGTAGGAGGATGGAG 58.773 54.545 9.53 0.00 37.54 3.86
1334 1459 0.321653 GGTCATCCTTGCACCGAAGT 60.322 55.000 0.00 0.00 0.00 3.01
1416 1541 0.468226 AAGCTCAGGAACAACACCGA 59.532 50.000 0.00 0.00 0.00 4.69
1488 1613 3.643554 GGGTTGGGCCACCTACGT 61.644 66.667 19.97 0.00 42.49 3.57
1554 1679 1.599606 CTCACTCCCGACACCCTCAG 61.600 65.000 0.00 0.00 0.00 3.35
1641 1766 3.399181 CGCCAAGGAGTAGGGCCA 61.399 66.667 6.18 0.00 44.90 5.36
1819 1961 2.568623 AGCCAAAGAGGTTACCACAG 57.431 50.000 3.51 0.00 40.61 3.66
1951 2100 4.244066 GCAACCAAACAACATGCATATGA 58.756 39.130 16.23 0.00 37.73 2.15
2006 2155 2.418746 GGTGGAGAAGTGTATGCGATGT 60.419 50.000 0.00 0.00 0.00 3.06
2014 2163 2.956333 AGTGTATGCGATGTAGGCACTA 59.044 45.455 0.00 0.00 44.23 2.74
2024 2173 4.617959 GATGTAGGCACTATAGCAAACGA 58.382 43.478 0.00 0.00 45.60 3.85
2035 2184 4.846779 ATAGCAAACGACAACCAAACAT 57.153 36.364 0.00 0.00 0.00 2.71
2041 2190 1.671166 GACAACCAAACATGCCCCC 59.329 57.895 0.00 0.00 0.00 5.40
2042 2191 1.074926 ACAACCAAACATGCCCCCA 60.075 52.632 0.00 0.00 0.00 4.96
2043 2192 1.120795 ACAACCAAACATGCCCCCAG 61.121 55.000 0.00 0.00 0.00 4.45
2044 2193 0.831288 CAACCAAACATGCCCCCAGA 60.831 55.000 0.00 0.00 0.00 3.86
2045 2194 0.542702 AACCAAACATGCCCCCAGAG 60.543 55.000 0.00 0.00 0.00 3.35
2046 2195 1.383799 CCAAACATGCCCCCAGAGA 59.616 57.895 0.00 0.00 0.00 3.10
2047 2196 0.967380 CCAAACATGCCCCCAGAGAC 60.967 60.000 0.00 0.00 0.00 3.36
2048 2197 0.967380 CAAACATGCCCCCAGAGACC 60.967 60.000 0.00 0.00 0.00 3.85
2049 2198 2.484287 AAACATGCCCCCAGAGACCG 62.484 60.000 0.00 0.00 0.00 4.79
2050 2199 3.083349 CATGCCCCCAGAGACCGA 61.083 66.667 0.00 0.00 0.00 4.69
2051 2200 2.765807 ATGCCCCCAGAGACCGAG 60.766 66.667 0.00 0.00 0.00 4.63
2054 2203 3.003173 CCCCCAGAGACCGAGCAA 61.003 66.667 0.00 0.00 0.00 3.91
2055 2204 2.370445 CCCCCAGAGACCGAGCAAT 61.370 63.158 0.00 0.00 0.00 3.56
2056 2205 1.144936 CCCCAGAGACCGAGCAATC 59.855 63.158 0.00 0.00 0.00 2.67
2057 2206 1.227089 CCCAGAGACCGAGCAATCG 60.227 63.158 0.00 0.00 0.00 3.34
2058 2207 1.667154 CCCAGAGACCGAGCAATCGA 61.667 60.000 0.00 0.00 34.64 3.59
2059 2208 0.526524 CCAGAGACCGAGCAATCGAC 60.527 60.000 0.00 0.00 34.64 4.20
2060 2209 0.526524 CAGAGACCGAGCAATCGACC 60.527 60.000 0.00 0.00 34.64 4.79
2061 2210 1.227002 GAGACCGAGCAATCGACCC 60.227 63.158 0.00 0.00 34.64 4.46
2062 2211 1.945354 GAGACCGAGCAATCGACCCA 61.945 60.000 0.00 0.00 34.64 4.51
2063 2212 1.519455 GACCGAGCAATCGACCCAG 60.519 63.158 0.00 0.00 34.64 4.45
2064 2213 2.892425 CCGAGCAATCGACCCAGC 60.892 66.667 0.00 0.00 34.64 4.85
2065 2214 2.892425 CGAGCAATCGACCCAGCC 60.892 66.667 0.00 0.00 34.64 4.85
2066 2215 2.268920 GAGCAATCGACCCAGCCA 59.731 61.111 0.00 0.00 0.00 4.75
2067 2216 2.045926 AGCAATCGACCCAGCCAC 60.046 61.111 0.00 0.00 0.00 5.01
2068 2217 3.134127 GCAATCGACCCAGCCACC 61.134 66.667 0.00 0.00 0.00 4.61
2069 2218 2.438434 CAATCGACCCAGCCACCC 60.438 66.667 0.00 0.00 0.00 4.61
2070 2219 3.728373 AATCGACCCAGCCACCCC 61.728 66.667 0.00 0.00 0.00 4.95
2090 2239 4.867599 GGACCGACCGACCGATGC 62.868 72.222 0.00 0.00 0.00 3.91
2091 2240 4.124351 GACCGACCGACCGATGCA 62.124 66.667 0.00 0.00 0.00 3.96
2092 2241 3.426117 GACCGACCGACCGATGCAT 62.426 63.158 0.00 0.00 0.00 3.96
2093 2242 2.658593 CCGACCGACCGATGCATC 60.659 66.667 17.10 17.10 0.00 3.91
2094 2243 2.658593 CGACCGACCGATGCATCC 60.659 66.667 20.87 6.25 0.00 3.51
2095 2244 2.499205 GACCGACCGATGCATCCA 59.501 61.111 20.87 0.00 0.00 3.41
2096 2245 1.883084 GACCGACCGATGCATCCAC 60.883 63.158 20.87 11.01 0.00 4.02
2097 2246 2.588877 CCGACCGATGCATCCACC 60.589 66.667 20.87 8.69 0.00 4.61
2098 2247 2.961721 CGACCGATGCATCCACCG 60.962 66.667 20.87 16.12 0.00 4.94
2099 2248 2.588877 GACCGATGCATCCACCGG 60.589 66.667 20.87 20.24 46.65 5.28
2101 2250 2.896854 CCGATGCATCCACCGGTG 60.897 66.667 28.26 28.26 37.40 4.94
2102 2251 3.576356 CGATGCATCCACCGGTGC 61.576 66.667 29.75 18.43 41.61 5.01
2103 2252 3.211963 GATGCATCCACCGGTGCC 61.212 66.667 29.75 16.16 40.56 5.01
2170 2319 2.638556 CCGGATGGTCGATCATAGTC 57.361 55.000 12.05 0.00 31.91 2.59
2171 2320 1.135660 CCGGATGGTCGATCATAGTCG 60.136 57.143 12.05 14.99 42.74 4.18
2203 2352 0.942252 AAAAACAGAACGACCCGAGC 59.058 50.000 0.00 0.00 0.00 5.03
2204 2353 1.219522 AAAACAGAACGACCCGAGCG 61.220 55.000 0.00 0.00 0.00 5.03
2205 2354 4.719369 ACAGAACGACCCGAGCGC 62.719 66.667 0.00 0.00 0.00 5.92
2208 2357 4.814294 GAACGACCCGAGCGCCAT 62.814 66.667 2.29 0.00 0.00 4.40
2259 2408 4.459973 CGTGGTCGTCAGCTACTG 57.540 61.111 0.00 0.00 0.00 2.74
2260 2409 1.801913 CGTGGTCGTCAGCTACTGC 60.802 63.158 0.00 0.00 40.05 4.40
2261 2410 1.446272 GTGGTCGTCAGCTACTGCC 60.446 63.158 0.00 0.00 40.80 4.85
2262 2411 1.606601 TGGTCGTCAGCTACTGCCT 60.607 57.895 0.00 0.00 40.80 4.75
2263 2412 1.153745 GGTCGTCAGCTACTGCCTG 60.154 63.158 0.00 0.00 40.80 4.85
2264 2413 1.807573 GTCGTCAGCTACTGCCTGC 60.808 63.158 0.00 0.00 40.80 4.85
2265 2414 2.882777 CGTCAGCTACTGCCTGCG 60.883 66.667 0.00 0.00 40.80 5.18
2266 2415 3.191539 GTCAGCTACTGCCTGCGC 61.192 66.667 0.00 0.00 40.80 6.09
