Multiple sequence alignment - TraesCS3B01G501500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G501500 chr3B 100.000 3536 0 0 1 3536 745475384 745471849 0.000000e+00 6530.0
1 TraesCS3B01G501500 chr3B 89.788 1224 99 14 341 1556 745450630 745449425 0.000000e+00 1544.0
2 TraesCS3B01G501500 chr3B 99.755 815 2 0 2719 3533 647245105 647245919 0.000000e+00 1495.0
3 TraesCS3B01G501500 chr3B 99.755 815 2 0 2719 3533 737063154 737063968 0.000000e+00 1495.0
4 TraesCS3B01G501500 chr3B 99.389 818 5 0 2719 3536 592657858 592657041 0.000000e+00 1483.0
5 TraesCS3B01G501500 chr3B 85.307 1368 164 28 552 1908 745203368 745202027 0.000000e+00 1378.0
6 TraesCS3B01G501500 chr3B 85.619 1356 146 33 549 1870 747493065 747494405 0.000000e+00 1378.0
7 TraesCS3B01G501500 chr3B 85.524 1354 151 30 549 1870 744419835 744418495 0.000000e+00 1373.0
8 TraesCS3B01G501500 chr3B 86.861 1134 115 13 425 1556 744590514 744591615 0.000000e+00 1238.0
9 TraesCS3B01G501500 chr3B 86.861 1134 115 13 425 1556 746856444 746855343 0.000000e+00 1238.0
10 TraesCS3B01G501500 chr3B 85.289 571 65 12 2064 2618 745448837 745448270 3.960000e-159 571.0
11 TraesCS3B01G501500 chr3B 83.449 574 71 13 2059 2618 745243390 745242827 2.430000e-141 512.0
12 TraesCS3B01G501500 chr3B 85.996 457 61 1 2086 2542 745441607 745442060 1.480000e-133 486.0
13 TraesCS3B01G501500 chr3B 86.031 451 60 3 2097 2545 746286536 746286985 6.870000e-132 481.0
14 TraesCS3B01G501500 chr3B 95.109 184 8 1 1645 1828 745449266 745449084 4.470000e-74 289.0
15 TraesCS3B01G501500 chr3B 79.487 429 49 20 1469 1895 746847708 746848099 5.820000e-68 268.0
16 TraesCS3B01G501500 chr3B 97.368 76 1 1 1603 1677 745449418 745449343 1.030000e-25 128.0
17 TraesCS3B01G501500 chr3D 89.466 1348 108 22 341 1677 560786050 560784726 0.000000e+00 1672.0
18 TraesCS3B01G501500 chr3D 85.438 1346 159 28 549 1870 560235087 560233755 0.000000e+00 1365.0
19 TraesCS3B01G501500 chr3D 84.889 1350 164 25 556 1895 560826911 560828230 0.000000e+00 1327.0
20 TraesCS3B01G501500 chr3D 85.427 1242 157 17 622 1851 560640212 560641441 0.000000e+00 1269.0
21 TraesCS3B01G501500 chr3D 83.836 1293 178 19 556 1827 560551607 560552889 0.000000e+00 1201.0
22 TraesCS3B01G501500 chr3D 84.615 1001 127 18 549 1548 560477824 560478798 0.000000e+00 970.0
23 TraesCS3B01G501500 chr3D 90.358 643 57 4 2079 2718 560784323 560783683 0.000000e+00 839.0
24 TraesCS3B01G501500 chr3D 86.637 449 57 3 2099 2545 560553129 560553576 8.820000e-136 494.0
25 TraesCS3B01G501500 chr3D 82.705 584 73 17 2051 2618 560703089 560702518 8.820000e-136 494.0
26 TraesCS3B01G501500 chr3D 95.219 251 11 1 1645 1895 560784643 560784394 2.560000e-106 396.0
27 TraesCS3B01G501500 chr3D 82.445 319 40 10 1596 1901 560197913 560197598 7.530000e-67 265.0
28 TraesCS3B01G501500 chr3D 87.059 85 3 4 1974 2052 61038199 61038281 4.860000e-14 89.8
29 TraesCS3B01G501500 chr2B 99.877 816 1 0 2718 3533 67161831 67162646 0.000000e+00 1502.0
30 TraesCS3B01G501500 chr2B 99.267 818 6 0 2719 3536 593646324 593645507 0.000000e+00 1478.0
31 TraesCS3B01G501500 chr2A 99.877 813 1 0 2721 3533 332022205 332023017 0.000000e+00 1496.0
32 TraesCS3B01G501500 chr2A 90.514 253 19 3 2467 2716 287751944 287752194 2.630000e-86 329.0
33 TraesCS3B01G501500 chr2A 89.700 233 20 2 2486 2716 295545499 295545269 9.600000e-76 294.0
34 TraesCS3B01G501500 chr2A 97.727 88 2 0 1 88 453796743 453796656 6.110000e-33 152.0
35 TraesCS3B01G501500 chr2A 95.714 70 3 0 1975 2044 32387809 32387878 2.880000e-21 113.0
36 TraesCS3B01G501500 chr2A 89.041 73 5 2 1975 2044 723121849 723121921 1.750000e-13 87.9
37 TraesCS3B01G501500 chr7A 99.755 815 2 0 2719 3533 730471552 730472366 0.000000e+00 1495.0
38 TraesCS3B01G501500 chr7A 89.189 74 3 1 1975 2048 540953433 540953501 1.750000e-13 87.9
39 TraesCS3B01G501500 chr1A 99.509 815 4 0 2719 3533 203811763 203812577 0.000000e+00 1483.0
40 TraesCS3B01G501500 chr1A 92.857 252 14 2 2467 2716 552504869 552505118 2.590000e-96 363.0
41 TraesCS3B01G501500 chrUn 98.565 836 9 2 2700 3533 49778916 49779750 0.000000e+00 1474.0
42 TraesCS3B01G501500 chrUn 83.449 574 71 13 2059 2618 301718658 301719221 2.430000e-141 512.0
43 TraesCS3B01G501500 chr3A 89.741 1004 92 3 430 1428 696601873 696600876 0.000000e+00 1273.0
44 TraesCS3B01G501500 chr3A 82.381 1260 154 39 648 1898 696477899 696476699 0.000000e+00 1035.0
45 TraesCS3B01G501500 chr3A 94.169 686 28 3 2043 2718 696599039 696598356 0.000000e+00 1035.0
46 TraesCS3B01G501500 chr3A 81.481 1053 149 23 558 1590 696344804 696343778 0.000000e+00 822.0
47 TraesCS3B01G501500 chr3A 93.763 497 31 0 1472 1968 696599554 696599058 0.000000e+00 747.0
48 TraesCS3B01G501500 chr3A 93.050 259 14 3 2467 2723 678044946 678044690 3.330000e-100 375.0
49 TraesCS3B01G501500 chr3A 91.498 247 14 2 172 417 696610992 696610752 2.030000e-87 333.0
50 TraesCS3B01G501500 chr6B 92.913 254 14 2 2467 2718 148311819 148311568 2.010000e-97 366.0
51 TraesCS3B01G501500 chr6B 97.753 89 2 0 1 89 6665073 6664985 1.700000e-33 154.0
52 TraesCS3B01G501500 chr6B 96.629 89 3 0 1 89 262047694 262047606 7.910000e-32 148.0
53 TraesCS3B01G501500 chr6B 96.667 90 2 1 1 89 561143114 561143025 7.910000e-32 148.0
54 TraesCS3B01G501500 chr6A 92.490 253 14 3 2467 2716 595961812 595962062 1.210000e-94 357.0
55 TraesCS3B01G501500 chr1B 92.460 252 13 3 2467 2716 39565449 39565696 4.340000e-94 355.0
56 TraesCS3B01G501500 chr1B 97.727 88 2 0 1 88 526343375 526343288 6.110000e-33 152.0
57 TraesCS3B01G501500 chr5A 95.876 97 2 2 1 97 387095179 387095273 4.730000e-34 156.0
58 TraesCS3B01G501500 chr5B 97.753 89 2 0 1 89 149313573 149313661 1.700000e-33 154.0
59 TraesCS3B01G501500 chr5B 92.381 105 7 1 1 105 379154885 379154988 7.910000e-32 148.0
60 TraesCS3B01G501500 chr5B 92.105 76 4 2 1971 2044 8544420 8544345 4.830000e-19 106.0
61 TraesCS3B01G501500 chr5B 91.139 79 3 2 1970 2044 622572315 622572393 1.740000e-18 104.0
62 TraesCS3B01G501500 chr7B 95.745 94 3 1 3 96 677748525 677748433 2.200000e-32 150.0
63 TraesCS3B01G501500 chr6D 94.521 73 4 0 1973 2045 445933036 445932964 2.880000e-21 113.0
64 TraesCS3B01G501500 chr6D 89.610 77 6 2 1970 2045 445932960 445933035 2.910000e-16 97.1
65 TraesCS3B01G501500 chr2D 87.342 79 7 3 1971 2047 63541800 63541877 1.750000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G501500 chr3B 745471849 745475384 3535 True 6530.000000 6530 100.000000 1 3536 1 chr3B.!!$R5 3535
1 TraesCS3B01G501500 chr3B 647245105 647245919 814 False 1495.000000 1495 99.755000 2719 3533 1 chr3B.!!$F1 814
2 TraesCS3B01G501500 chr3B 737063154 737063968 814 False 1495.000000 1495 99.755000 2719 3533 1 chr3B.!!$F2 814
3 TraesCS3B01G501500 chr3B 592657041 592657858 817 True 1483.000000 1483 99.389000 2719 3536 1 chr3B.!!$R1 817
4 TraesCS3B01G501500 chr3B 745202027 745203368 1341 True 1378.000000 1378 85.307000 552 1908 1 chr3B.!!$R3 1356
5 TraesCS3B01G501500 chr3B 747493065 747494405 1340 False 1378.000000 1378 85.619000 549 1870 1 chr3B.!!$F7 1321
6 TraesCS3B01G501500 chr3B 744418495 744419835 1340 True 1373.000000 1373 85.524000 549 1870 1 chr3B.!!$R2 1321
7 TraesCS3B01G501500 chr3B 744590514 744591615 1101 False 1238.000000 1238 86.861000 425 1556 1 chr3B.!!$F3 1131
