Multiple sequence alignment - TraesCS3B01G500200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G500200 chr3B 100.000 3940 0 0 1 3940 744547715 744543776 0.000000e+00 7276.0
1 TraesCS3B01G500200 chr3B 93.550 2682 103 18 848 3491 747093565 747096214 0.000000e+00 3930.0
2 TraesCS3B01G500200 chr3B 87.871 1113 114 7 959 2050 747384338 747385450 0.000000e+00 1288.0
3 TraesCS3B01G500200 chr3B 84.015 1345 175 22 973 2277 744847121 744848465 0.000000e+00 1256.0
4 TraesCS3B01G500200 chr3B 83.941 1345 176 22 973 2277 744728548 744729892 0.000000e+00 1251.0
5 TraesCS3B01G500200 chr3B 84.665 1252 154 23 1039 2277 745540165 745541391 0.000000e+00 1214.0
6 TraesCS3B01G500200 chr3B 83.187 1368 187 31 928 2266 745203470 745202117 0.000000e+00 1212.0
7 TraesCS3B01G500200 chr3B 87.097 1085 119 7 987 2050 744512927 744511843 0.000000e+00 1208.0
8 TraesCS3B01G500200 chr3B 82.555 1307 203 18 985 2277 746856388 746855093 0.000000e+00 1127.0
9 TraesCS3B01G500200 chr3B 82.407 1313 206 18 979 2277 744590564 744591865 0.000000e+00 1122.0
10 TraesCS3B01G500200 chr3B 83.618 1111 154 19 985 2080 744419877 744418780 0.000000e+00 1018.0
11 TraesCS3B01G500200 chr3B 82.715 1186 153 36 1126 2283 744340647 744339486 0.000000e+00 1007.0
12 TraesCS3B01G500200 chr3B 90.060 664 62 4 1 663 235825924 235825264 0.000000e+00 857.0
13 TraesCS3B01G500200 chr3B 86.071 560 56 15 2490 3047 744511351 744510812 2.040000e-162 582.0
14 TraesCS3B01G500200 chr3B 95.775 355 14 1 3484 3838 747096275 747096628 4.420000e-159 571.0
15 TraesCS3B01G500200 chr3B 83.687 613 64 16 2490 3086 747385859 747386451 2.680000e-151 545.0
16 TraesCS3B01G500200 chr3B 83.072 573 84 11 2516 3082 745441609 745442174 3.510000e-140 508.0
17 TraesCS3B01G500200 chr3B 82.477 331 37 13 1968 2277 746286036 746286366 1.800000e-68 270.0
18 TraesCS3B01G500200 chr3B 91.150 113 10 0 1938 2050 747331386 747331498 1.900000e-33 154.0
19 TraesCS3B01G500200 chr3B 89.908 109 11 0 1939 2047 745547587 745547695 1.480000e-29 141.0
20 TraesCS3B01G500200 chr3B 97.778 45 1 0 808 852 747082129 747082173 1.170000e-10 78.7
21 TraesCS3B01G500200 chr3B 94.872 39 2 0 2278 2316 745202089 745202051 1.180000e-05 62.1
22 TraesCS3B01G500200 chr3A 91.875 1403 95 8 930 2323 629056429 629057821 0.000000e+00 1941.0
23 TraesCS3B01G500200 chr3A 84.829 1259 151 23 1039 2277 696637258 696638496 0.000000e+00 1230.0
24 TraesCS3B01G500200 chr3A 93.782 579 25 7 2437 3004 629057871 629058449 0.000000e+00 859.0
25 TraesCS3B01G500200 chr3A 84.794 559 65 14 2490 3047 696343363 696342824 9.630000e-151 544.0
26 TraesCS3B01G500200 chr3A 88.889 189 11 3 3092 3270 629059792 629059980 1.420000e-54 224.0
27 TraesCS3B01G500200 chr3A 91.772 158 11 2 3561 3718 629060504 629060659 6.630000e-53 219.0
28 TraesCS3B01G500200 chr3A 82.533 229 19 9 3267 3491 629060064 629060275 8.700000e-42 182.0
29 TraesCS3B01G500200 chr3A 89.744 117 11 1 1938 2053 696343898 696343782 8.820000e-32 148.0
30 TraesCS3B01G500200 chr3A 97.727 44 1 0 3025 3068 629058451 629058494 4.220000e-10 76.8
31 TraesCS3B01G500200 chr3D 89.565 1562 78 20 1622 3121 560286133 560284595 0.000000e+00 1903.0
32 TraesCS3B01G500200 chr3D 84.794 1335 158 25 985 2277 560551558 560552889 0.000000e+00 1299.0
33 TraesCS3B01G500200 chr3D 85.203 1257 158 20 1039 2277 560826916 560828162 0.000000e+00 1266.0
34 TraesCS3B01G500200 chr3D 89.906 961 95 2 946 1905 560269649 560268690 0.000000e+00 1236.0
35 TraesCS3B01G500200 chr3D 83.521 710 70 18 2500 3183 560268068 560267380 1.560000e-173 619.0
36 TraesCS3B01G500200 chr3D 82.373 573 87 11 2516 3082 560754033 560754597 1.650000e-133 486.0