2267 2416 4.801624 TCAGCTACTGCCTGCGCG 62.802 66.667 0.00 0.00 40.80 6.86
2268 2417 4.801624 CAGCTACTGCCTGCGCGA 62.802 66.667 12.10 0.00 40.80 5.87
2269 2418 4.504916 AGCTACTGCCTGCGCGAG 62.505 66.667 12.10 4.18 40.80 5.03
2271 2420 4.135153 CTACTGCCTGCGCGAGGT 62.135 66.667 21.68 10.86 44.97 3.85
2272 2421 4.435436 TACTGCCTGCGCGAGGTG 62.435 66.667 21.68 17.58 44.97 4.00
2305 2454 4.101448 AGGCCGGTGCATGAGGAC 62.101 66.667 1.90 6.08 40.13 3.85
2311 2460 2.439156 GTGCATGAGGACCTGCCC 60.439 66.667 0.00 0.00 36.96 5.36
2312 2461 3.731728 TGCATGAGGACCTGCCCC 61.732 66.667 0.00 0.00 36.96 5.80
2313 2462 4.864334 GCATGAGGACCTGCCCCG 62.864 72.222 0.00 0.00 37.37 5.73
2314 2463 4.181010 CATGAGGACCTGCCCCGG 62.181 72.222 0.00 0.00 37.37 5.73
2323 2472 4.910585 CTGCCCCGGCGGTATGAC 62.911 72.222 26.32 9.47 45.51 3.06
2325 2474 4.476752 GCCCCGGCGGTATGACAA 62.477 66.667 26.32 0.00 0.00 3.18
2326 2475 2.203015 CCCCGGCGGTATGACAAG 60.203 66.667 26.32 6.37 0.00 3.16
2327 2476 2.727392 CCCCGGCGGTATGACAAGA 61.727 63.158 26.32 0.00 0.00 3.02
2328 2477 1.445942 CCCGGCGGTATGACAAGAT 59.554 57.895 26.32 0.00 0.00 2.40
2329 2478 0.880278 CCCGGCGGTATGACAAGATG 60.880 60.000 26.32 0.00 0.00 2.90
2330 2479 0.179084 CCGGCGGTATGACAAGATGT 60.179 55.000 19.97 0.00 0.00 3.06
2331 2480 1.651987 CGGCGGTATGACAAGATGTT 58.348 50.000 0.00 0.00 0.00 2.71
2332 2481 1.593006 CGGCGGTATGACAAGATGTTC 59.407 52.381 0.00 0.00 0.00 3.18
2333 2482 2.738643 CGGCGGTATGACAAGATGTTCT 60.739 50.000 0.00 0.00 0.00 3.01
2334 2483 3.490249 CGGCGGTATGACAAGATGTTCTA 60.490 47.826 0.00 0.00 0.00 2.10
2335 2484 3.802685 GGCGGTATGACAAGATGTTCTAC 59.197 47.826 0.00 0.00 0.00 2.59
2336 2485 4.430007 GCGGTATGACAAGATGTTCTACA 58.570 43.478 0.00 0.00 0.00 2.74
2337 2486 5.050490 GCGGTATGACAAGATGTTCTACAT 58.950 41.667 0.00 0.00 42.43 2.29
2348 2497 3.752412 TGTTCTACATCTACGACCACG 57.248 47.619 0.00 0.00 45.75 4.94
2349 2498 3.337358 TGTTCTACATCTACGACCACGA 58.663 45.455 0.00 0.00 42.66 4.35
2350 2499 3.125829 TGTTCTACATCTACGACCACGAC 59.874 47.826 0.00 0.00 42.66 4.34
2351 2500 2.976589 TCTACATCTACGACCACGACA 58.023 47.619 0.00 0.00 42.66 4.35
2352 2501 2.674852 TCTACATCTACGACCACGACAC 59.325 50.000 0.00 0.00 42.66 3.67
2353 2502 0.524862 ACATCTACGACCACGACACC 59.475 55.000 0.00 0.00 42.66 4.16
2354 2503 0.809385 CATCTACGACCACGACACCT 59.191 55.000 0.00 0.00 42.66 4.00
2355 2504 1.201647 CATCTACGACCACGACACCTT 59.798 52.381 0.00 0.00 42.66 3.50
2356 2505 0.877071 TCTACGACCACGACACCTTC 59.123 55.000 0.00 0.00 42.66 3.46
2357 2506 0.879765 CTACGACCACGACACCTTCT 59.120 55.000 0.00 0.00 42.66 2.85
2358 2507 1.268899 CTACGACCACGACACCTTCTT 59.731 52.381 0.00 0.00 42.66 2.52
2359 2508 0.031721 ACGACCACGACACCTTCTTC 59.968 55.000 0.00 0.00 42.66 2.87
2360 2509 0.666577 CGACCACGACACCTTCTTCC 60.667 60.000 0.00 0.00 42.66 3.46
2361 2510 0.666577 GACCACGACACCTTCTTCCG 60.667 60.000 0.00 0.00 0.00 4.30
2362 2511 1.374252 CCACGACACCTTCTTCCGG 60.374 63.158 0.00 0.00 0.00 5.14
2363 2512 1.663739 CACGACACCTTCTTCCGGA 59.336 57.895 0.00 0.00 0.00 5.14
2364 2513 0.388649 CACGACACCTTCTTCCGGAG 60.389 60.000 3.34 0.00 0.00 4.63
2365 2514 1.446272 CGACACCTTCTTCCGGAGC 60.446 63.158 3.34 0.00 0.00 4.70
2366 2515 1.079057 GACACCTTCTTCCGGAGCC 60.079 63.158 3.34 0.00 0.00 4.70
2367 2516 2.125512 CACCTTCTTCCGGAGCCG 60.126 66.667 3.34 1.06 39.44 5.52
2368 2517 4.083862 ACCTTCTTCCGGAGCCGC 62.084 66.667 3.34 0.00 38.24 6.53
2369 2518 3.775654 CCTTCTTCCGGAGCCGCT 61.776 66.667 3.34 0.00 38.24 5.52
2370 2519 2.202810 CTTCTTCCGGAGCCGCTC 60.203 66.667 12.27 12.27 38.24 5.03
2371 2520 3.724914 CTTCTTCCGGAGCCGCTCC 62.725 68.421 27.17 27.17 46.44 4.70
2378 2527 4.925861 GGAGCCGCTCCTCATGCC 62.926 72.222 29.19 4.21 46.41 4.40
2384 2533 4.819761 GCTCCTCATGCCGCGACA 62.820 66.667 8.23 0.48 0.00 4.35
2385 2534 2.107750 CTCCTCATGCCGCGACAT 59.892 61.111 8.23 4.17 0.00 3.06
2386 2535 1.953138 CTCCTCATGCCGCGACATC 60.953 63.158 8.23 0.00 0.00 3.06
2387 2536 2.202919 CCTCATGCCGCGACATCA 60.203 61.111 8.23 0.00 0.00 3.07
2388 2537 1.596203 CCTCATGCCGCGACATCAT 60.596 57.895 8.23 2.20 0.00 2.45
2389 2538 1.563435 CCTCATGCCGCGACATCATC 61.563 60.000 8.23 0.00 0.00 2.92
2390 2539 1.563435 CTCATGCCGCGACATCATCC 61.563 60.000 8.23 0.00 0.00 3.51
2391 2540 1.888638 CATGCCGCGACATCATCCA 60.889 57.895 8.23 0.00 0.00 3.41
2392 2541 1.889105 ATGCCGCGACATCATCCAC 60.889 57.895 8.23 0.00 0.00 4.02
2393 2542 3.272334 GCCGCGACATCATCCACC 61.272 66.667 8.23 0.00 0.00 4.61
2394 2543 2.186644 CCGCGACATCATCCACCA 59.813 61.111 8.23 0.00 0.00 4.17
2395 2544 1.884464 CCGCGACATCATCCACCAG 60.884 63.158 8.23 0.00 0.00 4.00
2396 2545 1.141665 CGCGACATCATCCACCAGA 59.858 57.895 0.00 0.00 0.00 3.86
2397 2546 0.249615 CGCGACATCATCCACCAGAT 60.250 55.000 0.00 0.00 34.66 2.90
2403 2552 3.728474 CATCCACCAGATGCTCGC 58.272 61.111 0.00 0.00 45.76 5.03
2404 2553 2.107750 ATCCACCAGATGCTCGCG 59.892 61.111 0.00 0.00 32.41 5.87
2405 2554 4.819761 TCCACCAGATGCTCGCGC 62.820 66.667 0.00 0.00 0.00 6.86
2429 2578 2.430244 CGGTCGTCGGTGACTTGG 60.430 66.667 7.68 0.00 38.91 3.61