8 TraesCS3B01G501500 chr3B 746855343 746856444 1101 True 1238.000000 1238 86.861000 425 1556 1 chr3B.!!$R6 1131
9 TraesCS3B01G501500 chr3B 745448270 745450630 2360 True 633.000000 1544 91.888500 341 2618 4 chr3B.!!$R7 2277
10 TraesCS3B01G501500 chr3B 745242827 745243390 563 True 512.000000 512 83.449000 2059 2618 1 chr3B.!!$R4 559
11 TraesCS3B01G501500 chr3D 560233755 560235087 1332 True 1365.000000 1365 85.438000 549 1870 1 chr3D.!!$R2 1321
12 TraesCS3B01G501500 chr3D 560826911 560828230 1319 False 1327.000000 1327 84.889000 556 1895 1 chr3D.!!$F4 1339
13 TraesCS3B01G501500 chr3D 560640212 560641441 1229 False 1269.000000 1269 85.427000 622 1851 1 chr3D.!!$F3 1229
14 TraesCS3B01G501500 chr3D 560477824 560478798 974 False 970.000000 970 84.615000 549 1548 1 chr3D.!!$F2 999
15 TraesCS3B01G501500 chr3D 560783683 560786050 2367 True 969.000000 1672 91.681000 341 2718 3 chr3D.!!$R4 2377
16 TraesCS3B01G501500 chr3D 560551607 560553576 1969 False 847.500000 1201 85.236500 556 2545 2 chr3D.!!$F5 1989
17 TraesCS3B01G501500 chr3D 560702518 560703089 571 True 494.000000 494 82.705000 2051 2618 1 chr3D.!!$R3 567
18 TraesCS3B01G501500 chr2B 67161831 67162646 815 False 1502.000000 1502 99.877000 2718 3533 1 chr2B.!!$F1 815
19 TraesCS3B01G501500 chr2B 593645507 593646324 817 True 1478.000000 1478 99.267000 2719 3536 1 chr2B.!!$R1 817
20 TraesCS3B01G501500 chr2A 332022205 332023017 812 False 1496.000000 1496 99.877000 2721 3533 1 chr2A.!!$F3 812
21 TraesCS3B01G501500 chr7A 730471552 730472366 814 False 1495.000000 1495 99.755000 2719 3533 1 chr7A.!!$F2 814
22 TraesCS3B01G501500 chr1A 203811763 203812577 814 False 1483.000000 1483 99.509000 2719 3533 1 chr1A.!!$F1 814
23 TraesCS3B01G501500 chrUn 49778916 49779750 834 False 1474.000000 1474 98.565000 2700 3533 1 chrUn.!!$F1 833
24 TraesCS3B01G501500 chrUn 301718658 301719221 563 False 512.000000 512 83.449000 2059 2618 1 chrUn.!!$F2 559
25 TraesCS3B01G501500 chr3A 696476699 696477899 1200 True 1035.000000 1035 82.381000 648 1898 1 chr3A.!!$R3 1250
26 TraesCS3B01G501500 chr3A 696598356 696601873 3517 True 1018.333333 1273 92.557667 430 2718 3 chr3A.!!$R5 2288
27 TraesCS3B01G501500 chr3A 696343778 696344804 1026 True 822.000000 822 81.481000 558 1590 1 chr3A.!!$R2 1032

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.035820 TTGCGCCTCGGTTTCCTTAT 60.036 50.0 4.18 0.00 0.00 1.73 F
267 268 0.179078 TAACACGGACGTTGTGCCTT 60.179 50.0 18.37 10.78 41.03 4.35 F
396 397 0.320683 GTTTCCCACATTTGGCTGGC 60.321 55.0 0.00 0.00 42.35 4.85 F
409 410 0.475906 GGCTGGCCCAATATCTCACT 59.524 55.0 0.00 0.00 0.00 3.41 F
1564 2869 0.954452 GCAGGAATTGGGGATTAGCG 59.046 55.0 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 3222 0.545646 GGAAGCATCTGAGGAAGCCT 59.454 55.000 0.00 0.0 36.92 4.58 R
1796 3253 1.064060 GTTTACATGGACATGGAGCGC 59.936 52.381 15.94 0.0 42.91 5.92 R
2344 3989 0.172803 GGCTTCAGCTTGGCATTCAG 59.827 55.000 0.00 0.0 41.70 3.02 R
2480 4125 1.850345 ACTGGAGGTCAAAAGGGTCAA 59.150 47.619 0.00 0.0 0.00 3.18 R
2659 4322 0.321653 GATCTGTTGCGTCCACCCTT 60.322 55.000 0.00 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.683572 GCCCGGGCCTGGATTTTT 60.684 61.111 36.64 0.00 34.56 1.94
40 41 1.439644 TTTTTGTGTCGGGCTTGGC 59.560 52.632 0.00 0.00 0.00 4.52
41 42 1.040339 TTTTTGTGTCGGGCTTGGCT 61.040 50.000 0.00 0.00 0.00 4.75
42 43 0.179015 TTTTGTGTCGGGCTTGGCTA 60.179 50.000 0.00 0.00 0.00 3.93
43 44 0.605319 TTTGTGTCGGGCTTGGCTAG 60.605 55.000 0.00 0.00 0.00 3.42
44 45 2.125106 GTGTCGGGCTTGGCTAGG 60.125 66.667 0.00 0.00 0.00 3.02
84 85 3.966543 CCCGAGGTTTGGCCAGGT 61.967 66.667 5.11 0.00 40.61 4.00
85 86 2.598787 CCCGAGGTTTGGCCAGGTA 61.599 63.158 5.11 0.00 40.61 3.08
86 87 1.607612 CCGAGGTTTGGCCAGGTAT 59.392 57.895 5.11 0.00 40.61 2.73
87 88 0.834612 CCGAGGTTTGGCCAGGTATA 59.165 55.000 5.11 0.00 40.61 1.47
88 89 1.474498 CCGAGGTTTGGCCAGGTATAC 60.474 57.143 5.11 0.40 40.61 1.47
89 90 1.208535 CGAGGTTTGGCCAGGTATACA 59.791 52.381 5.11 0.00 40.61 2.29
90 91 2.158813 CGAGGTTTGGCCAGGTATACAT 60.159 50.000 5.11 0.00 40.61 2.29
91 92 3.477530 GAGGTTTGGCCAGGTATACATC 58.522 50.000 5.11 4.36 40.61 3.06
92 93 3.123273 AGGTTTGGCCAGGTATACATCT 58.877 45.455 5.11 0.00 40.61 2.90
93 94 4.303794 AGGTTTGGCCAGGTATACATCTA 58.696 43.478 5.11 0.00 40.61 1.98
94 95 4.348168 AGGTTTGGCCAGGTATACATCTAG 59.652 45.833 5.11 0.00 40.61 2.43
95 96 4.505039 GGTTTGGCCAGGTATACATCTAGG 60.505 50.000 5.11 0.00 37.17 3.02
96 97 2.902608 TGGCCAGGTATACATCTAGGG 58.097 52.381 0.00 0.00 0.00 3.53
97 98 2.453212 TGGCCAGGTATACATCTAGGGA 59.547 50.000 0.00 0.00 0.00 4.20
98 99 3.079072 TGGCCAGGTATACATCTAGGGAT 59.921 47.826 0.00 0.00 0.00 3.85
99 100 3.707102 GGCCAGGTATACATCTAGGGATC 59.293 52.174 5.01 0.00 0.00 3.36
100 101 3.381908 GCCAGGTATACATCTAGGGATCG 59.618 52.174 5.01 0.00 0.00 3.69
101 102 4.601084 CCAGGTATACATCTAGGGATCGT 58.399 47.826 5.01 0.00 0.00 3.73
102 103 4.641094 CCAGGTATACATCTAGGGATCGTC 59.359 50.000 5.01 0.00 0.00 4.20
103 104 5.502079 CAGGTATACATCTAGGGATCGTCT 58.498 45.833 5.01 0.00 0.00 4.18
104 105 5.946972 CAGGTATACATCTAGGGATCGTCTT 59.053 44.000 5.01 0.00 0.00 3.01
105 106 5.946972 AGGTATACATCTAGGGATCGTCTTG 59.053 44.000 5.01 0.00 0.00 3.02
106 107 4.792521 ATACATCTAGGGATCGTCTTGC 57.207 45.455 0.00 0.00 0.00 4.01
107 108 1.338337 ACATCTAGGGATCGTCTTGCG 59.662 52.381 0.00 0.00 43.01 4.85
108 109 0.962489 ATCTAGGGATCGTCTTGCGG 59.038 55.000 0.00 0.00 41.72 5.69
109 110 0.106868 TCTAGGGATCGTCTTGCGGA 60.107 55.000 0.00 0.00 41.72 5.54
110 111 0.744874 CTAGGGATCGTCTTGCGGAA 59.255 55.000 0.00 0.00 41.72 4.30
111 112 0.458669 TAGGGATCGTCTTGCGGAAC 59.541 55.000 0.00 0.00 41.72 3.62
127 128 3.891056 GGAACGAACCGTGAATTTTCT 57.109 42.857 0.00 0.00 39.99 2.52
128 129 4.219143 GGAACGAACCGTGAATTTTCTT 57.781 40.909 0.00 0.00 39.99 2.52
129 130 4.216731 GGAACGAACCGTGAATTTTCTTC 58.783 43.478 0.00 0.00 39.99 2.87
130 131 4.024302 GGAACGAACCGTGAATTTTCTTCT 60.024 41.667 0.00 0.00 39.99 2.85
131 132 5.494632 AACGAACCGTGAATTTTCTTCTT 57.505 34.783 0.00 0.00 39.99 2.52
132 133 5.494632 ACGAACCGTGAATTTTCTTCTTT 57.505 34.783 0.00 0.00 39.18 2.52
133 134 5.886992 ACGAACCGTGAATTTTCTTCTTTT 58.113 33.333 0.00 0.00 39.18 2.27
134 135 6.327154 ACGAACCGTGAATTTTCTTCTTTTT 58.673 32.000 0.00 0.00 39.18 1.94
135 136 6.252655 ACGAACCGTGAATTTTCTTCTTTTTG 59.747 34.615 0.00 0.00 39.18 2.44
136 137 5.966636 ACCGTGAATTTTCTTCTTTTTGC 57.033 34.783 0.00 0.00 0.00 3.68
137 138 4.808895 ACCGTGAATTTTCTTCTTTTTGCC 59.191 37.500 0.00 0.00 0.00 4.52
138 139 5.049828 CCGTGAATTTTCTTCTTTTTGCCT 58.950 37.500 0.00 0.00 0.00 4.75
139 140 5.523552 CCGTGAATTTTCTTCTTTTTGCCTT 59.476 36.000 0.00 0.00 0.00 4.35
140 141 6.413269 CGTGAATTTTCTTCTTTTTGCCTTG 58.587 36.000 0.00 0.00 0.00 3.61
141 142 6.255453 CGTGAATTTTCTTCTTTTTGCCTTGA 59.745 34.615 0.00 0.00 0.00 3.02
142 143 7.201513 CGTGAATTTTCTTCTTTTTGCCTTGAA 60.202 33.333 0.00 0.00 0.00 2.69
143 144 8.450180 GTGAATTTTCTTCTTTTTGCCTTGAAA 58.550 29.630 0.00 0.00 0.00 2.69
144 145 8.667463 TGAATTTTCTTCTTTTTGCCTTGAAAG 58.333 29.630 0.00 0.00 34.87 2.62
145 146 8.565896 AATTTTCTTCTTTTTGCCTTGAAAGT 57.434 26.923 0.00 0.00 35.07 2.66