37 TraesCS3B01G500200 chr3D 92.893 197 12 1 3297 3491 560284380 560284184 6.440000e-73 285.0
38 TraesCS3B01G500200 chr3D 94.022 184 10 1 3484 3667 560284123 560283941 1.080000e-70 278.0
39 TraesCS3B01G500200 chr3D 91.150 113 10 0 1938 2050 560268621 560268509 1.900000e-33 154.0
40 TraesCS3B01G500200 chr3D 86.325 117 6 1 3167 3273 560284595 560284479 6.920000e-23 119.0
41 TraesCS3B01G500200 chr5A 97.397 653 16 1 1 653 598247838 598247187 0.000000e+00 1110.0
42 TraesCS3B01G500200 chr5A 91.884 653 51 2 1 653 37929702 37929052 0.000000e+00 911.0
43 TraesCS3B01G500200 chr5A 90.687 655 57 3 1 654 589358269 589357618 0.000000e+00 869.0
44 TraesCS3B01G500200 chr6D 93.405 652 41 2 1 652 54376876 54377525 0.000000e+00 965.0
45 TraesCS3B01G500200 chr4B 92.462 650 38 6 3 652 1756406 1757044 0.000000e+00 918.0
46 TraesCS3B01G500200 chr4B 90.214 654 45 4 1 653 14030891 14030256 0.000000e+00 835.0
47 TraesCS3B01G500200 chr6B 91.730 653 40 7 1 652 281825538 281826177 0.000000e+00 894.0
48 TraesCS3B01G500200 chr2D 90.199 653 54 7 3 653 648879084 648879728 0.000000e+00 843.0
49 TraesCS3B01G500200 chr2B 90.909 253 21 2 402 653 765079219 765078968 4.880000e-89 339.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G500200 chr3B 744543776 744547715 3939 True 7276.000000 7276 100.000000 1 3940 1 chr3B.!!$R4 3939
1 TraesCS3B01G500200 chr3B 747093565 747096628 3063 False 2250.500000 3930 94.662500 848 3838 2 chr3B.!!$F10 2990
2 TraesCS3B01G500200 chr3B 744847121 744848465 1344 False 1256.000000 1256 84.015000 973 2277 1 chr3B.!!$F3 1304
3 TraesCS3B01G500200 chr3B 744728548 744729892 1344 False 1251.000000 1251 83.941000 973 2277 1 chr3B.!!$F2 1304
4 TraesCS3B01G500200 chr3B 745540165 745541391 1226 False 1214.000000 1214 84.665000 1039 2277 1 chr3B.!!$F5 1238
5 TraesCS3B01G500200 chr3B 746855093 746856388 1295 True 1127.000000 1127 82.555000 985 2277 1 chr3B.!!$R5 1292
6 TraesCS3B01G500200 chr3B 744590564 744591865 1301 False 1122.000000 1122 82.407000 979 2277 1 chr3B.!!$F1 1298
7 TraesCS3B01G500200 chr3B 744418780 744419877 1097 True 1018.000000 1018 83.618000 985 2080 1 chr3B.!!$R3 1095
8 TraesCS3B01G500200 chr3B 744339486 744340647 1161 True 1007.000000 1007 82.715000 1126 2283 1 chr3B.!!$R2 1157
9 TraesCS3B01G500200 chr3B 747384338 747386451 2113 False 916.500000 1288 85.779000 959 3086 2 chr3B.!!$F11 2127
10 TraesCS3B01G500200 chr3B 744510812 744512927 2115 True 895.000000 1208 86.584000 987 3047 2 chr3B.!!$R6 2060
11 TraesCS3B01G500200 chr3B 235825264 235825924 660 True 857.000000 857 90.060000 1 663 1 chr3B.!!$R1 662
12 TraesCS3B01G500200 chr3B 745202051 745203470 1419 True 637.050000 1212 89.029500 928 2316 2 chr3B.!!$R7 1388
13 TraesCS3B01G500200 chr3B 745441609 745442174 565 False 508.000000 508 83.072000 2516 3082 1 chr3B.!!$F4 566
14 TraesCS3B01G500200 chr3A 696637258 696638496 1238 False 1230.000000 1230 84.829000 1039 2277 1 chr3A.!!$F1 1238
15 TraesCS3B01G500200 chr3A 629056429 629060659 4230 False 583.633333 1941 91.096333 930 3718 6 chr3A.!!$F2 2788
16 TraesCS3B01G500200 chr3A 696342824 696343898 1074 True 346.000000 544 87.269000 1938 3047 2 chr3A.!!$R1 1109
17 TraesCS3B01G500200 chr3D 560551558 560552889 1331 False 1299.000000 1299 84.794000 985 2277 1 chr3D.!!$F1 1292
18 TraesCS3B01G500200 chr3D 560826916 560828162 1246 False 1266.000000 1266 85.203000 1039 2277 1 chr3D.!!$F3 1238
19 TraesCS3B01G500200 chr3D 560267380 560269649 2269 True 669.666667 1236 88.192333 946 3183 3 chr3D.!!$R1 2237
20 TraesCS3B01G500200 chr3D 560283941 560286133 2192 True 646.250000 1903 90.701250 1622 3667 4 chr3D.!!$R2 2045