2430 2579 2.911484 CGGTCGTCGGTGACTTGGA 61.911 63.158 7.68 0.00 38.91 3.53
2431 2580 1.372623 GGTCGTCGGTGACTTGGAC 60.373 63.158 7.68 0.00 38.91 4.02
2432 2581 1.372623 GTCGTCGGTGACTTGGACC 60.373 63.158 0.00 0.00 35.95 4.46
2433 2582 1.529948 TCGTCGGTGACTTGGACCT 60.530 57.895 0.00 0.00 0.00 3.85
2434 2583 1.080705 CGTCGGTGACTTGGACCTC 60.081 63.158 0.00 0.00 0.00 3.85
2435 2584 1.080705 GTCGGTGACTTGGACCTCG 60.081 63.158 0.00 0.00 0.00 4.63
2436 2585 2.432628 CGGTGACTTGGACCTCGC 60.433 66.667 0.00 0.00 0.00 5.03
2437 2586 2.047179 GGTGACTTGGACCTCGCC 60.047 66.667 0.00 0.00 0.00 5.54
2438 2587 2.432628 GTGACTTGGACCTCGCCG 60.433 66.667 0.00 0.00 0.00 6.46
2439 2588 4.373116 TGACTTGGACCTCGCCGC 62.373 66.667 0.00 0.00 0.00 6.53
2456 2605 2.742372 CCGGCAACTGGGACGAAG 60.742 66.667 0.00 0.00 0.00 3.79
2457 2606 2.342279 CGGCAACTGGGACGAAGA 59.658 61.111 0.00 0.00 0.00 2.87
2458 2607 2.027625 CGGCAACTGGGACGAAGAC 61.028 63.158 0.00 0.00 0.00 3.01
2459 2608 1.671379 GGCAACTGGGACGAAGACC 60.671 63.158 0.00 0.00 42.83 3.85
2460 2609 1.070786 GCAACTGGGACGAAGACCA 59.929 57.895 0.00 0.00 46.08 4.02
2461 2610 1.228657 GCAACTGGGACGAAGACCAC 61.229 60.000 0.00 0.00 46.08 4.16
2462 2611 0.393077 CAACTGGGACGAAGACCACT 59.607 55.000 0.00 0.00 46.08 4.00
2463 2612 1.129058 AACTGGGACGAAGACCACTT 58.871 50.000 0.00 0.00 46.08 3.16
2464 2613 0.680061 ACTGGGACGAAGACCACTTC 59.320 55.000 0.00 0.00 46.08 3.01
2465 2614 0.037232 CTGGGACGAAGACCACTTCC 60.037 60.000 0.00 0.00 46.08 3.46
2466 2615 0.471211 TGGGACGAAGACCACTTCCT 60.471 55.000 0.00 0.00 46.08 3.36
2467 2616 0.037232 GGGACGAAGACCACTTCCTG 60.037 60.000 0.00 0.00 46.08 3.86
2468 2617 0.670854 GGACGAAGACCACTTCCTGC 60.671 60.000 0.00 0.00 46.77 4.85
2469 2618 0.670854 GACGAAGACCACTTCCTGCC 60.671 60.000 0.00 0.00 46.77 4.85
2470 2619 1.376037 CGAAGACCACTTCCTGCCC 60.376 63.158 0.00 0.00 46.77 5.36
2471 2620 1.002011 GAAGACCACTTCCTGCCCC 60.002 63.158 0.00 0.00 44.60 5.80
2472 2621 1.774217 AAGACCACTTCCTGCCCCA 60.774 57.895 0.00 0.00 0.00 4.96
2473 2622 2.034221 GACCACTTCCTGCCCCAC 59.966 66.667 0.00 0.00 0.00 4.61
2474 2623 3.901797 GACCACTTCCTGCCCCACG 62.902 68.421 0.00 0.00 0.00 4.94
2475 2624 3.636231 CCACTTCCTGCCCCACGA 61.636 66.667 0.00 0.00 0.00 4.35
2476 2625 2.671070 CACTTCCTGCCCCACGAT 59.329 61.111 0.00 0.00 0.00 3.73
2477 2626 1.746615 CACTTCCTGCCCCACGATG 60.747 63.158 0.00 0.00 0.00 3.84
2478 2627 2.224159 ACTTCCTGCCCCACGATGT 61.224 57.895 0.00 0.00 0.00 3.06
2479 2628 1.746615 CTTCCTGCCCCACGATGTG 60.747 63.158 0.00 0.00 0.00 3.21
2488 2637 3.189921 CACGATGTGGCCACCATG 58.810 61.111 32.62 22.72 35.28 3.66
2489 2638 1.377072 CACGATGTGGCCACCATGA 60.377 57.895 32.62 15.09 35.28 3.07
2490 2639 0.749091 CACGATGTGGCCACCATGAT 60.749 55.000 32.62 19.46 35.28 2.45
2491 2640 0.464373 ACGATGTGGCCACCATGATC 60.464 55.000 32.62 25.05 35.28 2.92
2492 2641 1.168407 CGATGTGGCCACCATGATCC 61.168 60.000 32.62 12.55 35.28 3.36
2493 2642 0.106569 GATGTGGCCACCATGATCCA 60.107 55.000 32.62 12.31 35.28 3.41
2494 2643 0.559205 ATGTGGCCACCATGATCCAT 59.441 50.000 32.62 14.18 35.28 3.41
2495 2644 0.396001 TGTGGCCACCATGATCCATG 60.396 55.000 32.62 0.00 41.10 3.66
2496 2645 1.456145 TGGCCACCATGATCCATGC 60.456 57.895 0.00 0.00 40.20 4.06
2497 2646 2.558286 GGCCACCATGATCCATGCG 61.558 63.158 0.00 0.00 40.20 4.73
2498 2647 3.036577 CCACCATGATCCATGCGC 58.963 61.111 0.00 0.00 40.20 6.09
2499 2648 2.635338 CACCATGATCCATGCGCG 59.365 61.111 0.00 0.00 40.20 6.86
2500 2649 2.182181 CACCATGATCCATGCGCGT 61.182 57.895 8.43 0.00 40.20 6.01
2501 2650 0.879839 CACCATGATCCATGCGCGTA 60.880 55.000 8.43 2.40 40.20 4.42
2502 2651 0.601046 ACCATGATCCATGCGCGTAG 60.601 55.000 8.43 0.00 40.20 3.51
2503 2652 1.904852 CCATGATCCATGCGCGTAGC 61.905 60.000 8.43 0.00 44.17 3.58
2515 2664 2.046892 CGTAGCAGCTGGTTGCCT 60.047 61.111 25.47 9.94 45.18 4.75
2516 2665 1.672356 CGTAGCAGCTGGTTGCCTT 60.672 57.895 25.47 0.00 45.18 4.35
2517 2666 1.237285 CGTAGCAGCTGGTTGCCTTT 61.237 55.000 25.47 0.00 45.18 3.11
2518 2667 0.523519 GTAGCAGCTGGTTGCCTTTC 59.476 55.000 25.47 0.00 45.18 2.62
2519 2668 0.110295 TAGCAGCTGGTTGCCTTTCA 59.890 50.000 25.47 0.00 45.18 2.69
2520 2669 0.756442 AGCAGCTGGTTGCCTTTCAA 60.756 50.000 13.85 0.00 45.18 2.69
2521 2670 0.319405 GCAGCTGGTTGCCTTTCAAT 59.681 50.000 17.12 0.00 44.23 2.57
2522 2671 1.545582 GCAGCTGGTTGCCTTTCAATA 59.454 47.619 17.12 0.00 44.23 1.90
2523 2672 2.029110 GCAGCTGGTTGCCTTTCAATAA 60.029 45.455 17.12 0.00 44.23 1.40
2524 2673 3.554752 GCAGCTGGTTGCCTTTCAATAAA 60.555 43.478 17.12 0.00 44.23 1.40
2525 2674 3.989817 CAGCTGGTTGCCTTTCAATAAAC 59.010 43.478 5.57 0.00 44.23 2.01
2526 2675 2.986479 GCTGGTTGCCTTTCAATAAACG 59.014 45.455 0.00 0.00 36.99 3.60
2527 2676 3.574614 CTGGTTGCCTTTCAATAAACGG 58.425 45.455 0.00 0.00 36.99 4.44
2528 2677 2.959707 TGGTTGCCTTTCAATAAACGGT 59.040 40.909 0.00 0.00 36.99 4.83
2529 2678 3.385111 TGGTTGCCTTTCAATAAACGGTT 59.615 39.130 0.00 0.00 36.99 4.44
2530 2679 3.738791 GGTTGCCTTTCAATAAACGGTTG 59.261 43.478 0.00 0.00 36.99 3.77