146 147 7.977789 TTTTCTTCTTTTTGCCTTGAAAGTT 57.022 28.000 0.00 0.00 35.07 2.66
147 148 6.966435 TTCTTCTTTTTGCCTTGAAAGTTG 57.034 33.333 0.00 0.00 35.07 3.16
148 149 4.869861 TCTTCTTTTTGCCTTGAAAGTTGC 59.130 37.500 0.00 0.00 35.07 4.17
149 150 3.186119 TCTTTTTGCCTTGAAAGTTGCG 58.814 40.909 0.00 0.00 35.07 4.85
150 151 1.285578 TTTTGCCTTGAAAGTTGCGC 58.714 45.000 0.00 0.00 0.00 6.09
151 152 0.529555 TTTGCCTTGAAAGTTGCGCC 60.530 50.000 4.18 0.00 0.00 6.53
152 153 1.391157 TTGCCTTGAAAGTTGCGCCT 61.391 50.000 4.18 0.00 0.00 5.52
153 154 1.081175 GCCTTGAAAGTTGCGCCTC 60.081 57.895 4.18 0.00 0.00 4.70
154 155 1.207593 CCTTGAAAGTTGCGCCTCG 59.792 57.895 4.18 0.00 0.00 4.63
155 156 1.207593 CTTGAAAGTTGCGCCTCGG 59.792 57.895 4.18 0.00 0.00 4.63
156 157 1.507141 CTTGAAAGTTGCGCCTCGGT 61.507 55.000 4.18 0.00 0.00 4.69
157 158 1.098712 TTGAAAGTTGCGCCTCGGTT 61.099 50.000 4.18 0.00 0.00 4.44
158 159 1.098712 TGAAAGTTGCGCCTCGGTTT 61.099 50.000 4.18 0.00 0.00 3.27
159 160 0.385598 GAAAGTTGCGCCTCGGTTTC 60.386 55.000 4.18 3.52 0.00 2.78
160 161 1.792118 AAAGTTGCGCCTCGGTTTCC 61.792 55.000 4.18 0.00 0.00 3.13
161 162 2.668550 GTTGCGCCTCGGTTTCCT 60.669 61.111 4.18 0.00 0.00 3.36
162 163 2.112297 TTGCGCCTCGGTTTCCTT 59.888 55.556 4.18 0.00 0.00 3.36
163 164 0.952010 GTTGCGCCTCGGTTTCCTTA 60.952 55.000 4.18 0.00 0.00 2.69
164 165 0.035820 TTGCGCCTCGGTTTCCTTAT 60.036 50.000 4.18 0.00 0.00 1.73
165 166 0.825410 TGCGCCTCGGTTTCCTTATA 59.175 50.000 4.18 0.00 0.00 0.98
166 167 1.215244 GCGCCTCGGTTTCCTTATAC 58.785 55.000 0.00 0.00 0.00 1.47
167 168 1.484356 CGCCTCGGTTTCCTTATACG 58.516 55.000 0.00 0.00 0.00 3.06
168 169 1.202336 CGCCTCGGTTTCCTTATACGT 60.202 52.381 0.00 0.00 0.00 3.57
169 170 2.033299 CGCCTCGGTTTCCTTATACGTA 59.967 50.000 0.00 0.00 0.00 3.57
170 171 3.489059 CGCCTCGGTTTCCTTATACGTAA 60.489 47.826 0.00 0.00 0.00 3.18
171 172 4.625028 GCCTCGGTTTCCTTATACGTAAT 58.375 43.478 0.00 0.00 0.00 1.89
172 173 5.562696 CGCCTCGGTTTCCTTATACGTAATA 60.563 44.000 0.00 0.00 0.00 0.98
173 174 6.393171 GCCTCGGTTTCCTTATACGTAATAT 58.607 40.000 0.00 0.00 0.00 1.28
174 175 7.538575 GCCTCGGTTTCCTTATACGTAATATA 58.461 38.462 0.00 0.00 0.00 0.86
175 176 8.028938 GCCTCGGTTTCCTTATACGTAATATAA 58.971 37.037 0.00 0.00 35.01 0.98
208 209 8.719560 TCCTGCAAAAATATATACGTACAACA 57.280 30.769 0.00 0.00 0.00 3.33
209 210 9.163899 TCCTGCAAAAATATATACGTACAACAA 57.836 29.630 0.00 0.00 0.00 2.83
210 211 9.433317 CCTGCAAAAATATATACGTACAACAAG 57.567 33.333 0.00 0.00 0.00 3.16
219 220 9.811995 ATATATACGTACAACAAGAAAAGCTGA 57.188 29.630 0.00 0.00 0.00 4.26
220 221 6.854496 ATACGTACAACAAGAAAAGCTGAA 57.146 33.333 0.00 0.00 0.00 3.02
221 222 5.554822 ACGTACAACAAGAAAAGCTGAAA 57.445 34.783 0.00 0.00 0.00 2.69
222 223 5.945155 ACGTACAACAAGAAAAGCTGAAAA 58.055 33.333 0.00 0.00 0.00 2.29
223 224 6.383415 ACGTACAACAAGAAAAGCTGAAAAA 58.617 32.000 0.00 0.00 0.00 1.94
224 225 6.526674 ACGTACAACAAGAAAAGCTGAAAAAG 59.473 34.615 0.00 0.00 0.00 2.27
225 226 6.020678 CGTACAACAAGAAAAGCTGAAAAAGG 60.021 38.462 0.00 0.00 0.00 3.11
226 227 6.036577 ACAACAAGAAAAGCTGAAAAAGGA 57.963 33.333 0.00 0.00 0.00 3.36
227 228 6.463360 ACAACAAGAAAAGCTGAAAAAGGAA 58.537 32.000 0.00 0.00 0.00 3.36
228 229 6.934083 ACAACAAGAAAAGCTGAAAAAGGAAA 59.066 30.769 0.00 0.00 0.00 3.13
229 230 6.968131 ACAAGAAAAGCTGAAAAAGGAAAC 57.032 33.333 0.00 0.00 0.00 2.78
230 231 5.874810 ACAAGAAAAGCTGAAAAAGGAAACC 59.125 36.000 0.00 0.00 0.00 3.27
231 232 5.675684 AGAAAAGCTGAAAAAGGAAACCA 57.324 34.783 0.00 0.00 0.00 3.67
232 233 5.419542 AGAAAAGCTGAAAAAGGAAACCAC 58.580 37.500 0.00 0.00 0.00 4.16
233 234 4.817318 AAAGCTGAAAAAGGAAACCACA 57.183 36.364 0.00 0.00 0.00 4.17
234 235 3.801114 AGCTGAAAAAGGAAACCACAC 57.199 42.857 0.00 0.00 0.00 3.82
235 236 3.096092 AGCTGAAAAAGGAAACCACACA 58.904 40.909 0.00 0.00 0.00 3.72
236 237 3.131046 AGCTGAAAAAGGAAACCACACAG 59.869 43.478 0.00 0.00 0.00 3.66
237 238 3.447742 CTGAAAAAGGAAACCACACAGC 58.552 45.455 0.00 0.00 0.00 4.40
238 239 2.159310 TGAAAAAGGAAACCACACAGCG 60.159 45.455 0.00 0.00 0.00 5.18
239 240 1.470051 AAAAGGAAACCACACAGCGT 58.530 45.000 0.00 0.00 0.00 5.07
240 241 2.335316 AAAGGAAACCACACAGCGTA 57.665 45.000 0.00 0.00 0.00 4.42
241 242 2.335316 AAGGAAACCACACAGCGTAA 57.665 45.000 0.00 0.00 0.00 3.18
242 243 2.335316 AGGAAACCACACAGCGTAAA 57.665 45.000 0.00 0.00 0.00 2.01
243 244 1.944709 AGGAAACCACACAGCGTAAAC 59.055 47.619 0.00 0.00 0.00 2.01
244 245 1.333435 GGAAACCACACAGCGTAAACG 60.333 52.381 0.00 0.00 43.27 3.60
245 246 1.593933 GAAACCACACAGCGTAAACGA 59.406 47.619 6.71 0.00 43.02 3.85
246 247 1.654317 AACCACACAGCGTAAACGAA 58.346 45.000 6.71 0.00 43.02 3.85
247 248 0.932399 ACCACACAGCGTAAACGAAC 59.068 50.000 6.71 0.00 43.02 3.95
248 249 1.214367 CCACACAGCGTAAACGAACT 58.786 50.000 6.71 0.00 43.02 3.01
249 250 2.223782 ACCACACAGCGTAAACGAACTA 60.224 45.455 6.71 0.00 43.02 2.24
250 251 2.796031 CCACACAGCGTAAACGAACTAA 59.204 45.455 6.71 0.00 43.02 2.24
251 252 3.362304 CCACACAGCGTAAACGAACTAAC 60.362 47.826 6.71 0.00 43.02 2.34
252 253 3.243410 CACACAGCGTAAACGAACTAACA 59.757 43.478 6.71 0.00 43.02 2.41
253 254 3.243643 ACACAGCGTAAACGAACTAACAC 59.756 43.478 6.71 0.00 43.02 3.32
254 255 2.468777 ACAGCGTAAACGAACTAACACG 59.531 45.455 6.71 0.00 43.02 4.49
255 256 2.053627 AGCGTAAACGAACTAACACGG 58.946 47.619 6.71 0.00 43.02 4.94
256 257 2.050691 GCGTAAACGAACTAACACGGA 58.949 47.619 6.71 0.00 43.02 4.69
257 258 2.160104 GCGTAAACGAACTAACACGGAC 60.160 50.000 6.71 0.00 43.02 4.79
258 259 2.087451 CGTAAACGAACTAACACGGACG 59.913 50.000 0.00 0.00 43.02 4.79
259 260 2.208326 AAACGAACTAACACGGACGT 57.792 45.000 0.00 0.00 35.56 4.34
260 261 2.208326 AACGAACTAACACGGACGTT 57.792 45.000 0.00 0.00 38.72 3.99
261 262 1.480205 ACGAACTAACACGGACGTTG 58.520 50.000 0.00 0.00 0.00 4.10
262 263 1.202290 ACGAACTAACACGGACGTTGT 60.202 47.619 0.00 0.00 0.00 3.32
263 264 1.188573 CGAACTAACACGGACGTTGTG 59.811 52.381 17.25 17.25 42.99 3.33
264 265 0.932399 AACTAACACGGACGTTGTGC 59.068 50.000 18.37 0.00 41.03 4.57
265 266 0.877213 ACTAACACGGACGTTGTGCC 60.877 55.000 18.37 1.59 41.03 5.01
266 267 0.599204 CTAACACGGACGTTGTGCCT 60.599 55.000 18.37 10.58 41.03 4.75
267 268 0.179078 TAACACGGACGTTGTGCCTT 60.179 50.000 18.37 10.78 41.03 4.35
268 269 1.711060 AACACGGACGTTGTGCCTTG 61.711 55.000 18.37 8.50 41.03 3.61
269 270 2.590575 ACGGACGTTGTGCCTTGG 60.591 61.111 0.00 0.00 0.00 3.61
270 271 3.353836 CGGACGTTGTGCCTTGGG 61.354 66.667 0.00 0.00 0.00 4.12
271 272 2.112297 GGACGTTGTGCCTTGGGA 59.888 61.111 0.00 0.00 0.00 4.37
272 273 1.527380 GGACGTTGTGCCTTGGGAA 60.527 57.895 0.00 0.00 0.00 3.97
273 274 0.893727 GGACGTTGTGCCTTGGGAAT 60.894 55.000 0.00 0.00 0.00 3.01
274 275 0.958822 GACGTTGTGCCTTGGGAATT 59.041 50.000 0.00 0.00 0.00 2.17
275 276 0.958822 ACGTTGTGCCTTGGGAATTC 59.041 50.000 0.00 0.00 0.00 2.17
276 277 0.958091 CGTTGTGCCTTGGGAATTCA 59.042 50.000 7.93 0.00 0.00 2.57
277 278 1.339610 CGTTGTGCCTTGGGAATTCAA 59.660 47.619 7.93 0.00 0.00 2.69
278 279 2.029110 CGTTGTGCCTTGGGAATTCAAT 60.029 45.455 7.93 0.00 0.00 2.57
279 280 3.328505 GTTGTGCCTTGGGAATTCAATG 58.671 45.455 7.93 0.00 0.00 2.82
280 281 2.607499 TGTGCCTTGGGAATTCAATGT 58.393 42.857 7.93 0.00 0.00 2.71
281 282 2.299582 TGTGCCTTGGGAATTCAATGTG 59.700 45.455 7.93 0.00 0.00 3.21