21 TraesCS3B01G500200 chr3D 560754033 560754597 564 False 486.000000 486 82.373000 2516 3082 1 chr3D.!!$F2 566
22 TraesCS3B01G500200 chr5A 598247187 598247838 651 True 1110.000000 1110 97.397000 1 653 1 chr5A.!!$R3 652
23 TraesCS3B01G500200 chr5A 37929052 37929702 650 True 911.000000 911 91.884000 1 653 1 chr5A.!!$R1 652
24 TraesCS3B01G500200 chr5A 589357618 589358269 651 True 869.000000 869 90.687000 1 654 1 chr5A.!!$R2 653
25 TraesCS3B01G500200 chr6D 54376876 54377525 649 False 965.000000 965 93.405000 1 652 1 chr6D.!!$F1 651
26 TraesCS3B01G500200 chr4B 1756406 1757044 638 False 918.000000 918 92.462000 3 652 1 chr4B.!!$F1 649
27 TraesCS3B01G500200 chr4B 14030256 14030891 635 True 835.000000 835 90.214000 1 653 1 chr4B.!!$R1 652
28 TraesCS3B01G500200 chr6B 281825538 281826177 639 False 894.000000 894 91.730000 1 652 1 chr6B.!!$F1 651
29 TraesCS3B01G500200 chr2D 648879084 648879728 644 False 843.000000 843 90.199000 3 653 1 chr2D.!!$F1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
560 561 0.030501 ATCAGTAATGGGGGTCCGGA 60.031 55.000 0.0 0.00 35.24 5.14 F
587 588 0.179108 CGGGGCGAGACCTTAGAAAG 60.179 60.000 0.0 0.00 39.10 2.62 F
648 649 0.314302 AAACGCACGAGCAGTCTACT 59.686 50.000 5.5 0.00 42.27 2.57 F
797 798 0.456312 GTTGTCGCTCCGGTACAGAG 60.456 60.000 0.0 7.59 0.00 3.35 F
805 806 1.212441 CTCCGGTACAGAGGGAGTACT 59.788 57.143 0.0 0.00 41.93 2.73 F
1780 1801 1.507174 GTCCTGGAGTTCCTCGTCG 59.493 63.158 0.0 0.00 36.82 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2121 0.981183 TGACGGTGTTGCTAATCCCT 59.019 50.000 0.00 0.00 0.00 4.20 R
2216 2619 1.012841 GGGAAGCATCTGAGAAAGCG 58.987 55.000 4.90 0.00 0.00 4.68 R
2268 2671 1.164411 TGCCAATGCAGAGTTAACCG 58.836 50.000 0.88 0.00 44.23 4.44 R
2557 3030 1.202806 CCTTGCCAGTGGACTCTTCAA 60.203 52.381 15.20 5.39 0.00 2.69 R
2762 3255 1.891933 TGGCCCTCACATTATCCTCA 58.108 50.000 0.00 0.00 0.00 3.86 R
3412 5420 0.820891 AACTTCCTGCCAGCACACAG 60.821 55.000 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 2.280389 CTCATCGGCGGTGGGATG 60.280 66.667 16.65 6.69 41.05 3.51
353 354 2.754658 GAAGCGGACGGAGAGGGA 60.755 66.667 0.00 0.00 0.00 4.20
354 355 3.066233 GAAGCGGACGGAGAGGGAC 62.066 68.421 0.00 0.00 0.00 4.46
376 377 1.148723 GGACGGATCGGAGAGGAGA 59.851 63.158 7.35 0.00 43.63 3.71
383 384 1.969200 ATCGGAGAGGAGACGGACGA 61.969 60.000 0.00 0.00 43.63 4.20
388 389 1.137825 GAGGAGACGGACGAAGCAG 59.862 63.158 0.00 0.00 0.00 4.24
497 498 2.470286 CGAAGTGAAGGCGAACGC 59.530 61.111 10.81 10.81 41.06 4.84
539 540 3.603671 GCGACCTAGGCGGGGTAG 61.604 72.222 21.70 6.13 37.17 3.18
540 541 2.194056 CGACCTAGGCGGGGTAGA 59.806 66.667 9.30 0.00 37.17 2.59
541 542 1.454479 CGACCTAGGCGGGGTAGAA 60.454 63.158 9.30 0.00 37.17 2.10
542 543 0.826672 CGACCTAGGCGGGGTAGAAT 60.827 60.000 9.30 0.00 37.17 2.40
543 544 0.967662 GACCTAGGCGGGGTAGAATC 59.032 60.000 9.30 0.00 37.17 2.52
544 545 0.263765 ACCTAGGCGGGGTAGAATCA 59.736 55.000 9.30 0.00 35.00 2.57
545 546 0.969894 CCTAGGCGGGGTAGAATCAG 59.030 60.000 0.00 0.00 0.00 2.90
546 547 1.705873 CTAGGCGGGGTAGAATCAGT 58.294 55.000 0.00 0.00 0.00 3.41
547 548 2.490351 CCTAGGCGGGGTAGAATCAGTA 60.490 54.545 0.00 0.00 0.00 2.74
548 549 2.170012 AGGCGGGGTAGAATCAGTAA 57.830 50.000 0.00 0.00 0.00 2.24
549 550 2.690840 AGGCGGGGTAGAATCAGTAAT 58.309 47.619 0.00 0.00 0.00 1.89
550 551 2.368875 AGGCGGGGTAGAATCAGTAATG 59.631 50.000 0.00 0.00 0.00 1.90
551 552 2.550208 GGCGGGGTAGAATCAGTAATGG 60.550 54.545 0.00 0.00 0.00 3.16
552 553 2.550208 GCGGGGTAGAATCAGTAATGGG 60.550 54.545 0.00 0.00 0.00 4.00
553 554 2.038557 CGGGGTAGAATCAGTAATGGGG 59.961 54.545 0.00 0.00 0.00 4.96