2531 2680 4.364860 GTTGCCTTTCAATAAACGGTTGT 58.635 39.130 0.00 0.00 36.99 3.32
2532 2681 3.971150 TGCCTTTCAATAAACGGTTGTG 58.029 40.909 0.00 0.00 0.00 3.33
2533 2682 3.381908 TGCCTTTCAATAAACGGTTGTGT 59.618 39.130 0.00 0.00 0.00 3.72
2534 2683 3.733727 GCCTTTCAATAAACGGTTGTGTG 59.266 43.478 0.00 0.00 0.00 3.82
2535 2684 3.733727 CCTTTCAATAAACGGTTGTGTGC 59.266 43.478 0.00 0.00 0.00 4.57
2536 2685 4.355437 CTTTCAATAAACGGTTGTGTGCA 58.645 39.130 0.00 0.00 0.00 4.57
2537 2686 4.576216 TTCAATAAACGGTTGTGTGCAT 57.424 36.364 0.00 0.00 0.00 3.96
2538 2687 4.153958 TCAATAAACGGTTGTGTGCATC 57.846 40.909 0.00 0.00 0.00 3.91
2539 2688 3.565902 TCAATAAACGGTTGTGTGCATCA 59.434 39.130 0.00 0.00 0.00 3.07
2540 2689 4.036852 TCAATAAACGGTTGTGTGCATCAA 59.963 37.500 0.00 0.00 0.00 2.57
2541 2690 2.949451 AAACGGTTGTGTGCATCAAA 57.051 40.000 8.46 0.00 0.00 2.69
2542 2691 2.949451 AACGGTTGTGTGCATCAAAA 57.051 40.000 8.46 0.00 0.00 2.44
2543 2692 2.490328 ACGGTTGTGTGCATCAAAAG 57.510 45.000 8.46 8.23 0.00 2.27
2544 2693 2.020720 ACGGTTGTGTGCATCAAAAGA 58.979 42.857 8.46 0.00 0.00 2.52
2545 2694 2.622942 ACGGTTGTGTGCATCAAAAGAT 59.377 40.909 8.46 0.00 0.00 2.40
2546 2695 2.981805 CGGTTGTGTGCATCAAAAGATG 59.018 45.455 8.46 1.24 35.76 2.90
2555 2704 3.422417 CATCAAAAGATGCAGAGGCTG 57.578 47.619 0.00 0.00 41.91 4.85
2556 2705 1.830279 TCAAAAGATGCAGAGGCTGG 58.170 50.000 0.00 0.00 41.91 4.85
2557 2706 0.815734 CAAAAGATGCAGAGGCTGGG 59.184 55.000 0.00 0.00 41.91 4.45
2558 2707 0.324091 AAAAGATGCAGAGGCTGGGG 60.324 55.000 0.00 0.00 41.91 4.96
2559 2708 1.210204 AAAGATGCAGAGGCTGGGGA 61.210 55.000 0.00 0.00 41.91 4.81
2560 2709 0.992431 AAGATGCAGAGGCTGGGGAT 60.992 55.000 0.00 0.00 41.91 3.85
2561 2710 0.104777 AGATGCAGAGGCTGGGGATA 60.105 55.000 0.00 0.00 41.91 2.59
2562 2711 0.036022 GATGCAGAGGCTGGGGATAC 59.964 60.000 0.00 0.00 41.91 2.24
2563 2712 1.762522 ATGCAGAGGCTGGGGATACG 61.763 60.000 0.00 0.00 41.91 3.06
2573 2722 3.398694 GGGGATACGCCTCCTTTTC 57.601 57.895 4.07 0.00 45.38 2.29
2574 2723 0.544697 GGGGATACGCCTCCTTTTCA 59.455 55.000 4.07 0.00 45.38 2.69
2575 2724 1.064979 GGGGATACGCCTCCTTTTCAA 60.065 52.381 4.07 0.00 45.38 2.69
2576 2725 2.289565 GGGATACGCCTCCTTTTCAAG 58.710 52.381 4.07 0.00 35.50 3.02
2577 2726 2.093128 GGGATACGCCTCCTTTTCAAGA 60.093 50.000 4.07 0.00 35.50 3.02
2578 2727 3.606687 GGATACGCCTCCTTTTCAAGAA 58.393 45.455 0.00 0.00 32.18 2.52
2579 2728 4.007659 GGATACGCCTCCTTTTCAAGAAA 58.992 43.478 0.00 0.00 32.18 2.52
2580 2729 4.457949 GGATACGCCTCCTTTTCAAGAAAA 59.542 41.667 7.65 7.65 37.90 2.29
2581 2730 5.048294 GGATACGCCTCCTTTTCAAGAAAAA 60.048 40.000 9.05 0.00 39.49 1.94
2582 2731 9.645296 GGGATACGCCTCCTTTTCAAGAAAAAG 62.645 44.444 9.05 3.92 43.64 2.27
2608 2757 2.327200 AAATAGCTAGTTGCCCGACC 57.673 50.000 5.48 0.00 44.23 4.79
2609 2758 1.497161 AATAGCTAGTTGCCCGACCT 58.503 50.000 0.00 0.00 44.23 3.85
2610 2759 0.753262 ATAGCTAGTTGCCCGACCTG 59.247 55.000 0.00 0.00 44.23 4.00
2611 2760 1.956629 TAGCTAGTTGCCCGACCTGC 61.957 60.000 0.00 0.00 44.23 4.85
2612 2761 2.982130 CTAGTTGCCCGACCTGCT 59.018 61.111 0.00 0.00 0.00 4.24
2613 2762 1.153549 CTAGTTGCCCGACCTGCTC 60.154 63.158 0.00 0.00 0.00 4.26
2614 2763 2.579684 CTAGTTGCCCGACCTGCTCC 62.580 65.000 0.00 0.00 0.00 4.70
2615 2764 4.329545 GTTGCCCGACCTGCTCCA 62.330 66.667 0.00 0.00 0.00 3.86
2616 2765 3.329889 TTGCCCGACCTGCTCCAT 61.330 61.111 0.00 0.00 0.00 3.41
2617 2766 1.992834 TTGCCCGACCTGCTCCATA 60.993 57.895 0.00 0.00 0.00 2.74
2618 2767 1.971505 TTGCCCGACCTGCTCCATAG 61.972 60.000 0.00 0.00 0.00 2.23
2629 2778 2.113860 GCTCCATAGCCAAGTTGACA 57.886 50.000 3.87 0.00 43.40 3.58
2630 2779 2.648059 GCTCCATAGCCAAGTTGACAT 58.352 47.619 3.87 0.00 43.40 3.06
2631 2780 2.357009 GCTCCATAGCCAAGTTGACATG 59.643 50.000 3.87 4.60 43.40 3.21
2632 2781 3.614092 CTCCATAGCCAAGTTGACATGT 58.386 45.455 3.87 0.00 0.00 3.21
2633 2782 3.346315 TCCATAGCCAAGTTGACATGTG 58.654 45.455 1.15 0.00 0.00 3.21
2634 2783 2.159338 CCATAGCCAAGTTGACATGTGC 60.159 50.000 1.15 0.00 0.00 4.57
2635 2784 1.155889 TAGCCAAGTTGACATGTGCG 58.844 50.000 1.15 0.00 0.00 5.34
2636 2785 0.819259 AGCCAAGTTGACATGTGCGT 60.819 50.000 1.15 0.00 0.00 5.24
2637 2786 0.661187 GCCAAGTTGACATGTGCGTG 60.661 55.000 1.15 1.91 0.00 5.34
2638 2787 0.040157 CCAAGTTGACATGTGCGTGG 60.040 55.000 1.15 7.61 0.00 4.94
2639 2788 0.943673 CAAGTTGACATGTGCGTGGA 59.056 50.000 1.15 0.00 0.00 4.02
2640 2789 0.944386 AAGTTGACATGTGCGTGGAC 59.056 50.000 1.15 0.00 0.00 4.02
2641 2790 1.204062 GTTGACATGTGCGTGGACG 59.796 57.895 1.15 0.00 43.27 4.79
2642 2791 1.227409 TTGACATGTGCGTGGACGT 60.227 52.632 1.15 0.00 42.22 4.34
2643 2792 1.218875 TTGACATGTGCGTGGACGTC 61.219 55.000 1.15 7.13 42.22 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.218578 CTCTGATCCGCTGCCGCT 62.219 66.667 0.00 0.00 0.00 5.52
15 16 0.685785 TTCCTCTGCTCTGATCCGCT 60.686 55.000 0.00 0.00 0.00 5.52
23 24 1.899142 GTGGTCTTCTTCCTCTGCTCT 59.101 52.381 0.00 0.00 0.00 4.09
46 47 0.744414 CCGTCGCCAGTGATGGATTT 60.744 55.000 13.19 0.00 46.14 2.17
48 49 2.501128 CCGTCGCCAGTGATGGAT 59.499 61.111 13.19 0.00 46.14 3.41