282 283 2.562298 GTGCCTTGGGAATTCAATGTGA 59.438 45.455 7.93 0.00 0.00 3.58
283 284 3.006752 GTGCCTTGGGAATTCAATGTGAA 59.993 43.478 7.93 0.00 41.09 3.18
284 285 3.258872 TGCCTTGGGAATTCAATGTGAAG 59.741 43.478 7.93 0.05 40.05 3.02
285 286 3.259123 GCCTTGGGAATTCAATGTGAAGT 59.741 43.478 7.93 0.00 40.05 3.01
286 287 4.462483 GCCTTGGGAATTCAATGTGAAGTA 59.538 41.667 7.93 0.00 40.05 2.24
287 288 5.127682 GCCTTGGGAATTCAATGTGAAGTAT 59.872 40.000 7.93 0.00 40.05 2.12
288 289 6.321181 GCCTTGGGAATTCAATGTGAAGTATA 59.679 38.462 7.93 0.00 40.05 1.47
289 290 7.147915 GCCTTGGGAATTCAATGTGAAGTATAA 60.148 37.037 7.93 0.00 40.05 0.98
290 291 8.748412 CCTTGGGAATTCAATGTGAAGTATAAA 58.252 33.333 7.93 0.00 40.05 1.40
291 292 9.573133 CTTGGGAATTCAATGTGAAGTATAAAC 57.427 33.333 7.93 0.00 40.05 2.01
292 293 8.642935 TGGGAATTCAATGTGAAGTATAAACA 57.357 30.769 7.93 0.00 40.05 2.83
293 294 8.519526 TGGGAATTCAATGTGAAGTATAAACAC 58.480 33.333 7.93 0.00 40.05 3.32
294 295 8.519526 GGGAATTCAATGTGAAGTATAAACACA 58.480 33.333 7.93 0.00 46.04 3.72
295 296 9.559958 GGAATTCAATGTGAAGTATAAACACAG 57.440 33.333 7.93 0.00 45.38 3.66
298 299 7.346208 TCAATGTGAAGTATAAACACAGACG 57.654 36.000 0.00 0.00 45.38 4.18
299 300 6.926826 TCAATGTGAAGTATAAACACAGACGT 59.073 34.615 0.00 0.00 45.38 4.34
300 301 6.946229 ATGTGAAGTATAAACACAGACGTC 57.054 37.500 7.70 7.70 45.38 4.34
301 302 4.913345 TGTGAAGTATAAACACAGACGTCG 59.087 41.667 10.46 7.86 39.17 5.12
302 303 4.913924 GTGAAGTATAAACACAGACGTCGT 59.086 41.667 10.46 8.54 35.06 4.34
303 304 5.400485 GTGAAGTATAAACACAGACGTCGTT 59.600 40.000 10.46 5.69 35.06 3.85
304 305 5.626543 TGAAGTATAAACACAGACGTCGTTC 59.373 40.000 10.46 3.61 0.00 3.95
305 306 5.112220 AGTATAAACACAGACGTCGTTCA 57.888 39.130 10.46 0.00 0.00 3.18
306 307 5.522456 AGTATAAACACAGACGTCGTTCAA 58.478 37.500 10.46 1.69 0.00 2.69
307 308 6.154445 AGTATAAACACAGACGTCGTTCAAT 58.846 36.000 10.46 8.41 0.00 2.57
308 309 3.854286 AAACACAGACGTCGTTCAATC 57.146 42.857 10.46 0.00 0.00 2.67
309 310 2.502213 ACACAGACGTCGTTCAATCA 57.498 45.000 10.46 0.00 0.00 2.57
310 311 2.816689 ACACAGACGTCGTTCAATCAA 58.183 42.857 10.46 0.00 0.00 2.57
311 312 3.191669 ACACAGACGTCGTTCAATCAAA 58.808 40.909 10.46 0.00 0.00 2.69
312 313 3.807622 ACACAGACGTCGTTCAATCAAAT 59.192 39.130 10.46 0.00 0.00 2.32
313 314 4.272504 ACACAGACGTCGTTCAATCAAATT 59.727 37.500 10.46 0.00 0.00 1.82
314 315 4.608470 CACAGACGTCGTTCAATCAAATTG 59.392 41.667 10.46 0.34 41.57 2.32
315 316 4.151070 CAGACGTCGTTCAATCAAATTGG 58.849 43.478 10.46 0.00 40.61 3.16
316 317 4.062293 AGACGTCGTTCAATCAAATTGGA 58.938 39.130 10.46 0.00 40.61 3.53
317 318 4.084013 AGACGTCGTTCAATCAAATTGGAC 60.084 41.667 10.46 1.66 43.78 4.02
318 319 3.562141 ACGTCGTTCAATCAAATTGGACA 59.438 39.130 10.78 0.00 46.84 4.02
319 320 4.151070 CGTCGTTCAATCAAATTGGACAG 58.849 43.478 10.78 4.89 46.84 3.51
320 321 4.084066 CGTCGTTCAATCAAATTGGACAGA 60.084 41.667 10.78 6.69 46.84 3.41
321 322 5.559991 CGTCGTTCAATCAAATTGGACAGAA 60.560 40.000 10.78 0.00 46.84 3.02
322 323 6.381801 GTCGTTCAATCAAATTGGACAGAAT 58.618 36.000 10.78 0.00 46.84 2.40
323 324 6.863126 GTCGTTCAATCAAATTGGACAGAATT 59.137 34.615 10.78 0.00 46.84 2.17
324 325 7.061094 GTCGTTCAATCAAATTGGACAGAATTC 59.939 37.037 10.78 0.00 46.84 2.17
325 326 6.862608 CGTTCAATCAAATTGGACAGAATTCA 59.137 34.615 8.44 0.00 46.84 2.57
326 327 7.381948 CGTTCAATCAAATTGGACAGAATTCAA 59.618 33.333 8.44 0.00 46.84 2.69
327 328 9.044150 GTTCAATCAAATTGGACAGAATTCAAA 57.956 29.630 8.44 0.00 45.97 2.69
328 329 9.610705 TTCAATCAAATTGGACAGAATTCAAAA 57.389 25.926 8.44 0.00 40.61 2.44
329 330 9.610705 TCAATCAAATTGGACAGAATTCAAAAA 57.389 25.926 8.44 0.00 40.61 1.94
330 331 9.872757 CAATCAAATTGGACAGAATTCAAAAAG 57.127 29.630 8.44 0.00 36.63 2.27
331 332 9.617523 AATCAAATTGGACAGAATTCAAAAAGT 57.382 25.926 8.44 0.00 0.00 2.66
338 339 9.528018 TTGGACAGAATTCAAAAAGTAAATCAC 57.472 29.630 8.44 0.00 0.00 3.06
339 340 8.141268 TGGACAGAATTCAAAAAGTAAATCACC 58.859 33.333 8.44 0.00 0.00 4.02
345 346 8.593492 AATTCAAAAAGTAAATCACCAGAAGC 57.407 30.769 0.00 0.00 0.00 3.86
379 380 3.566130 GGAGATGCCTGCTTCAGTT 57.434 52.632 7.63 0.00 0.00 3.16
380 381 1.831580 GGAGATGCCTGCTTCAGTTT 58.168 50.000 7.63 0.00 0.00 2.66
381 382 1.742268 GGAGATGCCTGCTTCAGTTTC 59.258 52.381 7.63 0.00 0.00 2.78
383 384 0.813821 GATGCCTGCTTCAGTTTCCC 59.186 55.000 0.59 0.00 0.00 3.97
393 394 2.380064 TCAGTTTCCCACATTTGGCT 57.620 45.000 0.00 0.00 42.35 4.75
394 395 1.962807 TCAGTTTCCCACATTTGGCTG 59.037 47.619 0.00 0.00 42.35 4.85
395 396 1.001181 CAGTTTCCCACATTTGGCTGG 59.999 52.381 0.00 0.00 42.35 4.85
396 397 0.320683 GTTTCCCACATTTGGCTGGC 60.321 55.000 0.00 0.00 42.35 4.85
398 399 3.393106 CCCACATTTGGCTGGCCC 61.393 66.667 9.28 0.00 42.35 5.80
399 400 2.604079 CCACATTTGGCTGGCCCA 60.604 61.111 9.28 0.00 43.51 5.36
409 410 0.475906 GGCTGGCCCAATATCTCACT 59.524 55.000 0.00 0.00 0.00 3.41
410 411 1.544314 GGCTGGCCCAATATCTCACTC 60.544 57.143 0.00 0.00 0.00 3.51
411 412 1.419387 GCTGGCCCAATATCTCACTCT 59.581 52.381 0.00 0.00 0.00 3.24
417 418 3.494048 GCCCAATATCTCACTCTCACCAG 60.494 52.174 0.00 0.00 0.00 4.00
422 423 1.621992 TCTCACTCTCACCAGTCACC 58.378 55.000 0.00 0.00 0.00 4.02
423 424 1.133482 TCTCACTCTCACCAGTCACCA 60.133 52.381 0.00 0.00 0.00 4.17
566 576 2.227865 GGTCATCTCTAGGAGCGACATC 59.772 54.545 14.22 0.00 35.22 3.06
642 652 2.569059 ACATGATGCTCTACATGGTGC 58.431 47.619 0.00 0.00 45.31 5.01
1013 1031 1.672356 GCAACATGGACGAGCACCT 60.672 57.895 0.00 0.00 0.00 4.00
1227 1245 3.080121 CTCCTGGAGCTCGGCCTT 61.080 66.667 11.42 0.00 0.00 4.35
1488 2793 3.315470 GGAAAAAGAAACGCTCTTCCAGT 59.685 43.478 1.16 0.00 44.00 4.00
1564 2869 0.954452 GCAGGAATTGGGGATTAGCG 59.046 55.000 0.00 0.00 0.00 4.26
1765 3222 1.785041 GCGCTGTGAAGAAAGTGCCA 61.785 55.000 0.00 0.00 42.72 4.92
1796 3253 1.867595 ATGCTTCCCCAACCTGGAGG 61.868 60.000 0.00 1.36 40.96 4.30
1816 3273 1.064060 GCGCTCCATGTCCATGTAAAC 59.936 52.381 0.00 0.00 37.11 2.01
1911 3486 9.743581 AGCATGGTCATAATTGATTGTATATCA 57.256 29.630 0.00 0.00 33.56 2.15
1931 3553 3.390311 TCAAGCATGGTCAGAGCTATGAT 59.610 43.478 15.19 0.00 37.70 2.45
1980 3604 2.260844 TGCTGCTGCATTATACTCCC 57.739 50.000 14.93 0.00 45.31 4.30
1981 3605 1.770658 TGCTGCTGCATTATACTCCCT 59.229 47.619 14.93 0.00 45.31 4.20
1982 3606 2.224378 TGCTGCTGCATTATACTCCCTC 60.224 50.000 14.93 0.00 45.31 4.30
1983 3607 2.873649 GCTGCTGCATTATACTCCCTCC 60.874 54.545 11.11 0.00 39.41 4.30
1984 3608 1.344438 TGCTGCATTATACTCCCTCCG 59.656 52.381 0.00 0.00 0.00 4.63
1985 3609 1.344763 GCTGCATTATACTCCCTCCGT 59.655 52.381 0.00 0.00 0.00 4.69
1986 3610 2.224305 GCTGCATTATACTCCCTCCGTT 60.224 50.000 0.00 0.00 0.00 4.44
1987 3611 3.654414 CTGCATTATACTCCCTCCGTTC 58.346 50.000 0.00 0.00 0.00 3.95
1988 3612 2.367567 TGCATTATACTCCCTCCGTTCC 59.632 50.000 0.00 0.00 0.00 3.62
1989 3613 2.367567 GCATTATACTCCCTCCGTTCCA 59.632 50.000 0.00 0.00 0.00 3.53
1990 3614 3.008049 GCATTATACTCCCTCCGTTCCAT 59.992 47.826 0.00 0.00 0.00 3.41
1991 3615 4.222145 GCATTATACTCCCTCCGTTCCATA 59.778 45.833 0.00 0.00 0.00 2.74
1992 3616 5.104900 GCATTATACTCCCTCCGTTCCATAT 60.105 44.000 0.00 0.00 0.00 1.78
1993 3617 6.576442 GCATTATACTCCCTCCGTTCCATATT 60.576 42.308 0.00 0.00 0.00 1.28