554 555 2.375509 GGGGTAGAATCAGTAATGGGGG 59.624 54.545 0.00 0.00 0.00 5.40
555 556 3.053826 GGGTAGAATCAGTAATGGGGGT 58.946 50.000 0.00 0.00 0.00 4.95
556 557 3.072622 GGGTAGAATCAGTAATGGGGGTC 59.927 52.174 0.00 0.00 0.00 4.46
557 558 3.072622 GGTAGAATCAGTAATGGGGGTCC 59.927 52.174 0.00 0.00 0.00 4.46
558 559 1.768870 AGAATCAGTAATGGGGGTCCG 59.231 52.381 0.00 0.00 35.24 4.79
559 560 0.843984 AATCAGTAATGGGGGTCCGG 59.156 55.000 0.00 0.00 35.24 5.14
560 561 0.030501 ATCAGTAATGGGGGTCCGGA 60.031 55.000 0.00 0.00 35.24 5.14
561 562 0.030501 TCAGTAATGGGGGTCCGGAT 60.031 55.000 7.81 0.00 35.24 4.18
562 563 0.396811 CAGTAATGGGGGTCCGGATC 59.603 60.000 7.81 6.88 35.24 3.36
563 564 0.267960 AGTAATGGGGGTCCGGATCT 59.732 55.000 15.87 0.00 35.24 2.75
564 565 1.506418 AGTAATGGGGGTCCGGATCTA 59.494 52.381 15.87 1.74 35.24 1.98
565 566 1.622312 GTAATGGGGGTCCGGATCTAC 59.378 57.143 15.87 8.46 35.24 2.59
566 567 1.119574 AATGGGGGTCCGGATCTACG 61.120 60.000 15.87 0.00 35.24 3.51
576 577 4.344474 GATCTACGGCGGGGCGAG 62.344 72.222 21.68 13.36 0.00 5.03
577 578 4.889112 ATCTACGGCGGGGCGAGA 62.889 66.667 21.68 17.66 0.00 4.04
583 584 4.222847 GGCGGGGCGAGACCTTAG 62.223 72.222 0.00 0.00 39.10 2.18
584 585 3.145551 GCGGGGCGAGACCTTAGA 61.146 66.667 0.00 0.00 39.10 2.10
585 586 2.718073 GCGGGGCGAGACCTTAGAA 61.718 63.158 0.00 0.00 39.10 2.10
586 587 1.895238 CGGGGCGAGACCTTAGAAA 59.105 57.895 0.00 0.00 39.10 2.52
587 588 0.179108 CGGGGCGAGACCTTAGAAAG 60.179 60.000 0.00 0.00 39.10 2.62
588 589 0.903236 GGGGCGAGACCTTAGAAAGT 59.097 55.000 0.00 0.00 39.10 2.66
589 590 1.278413 GGGGCGAGACCTTAGAAAGTT 59.722 52.381 0.00 0.00 39.10 2.66
590 591 2.498885 GGGGCGAGACCTTAGAAAGTTA 59.501 50.000 0.00 0.00 39.10 2.24
591 592 3.055602 GGGGCGAGACCTTAGAAAGTTAA 60.056 47.826 0.00 0.00 39.10 2.01
592 593 3.931468 GGGCGAGACCTTAGAAAGTTAAC 59.069 47.826 0.00 0.00 39.10 2.01
593 594 4.562143 GGGCGAGACCTTAGAAAGTTAACA 60.562 45.833 8.61 0.00 39.10 2.41
594 595 5.176592 GGCGAGACCTTAGAAAGTTAACAT 58.823 41.667 8.61 0.00 34.51 2.71
595 596 5.063564 GGCGAGACCTTAGAAAGTTAACATG 59.936 44.000 8.61 0.00 34.51 3.21
596 597 5.638234 GCGAGACCTTAGAAAGTTAACATGT 59.362 40.000 8.61 0.00 0.00 3.21
597 598 6.810182 GCGAGACCTTAGAAAGTTAACATGTA 59.190 38.462 8.61 0.00 0.00 2.29
598 599 7.330208 GCGAGACCTTAGAAAGTTAACATGTAA 59.670 37.037 8.61 4.86 0.00 2.41
599 600 8.645487 CGAGACCTTAGAAAGTTAACATGTAAC 58.355 37.037 8.61 4.52 0.00 2.50
600 601 9.708092 GAGACCTTAGAAAGTTAACATGTAACT 57.292 33.333 8.61 6.82 39.24 2.24
601 602 9.708092 AGACCTTAGAAAGTTAACATGTAACTC 57.292 33.333 16.13 8.90 36.82 3.01
602 603 9.708092 GACCTTAGAAAGTTAACATGTAACTCT 57.292 33.333 16.13 13.44 36.82 3.24
605 606 9.813080 CTTAGAAAGTTAACATGTAACTCTTGC 57.187 33.333 16.13 10.24 36.82 4.01
606 607 7.801716 AGAAAGTTAACATGTAACTCTTGCA 57.198 32.000 16.13 0.00 36.82 4.08
607 608 8.220755 AGAAAGTTAACATGTAACTCTTGCAA 57.779 30.769 16.13 0.00 36.82 4.08
608 609 8.682710 AGAAAGTTAACATGTAACTCTTGCAAA 58.317 29.630 16.13 0.00 36.82 3.68
609 610 8.628882 AAAGTTAACATGTAACTCTTGCAAAC 57.371 30.769 16.13 0.00 36.82 2.93
610 611 7.568199 AGTTAACATGTAACTCTTGCAAACT 57.432 32.000 8.61 0.00 32.82 2.66
611 612 8.671384 AGTTAACATGTAACTCTTGCAAACTA 57.329 30.769 8.61 0.00 32.82 2.24
612 613 9.284968 AGTTAACATGTAACTCTTGCAAACTAT 57.715 29.630 8.61 0.00 32.82 2.12
613 614 9.893305 GTTAACATGTAACTCTTGCAAACTATT 57.107 29.630 0.00 0.00 0.00 1.73
616 617 8.165239 ACATGTAACTCTTGCAAACTATTTCA 57.835 30.769 0.00 0.00 0.00 2.69
617 618 8.292448 ACATGTAACTCTTGCAAACTATTTCAG 58.708 33.333 0.00 0.00 0.00 3.02
618 619 7.202016 TGTAACTCTTGCAAACTATTTCAGG 57.798 36.000 0.00 0.00 0.00 3.86