106 108 1.474879 GAGAGAGAAGTGCTTACCGCT 59.525 52.381 0.00 0.00 40.11 5.52
148 169 2.065993 CGAATCTATCGCCGTGGATT 57.934 50.000 0.00 0.00 45.89 3.01
179 200 0.036875 CCTCTATTCCCCATTCCCGC 59.963 60.000 0.00 0.00 0.00 6.13
287 381 0.197661 TTCTGTACCCCCTTTCCCCT 59.802 55.000 0.00 0.00 0.00 4.79
397 502 2.439701 AACGAGGAGATCCGCCGA 60.440 61.111 18.74 0.00 42.08 5.54
530 636 4.203076 GACGGGTATCACGCCGCT 62.203 66.667 0.00 0.00 36.04 5.52
573 679 6.869206 ACAAGACCTACTTTGCTCCTAATA 57.131 37.500 0.00 0.00 36.61 0.98
861 969 2.851045 GGCAACCCCTTCCCTTGA 59.149 61.111 0.00 0.00 0.00 3.02
1228 1350 1.760086 CTCCTCCATGCCCTCGTCT 60.760 63.158 0.00 0.00 0.00 4.18
1285 1409 2.111384 TGAGTTGCTCCATCCTCCTAC 58.889 52.381 0.00 0.00 0.00 3.18
1286 1410 2.111384 GTGAGTTGCTCCATCCTCCTA 58.889 52.381 0.00 0.00 0.00 2.94
1297 1421 1.133976 ACCTTGCAGAAGTGAGTTGCT 60.134 47.619 0.00 0.00 38.60 3.91
1298 1422 1.265365 GACCTTGCAGAAGTGAGTTGC 59.735 52.381 0.00 0.00 38.30 4.17
1334 1459 2.582272 GCATGGGGATGCACTCAAA 58.418 52.632 2.14 0.00 46.25 2.69
1416 1541 1.821061 CGTCACCTTCCAGGAGCAGT 61.821 60.000 0.00 0.00 37.67 4.40
1438 1563 0.613260 ACCTGCCGTTCATCAGCTTA 59.387 50.000 0.00 0.00 0.00 3.09
1488 1613 4.557496 CGATCTTGATCTGATGAACGGCTA 60.557 45.833 8.70 0.00 0.00 3.93
1578 1703 2.872245 CACTTGTTGACGACCTCAATGT 59.128 45.455 0.00 0.00 41.10 2.71
1653 1783 4.715713 ACCATAGCAGACTCGATAGTACA 58.284 43.478 0.00 0.00 35.56 2.90
1734 1876 6.102897 AGCACAACAGAGTATAAACAGAGT 57.897 37.500 0.00 0.00 0.00 3.24
1819 1961 1.678101 GGTTGTATGCAAGGCCTGATC 59.322 52.381 5.69 0.00 34.94 2.92
1860 2009 2.094675 GGTTGCCTGCATGTTAGTCAT 58.905 47.619 0.00 0.00 37.22 3.06
1861 2010 1.202867 TGGTTGCCTGCATGTTAGTCA 60.203 47.619 0.00 0.00 0.00 3.41
2006 2155 4.178540 GTTGTCGTTTGCTATAGTGCCTA 58.821 43.478 0.84 0.00 0.00 3.93
2014 2163 4.545610 CATGTTTGGTTGTCGTTTGCTAT 58.454 39.130 0.00 0.00 0.00 2.97
2024 2173 1.074926 TGGGGGCATGTTTGGTTGT 60.075 52.632 0.00 0.00 0.00 3.32
2041 2190 0.526524 GGTCGATTGCTCGGTCTCTG 60.527 60.000 0.00 0.00 45.10 3.35
2042 2191 1.668101 GGGTCGATTGCTCGGTCTCT 61.668 60.000 0.00 0.00 45.10 3.10
2043 2192 1.227002 GGGTCGATTGCTCGGTCTC 60.227 63.158 0.00 0.00 45.10 3.36
2044 2193 1.949847 CTGGGTCGATTGCTCGGTCT 61.950 60.000 0.00 0.00 45.10 3.85
2045 2194 1.519455 CTGGGTCGATTGCTCGGTC 60.519 63.158 0.00 0.00 45.10 4.79
2046 2195 2.579201 CTGGGTCGATTGCTCGGT 59.421 61.111 0.00 0.00 45.10 4.69
2047 2196 2.892425 GCTGGGTCGATTGCTCGG 60.892 66.667 0.00 0.00 45.10 4.63
2048 2197 2.892425 GGCTGGGTCGATTGCTCG 60.892 66.667 0.00 0.00 46.41 5.03
2049 2198 2.109126 GTGGCTGGGTCGATTGCTC 61.109 63.158 0.00 0.00 0.00 4.26
2050 2199 2.045926 GTGGCTGGGTCGATTGCT 60.046 61.111 0.00 0.00 0.00 3.91
2051 2200 3.134127 GGTGGCTGGGTCGATTGC 61.134 66.667 0.00 0.00 0.00 3.56
2052 2201 2.438434 GGGTGGCTGGGTCGATTG 60.438 66.667 0.00 0.00 0.00 2.67
2053 2202 3.728373 GGGGTGGCTGGGTCGATT 61.728 66.667 0.00 0.00 0.00 3.34
2073 2222 4.867599 GCATCGGTCGGTCGGTCC 62.868 72.222 0.00 0.00 0.00 4.46
2074 2223 3.426117 ATGCATCGGTCGGTCGGTC 62.426 63.158 0.00 0.00 0.00 4.79
2075 2224 3.426117 GATGCATCGGTCGGTCGGT 62.426 63.158 11.68 0.00 0.00 4.69
2076 2225 2.658593 GATGCATCGGTCGGTCGG 60.659 66.667 11.68 0.00 0.00 4.79
2077 2226 2.658593 GGATGCATCGGTCGGTCG 60.659 66.667 20.15 0.00 0.00 4.79
2078 2227 1.883084 GTGGATGCATCGGTCGGTC 60.883 63.158 20.15 5.33 0.00 4.79
2079 2228 2.186903 GTGGATGCATCGGTCGGT 59.813 61.111 20.15 0.00 0.00 4.69
2080 2229 2.588877 GGTGGATGCATCGGTCGG 60.589 66.667 20.15 0.00 0.00 4.79
2081 2230 2.961721 CGGTGGATGCATCGGTCG 60.962 66.667 20.15 17.64 0.00 4.79
2082 2231 2.588877 CCGGTGGATGCATCGGTC 60.589 66.667 28.90 12.21 43.39 4.79
2085 2234 3.576356 GCACCGGTGGATGCATCG 61.576 66.667 34.58 13.56 41.65 3.84
2086 2235 3.211963 GGCACCGGTGGATGCATC 61.212 66.667 34.58 18.81 43.93 3.91
2142 2291 4.101448 ACCATCCGGTGCTCAGCC 62.101 66.667 0.00 0.00 46.79 4.85
2151 2300 1.135660 CGACTATGATCGACCATCCGG 60.136 57.143 0.00 0.00 45.13 5.14
2152 2301 1.804748 TCGACTATGATCGACCATCCG 59.195 52.381 0.00 0.00 45.84 4.18
2153 2302 2.414824 GCTCGACTATGATCGACCATCC 60.415 54.545 0.00 0.00 45.84 3.51
2154 2303 2.486203 AGCTCGACTATGATCGACCATC 59.514 50.000 0.00 0.00 45.84 3.51
2155 2304 2.509569 AGCTCGACTATGATCGACCAT 58.490 47.619 0.00 0.00 45.84 3.55
2156 2305 1.968704 AGCTCGACTATGATCGACCA 58.031 50.000 0.00 0.00 45.84 4.02
2157 2306 4.267357 GATAGCTCGACTATGATCGACC 57.733 50.000 10.86 0.00 45.84 4.79
2184 2333 0.942252 GCTCGGGTCGTTCTGTTTTT 59.058 50.000 0.00 0.00 0.00 1.94
2185 2334 1.219522 CGCTCGGGTCGTTCTGTTTT 61.220 55.000 0.00 0.00 0.00 2.43
2186 2335 1.663702 CGCTCGGGTCGTTCTGTTT 60.664 57.895 0.00 0.00 0.00 2.83
2187 2336 2.049433 CGCTCGGGTCGTTCTGTT 60.049 61.111 0.00 0.00 0.00 3.16
2188 2337 4.719369 GCGCTCGGGTCGTTCTGT 62.719 66.667 0.00 0.00 0.00 3.41
2191 2340 4.814294 ATGGCGCTCGGGTCGTTC 62.814 66.667 7.64 0.00 0.00 3.95
2241 2390 2.473664 GCAGTAGCTGACGACCACGT 62.474 60.000 0.00 0.00 46.38 4.49