1994 3618 7.364408 GCATTATACTCCCTCCGTTCCATATTA 60.364 40.741 0.00 0.00 0.00 0.98
1995 3619 5.997384 ATACTCCCTCCGTTCCATATTAC 57.003 43.478 0.00 0.00 0.00 1.89
1996 3620 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
1997 3621 4.296056 ACTCCCTCCGTTCCATATTACTT 58.704 43.478 0.00 0.00 0.00 2.24
1998 3622 4.101119 ACTCCCTCCGTTCCATATTACTTG 59.899 45.833 0.00 0.00 0.00 3.16
1999 3623 4.035112 TCCCTCCGTTCCATATTACTTGT 58.965 43.478 0.00 0.00 0.00 3.16
2000 3624 4.100498 TCCCTCCGTTCCATATTACTTGTC 59.900 45.833 0.00 0.00 0.00 3.18
2001 3625 4.049186 CCTCCGTTCCATATTACTTGTCG 58.951 47.826 0.00 0.00 0.00 4.35
2002 3626 4.441079 CCTCCGTTCCATATTACTTGTCGT 60.441 45.833 0.00 0.00 0.00 4.34
2003 3627 5.075858 TCCGTTCCATATTACTTGTCGTT 57.924 39.130 0.00 0.00 0.00 3.85
2004 3628 4.865925 TCCGTTCCATATTACTTGTCGTTG 59.134 41.667 0.00 0.00 0.00 4.10
2005 3629 4.628333 CCGTTCCATATTACTTGTCGTTGT 59.372 41.667 0.00 0.00 0.00 3.32
2006 3630 5.806502 CCGTTCCATATTACTTGTCGTTGTA 59.193 40.000 0.00 0.00 0.00 2.41
2007 3631 6.237648 CCGTTCCATATTACTTGTCGTTGTAC 60.238 42.308 0.00 0.00 0.00 2.90
2008 3632 6.529125 CGTTCCATATTACTTGTCGTTGTACT 59.471 38.462 0.00 0.00 0.00 2.73
2009 3633 7.697710 CGTTCCATATTACTTGTCGTTGTACTA 59.302 37.037 0.00 0.00 0.00 1.82
2010 3634 9.357652 GTTCCATATTACTTGTCGTTGTACTAA 57.642 33.333 0.00 0.00 0.00 2.24
2011 3635 9.926158 TTCCATATTACTTGTCGTTGTACTAAA 57.074 29.630 0.00 0.00 0.00 1.85
2017 3641 6.764877 ACTTGTCGTTGTACTAAATCAGTG 57.235 37.500 0.00 0.00 38.24 3.66
2018 3642 6.509656 ACTTGTCGTTGTACTAAATCAGTGA 58.490 36.000 0.00 0.00 38.24 3.41
2019 3643 6.420008 ACTTGTCGTTGTACTAAATCAGTGAC 59.580 38.462 0.00 0.00 38.24 3.67
2020 3644 4.913345 TGTCGTTGTACTAAATCAGTGACG 59.087 41.667 0.00 0.00 38.24 4.35
2021 3645 5.149273 GTCGTTGTACTAAATCAGTGACGA 58.851 41.667 0.00 0.00 41.66 4.20
2022 3646 5.283247 GTCGTTGTACTAAATCAGTGACGAG 59.717 44.000 0.00 0.00 43.05 4.18
2023 3647 5.049198 TCGTTGTACTAAATCAGTGACGAGT 60.049 40.000 0.00 1.72 40.37 4.18
2024 3648 6.147656 TCGTTGTACTAAATCAGTGACGAGTA 59.852 38.462 0.00 0.69 40.37 2.59
2025 3649 6.798476 CGTTGTACTAAATCAGTGACGAGTAA 59.202 38.462 10.62 0.00 39.59 2.24
2026 3650 7.484007 CGTTGTACTAAATCAGTGACGAGTAAT 59.516 37.037 10.62 0.00 39.59 1.89
2027 3651 9.778993 GTTGTACTAAATCAGTGACGAGTAATA 57.221 33.333 10.62 3.59 38.24 0.98
2029 3653 9.946165 TGTACTAAATCAGTGACGAGTAATATG 57.054 33.333 10.62 0.00 38.24 1.78
2030 3654 9.395707 GTACTAAATCAGTGACGAGTAATATGG 57.604 37.037 10.62 0.00 38.24 2.74
2031 3655 8.234136 ACTAAATCAGTGACGAGTAATATGGA 57.766 34.615 0.00 0.00 35.62 3.41
2032 3656 8.692710 ACTAAATCAGTGACGAGTAATATGGAA 58.307 33.333 0.00 0.00 35.62 3.53
2033 3657 7.772332 AAATCAGTGACGAGTAATATGGAAC 57.228 36.000 0.00 0.00 0.00 3.62
2034 3658 4.916870 TCAGTGACGAGTAATATGGAACG 58.083 43.478 0.00 0.00 0.00 3.95
2035 3659 4.042398 CAGTGACGAGTAATATGGAACGG 58.958 47.826 0.00 0.00 0.00 4.44
2036 3660 3.949754 AGTGACGAGTAATATGGAACGGA 59.050 43.478 0.00 0.00 0.00 4.69
2037 3661 4.036498 AGTGACGAGTAATATGGAACGGAG 59.964 45.833 0.00 0.00 0.00 4.63
2038 3662 3.317149 TGACGAGTAATATGGAACGGAGG 59.683 47.826 0.00 0.00 0.00 4.30
2039 3663 2.626743 ACGAGTAATATGGAACGGAGGG 59.373 50.000 0.00 0.00 0.00 4.30
2040 3664 2.889045 CGAGTAATATGGAACGGAGGGA 59.111 50.000 0.00 0.00 0.00 4.20
2041 3665 3.057456 CGAGTAATATGGAACGGAGGGAG 60.057 52.174 0.00 0.00 0.00 4.30
2121 3758 1.918262 TGATTTCATCTGCAGTCCCCT 59.082 47.619 14.67 0.00 0.00 4.79
2331 3976 1.208293 GCCGAGGAATGTTTCTCTCCT 59.792 52.381 0.00 0.00 42.44 3.69
2344 3989 1.055040 CTCTCCTGGGGATGATGGTC 58.945 60.000 0.00 0.00 0.00 4.02
2480 4125 2.041701 AGCTGCTGATTTTGGGTTTGT 58.958 42.857 0.00 0.00 0.00 2.83
2576 4236 1.190643 AGACCTGGCAGCTAGACTTC 58.809 55.000 9.56 0.82 0.00 3.01
2582 4242 1.890489 TGGCAGCTAGACTTCGTGTTA 59.110 47.619 0.00 0.00 0.00 2.41
2696 4359 6.100004 ACAGATCGAATTTGATAGTGTTCGT 58.900 36.000 8.23 0.00 42.74 3.85
3206 4870 1.056660 AGAACCGACCACCACAGATT 58.943 50.000 0.00 0.00 0.00 2.40
3533 5197 3.303135 AGCGAGACGAGGGCACAA 61.303 61.111 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.683572 AAAAATCCAGGCCCGGGC 60.684 61.111 38.57 38.57 41.06 6.13
22 23 1.040339 AGCCAAGCCCGACACAAAAA 61.040 50.000 0.00 0.00 0.00 1.94
23 24 0.179015 TAGCCAAGCCCGACACAAAA 60.179 50.000 0.00 0.00 0.00 2.44
24 25 0.605319 CTAGCCAAGCCCGACACAAA 60.605 55.000 0.00 0.00 0.00 2.83
25 26 1.003839 CTAGCCAAGCCCGACACAA 60.004 57.895 0.00 0.00 0.00 3.33
26 27 2.662596 CTAGCCAAGCCCGACACA 59.337 61.111 0.00 0.00 0.00 3.72
27 28 2.125106 CCTAGCCAAGCCCGACAC 60.125 66.667 0.00 0.00 0.00 3.67
28 29 4.096003 GCCTAGCCAAGCCCGACA 62.096 66.667 0.00 0.00 0.00 4.35
67 68 1.921869 ATACCTGGCCAAACCTCGGG 61.922 60.000 7.01 4.92 40.22 5.14
68 69 0.834612 TATACCTGGCCAAACCTCGG 59.165 55.000 7.01 5.79 40.22 4.63
69 70 1.208535 TGTATACCTGGCCAAACCTCG 59.791 52.381 7.01 0.00 40.22 4.63
70 71 3.136626 AGATGTATACCTGGCCAAACCTC 59.863 47.826 7.01 3.27 40.22 3.85
71 72 3.123273 AGATGTATACCTGGCCAAACCT 58.877 45.455 7.01 0.00 40.22 3.50
72 73 3.577805 AGATGTATACCTGGCCAAACC 57.422 47.619 7.01 0.00 39.84 3.27
73 74 4.505039 CCCTAGATGTATACCTGGCCAAAC 60.505 50.000 7.01 0.69 0.00 2.93
74 75 3.650942 CCCTAGATGTATACCTGGCCAAA 59.349 47.826 7.01 0.00 0.00 3.28
75 76 3.116512 TCCCTAGATGTATACCTGGCCAA 60.117 47.826 7.01 0.00 0.00 4.52
76 77 2.453212 TCCCTAGATGTATACCTGGCCA 59.547 50.000 4.71 4.71 0.00 5.36
77 78 3.185880 TCCCTAGATGTATACCTGGCC 57.814 52.381 0.00 0.00 0.00 5.36
78 79 3.381908 CGATCCCTAGATGTATACCTGGC 59.618 52.174 0.00 0.00 30.90 4.85
79 80 4.601084 ACGATCCCTAGATGTATACCTGG 58.399 47.826 0.00 0.00 30.90 4.45
80 81 5.502079 AGACGATCCCTAGATGTATACCTG 58.498 45.833 0.00 0.00 30.90 4.00
81 82 5.782677 AGACGATCCCTAGATGTATACCT 57.217 43.478 0.00 0.00 30.90 3.08
82 83 5.393243 GCAAGACGATCCCTAGATGTATACC 60.393 48.000 0.00 0.00 30.90 2.73
83 84 5.642686 GCAAGACGATCCCTAGATGTATAC 58.357 45.833 0.00 0.00 30.90 1.47
84 85 5.899120 GCAAGACGATCCCTAGATGTATA 57.101 43.478 0.00 0.00 30.90 1.47
85 86 4.792521 GCAAGACGATCCCTAGATGTAT 57.207 45.455 0.00 0.00 30.90 2.29
95 96 0.734942 TTCGTTCCGCAAGACGATCC 60.735 55.000 6.31 0.00 46.25 3.36
96 97 0.365859 GTTCGTTCCGCAAGACGATC 59.634 55.000 6.31 3.05 46.25 3.69
97 98 1.012486 GGTTCGTTCCGCAAGACGAT 61.012 55.000 6.31 0.00 46.25 3.73
99 100 2.851104 GGTTCGTTCCGCAAGACG 59.149 61.111 0.00 0.00 43.15 4.18
100 101 2.851104 CGGTTCGTTCCGCAAGAC 59.149 61.111 7.89 0.00 43.96 3.01
107 108 3.891056 AGAAAATTCACGGTTCGTTCC 57.109 42.857 0.00 0.00 38.32 3.62
108 109 5.091910 AGAAGAAAATTCACGGTTCGTTC 57.908 39.130 0.00 0.00 38.32 3.95
109 110 5.494632 AAGAAGAAAATTCACGGTTCGTT 57.505 34.783 0.00 0.00 38.32 3.85
110 111 5.494632 AAAGAAGAAAATTCACGGTTCGT 57.505 34.783 0.00 0.00 42.36 3.85
111 112 6.627274 CAAAAAGAAGAAAATTCACGGTTCG 58.373 36.000 0.00 0.00 0.00 3.95
112 113 6.410845 GCAAAAAGAAGAAAATTCACGGTTC 58.589 36.000 0.00 0.00 0.00 3.62
113 114 5.293324 GGCAAAAAGAAGAAAATTCACGGTT 59.707 36.000 0.00 0.00 0.00 4.44
114 115 4.808895 GGCAAAAAGAAGAAAATTCACGGT 59.191 37.500 0.00 0.00 0.00 4.83
115 116 5.049828 AGGCAAAAAGAAGAAAATTCACGG 58.950 37.500 0.00 0.00 0.00 4.94
116 117 6.255453 TCAAGGCAAAAAGAAGAAAATTCACG 59.745 34.615 0.00 0.00 0.00 4.35