619 620 6.995686 TGTAACTCTTGCAAACTATTTCAGGA 59.004 34.615 0.00 0.00 0.00 3.86
620 621 6.566197 AACTCTTGCAAACTATTTCAGGAG 57.434 37.500 0.00 2.03 38.24 3.69
621 622 4.457257 ACTCTTGCAAACTATTTCAGGAGC 59.543 41.667 0.00 0.00 36.50 4.70
622 623 3.758554 TCTTGCAAACTATTTCAGGAGCC 59.241 43.478 0.00 0.00 0.00 4.70
623 624 2.446435 TGCAAACTATTTCAGGAGCCC 58.554 47.619 0.00 0.00 0.00 5.19
624 625 1.401905 GCAAACTATTTCAGGAGCCCG 59.598 52.381 0.00 0.00 0.00 6.13
625 626 2.711542 CAAACTATTTCAGGAGCCCGT 58.288 47.619 0.00 0.00 0.00 5.28
626 627 2.403252 AACTATTTCAGGAGCCCGTG 57.597 50.000 0.00 0.00 0.00 4.94
627 628 0.541863 ACTATTTCAGGAGCCCGTGG 59.458 55.000 0.00 0.00 0.00 4.94
641 642 3.947841 GTGGCAAACGCACGAGCA 61.948 61.111 5.50 0.00 42.27 4.26
642 643 3.648982 TGGCAAACGCACGAGCAG 61.649 61.111 5.50 0.37 42.27 4.24
643 644 3.649986 GGCAAACGCACGAGCAGT 61.650 61.111 5.50 1.04 42.27 4.40
644 645 2.127609 GCAAACGCACGAGCAGTC 60.128 61.111 5.50 0.00 42.27 3.51
645 646 2.598632 GCAAACGCACGAGCAGTCT 61.599 57.895 5.50 0.00 42.27 3.24
646 647 1.282248 GCAAACGCACGAGCAGTCTA 61.282 55.000 5.50 0.00 42.27 2.59
647 648 0.435008 CAAACGCACGAGCAGTCTAC 59.565 55.000 5.50 0.00 42.27 2.59
648 649 0.314302 AAACGCACGAGCAGTCTACT 59.686 50.000 5.50 0.00 42.27 2.57
649 650 1.162698 AACGCACGAGCAGTCTACTA 58.837 50.000 5.50 0.00 42.27 1.82
650 651 0.727970 ACGCACGAGCAGTCTACTAG 59.272 55.000 5.50 0.00 42.27 2.57
651 652 0.727970 CGCACGAGCAGTCTACTAGT 59.272 55.000 5.50 0.00 42.27 2.57
652 653 1.931841 CGCACGAGCAGTCTACTAGTA 59.068 52.381 5.50 1.89 42.27 1.82
653 654 2.544686 CGCACGAGCAGTCTACTAGTAT 59.455 50.000 2.33 0.00 42.27 2.12
654 655 3.739810 CGCACGAGCAGTCTACTAGTATA 59.260 47.826 2.33 0.00 42.27 1.47
655 656 4.376210 CGCACGAGCAGTCTACTAGTATAC 60.376 50.000 9.78 9.78 42.27 1.47
656 657 4.751098 GCACGAGCAGTCTACTAGTATACT 59.249 45.833 13.65 13.65 41.58 2.12
657 658 5.925397 GCACGAGCAGTCTACTAGTATACTA 59.075 44.000 17.74 12.05 41.58 1.82
658 659 6.591062 GCACGAGCAGTCTACTAGTATACTAT 59.409 42.308 17.74 11.25 41.58 2.12
659 660 7.758980 GCACGAGCAGTCTACTAGTATACTATA 59.241 40.741 17.74 7.28 41.58 1.31
660 661 9.636879 CACGAGCAGTCTACTAGTATACTATAA 57.363 37.037 17.74 3.99 0.00 0.98
661 662 9.859427 ACGAGCAGTCTACTAGTATACTATAAG 57.141 37.037 17.74 12.63 0.00 1.73
688 689 7.597643 CGTTATTCAAGCAAACGTAGAAAAA 57.402 32.000 0.00 0.00 40.69 1.94
689 690 8.211198 CGTTATTCAAGCAAACGTAGAAAAAT 57.789 30.769 0.00 0.00 40.69 1.82
690 691 8.147172 CGTTATTCAAGCAAACGTAGAAAAATG 58.853 33.333 0.00 0.00 40.69 2.32
691 692 8.964150 GTTATTCAAGCAAACGTAGAAAAATGT 58.036 29.630 0.00 0.00 0.00 2.71
692 693 9.522804 TTATTCAAGCAAACGTAGAAAAATGTT 57.477 25.926 0.00 0.00 0.00 2.71
693 694 7.444558 TTCAAGCAAACGTAGAAAAATGTTC 57.555 32.000 0.00 0.00 0.00 3.18
694 695 6.791303 TCAAGCAAACGTAGAAAAATGTTCT 58.209 32.000 0.00 0.00 0.00 3.01
695 696 7.254852 TCAAGCAAACGTAGAAAAATGTTCTT 58.745 30.769 0.00 0.00 0.00 2.52
696 697 8.399425 TCAAGCAAACGTAGAAAAATGTTCTTA 58.601 29.630 0.00 0.00 0.00 2.10
697 698 9.180678 CAAGCAAACGTAGAAAAATGTTCTTAT 57.819 29.630 0.00 0.00 0.00 1.73
704 705 8.899771 ACGTAGAAAAATGTTCTTATATTGGGG 58.100 33.333 0.00 0.00 0.00 4.96
705 706 8.899771 CGTAGAAAAATGTTCTTATATTGGGGT 58.100 33.333 0.00 0.00 0.00 4.95
712 713 7.979444 ATGTTCTTATATTGGGGTATGAACG 57.021 36.000 0.00 0.00 37.59 3.95
713 714 7.127012 TGTTCTTATATTGGGGTATGAACGA 57.873 36.000 0.00 0.00 37.59 3.85
714 715 7.566569 TGTTCTTATATTGGGGTATGAACGAA 58.433 34.615 0.00 0.00 37.59 3.85
715 716 8.215050 TGTTCTTATATTGGGGTATGAACGAAT 58.785 33.333 0.00 0.00 37.59 3.34
716 717 9.715121 GTTCTTATATTGGGGTATGAACGAATA 57.285 33.333 0.00 0.00 30.48 1.75