2242 2391 1.801913 GCAGTAGCTGACGACCACG 60.802 63.158 0.00 0.00 40.79 4.94
2243 2392 1.446272 GGCAGTAGCTGACGACCAC 60.446 63.158 0.00 0.00 41.70 4.16
2244 2393 1.606601 AGGCAGTAGCTGACGACCA 60.607 57.895 0.00 0.00 45.59 4.02
2245 2394 1.153745 CAGGCAGTAGCTGACGACC 60.154 63.158 0.00 0.00 45.59 4.79
2246 2395 1.807573 GCAGGCAGTAGCTGACGAC 60.808 63.158 0.00 0.00 45.59 4.34
2247 2396 2.573869 GCAGGCAGTAGCTGACGA 59.426 61.111 0.00 0.00 45.59 4.20
2248 2397 2.882777 CGCAGGCAGTAGCTGACG 60.883 66.667 0.00 0.00 45.59 4.35
2249 2398 3.191539 GCGCAGGCAGTAGCTGAC 61.192 66.667 0.30 0.00 40.37 3.51
2250 2399 4.801624 CGCGCAGGCAGTAGCTGA 62.802 66.667 8.75 0.00 41.70 4.26
2251 2400 4.801624 TCGCGCAGGCAGTAGCTG 62.802 66.667 8.75 0.00 41.70 4.24
2252 2401 4.504916 CTCGCGCAGGCAGTAGCT 62.505 66.667 8.75 0.00 41.70 3.32
2287 2436 4.100084 TCCTCATGCACCGGCCTG 62.100 66.667 0.00 0.00 40.13 4.85
2288 2437 4.101448 GTCCTCATGCACCGGCCT 62.101 66.667 0.00 0.00 40.13 5.19
2290 2439 4.101448 AGGTCCTCATGCACCGGC 62.101 66.667 0.00 0.00 37.79 6.13
2291 2440 2.124983 CAGGTCCTCATGCACCGG 60.125 66.667 0.00 0.00 37.79 5.28
2297 2446 4.181010 CCGGGGCAGGTCCTCATG 62.181 72.222 0.00 0.00 33.78 3.07
2306 2455 4.910585 GTCATACCGCCGGGGCAG 62.911 72.222 14.15 2.75 42.06 4.85
2308 2457 4.476752 TTGTCATACCGCCGGGGC 62.477 66.667 14.15 0.00 40.62 5.80
2309 2458 2.040009 ATCTTGTCATACCGCCGGGG 62.040 60.000 12.43 12.43 43.62 5.73
2310 2459 0.880278 CATCTTGTCATACCGCCGGG 60.880 60.000 8.57 0.00 40.11 5.73
2311 2460 0.179084 ACATCTTGTCATACCGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
2312 2461 1.593006 GAACATCTTGTCATACCGCCG 59.407 52.381 0.00 0.00 0.00 6.46
2313 2462 2.906354 AGAACATCTTGTCATACCGCC 58.094 47.619 0.00 0.00 0.00 6.13
2314 2463 4.430007 TGTAGAACATCTTGTCATACCGC 58.570 43.478 0.00 0.00 0.00 5.68
2326 2475 4.034858 TCGTGGTCGTAGATGTAGAACATC 59.965 45.833 11.26 11.26 44.64 3.06
2327 2476 3.943381 TCGTGGTCGTAGATGTAGAACAT 59.057 43.478 0.00 0.00 40.67 2.71
2328 2477 3.125829 GTCGTGGTCGTAGATGTAGAACA 59.874 47.826 0.00 0.00 40.67 3.18
2329 2478 3.125829 TGTCGTGGTCGTAGATGTAGAAC 59.874 47.826 0.00 0.00 40.67 3.01
2330 2479 3.125829 GTGTCGTGGTCGTAGATGTAGAA 59.874 47.826 0.00 0.00 40.67 2.10
2331 2480 2.674852 GTGTCGTGGTCGTAGATGTAGA 59.325 50.000 0.00 0.00 40.67 2.59
2332 2481 2.223203 GGTGTCGTGGTCGTAGATGTAG 60.223 54.545 0.00 0.00 40.67 2.74
2333 2482 1.739466 GGTGTCGTGGTCGTAGATGTA 59.261 52.381 0.00 0.00 40.67 2.29
2334 2483 0.524862 GGTGTCGTGGTCGTAGATGT 59.475 55.000 0.00 0.00 40.67 3.06
2335 2484 0.809385 AGGTGTCGTGGTCGTAGATG 59.191 55.000 0.00 0.00 40.67 2.90
2336 2485 1.471684 GAAGGTGTCGTGGTCGTAGAT 59.528 52.381 0.00 0.00 40.67 1.98
2337 2486 0.877071 GAAGGTGTCGTGGTCGTAGA 59.123 55.000 0.00 0.00 38.33 2.59
2338 2487 0.879765 AGAAGGTGTCGTGGTCGTAG 59.120 55.000 0.00 0.00 38.33 3.51
2339 2488 1.267806 GAAGAAGGTGTCGTGGTCGTA 59.732 52.381 0.00 0.00 38.33 3.43
2340 2489 0.031721 GAAGAAGGTGTCGTGGTCGT 59.968 55.000 0.00 0.00 38.33 4.34
2341 2490 0.666577 GGAAGAAGGTGTCGTGGTCG 60.667 60.000 0.00 0.00 38.55 4.79
2342 2491 0.666577 CGGAAGAAGGTGTCGTGGTC 60.667 60.000 0.00 0.00 0.00 4.02
2343 2492 1.366366 CGGAAGAAGGTGTCGTGGT 59.634 57.895 0.00 0.00 0.00 4.16
2344 2493 1.374252 CCGGAAGAAGGTGTCGTGG 60.374 63.158 0.00 0.00 0.00 4.94
2345 2494 0.388649 CTCCGGAAGAAGGTGTCGTG 60.389 60.000 5.23 0.00 0.00 4.35
2346 2495 1.965219 CTCCGGAAGAAGGTGTCGT 59.035 57.895 5.23 0.00 0.00 4.34
2347 2496 1.446272 GCTCCGGAAGAAGGTGTCG 60.446 63.158 5.23 0.00 0.00 4.35
2348 2497 1.079057 GGCTCCGGAAGAAGGTGTC 60.079 63.158 5.23 0.00 0.00 3.67
2349 2498 2.943978 CGGCTCCGGAAGAAGGTGT 61.944 63.158 5.23 0.00 35.56 4.16
2350 2499 2.125512 CGGCTCCGGAAGAAGGTG 60.126 66.667 5.23 0.00 35.56 4.00
2351 2500 4.083862 GCGGCTCCGGAAGAAGGT 62.084 66.667 5.23 0.00 40.19 3.50
2352 2501 3.724914 GAGCGGCTCCGGAAGAAGG 62.725 68.421 19.20 0.00 40.19 3.46
2353 2502 2.202810 GAGCGGCTCCGGAAGAAG 60.203 66.667 19.20 0.00 40.19 2.85
2354 2503 3.771160 GGAGCGGCTCCGGAAGAA 61.771 66.667 31.44 0.00 41.08 2.52
2367 2516 4.819761 TGTCGCGGCATGAGGAGC 62.820 66.667 10.57 0.00 0.00 4.70
2368 2517 1.953138 GATGTCGCGGCATGAGGAG 60.953 63.158 33.53 0.00 0.00 3.69
2369 2518 2.031674 ATGATGTCGCGGCATGAGGA 62.032 55.000 33.53 12.31 0.00 3.71
2370 2519 1.563435 GATGATGTCGCGGCATGAGG 61.563 60.000 33.53 0.00 0.00 3.86
2371 2520 1.563435 GGATGATGTCGCGGCATGAG 61.563 60.000 33.53 0.00 0.00 2.90
2372 2521 1.595109 GGATGATGTCGCGGCATGA 60.595 57.895 33.53 25.25 0.00 3.07
2373 2522 1.888638 TGGATGATGTCGCGGCATG 60.889 57.895 33.53 0.00 0.00 4.06
2374 2523 1.889105 GTGGATGATGTCGCGGCAT 60.889 57.895 28.71 28.71 0.00 4.40
2375 2524 2.511373 GTGGATGATGTCGCGGCA 60.511 61.111 19.03 19.03 0.00 5.69
2376 2525 3.272334 GGTGGATGATGTCGCGGC 61.272 66.667 2.29 2.29 0.00 6.53
2377 2526 1.884464 CTGGTGGATGATGTCGCGG 60.884 63.158 6.13 0.00 0.00 6.46
2378 2527 0.249615 ATCTGGTGGATGATGTCGCG 60.250 55.000 0.00 0.00 32.69 5.87
2379 2528 3.694364 ATCTGGTGGATGATGTCGC 57.306 52.632 0.00 0.00 32.69 5.19
2387 2536 2.107750 CGCGAGCATCTGGTGGAT 59.892 61.111 0.00 0.00 34.51 3.41