117 118 7.538303 TCAAGGCAAAAAGAAGAAAATTCAC 57.462 32.000 0.00 0.00 0.00 3.18
118 119 8.558973 TTTCAAGGCAAAAAGAAGAAAATTCA 57.441 26.923 0.00 0.00 0.00 2.57
119 120 8.668353 ACTTTCAAGGCAAAAAGAAGAAAATTC 58.332 29.630 11.60 0.00 36.27 2.17
120 121 8.565896 ACTTTCAAGGCAAAAAGAAGAAAATT 57.434 26.923 11.60 0.00 36.27 1.82
121 122 8.453320 CAACTTTCAAGGCAAAAAGAAGAAAAT 58.547 29.630 11.60 0.00 36.27 1.82
122 123 7.572910 GCAACTTTCAAGGCAAAAAGAAGAAAA 60.573 33.333 11.60 0.00 36.27 2.29
123 124 6.128309 GCAACTTTCAAGGCAAAAAGAAGAAA 60.128 34.615 11.60 0.00 36.27 2.52
124 125 5.351189 GCAACTTTCAAGGCAAAAAGAAGAA 59.649 36.000 11.60 0.00 36.27 2.52
125 126 4.869861 GCAACTTTCAAGGCAAAAAGAAGA 59.130 37.500 11.60 0.00 36.27 2.87
126 127 4.259930 CGCAACTTTCAAGGCAAAAAGAAG 60.260 41.667 11.60 6.08 36.27 2.85
127 128 3.616379 CGCAACTTTCAAGGCAAAAAGAA 59.384 39.130 11.60 0.00 36.27 2.52
128 129 3.186119 CGCAACTTTCAAGGCAAAAAGA 58.814 40.909 11.60 0.00 36.27 2.52
129 130 2.285776 GCGCAACTTTCAAGGCAAAAAG 60.286 45.455 0.30 5.16 38.24 2.27
130 131 1.663135 GCGCAACTTTCAAGGCAAAAA 59.337 42.857 0.30 0.00 0.00 1.94
131 132 1.285578 GCGCAACTTTCAAGGCAAAA 58.714 45.000 0.30 0.00 0.00 2.44
132 133 0.529555 GGCGCAACTTTCAAGGCAAA 60.530 50.000 10.83 0.00 0.00 3.68
133 134 1.067250 GGCGCAACTTTCAAGGCAA 59.933 52.632 10.83 0.00 0.00 4.52
134 135 1.795170 GAGGCGCAACTTTCAAGGCA 61.795 55.000 10.83 0.00 0.00 4.75
135 136 1.081175 GAGGCGCAACTTTCAAGGC 60.081 57.895 10.83 0.00 0.00 4.35
136 137 1.207593 CGAGGCGCAACTTTCAAGG 59.792 57.895 10.83 0.00 0.00 3.61
137 138 1.207593 CCGAGGCGCAACTTTCAAG 59.792 57.895 10.83 0.00 0.00 3.02
138 139 1.098712 AACCGAGGCGCAACTTTCAA 61.099 50.000 10.83 0.00 0.00 2.69
139 140 1.098712 AAACCGAGGCGCAACTTTCA 61.099 50.000 10.83 0.00 0.00 2.69
140 141 0.385598 GAAACCGAGGCGCAACTTTC 60.386 55.000 10.83 4.69 0.00 2.62
141 142 1.652563 GAAACCGAGGCGCAACTTT 59.347 52.632 10.83 0.00 0.00 2.66
142 143 2.258726 GGAAACCGAGGCGCAACTT 61.259 57.895 10.83 0.00 0.00 2.66
143 144 2.668550 GGAAACCGAGGCGCAACT 60.669 61.111 10.83 0.00 0.00 3.16
144 145 0.952010 TAAGGAAACCGAGGCGCAAC 60.952 55.000 10.83 0.53 0.00 4.17
145 146 0.035820 ATAAGGAAACCGAGGCGCAA 60.036 50.000 10.83 0.00 0.00 4.85
146 147 0.825410 TATAAGGAAACCGAGGCGCA 59.175 50.000 10.83 0.00 0.00 6.09
147 148 1.215244 GTATAAGGAAACCGAGGCGC 58.785 55.000 0.00 0.00 0.00 6.53
148 149 1.202336 ACGTATAAGGAAACCGAGGCG 60.202 52.381 0.00 0.00 0.00 5.52
149 150 2.591571 ACGTATAAGGAAACCGAGGC 57.408 50.000 0.00 0.00 0.00 4.70
182 183 9.332502 TGTTGTACGTATATATTTTTGCAGGAT 57.667 29.630 0.00 0.00 0.00 3.24
183 184 8.719560 TGTTGTACGTATATATTTTTGCAGGA 57.280 30.769 0.00 0.00 0.00 3.86
184 185 9.433317 CTTGTTGTACGTATATATTTTTGCAGG 57.567 33.333 0.00 0.00 0.00 4.85
193 194 9.811995 TCAGCTTTTCTTGTTGTACGTATATAT 57.188 29.630 0.00 0.00 0.00 0.86
194 195 9.642327 TTCAGCTTTTCTTGTTGTACGTATATA 57.358 29.630 0.00 0.00 0.00 0.86
195 196 8.542497 TTCAGCTTTTCTTGTTGTACGTATAT 57.458 30.769 0.00 0.00 0.00 0.86
196 197 7.949903 TTCAGCTTTTCTTGTTGTACGTATA 57.050 32.000 0.00 0.00 0.00 1.47
197 198 6.854496 TTCAGCTTTTCTTGTTGTACGTAT 57.146 33.333 0.00 0.00 0.00 3.06
198 199 6.665474 TTTCAGCTTTTCTTGTTGTACGTA 57.335 33.333 0.00 0.00 0.00 3.57
199 200 5.554822 TTTCAGCTTTTCTTGTTGTACGT 57.445 34.783 0.00 0.00 0.00 3.57
200 201 6.020678 CCTTTTTCAGCTTTTCTTGTTGTACG 60.021 38.462 0.00 0.00 0.00 3.67
201 202 7.033185 TCCTTTTTCAGCTTTTCTTGTTGTAC 58.967 34.615 0.00 0.00 0.00 2.90
202 203 7.164230 TCCTTTTTCAGCTTTTCTTGTTGTA 57.836 32.000 0.00 0.00 0.00 2.41
203 204 6.036577 TCCTTTTTCAGCTTTTCTTGTTGT 57.963 33.333 0.00 0.00 0.00 3.32
204 205 6.966435 TTCCTTTTTCAGCTTTTCTTGTTG 57.034 33.333 0.00 0.00 0.00 3.33
205 206 6.371548 GGTTTCCTTTTTCAGCTTTTCTTGTT 59.628 34.615 0.00 0.00 0.00 2.83
206 207 5.874810 GGTTTCCTTTTTCAGCTTTTCTTGT 59.125 36.000 0.00 0.00 0.00 3.16
207 208 5.874261 TGGTTTCCTTTTTCAGCTTTTCTTG 59.126 36.000 0.00 0.00 0.00 3.02
208 209 5.874810 GTGGTTTCCTTTTTCAGCTTTTCTT 59.125 36.000 0.00 0.00 0.00 2.52
209 210 5.046663 TGTGGTTTCCTTTTTCAGCTTTTCT 60.047 36.000 0.00 0.00 0.00 2.52
210 211 5.063438 GTGTGGTTTCCTTTTTCAGCTTTTC 59.937 40.000 0.00 0.00 0.00 2.29
211 212 4.935205 GTGTGGTTTCCTTTTTCAGCTTTT 59.065 37.500 0.00 0.00 0.00 2.27
212 213 4.020662 TGTGTGGTTTCCTTTTTCAGCTTT 60.021 37.500 0.00 0.00 0.00 3.51
213 214 3.513515 TGTGTGGTTTCCTTTTTCAGCTT 59.486 39.130 0.00 0.00 0.00 3.74
214 215 3.096092 TGTGTGGTTTCCTTTTTCAGCT 58.904 40.909 0.00 0.00 0.00 4.24
215 216 3.447742 CTGTGTGGTTTCCTTTTTCAGC 58.552 45.455 0.00 0.00 0.00 4.26
216 217 3.447742 GCTGTGTGGTTTCCTTTTTCAG 58.552 45.455 0.00 0.00 0.00 3.02
217 218 2.159310 CGCTGTGTGGTTTCCTTTTTCA 60.159 45.455 0.00 0.00 0.00 2.69
218 219 2.159296 ACGCTGTGTGGTTTCCTTTTTC 60.159 45.455 0.00 0.00 0.00 2.29
219 220 1.822371 ACGCTGTGTGGTTTCCTTTTT 59.178 42.857 0.00 0.00 0.00 1.94
220 221 1.470051 ACGCTGTGTGGTTTCCTTTT 58.530 45.000 0.00 0.00 0.00 2.27
221 222 2.335316 TACGCTGTGTGGTTTCCTTT 57.665 45.000 3.71 0.00 0.00 3.11
222 223 2.335316 TTACGCTGTGTGGTTTCCTT 57.665 45.000 3.71 0.00 0.00 3.36
223 224 1.944709 GTTTACGCTGTGTGGTTTCCT 59.055 47.619 3.71 0.00 0.00 3.36
224 225 1.333435 CGTTTACGCTGTGTGGTTTCC 60.333 52.381 3.71 0.00 0.00 3.13
225 226 1.593933 TCGTTTACGCTGTGTGGTTTC 59.406 47.619 3.71 0.00 39.60 2.78
226 227 1.654317 TCGTTTACGCTGTGTGGTTT 58.346 45.000 3.71 0.00 39.60 3.27
227 228 1.328374 GTTCGTTTACGCTGTGTGGTT 59.672 47.619 3.71 0.00 39.60 3.67
228 229 0.932399 GTTCGTTTACGCTGTGTGGT 59.068 50.000 3.71 0.00 39.60 4.16
229 230 1.214367 AGTTCGTTTACGCTGTGTGG 58.786 50.000 3.71 0.00 39.60 4.17
230 231 3.243410 TGTTAGTTCGTTTACGCTGTGTG 59.757 43.478 3.71 0.00 39.60 3.82
231 232 3.243643 GTGTTAGTTCGTTTACGCTGTGT 59.756 43.478 0.00 0.00 39.60 3.72
232 233 3.657325 CGTGTTAGTTCGTTTACGCTGTG 60.657 47.826 0.00 0.00 39.60 3.66
233 234 2.468777 CGTGTTAGTTCGTTTACGCTGT 59.531 45.455 0.00 0.00 39.60 4.40
234 235 2.160065 CCGTGTTAGTTCGTTTACGCTG 60.160 50.000 0.00 0.00 39.60 5.18
235 236 2.053627 CCGTGTTAGTTCGTTTACGCT 58.946 47.619 0.00 0.00 39.60 5.07
236 237 2.050691 TCCGTGTTAGTTCGTTTACGC 58.949 47.619 0.00 0.00 39.60 4.42
237 238 2.087451 CGTCCGTGTTAGTTCGTTTACG 59.913 50.000 0.00 0.00 41.45 3.18
238 239 3.042887 ACGTCCGTGTTAGTTCGTTTAC 58.957 45.455 0.00 0.00 0.00 2.01
239 240 3.347958 ACGTCCGTGTTAGTTCGTTTA 57.652 42.857 0.00 0.00 0.00 2.01
240 241 2.208326 ACGTCCGTGTTAGTTCGTTT 57.792 45.000 0.00 0.00 0.00 3.60
241 242 1.854126 CAACGTCCGTGTTAGTTCGTT 59.146 47.619 0.00 0.00 41.06 3.85
242 243 1.202290 ACAACGTCCGTGTTAGTTCGT 60.202 47.619 0.00 0.00 0.00 3.85
243 244 1.188573 CACAACGTCCGTGTTAGTTCG 59.811 52.381 9.34 0.00 0.00 3.95
244 245 1.071041 GCACAACGTCCGTGTTAGTTC 60.071 52.381 16.67 0.00 36.71 3.01
245 246 0.932399 GCACAACGTCCGTGTTAGTT 59.068 50.000 16.67 0.00 36.71 2.24
246 247 0.877213 GGCACAACGTCCGTGTTAGT 60.877 55.000 16.67 0.00 36.71 2.24
247 248 0.599204 AGGCACAACGTCCGTGTTAG 60.599 55.000 16.67 0.00 36.71 2.34
248 249 0.179078 AAGGCACAACGTCCGTGTTA 60.179 50.000 16.67 0.00 36.71 2.41
249 250 1.450669 AAGGCACAACGTCCGTGTT 60.451 52.632 16.67 4.60 36.71 3.32
250 251 2.177580 CAAGGCACAACGTCCGTGT 61.178 57.895 16.67 2.96 36.71 4.49