720 721 5.705609 ATTGGGGTATGAACGAATATTGC 57.294 39.130 0.00 0.00 0.00 3.56
721 722 4.157849 TGGGGTATGAACGAATATTGCA 57.842 40.909 0.00 0.00 0.00 4.08
722 723 4.527944 TGGGGTATGAACGAATATTGCAA 58.472 39.130 0.00 0.00 0.00 4.08
723 724 4.950475 TGGGGTATGAACGAATATTGCAAA 59.050 37.500 1.71 0.00 0.00 3.68
724 725 5.596361 TGGGGTATGAACGAATATTGCAAAT 59.404 36.000 1.71 0.00 0.00 2.32
725 726 6.773200 TGGGGTATGAACGAATATTGCAAATA 59.227 34.615 1.71 0.00 0.00 1.40
726 727 7.450014 TGGGGTATGAACGAATATTGCAAATAT 59.550 33.333 1.71 0.00 0.00 1.28
727 728 8.952278 GGGGTATGAACGAATATTGCAAATATA 58.048 33.333 1.71 0.00 0.00 0.86
728 729 9.769093 GGGTATGAACGAATATTGCAAATATAC 57.231 33.333 1.71 3.15 0.00 1.47
732 733 8.902540 TGAACGAATATTGCAAATATACTCCT 57.097 30.769 1.71 0.00 0.00 3.69
733 734 9.990360 TGAACGAATATTGCAAATATACTCCTA 57.010 29.630 1.71 0.00 0.00 2.94
735 736 9.998106 AACGAATATTGCAAATATACTCCTACT 57.002 29.630 1.71 0.00 0.00 2.57
736 737 9.640963 ACGAATATTGCAAATATACTCCTACTC 57.359 33.333 1.71 0.00 0.00 2.59
737 738 9.088512 CGAATATTGCAAATATACTCCTACTCC 57.911 37.037 1.71 0.00 0.00 3.85
738 739 9.384764 GAATATTGCAAATATACTCCTACTCCC 57.615 37.037 1.71 0.00 0.00 4.30
739 740 5.562298 TTGCAAATATACTCCTACTCCCC 57.438 43.478 0.00 0.00 0.00 4.81
740 741 4.562767 TGCAAATATACTCCTACTCCCCA 58.437 43.478 0.00 0.00 0.00 4.96
741 742 5.162637 TGCAAATATACTCCTACTCCCCAT 58.837 41.667 0.00 0.00 0.00 4.00
742 743 6.327781 TGCAAATATACTCCTACTCCCCATA 58.672 40.000 0.00 0.00 0.00 2.74
743 744 6.790461 TGCAAATATACTCCTACTCCCCATAA 59.210 38.462 0.00 0.00 0.00 1.90
744 745 7.293771 TGCAAATATACTCCTACTCCCCATAAA 59.706 37.037 0.00 0.00 0.00 1.40
745 746 7.824779 GCAAATATACTCCTACTCCCCATAAAG 59.175 40.741 0.00 0.00 0.00 1.85
746 747 9.101325 CAAATATACTCCTACTCCCCATAAAGA 57.899 37.037 0.00 0.00 0.00 2.52
747 748 9.684702 AAATATACTCCTACTCCCCATAAAGAA 57.315 33.333 0.00 0.00 0.00 2.52
748 749 8.903059 ATATACTCCTACTCCCCATAAAGAAG 57.097 38.462 0.00 0.00 0.00 2.85
749 750 4.961585 ACTCCTACTCCCCATAAAGAAGT 58.038 43.478 0.00 0.00 0.00 3.01
750 751 4.717280 ACTCCTACTCCCCATAAAGAAGTG 59.283 45.833 0.00 0.00 0.00 3.16
751 752 4.695606 TCCTACTCCCCATAAAGAAGTGT 58.304 43.478 0.00 0.00 0.00 3.55
752 753 5.845734 TCCTACTCCCCATAAAGAAGTGTA 58.154 41.667 0.00 0.00 0.00 2.90
753 754 6.266080 TCCTACTCCCCATAAAGAAGTGTAA 58.734 40.000 0.00 0.00 0.00 2.41
754 755 6.383147 TCCTACTCCCCATAAAGAAGTGTAAG 59.617 42.308 0.00 0.00 0.00 2.34
755 756 6.383147 CCTACTCCCCATAAAGAAGTGTAAGA 59.617 42.308 0.00 0.00 0.00 2.10
756 757 6.301169 ACTCCCCATAAAGAAGTGTAAGAG 57.699 41.667 0.00 0.00 0.00 2.85
757 758 5.099042 TCCCCATAAAGAAGTGTAAGAGC 57.901 43.478 0.00 0.00 0.00 4.09
758 759 3.871594 CCCCATAAAGAAGTGTAAGAGCG 59.128 47.826 0.00 0.00 0.00 5.03
759 760 4.504858 CCCATAAAGAAGTGTAAGAGCGT 58.495 43.478 0.00 0.00 0.00 5.07
760 761 4.935808 CCCATAAAGAAGTGTAAGAGCGTT 59.064 41.667 0.00 0.00 0.00 4.84
761 762 5.411669 CCCATAAAGAAGTGTAAGAGCGTTT 59.588 40.000 0.00 0.00 0.00 3.60
762 763 6.592607 CCCATAAAGAAGTGTAAGAGCGTTTA 59.407 38.462 0.00 0.00 0.00 2.01
763 764 7.412672 CCCATAAAGAAGTGTAAGAGCGTTTAC 60.413 40.741 6.48 6.48 34.78 2.01
764 765 7.331193 CCATAAAGAAGTGTAAGAGCGTTTACT 59.669 37.037 12.52 1.97 35.16 2.24
765 766 9.350357 CATAAAGAAGTGTAAGAGCGTTTACTA 57.650 33.333 12.52 0.66 35.16 1.82
767 768 7.813852 AAGAAGTGTAAGAGCGTTTACTATG 57.186 36.000 12.52 0.00 35.16 2.23
768 769 6.921914 AGAAGTGTAAGAGCGTTTACTATGT 58.078 36.000 12.52 0.00 35.16 2.29
769 770 8.048534 AGAAGTGTAAGAGCGTTTACTATGTA 57.951 34.615 12.52 0.00 35.16 2.29
770 771 7.967303 AGAAGTGTAAGAGCGTTTACTATGTAC 59.033 37.037 12.52 0.00 35.16 2.90