2412 2561 2.430244 CCAAGTCACCGACGACCG 60.430 66.667 0.00 0.00 37.67 4.79
2413 2562 1.372623 GTCCAAGTCACCGACGACC 60.373 63.158 0.00 0.00 37.67 4.79
2414 2563 1.372623 GGTCCAAGTCACCGACGAC 60.373 63.158 0.00 0.00 37.67 4.34
2415 2564 1.521450 GAGGTCCAAGTCACCGACGA 61.521 60.000 0.00 0.00 39.13 4.20
2416 2565 1.080705 GAGGTCCAAGTCACCGACG 60.081 63.158 0.00 0.00 39.13 5.12
2417 2566 1.080705 CGAGGTCCAAGTCACCGAC 60.081 63.158 0.00 0.00 39.13 4.79
2418 2567 2.927580 GCGAGGTCCAAGTCACCGA 61.928 63.158 0.00 0.00 39.13 4.69
2419 2568 2.432628 GCGAGGTCCAAGTCACCG 60.433 66.667 0.00 0.00 39.13 4.94
2420 2569 2.047179 GGCGAGGTCCAAGTCACC 60.047 66.667 0.00 0.00 0.00 4.02
2421 2570 2.432628 CGGCGAGGTCCAAGTCAC 60.433 66.667 0.00 0.00 0.00 3.67
2422 2571 4.373116 GCGGCGAGGTCCAAGTCA 62.373 66.667 12.98 0.00 0.00 3.41
2439 2588 2.742372 CTTCGTCCCAGTTGCCGG 60.742 66.667 0.00 0.00 0.00 6.13
2440 2589 2.027625 GTCTTCGTCCCAGTTGCCG 61.028 63.158 0.00 0.00 0.00 5.69
2441 2590 1.671379 GGTCTTCGTCCCAGTTGCC 60.671 63.158 0.00 0.00 0.00 4.52
2442 2591 1.070786 TGGTCTTCGTCCCAGTTGC 59.929 57.895 0.00 0.00 0.00 4.17
2443 2592 0.393077 AGTGGTCTTCGTCCCAGTTG 59.607 55.000 0.00 0.00 29.98 3.16
2444 2593 1.070289 GAAGTGGTCTTCGTCCCAGTT 59.930 52.381 0.00 0.00 44.99 3.16
2445 2594 0.680061 GAAGTGGTCTTCGTCCCAGT 59.320 55.000 0.00 0.00 40.24 4.00
2446 2595 3.516578 GAAGTGGTCTTCGTCCCAG 57.483 57.895 0.00 0.00 40.24 4.45
2453 2602 1.002011 GGGGCAGGAAGTGGTCTTC 60.002 63.158 0.01 0.01 46.53 2.87
2454 2603 1.774217 TGGGGCAGGAAGTGGTCTT 60.774 57.895 0.00 0.00 36.51 3.01
2455 2604 2.121963 TGGGGCAGGAAGTGGTCT 60.122 61.111 0.00 0.00 0.00 3.85
2456 2605 2.034221 GTGGGGCAGGAAGTGGTC 59.966 66.667 0.00 0.00 0.00 4.02
2457 2606 3.953775 CGTGGGGCAGGAAGTGGT 61.954 66.667 0.00 0.00 0.00 4.16
2458 2607 2.971598 ATCGTGGGGCAGGAAGTGG 61.972 63.158 0.00 0.00 32.06 4.00
2459 2608 1.746615 CATCGTGGGGCAGGAAGTG 60.747 63.158 0.00 0.00 32.06 3.16
2460 2609 2.224159 ACATCGTGGGGCAGGAAGT 61.224 57.895 0.00 0.00 32.06 3.01
2461 2610 1.746615 CACATCGTGGGGCAGGAAG 60.747 63.158 0.00 0.00 32.06 3.46
2462 2611 2.350895 CACATCGTGGGGCAGGAA 59.649 61.111 0.00 0.00 32.06 3.36
2471 2620 0.749091 ATCATGGTGGCCACATCGTG 60.749 55.000 35.78 27.94 44.42 4.35
2472 2621 0.464373 GATCATGGTGGCCACATCGT 60.464 55.000 35.78 18.79 35.80 3.73
2473 2622 1.168407 GGATCATGGTGGCCACATCG 61.168 60.000 35.78 22.51 35.80 3.84
2474 2623 0.106569 TGGATCATGGTGGCCACATC 60.107 55.000 35.78 27.31 35.80 3.06
2475 2624 0.559205 ATGGATCATGGTGGCCACAT 59.441 50.000 35.78 23.54 35.80 3.21
2476 2625 0.396001 CATGGATCATGGTGGCCACA 60.396 55.000 35.78 22.39 38.11 4.17
2477 2626 1.741327 GCATGGATCATGGTGGCCAC 61.741 60.000 28.57 28.57 41.64 5.01
2478 2627 1.456145 GCATGGATCATGGTGGCCA 60.456 57.895 0.00 0.00 41.64 5.36
2479 2628 2.558286 CGCATGGATCATGGTGGCC 61.558 63.158 0.00 0.00 41.64 5.36
2480 2629 3.036577 CGCATGGATCATGGTGGC 58.963 61.111 9.54 0.00 41.64 5.01
2481 2630 2.900167 CGCGCATGGATCATGGTGG 61.900 63.158 8.75 0.00 41.64 4.61
2482 2631 0.879839 TACGCGCATGGATCATGGTG 60.880 55.000 5.73 8.49 41.64 4.17
2483 2632 0.601046 CTACGCGCATGGATCATGGT 60.601 55.000 5.73 0.00 41.64 3.55
2484 2633 1.904852 GCTACGCGCATGGATCATGG 61.905 60.000 5.73 2.16 41.64 3.66
2485 2634 1.223417 TGCTACGCGCATGGATCATG 61.223 55.000 5.73 3.72 45.47 3.07
2486 2635 1.069596 TGCTACGCGCATGGATCAT 59.930 52.632 5.73 0.00 45.47 2.45
2487 2636 2.498726 TGCTACGCGCATGGATCA 59.501 55.556 5.73 0.00 45.47 2.92
2495 2644 4.152625 CAACCAGCTGCTACGCGC 62.153 66.667 8.66 0.00 39.77 6.86
2496 2645 4.152625 GCAACCAGCTGCTACGCG 62.153 66.667 8.66 3.53 39.34 6.01
2497 2646 3.804193 GGCAACCAGCTGCTACGC 61.804 66.667 8.66 7.63 44.79 4.42
2498 2647 1.237285 AAAGGCAACCAGCTGCTACG 61.237 55.000 8.66 0.00 44.79 3.51
2499 2648 0.523519 GAAAGGCAACCAGCTGCTAC 59.476 55.000 8.66 0.00 44.79 3.58
2500 2649 0.110295 TGAAAGGCAACCAGCTGCTA 59.890 50.000 8.66 0.00 44.79 3.49
2501 2650 0.756442 TTGAAAGGCAACCAGCTGCT 60.756 50.000 8.66 0.00 44.79 4.24
2502 2651 0.319405 ATTGAAAGGCAACCAGCTGC 59.681 50.000 8.66 0.00 44.79 5.25
2503 2652 3.940209 TTATTGAAAGGCAACCAGCTG 57.060 42.857 6.78 6.78 44.79 4.24
2504 2653 3.305335 CGTTTATTGAAAGGCAACCAGCT 60.305 43.478 0.00 0.00 44.79 4.24
2505 2654 2.986479 CGTTTATTGAAAGGCAACCAGC 59.014 45.455 0.00 0.00 39.78 4.85
2506 2655 3.005367 ACCGTTTATTGAAAGGCAACCAG 59.995 43.478 0.00 0.00 40.15 4.00
2507 2656 2.959707 ACCGTTTATTGAAAGGCAACCA 59.040 40.909 0.00 0.00 40.15 3.67
2508 2657 3.653539 ACCGTTTATTGAAAGGCAACC 57.346 42.857 0.00 0.00 40.15 3.77
2509 2658 4.208253 CACAACCGTTTATTGAAAGGCAAC 59.792 41.667 0.00 0.00 40.15 4.17
2510 2659 4.142138 ACACAACCGTTTATTGAAAGGCAA 60.142 37.500 0.00 0.00 40.15 4.52
2511 2660 3.381908 ACACAACCGTTTATTGAAAGGCA 59.618 39.130 0.00 0.00 40.15 4.75
2512 2661 3.733727 CACACAACCGTTTATTGAAAGGC 59.266 43.478 0.00 0.00 40.15 4.35
2513 2662 3.733727 GCACACAACCGTTTATTGAAAGG 59.266 43.478 0.00 0.00 41.97 3.11
2514 2663 4.355437 TGCACACAACCGTTTATTGAAAG 58.645 39.130 0.00 0.00 0.00 2.62