251 252 2.631428 CAAGGCACAACGTCCGTG 59.369 61.111 12.46 12.46 37.43 4.94
252 253 2.590575 CCAAGGCACAACGTCCGT 60.591 61.111 0.00 0.00 0.00 4.69
253 254 3.353836 CCCAAGGCACAACGTCCG 61.354 66.667 0.00 0.00 0.00 4.79
254 255 0.893727 ATTCCCAAGGCACAACGTCC 60.894 55.000 0.00 0.00 0.00 4.79
255 256 0.958822 AATTCCCAAGGCACAACGTC 59.041 50.000 0.00 0.00 0.00 4.34
256 257 0.958822 GAATTCCCAAGGCACAACGT 59.041 50.000 0.00 0.00 0.00 3.99
257 258 0.958091 TGAATTCCCAAGGCACAACG 59.042 50.000 2.27 0.00 0.00 4.10
258 259 3.244181 ACATTGAATTCCCAAGGCACAAC 60.244 43.478 2.27 0.00 31.70 3.32
259 260 2.971330 ACATTGAATTCCCAAGGCACAA 59.029 40.909 2.27 0.00 31.70 3.33
260 261 2.299582 CACATTGAATTCCCAAGGCACA 59.700 45.455 2.27 0.00 31.70 4.57
261 262 2.562298 TCACATTGAATTCCCAAGGCAC 59.438 45.455 2.27 0.00 31.70 5.01
262 263 2.886913 TCACATTGAATTCCCAAGGCA 58.113 42.857 2.27 0.00 31.70 4.75
263 264 3.259123 ACTTCACATTGAATTCCCAAGGC 59.741 43.478 2.27 0.00 35.59 4.35
264 265 6.780457 ATACTTCACATTGAATTCCCAAGG 57.220 37.500 2.27 0.00 35.59 3.61
265 266 9.573133 GTTTATACTTCACATTGAATTCCCAAG 57.427 33.333 2.27 0.00 35.59 3.61
266 267 9.083422 TGTTTATACTTCACATTGAATTCCCAA 57.917 29.630 2.27 0.00 35.59 4.12
267 268 8.519526 GTGTTTATACTTCACATTGAATTCCCA 58.480 33.333 2.27 0.00 35.59 4.37
268 269 8.519526 TGTGTTTATACTTCACATTGAATTCCC 58.480 33.333 2.27 0.00 35.59 3.97
269 270 9.559958 CTGTGTTTATACTTCACATTGAATTCC 57.440 33.333 2.27 0.00 40.49 3.01
272 273 8.443160 CGTCTGTGTTTATACTTCACATTGAAT 58.557 33.333 0.00 0.00 40.49 2.57
273 274 7.439955 ACGTCTGTGTTTATACTTCACATTGAA 59.560 33.333 0.00 0.00 40.49 2.69
274 275 6.926826 ACGTCTGTGTTTATACTTCACATTGA 59.073 34.615 0.00 0.00 40.49 2.57
275 276 7.117241 ACGTCTGTGTTTATACTTCACATTG 57.883 36.000 0.00 0.00 40.49 2.82
276 277 6.089016 CGACGTCTGTGTTTATACTTCACATT 59.911 38.462 14.70 0.00 40.49 2.71
277 278 5.571741 CGACGTCTGTGTTTATACTTCACAT 59.428 40.000 14.70 0.00 40.49 3.21
278 279 4.913345 CGACGTCTGTGTTTATACTTCACA 59.087 41.667 14.70 0.00 39.31 3.58
279 280 4.913924 ACGACGTCTGTGTTTATACTTCAC 59.086 41.667 14.70 0.00 0.00 3.18
280 281 5.112220 ACGACGTCTGTGTTTATACTTCA 57.888 39.130 14.70 0.00 0.00 3.02
281 282 5.626543 TGAACGACGTCTGTGTTTATACTTC 59.373 40.000 14.70 5.35 0.00 3.01
282 283 5.522456 TGAACGACGTCTGTGTTTATACTT 58.478 37.500 14.70 0.00 0.00 2.24
283 284 5.112220 TGAACGACGTCTGTGTTTATACT 57.888 39.130 14.70 0.00 0.00 2.12
284 285 5.811018 TTGAACGACGTCTGTGTTTATAC 57.189 39.130 14.70 0.00 0.00 1.47
285 286 6.151004 TGATTGAACGACGTCTGTGTTTATA 58.849 36.000 14.70 1.40 0.00 0.98
286 287 4.986034 TGATTGAACGACGTCTGTGTTTAT 59.014 37.500 14.70 8.17 0.00 1.40
287 288 4.361420 TGATTGAACGACGTCTGTGTTTA 58.639 39.130 14.70 4.67 0.00 2.01
288 289 3.191669 TGATTGAACGACGTCTGTGTTT 58.808 40.909 14.70 0.00 0.00 2.83
289 290 2.816689 TGATTGAACGACGTCTGTGTT 58.183 42.857 14.70 10.45 0.00 3.32
290 291 2.502213 TGATTGAACGACGTCTGTGT 57.498 45.000 14.70 0.87 0.00 3.72
291 292 3.852471 TTTGATTGAACGACGTCTGTG 57.148 42.857 14.70 0.15 0.00 3.66
292 293 4.319477 CCAATTTGATTGAACGACGTCTGT 60.319 41.667 14.70 10.46 42.83 3.41
293 294 4.084066 TCCAATTTGATTGAACGACGTCTG 60.084 41.667 14.70 9.79 42.83 3.51
294 295 4.062293 TCCAATTTGATTGAACGACGTCT 58.938 39.130 14.70 0.00 42.83 4.18
295 296 4.148891 GTCCAATTTGATTGAACGACGTC 58.851 43.478 5.18 5.18 42.83 4.34
296 297 3.562141 TGTCCAATTTGATTGAACGACGT 59.438 39.130 0.00 0.00 42.83 4.34
297 298 4.084066 TCTGTCCAATTTGATTGAACGACG 60.084 41.667 0.00 0.00 42.83 5.12
298 299 5.356882 TCTGTCCAATTTGATTGAACGAC 57.643 39.130 0.00 2.88 42.83 4.34
299 300 6.573664 ATTCTGTCCAATTTGATTGAACGA 57.426 33.333 0.00 0.00 42.83 3.85
300 301 6.862608 TGAATTCTGTCCAATTTGATTGAACG 59.137 34.615 7.05 0.00 42.83 3.95
301 302 8.592105 TTGAATTCTGTCCAATTTGATTGAAC 57.408 30.769 7.05 0.00 42.83 3.18
302 303 9.610705 TTTTGAATTCTGTCCAATTTGATTGAA 57.389 25.926 7.05 0.00 42.83 2.69
303 304 9.610705 TTTTTGAATTCTGTCCAATTTGATTGA 57.389 25.926 7.05 0.00 42.83 2.57
304 305 9.872757 CTTTTTGAATTCTGTCCAATTTGATTG 57.127 29.630 7.05 0.00 39.94 2.67
305 306 9.617523 ACTTTTTGAATTCTGTCCAATTTGATT 57.382 25.926 7.05 0.00 0.00 2.57
312 313 9.528018 GTGATTTACTTTTTGAATTCTGTCCAA 57.472 29.630 7.05 0.00 0.00 3.53
313 314 8.141268 GGTGATTTACTTTTTGAATTCTGTCCA 58.859 33.333 7.05 0.00 0.00 4.02
314 315 8.141268 TGGTGATTTACTTTTTGAATTCTGTCC 58.859 33.333 7.05 0.00 0.00 4.02
315 316 9.185192 CTGGTGATTTACTTTTTGAATTCTGTC 57.815 33.333 7.05 0.00 0.00 3.51
316 317 8.912988 TCTGGTGATTTACTTTTTGAATTCTGT 58.087 29.630 7.05 1.24 0.00 3.41
317 318 9.748708 TTCTGGTGATTTACTTTTTGAATTCTG 57.251 29.630 7.05 0.00 0.00 3.02
318 319 9.971922 CTTCTGGTGATTTACTTTTTGAATTCT 57.028 29.630 7.05 0.00 0.00 2.40
319 320 8.703336 GCTTCTGGTGATTTACTTTTTGAATTC 58.297 33.333 0.00 0.00 0.00 2.17
320 321 8.424133 AGCTTCTGGTGATTTACTTTTTGAATT 58.576 29.630 0.00 0.00 0.00 2.17
321 322 7.869429 CAGCTTCTGGTGATTTACTTTTTGAAT 59.131 33.333 0.00 0.00 43.76 2.57
322 323 7.147915 ACAGCTTCTGGTGATTTACTTTTTGAA 60.148 33.333 2.17 0.00 43.76 2.69
323 324 6.321181 ACAGCTTCTGGTGATTTACTTTTTGA 59.679 34.615 2.17 0.00 43.76 2.69
324 325 6.507023 ACAGCTTCTGGTGATTTACTTTTTG 58.493 36.000 2.17 0.00 43.76 2.44
325 326 6.715347 ACAGCTTCTGGTGATTTACTTTTT 57.285 33.333 2.17 0.00 43.76 1.94
326 327 6.715347 AACAGCTTCTGGTGATTTACTTTT 57.285 33.333 2.17 0.00 43.76 2.27
327 328 6.321181 TGAAACAGCTTCTGGTGATTTACTTT 59.679 34.615 2.17 0.00 43.76 2.66
328 329 5.827797 TGAAACAGCTTCTGGTGATTTACTT 59.172 36.000 2.17 0.00 43.76 2.24
329 330 5.376625 TGAAACAGCTTCTGGTGATTTACT 58.623 37.500 2.17 0.00 43.76 2.24
330 331 5.689383 TGAAACAGCTTCTGGTGATTTAC 57.311 39.130 2.17 0.00 43.76 2.01
331 332 5.183713 CCATGAAACAGCTTCTGGTGATTTA 59.816 40.000 0.00 0.00 43.76 1.40
332 333 4.021719 CCATGAAACAGCTTCTGGTGATTT 60.022 41.667 0.00 0.26 43.76 2.17
333 334 3.508793 CCATGAAACAGCTTCTGGTGATT 59.491 43.478 0.00 0.00 43.76 2.57
334 335 3.087031 CCATGAAACAGCTTCTGGTGAT 58.913 45.455 0.00 0.00 43.76 3.06
335 336 2.507484 CCATGAAACAGCTTCTGGTGA 58.493 47.619 0.00 0.00 43.76 4.02
336 337 1.542915 CCCATGAAACAGCTTCTGGTG 59.457 52.381 0.00 0.00 46.18 4.17
337 338 1.915141 CCCATGAAACAGCTTCTGGT 58.085 50.000 0.00 0.00 35.51 4.00
338 339 0.529378 GCCCATGAAACAGCTTCTGG 59.471 55.000 0.00 0.00 35.51 3.86
339 340 0.529378 GGCCCATGAAACAGCTTCTG 59.471 55.000 0.00 0.00 37.52 3.02
345 346 0.682209 CTCCTGGGCCCATGAAACAG 60.682 60.000 28.82 12.35 0.00 3.16
376 377 1.341080 CCAGCCAAATGTGGGAAACT 58.659 50.000 3.47 0.00 46.09 2.66
377 378 0.320683 GCCAGCCAAATGTGGGAAAC 60.321 55.000 3.47 0.00 46.09 2.78
378 379 1.479368 GGCCAGCCAAATGTGGGAAA 61.479 55.000 3.47 0.00 46.09 3.13
379 380 1.912763 GGCCAGCCAAATGTGGGAA 60.913 57.895 3.47 0.00 46.09 3.97
380 381 2.283821 GGCCAGCCAAATGTGGGA 60.284 61.111 3.47 0.00 46.09 4.37
381 382 3.393106 GGGCCAGCCAAATGTGGG 61.393 66.667 11.50 0.00 46.09 4.61
383 384 1.193323 TATTGGGCCAGCCAAATGTG 58.807 50.000 19.68 0.00 39.87 3.21
393 394 2.435805 GTGAGAGTGAGATATTGGGCCA 59.564 50.000 0.00 0.00 0.00 5.36
394 395 2.224402 GGTGAGAGTGAGATATTGGGCC 60.224 54.545 0.00 0.00 0.00 5.80
395 396 2.435805 TGGTGAGAGTGAGATATTGGGC 59.564 50.000 0.00 0.00 0.00 5.36
396 397 3.708631 ACTGGTGAGAGTGAGATATTGGG 59.291 47.826 0.00 0.00 0.00 4.12