771 772 6.558909 AGTGTAAGAGCGTTTACTATGTACC 58.441 40.000 12.52 0.00 35.16 3.34
772 773 5.453587 GTGTAAGAGCGTTTACTATGTACCG 59.546 44.000 12.52 0.00 35.16 4.02
773 774 4.970662 AAGAGCGTTTACTATGTACCGA 57.029 40.909 0.00 0.00 0.00 4.69
774 775 4.970662 AGAGCGTTTACTATGTACCGAA 57.029 40.909 0.00 0.00 0.00 4.30
775 776 5.314923 AGAGCGTTTACTATGTACCGAAA 57.685 39.130 0.00 0.00 0.00 3.46
776 777 5.899299 AGAGCGTTTACTATGTACCGAAAT 58.101 37.500 0.00 0.00 0.00 2.17
777 778 7.031226 AGAGCGTTTACTATGTACCGAAATA 57.969 36.000 0.00 0.00 0.00 1.40
778 779 7.137426 AGAGCGTTTACTATGTACCGAAATAG 58.863 38.462 0.00 0.00 33.42 1.73
779 780 6.799512 AGCGTTTACTATGTACCGAAATAGT 58.200 36.000 8.24 8.24 41.39 2.12
780 781 7.260603 AGCGTTTACTATGTACCGAAATAGTT 58.739 34.615 8.42 0.00 39.65 2.24
781 782 7.221452 AGCGTTTACTATGTACCGAAATAGTTG 59.779 37.037 8.42 1.01 39.65 3.16
782 783 7.009540 GCGTTTACTATGTACCGAAATAGTTGT 59.990 37.037 8.42 0.00 39.65 3.32
783 784 8.526681 CGTTTACTATGTACCGAAATAGTTGTC 58.473 37.037 8.42 1.50 39.65 3.18
784 785 8.526681 GTTTACTATGTACCGAAATAGTTGTCG 58.473 37.037 8.42 0.00 39.65 4.35
785 786 5.039333 ACTATGTACCGAAATAGTTGTCGC 58.961 41.667 0.00 0.00 36.43 5.19
786 787 3.581024 TGTACCGAAATAGTTGTCGCT 57.419 42.857 0.00 0.00 35.93 4.93
787 788 3.504863 TGTACCGAAATAGTTGTCGCTC 58.495 45.455 0.00 0.00 35.93 5.03
788 789 2.005971 ACCGAAATAGTTGTCGCTCC 57.994 50.000 0.00 0.00 35.93 4.70
789 790 0.921347 CCGAAATAGTTGTCGCTCCG 59.079 55.000 0.00 0.00 35.93 4.63
790 791 0.921347 CGAAATAGTTGTCGCTCCGG 59.079 55.000 0.00 0.00 0.00 5.14
791 792 1.734707 CGAAATAGTTGTCGCTCCGGT 60.735 52.381 0.00 0.00 0.00 5.28
792 793 2.478370 CGAAATAGTTGTCGCTCCGGTA 60.478 50.000 0.00 0.00 0.00 4.02
793 794 2.573941 AATAGTTGTCGCTCCGGTAC 57.426 50.000 0.00 0.00 0.00 3.34
794 795 1.466856 ATAGTTGTCGCTCCGGTACA 58.533 50.000 0.00 0.00 0.00 2.90
795 796 0.806868 TAGTTGTCGCTCCGGTACAG 59.193 55.000 0.00 0.00 0.00 2.74
796 797 0.892358 AGTTGTCGCTCCGGTACAGA 60.892 55.000 0.00 0.00 0.00 3.41
797 798 0.456312 GTTGTCGCTCCGGTACAGAG 60.456 60.000 0.00 7.59 0.00 3.35
798 799 1.592400 TTGTCGCTCCGGTACAGAGG 61.592 60.000 0.00 4.91 0.00 3.69
799 800 2.439701 TCGCTCCGGTACAGAGGG 60.440 66.667 17.92 17.92 43.62 4.30
800 801 2.439701 CGCTCCGGTACAGAGGGA 60.440 66.667 18.76 8.24 44.69 4.20
801 802 2.888464 TCGCTCCGGTACAGAGGGAG 62.888 65.000 20.93 17.48 45.27 4.30
804 805 1.677942 CTCCGGTACAGAGGGAGTAC 58.322 60.000 0.00 0.00 41.93 2.73
805 806 1.212441 CTCCGGTACAGAGGGAGTACT 59.788 57.143 0.00 0.00 41.93 2.73
806 807 2.437281 CTCCGGTACAGAGGGAGTACTA 59.563 54.545 0.00 0.00 41.93 1.82
807 808 3.051581 TCCGGTACAGAGGGAGTACTAT 58.948 50.000 0.00 0.00 41.16 2.12
808 809 4.234550 TCCGGTACAGAGGGAGTACTATA 58.765 47.826 0.00 0.00 41.16 1.31
809 810 4.040952 TCCGGTACAGAGGGAGTACTATAC 59.959 50.000 0.00 0.00 41.16 1.47
810 811 4.041444 CCGGTACAGAGGGAGTACTATACT 59.959 50.000 0.00 0.00 41.16 2.12
811 812 5.455899 CCGGTACAGAGGGAGTACTATACTT 60.456 48.000 0.00 0.00 41.16 2.24
812 813 5.469421 CGGTACAGAGGGAGTACTATACTTG 59.531 48.000 0.00 0.00 41.16 3.16
813 814 6.363882 GGTACAGAGGGAGTACTATACTTGT 58.636 44.000 0.00 1.30 41.16 3.16
814 815 6.832900 GGTACAGAGGGAGTACTATACTTGTT 59.167 42.308 0.00 0.00 41.16 2.83
815 816 7.995488 GGTACAGAGGGAGTACTATACTTGTTA 59.005 40.741 0.00 0.00 41.16 2.41
816 817 9.401058 GTACAGAGGGAGTACTATACTTGTTAA 57.599 37.037 0.00 0.00 39.59 2.01
818 819 9.490083 ACAGAGGGAGTACTATACTTGTTAATT 57.510 33.333 0.00 0.00 39.59 1.40
1566 1587 2.909965 GTCTTTGCCAACCGCCCA 60.910 61.111 0.00 0.00 36.24 5.36
1780 1801 1.507174 GTCCTGGAGTTCCTCGTCG 59.493 63.158 0.00 0.00 36.82 5.12