2515 2664 4.371855 TGCACACAACCGTTTATTGAAA 57.628 36.364 0.00 0.00 0.00 2.69
2516 2665 4.036852 TGATGCACACAACCGTTTATTGAA 59.963 37.500 0.00 0.00 0.00 2.69
2517 2666 3.565902 TGATGCACACAACCGTTTATTGA 59.434 39.130 0.00 0.00 0.00 2.57
2518 2667 3.894920 TGATGCACACAACCGTTTATTG 58.105 40.909 0.00 0.00 0.00 1.90
2519 2668 4.576216 TTGATGCACACAACCGTTTATT 57.424 36.364 0.00 0.00 0.00 1.40
2520 2669 4.576216 TTTGATGCACACAACCGTTTAT 57.424 36.364 7.52 0.00 0.00 1.40
2521 2670 4.096532 TCTTTTGATGCACACAACCGTTTA 59.903 37.500 7.52 0.00 0.00 2.01
2522 2671 2.949451 TTTGATGCACACAACCGTTT 57.051 40.000 7.52 0.00 0.00 3.60
2523 2672 2.425312 TCTTTTGATGCACACAACCGTT 59.575 40.909 7.52 0.00 0.00 4.44
2524 2673 2.020720 TCTTTTGATGCACACAACCGT 58.979 42.857 7.52 0.00 0.00 4.83
2525 2674 2.772568 TCTTTTGATGCACACAACCG 57.227 45.000 7.52 3.32 0.00 4.44
2536 2685 2.376109 CCAGCCTCTGCATCTTTTGAT 58.624 47.619 0.00 0.00 41.13 2.57
2537 2686 1.615116 CCCAGCCTCTGCATCTTTTGA 60.615 52.381 0.00 0.00 41.13 2.69
2538 2687 0.815734 CCCAGCCTCTGCATCTTTTG 59.184 55.000 0.00 0.00 41.13 2.44
2539 2688 0.324091 CCCCAGCCTCTGCATCTTTT 60.324 55.000 0.00 0.00 41.13 2.27
2540 2689 1.210204 TCCCCAGCCTCTGCATCTTT 61.210 55.000 0.00 0.00 41.13 2.52
2541 2690 0.992431 ATCCCCAGCCTCTGCATCTT 60.992 55.000 0.00 0.00 41.13 2.40
2542 2691 0.104777 TATCCCCAGCCTCTGCATCT 60.105 55.000 0.00 0.00 41.13 2.90
2543 2692 0.036022 GTATCCCCAGCCTCTGCATC 59.964 60.000 0.00 0.00 41.13 3.91
2544 2693 1.762522 CGTATCCCCAGCCTCTGCAT 61.763 60.000 0.00 0.00 41.13 3.96
2545 2694 2.434843 CGTATCCCCAGCCTCTGCA 61.435 63.158 0.00 0.00 41.13 4.41
2546 2695 2.423446 CGTATCCCCAGCCTCTGC 59.577 66.667 0.00 0.00 37.95 4.26
2547 2696 2.423446 GCGTATCCCCAGCCTCTG 59.577 66.667 0.00 0.00 0.00 3.35
2548 2697 2.844839 GGCGTATCCCCAGCCTCT 60.845 66.667 0.00 0.00 46.83 3.69
2552 2701 1.984288 AAAGGAGGCGTATCCCCAGC 61.984 60.000 4.63 0.00 40.53 4.85
2553 2702 0.546598 AAAAGGAGGCGTATCCCCAG 59.453 55.000 4.63 0.00 40.53 4.45
2554 2703 0.544697 GAAAAGGAGGCGTATCCCCA 59.455 55.000 4.63 0.00 40.53 4.96
2555 2704 0.544697 TGAAAAGGAGGCGTATCCCC 59.455 55.000 4.63 0.00 40.53 4.81
2556 2705 2.093128 TCTTGAAAAGGAGGCGTATCCC 60.093 50.000 4.63 0.00 46.24 3.85
2557 2706 3.261981 TCTTGAAAAGGAGGCGTATCC 57.738 47.619 0.18 0.18 46.24 2.59
2558 2707 5.622770 TTTTCTTGAAAAGGAGGCGTATC 57.377 39.130 4.61 0.00 46.24 2.24
2559 2708 6.013842 CTTTTTCTTGAAAAGGAGGCGTAT 57.986 37.500 11.03 0.00 46.78 3.06
2560 2709 5.432885 CTTTTTCTTGAAAAGGAGGCGTA 57.567 39.130 11.03 0.00 46.78 4.42
2561 2710 4.307443 CTTTTTCTTGAAAAGGAGGCGT 57.693 40.909 11.03 0.00 46.78 5.68
2587 2736 3.014623 GGTCGGGCAACTAGCTATTTTT 58.985 45.455 0.00 0.00 44.79 1.94
2588 2737 2.238898 AGGTCGGGCAACTAGCTATTTT 59.761 45.455 0.00 0.00 44.79 1.82
2589 2738 1.838077 AGGTCGGGCAACTAGCTATTT 59.162 47.619 0.00 0.00 44.79 1.40
2590 2739 1.139058 CAGGTCGGGCAACTAGCTATT 59.861 52.381 0.00 0.00 44.79 1.73
2591 2740 0.753262 CAGGTCGGGCAACTAGCTAT 59.247 55.000 0.00 0.00 44.79 2.97
2592 2741 1.956629 GCAGGTCGGGCAACTAGCTA 61.957 60.000 0.00 0.00 44.79 3.32
2593 2742 2.982130 CAGGTCGGGCAACTAGCT 59.018 61.111 0.00 0.00 44.79 3.32
2594 2743 2.820037 GCAGGTCGGGCAACTAGC 60.820 66.667 0.00 0.00 44.65 3.42
2595 2744 1.153549 GAGCAGGTCGGGCAACTAG 60.154 63.158 0.00 0.00 0.00 2.57
2596 2745 2.656069 GGAGCAGGTCGGGCAACTA 61.656 63.158 0.00 0.00 0.00 2.24
2597 2746 4.021925 GGAGCAGGTCGGGCAACT 62.022 66.667 0.00 0.00 0.00 3.16
2598 2747 2.252072 TATGGAGCAGGTCGGGCAAC 62.252 60.000 0.00 0.00 0.00 4.17
2599 2748 1.971505 CTATGGAGCAGGTCGGGCAA 61.972 60.000 0.00 0.00 0.00 4.52
2600 2749 2.364973 TATGGAGCAGGTCGGGCA 60.365 61.111 0.00 0.00 0.00 5.36
2601 2750 2.423446 CTATGGAGCAGGTCGGGC 59.577 66.667 0.00 0.00 0.00 6.13
2611 2760 3.376234 CACATGTCAACTTGGCTATGGAG 59.624 47.826 0.00 1.43 0.00 3.86
2612 2761 3.346315 CACATGTCAACTTGGCTATGGA 58.654 45.455 0.00 0.00 0.00 3.41
2613 2762 2.159338 GCACATGTCAACTTGGCTATGG 60.159 50.000 0.00 0.00 0.00 2.74
2614 2763 2.476686 CGCACATGTCAACTTGGCTATG 60.477 50.000 0.00 0.60 0.00 2.23
2615 2764 1.739466 CGCACATGTCAACTTGGCTAT 59.261 47.619 0.00 0.00 0.00 2.97
2616 2765 1.155889 CGCACATGTCAACTTGGCTA 58.844 50.000 0.00 0.00 0.00 3.93
2617 2766 0.819259 ACGCACATGTCAACTTGGCT 60.819 50.000 0.00 0.00 0.00 4.75
2618 2767 0.661187 CACGCACATGTCAACTTGGC 60.661 55.000 0.00 0.00 0.00 4.52
2619 2768 0.040157 CCACGCACATGTCAACTTGG 60.040 55.000 0.00 0.00 0.00 3.61
2620 2769 0.943673 TCCACGCACATGTCAACTTG 59.056 50.000 0.00 0.00 0.00 3.16
2621 2770 0.944386 GTCCACGCACATGTCAACTT 59.056 50.000 0.00 0.00 0.00 2.66
2622 2771 1.221466 CGTCCACGCACATGTCAACT 61.221 55.000 0.00 0.00 0.00 3.16
2623 2772 1.204062 CGTCCACGCACATGTCAAC 59.796 57.895 0.00 0.00 0.00 3.18
2624 2773 1.218875 GACGTCCACGCACATGTCAA 61.219 55.000 3.51 0.00 44.43 3.18
2625 2774 1.663388 GACGTCCACGCACATGTCA 60.663 57.895 3.51 0.00 44.43 3.58
2626 2775 3.156334 GACGTCCACGCACATGTC 58.844 61.111 3.51 0.00 44.43 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.