398 399 5.347342 GTGACTGGTGAGAGTGAGATATTG 58.653 45.833 0.00 0.00 0.00 1.90
399 400 4.404073 GGTGACTGGTGAGAGTGAGATATT 59.596 45.833 0.00 0.00 0.00 1.28
400 401 3.957497 GGTGACTGGTGAGAGTGAGATAT 59.043 47.826 0.00 0.00 0.00 1.63
401 402 3.245264 TGGTGACTGGTGAGAGTGAGATA 60.245 47.826 0.00 0.00 0.00 1.98
402 403 2.175202 GGTGACTGGTGAGAGTGAGAT 58.825 52.381 0.00 0.00 0.00 2.75
403 404 1.133482 TGGTGACTGGTGAGAGTGAGA 60.133 52.381 0.00 0.00 0.00 3.27
409 410 0.398522 AGTGGTGGTGACTGGTGAGA 60.399 55.000 0.00 0.00 0.00 3.27
410 411 0.034059 GAGTGGTGGTGACTGGTGAG 59.966 60.000 0.00 0.00 0.00 3.51
411 412 1.407656 GGAGTGGTGGTGACTGGTGA 61.408 60.000 0.00 0.00 0.00 4.02
417 418 0.693049 AATGGAGGAGTGGTGGTGAC 59.307 55.000 0.00 0.00 0.00 3.67
422 423 1.207488 TGGGGAATGGAGGAGTGGTG 61.207 60.000 0.00 0.00 0.00 4.17
423 424 1.163309 TGGGGAATGGAGGAGTGGT 59.837 57.895 0.00 0.00 0.00 4.16
546 556 2.227865 GGATGTCGCTCCTAGAGATGAC 59.772 54.545 9.28 9.28 37.22 3.06
1268 1286 3.839432 GGACGGGGCTTCTCTCGG 61.839 72.222 0.00 0.00 0.00 4.63
1272 1290 2.683933 TCCAGGACGGGGCTTCTC 60.684 66.667 0.00 0.00 34.36 2.87
1488 2793 1.378531 GTGCACGGCCAATCTTGATA 58.621 50.000 2.24 0.00 0.00 2.15
1539 2844 2.280079 CCCAATTCCTGCCCTCCC 59.720 66.667 0.00 0.00 0.00 4.30
1564 2869 1.796617 GCATACCACTACGACGGTGTC 60.797 57.143 0.00 0.00 36.69 3.67
1765 3222 0.545646 GGAAGCATCTGAGGAAGCCT 59.454 55.000 0.00 0.00 36.92 4.58
1796 3253 1.064060 GTTTACATGGACATGGAGCGC 59.936 52.381 15.94 0.00 42.91 5.92
1816 3273 8.857216 CACGTGTATCTAGTTAAGTTAACCAAG 58.143 37.037 19.81 17.15 39.47 3.61
1863 3434 6.102663 GCTAGATATACCATTGCCACTAGTG 58.897 44.000 16.34 16.34 0.00 2.74
1911 3486 4.434545 AATCATAGCTCTGACCATGCTT 57.565 40.909 3.60 0.00 38.15 3.91
1973 3597 5.652324 AGTAATATGGAACGGAGGGAGTAT 58.348 41.667 0.00 0.00 0.00 2.12
1976 3600 4.101119 ACAAGTAATATGGAACGGAGGGAG 59.899 45.833 0.00 0.00 0.00 4.30
1977 3601 4.035112 ACAAGTAATATGGAACGGAGGGA 58.965 43.478 0.00 0.00 0.00 4.20
1978 3602 4.377897 GACAAGTAATATGGAACGGAGGG 58.622 47.826 0.00 0.00 0.00 4.30
1979 3603 4.049186 CGACAAGTAATATGGAACGGAGG 58.951 47.826 0.00 0.00 0.00 4.30
1980 3604 4.679662 ACGACAAGTAATATGGAACGGAG 58.320 43.478 0.00 0.00 0.00 4.63
1981 3605 4.724074 ACGACAAGTAATATGGAACGGA 57.276 40.909 0.00 0.00 0.00 4.69
1982 3606 4.628333 ACAACGACAAGTAATATGGAACGG 59.372 41.667 0.00 0.00 0.00 4.44
1983 3607 5.773239 ACAACGACAAGTAATATGGAACG 57.227 39.130 0.00 0.00 0.00 3.95
1984 3608 7.823149 AGTACAACGACAAGTAATATGGAAC 57.177 36.000 0.00 0.00 0.00 3.62
1985 3609 9.926158 TTTAGTACAACGACAAGTAATATGGAA 57.074 29.630 0.00 0.00 0.00 3.53
1991 3615 8.922676 CACTGATTTAGTACAACGACAAGTAAT 58.077 33.333 0.00 0.00 37.60 1.89
1992 3616 8.136800 TCACTGATTTAGTACAACGACAAGTAA 58.863 33.333 0.00 0.00 37.60 2.24
1993 3617 7.592533 GTCACTGATTTAGTACAACGACAAGTA 59.407 37.037 0.00 0.00 37.60 2.24
1994 3618 6.420008 GTCACTGATTTAGTACAACGACAAGT 59.580 38.462 0.00 0.00 37.60 3.16
1995 3619 6.398621 CGTCACTGATTTAGTACAACGACAAG 60.399 42.308 0.00 0.00 39.43 3.16
1996 3620 5.400188 CGTCACTGATTTAGTACAACGACAA 59.600 40.000 0.00 0.00 39.43 3.18
1997 3621 4.913345 CGTCACTGATTTAGTACAACGACA 59.087 41.667 0.00 0.00 39.43 4.35
1998 3622 5.149273 TCGTCACTGATTTAGTACAACGAC 58.851 41.667 0.00 0.00 40.23 4.34
1999 3623 5.049198 ACTCGTCACTGATTTAGTACAACGA 60.049 40.000 0.00 10.46 41.54 3.85
2000 3624 5.152097 ACTCGTCACTGATTTAGTACAACG 58.848 41.667 0.00 0.00 37.60 4.10
2001 3625 8.684973 ATTACTCGTCACTGATTTAGTACAAC 57.315 34.615 0.00 0.00 37.60 3.32
2003 3627 9.946165 CATATTACTCGTCACTGATTTAGTACA 57.054 33.333 0.00 0.00 37.60 2.90
2004 3628 9.395707 CCATATTACTCGTCACTGATTTAGTAC 57.604 37.037 0.00 0.00 37.60 2.73
2005 3629 9.346005 TCCATATTACTCGTCACTGATTTAGTA 57.654 33.333 0.00 0.00 37.60 1.82
2006 3630 8.234136 TCCATATTACTCGTCACTGATTTAGT 57.766 34.615 0.00 0.00 41.36 2.24
2007 3631 8.969267 GTTCCATATTACTCGTCACTGATTTAG 58.031 37.037 0.00 0.00 0.00 1.85
2008 3632 7.646526 CGTTCCATATTACTCGTCACTGATTTA 59.353 37.037 0.00 0.00 0.00 1.40
2009 3633 6.475727 CGTTCCATATTACTCGTCACTGATTT 59.524 38.462 0.00 0.00 0.00 2.17
2010 3634 5.977725 CGTTCCATATTACTCGTCACTGATT 59.022 40.000 0.00 0.00 0.00 2.57
2011 3635 5.507482 CCGTTCCATATTACTCGTCACTGAT 60.507 44.000 0.00 0.00 0.00 2.90
2012 3636 4.201980 CCGTTCCATATTACTCGTCACTGA 60.202 45.833 0.00 0.00 0.00 3.41
2013 3637 4.042398 CCGTTCCATATTACTCGTCACTG 58.958 47.826 0.00 0.00 0.00 3.66
2014 3638 3.949754 TCCGTTCCATATTACTCGTCACT 59.050 43.478 0.00 0.00 0.00 3.41
2015 3639 4.288531 CTCCGTTCCATATTACTCGTCAC 58.711 47.826 0.00 0.00 0.00 3.67
2016 3640 3.317149 CCTCCGTTCCATATTACTCGTCA 59.683 47.826 0.00 0.00 0.00 4.35
2017 3641 3.305199 CCCTCCGTTCCATATTACTCGTC 60.305 52.174 0.00 0.00 0.00 4.20
2018 3642 2.626743 CCCTCCGTTCCATATTACTCGT 59.373 50.000 0.00 0.00 0.00 4.18
2019 3643 2.889045 TCCCTCCGTTCCATATTACTCG 59.111 50.000 0.00 0.00 0.00 4.18
2020 3644 3.896272 ACTCCCTCCGTTCCATATTACTC 59.104 47.826 0.00 0.00 0.00 2.59
2021 3645 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
2022 3646 5.245526 ACATACTCCCTCCGTTCCATATTAC 59.754 44.000 0.00 0.00 0.00 1.89
2023 3647 5.399991 ACATACTCCCTCCGTTCCATATTA 58.600 41.667 0.00 0.00 0.00 0.98
2024 3648 4.232091 ACATACTCCCTCCGTTCCATATT 58.768 43.478 0.00 0.00 0.00 1.28
2025 3649 3.858135 ACATACTCCCTCCGTTCCATAT 58.142 45.455 0.00 0.00 0.00 1.78
2026 3650 3.323774 ACATACTCCCTCCGTTCCATA 57.676 47.619 0.00 0.00 0.00 2.74
2027 3651 2.176247 ACATACTCCCTCCGTTCCAT 57.824 50.000 0.00 0.00 0.00 3.41
2028 3652 2.024655 ACTACATACTCCCTCCGTTCCA 60.025 50.000 0.00 0.00 0.00 3.53
2029 3653 2.664015 ACTACATACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
2030 3654 5.301298 ACATAACTACATACTCCCTCCGTTC 59.699 44.000 0.00 0.00 0.00 3.95
2031 3655 5.068723 CACATAACTACATACTCCCTCCGTT 59.931 44.000 0.00 0.00 0.00 4.44
2032 3656 4.583489 CACATAACTACATACTCCCTCCGT 59.417 45.833 0.00 0.00 0.00 4.69
2033 3657 4.558898 GCACATAACTACATACTCCCTCCG 60.559 50.000 0.00 0.00 0.00 4.63
2034 3658 4.589374 AGCACATAACTACATACTCCCTCC 59.411 45.833 0.00 0.00 0.00 4.30
2035 3659 5.302059 TGAGCACATAACTACATACTCCCTC 59.698 44.000 0.00 0.00 0.00 4.30
2036 3660 5.208890 TGAGCACATAACTACATACTCCCT 58.791 41.667 0.00 0.00 0.00 4.20
2037 3661 5.531122 TGAGCACATAACTACATACTCCC 57.469 43.478 0.00 0.00 0.00 4.30
2074 3698 8.510243 TCAGTGCTTACATAATTTGATGTGAT 57.490 30.769 4.42 0.00 40.31 3.06
2076 3700 9.016623 CAATCAGTGCTTACATAATTTGATGTG 57.983 33.333 4.42 0.00 40.31 3.21
2121 3758 3.640498 CAGTGGGCTCTTCAGATATGAGA 59.360 47.826 0.00 0.00 32.34 3.27
2294 3939 2.747022 CCACCACGACCACCATCA 59.253 61.111 0.00 0.00 0.00 3.07
2331 3976 1.133699 GCATTCAGACCATCATCCCCA 60.134 52.381 0.00 0.00 0.00 4.96
2344 3989 0.172803 GGCTTCAGCTTGGCATTCAG 59.827 55.000 0.00 0.00 41.70 3.02
2480 4125 1.850345 ACTGGAGGTCAAAAGGGTCAA 59.150 47.619 0.00 0.00 0.00 3.18
2658 4321 0.606401 ATCTGTTGCGTCCACCCTTG 60.606 55.000 0.00 0.00 0.00 3.61
2659 4322 0.321653 GATCTGTTGCGTCCACCCTT 60.322 55.000 0.00 0.00 0.00 3.95
2660 4323 1.296715 GATCTGTTGCGTCCACCCT 59.703 57.895 0.00 0.00 0.00 4.34
3206 4870 1.070758 GGCCTCGATCATCTTAGCCAA 59.929 52.381 0.00 0.00 38.79 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.