1863 1884 3.096092 GCTGGGATTTACCATGTTGGAA 58.904 45.455 0.00 0.00 40.96 3.53
1869 1890 6.126409 GGGATTTACCATGTTGGAAGACATA 58.874 40.000 0.00 0.00 40.96 2.29
1872 1893 7.721399 GGATTTACCATGTTGGAAGACATAGAT 59.279 37.037 0.00 0.00 40.96 1.98
2022 2121 2.468301 AGCCAGGAGATCAAGAGCTA 57.532 50.000 0.00 0.00 0.00 3.32
2216 2619 1.597742 TGCTGTCAAGAAAGTGCCTC 58.402 50.000 0.00 0.00 0.00 4.70
2268 2671 4.189231 ACGCTCCATGTCTATGTAAAACC 58.811 43.478 0.00 0.00 32.21 3.27
2391 2842 5.994250 ACTGATTGTGTATCTAGCATGGTT 58.006 37.500 1.12 0.00 34.17 3.67
2475 2936 9.442047 CTATCCTGAACTTGTTTGAGACTAAAT 57.558 33.333 0.00 0.00 0.00 1.40
2498 2971 7.687941 ATGCTTAGTTGTTGTTGCTTATAGT 57.312 32.000 0.00 0.00 0.00 2.12
2530 3003 6.886459 ACCTGAACTAATGTATGCACTGATTT 59.114 34.615 0.00 0.00 0.00 2.17
2557 3030 2.591715 GCAGTCCCGCCGCATATT 60.592 61.111 0.00 0.00 0.00 1.28
2635 3108 3.031964 GCGTGGTGCAGAGCATGAC 62.032 63.158 0.00 0.00 45.45 3.06
2762 3255 3.152341 CAGCAAATGTTTCTCCTCTGGT 58.848 45.455 0.00 0.00 0.00 4.00
3249 5146 3.274288 CATCTTTAAGTCTGGTGGGAGC 58.726 50.000 0.00 0.00 0.00 4.70
3255 5152 1.377725 GTCTGGTGGGAGCATGGTG 60.378 63.158 0.00 0.00 0.00 4.17
3268 5252 2.362077 AGCATGGTGTTTCTGGTTTGTC 59.638 45.455 0.00 0.00 0.00 3.18
3281 5265 2.818169 TTTGTCCCACAGGCTCGCT 61.818 57.895 0.00 0.00 0.00 4.93
3351 5343 2.026262 GGAGTGCCCTTGAGGATGTTAA 60.026 50.000 0.00 0.00 38.24 2.01
3357 5349 2.290896 CCCTTGAGGATGTTAAGGCACA 60.291 50.000 0.00 0.00 39.67 4.57
3358 5350 2.749621 CCTTGAGGATGTTAAGGCACAC 59.250 50.000 0.00 0.00 35.06 3.82
3359 5351 3.560025 CCTTGAGGATGTTAAGGCACACT 60.560 47.826 0.00 0.00 35.06 3.55
3360 5352 3.057969 TGAGGATGTTAAGGCACACTG 57.942 47.619 0.00 0.00 0.00 3.66
3361 5353 2.371841 TGAGGATGTTAAGGCACACTGT 59.628 45.455 0.00 0.00 0.00 3.55
3362 5354 3.181445 TGAGGATGTTAAGGCACACTGTT 60.181 43.478 0.00 0.00 0.00 3.16
3363 5355 3.821033 GAGGATGTTAAGGCACACTGTTT 59.179 43.478 0.00 0.00 0.00 2.83
3364 5356 3.569701 AGGATGTTAAGGCACACTGTTTG 59.430 43.478 0.00 0.00 0.00 2.93
3365 5357 3.317993 GGATGTTAAGGCACACTGTTTGT 59.682 43.478 0.00 0.00 39.97 2.83
3366 5358 4.202111 GGATGTTAAGGCACACTGTTTGTT 60.202 41.667 0.00 0.00 35.67 2.83
3367 5359 4.792521 TGTTAAGGCACACTGTTTGTTT 57.207 36.364 0.00 0.00 35.67 2.83
3368 5360 4.489810 TGTTAAGGCACACTGTTTGTTTG 58.510 39.130 0.00 0.00 35.67 2.93
3369 5361 4.021894 TGTTAAGGCACACTGTTTGTTTGT 60.022 37.500 0.00 0.00 35.67 2.83
3370 5362 3.676291 AAGGCACACTGTTTGTTTGTT 57.324 38.095 0.00 0.00 35.67 2.83
3371 5363 4.792521 AAGGCACACTGTTTGTTTGTTA 57.207 36.364 0.00 0.00 35.67 2.41
3372 5364 4.370364 AGGCACACTGTTTGTTTGTTAG 57.630 40.909 0.00 0.00 35.67 2.34
3412 5420 8.660373 CATGGTGAAAGAATAGTTCAGTTAGTC 58.340 37.037 0.00 0.00 35.71 2.59
3413 5421 7.963532 TGGTGAAAGAATAGTTCAGTTAGTCT 58.036 34.615 0.00 0.00 35.71 3.24
3487 5495 6.254281 ACTATCACAAATGGTTTGCTGTAC 57.746 37.500 2.54 0.00 44.39 2.90
3501 5604 8.904834 TGGTTTGCTGTACTTGAAACTAAATTA 58.095 29.630 11.44 0.00 0.00 1.40
3564 5733 3.399181 TGATTCCCTTCGCGGCCT 61.399 61.111 6.13 0.00 0.00 5.19
3691 5860 1.595382 GTTGCAGCAGTCGACAGGT 60.595 57.895 19.50 13.13 0.00 4.00
3736 5905 0.810031 GGCCGTGCGATCATGTAGTT 60.810 55.000 0.00 0.00 0.00 2.24
3838 6007 9.577110 CAATTTGTGTTCATAACTTCATATGCT 57.423 29.630 0.00 0.00 34.05 3.79
3853 6022 8.133627 ACTTCATATGCTAAAATGTGAATCAGC 58.866 33.333 0.00 0.00 37.15 4.26
3854 6023 7.812690 TCATATGCTAAAATGTGAATCAGCT 57.187 32.000 0.00 0.00 0.00 4.24
3855 6024 7.868775 TCATATGCTAAAATGTGAATCAGCTC 58.131 34.615 0.00 0.00 0.00 4.09
3856 6025 7.499895 TCATATGCTAAAATGTGAATCAGCTCA 59.500 33.333 0.00 0.00 0.00 4.26
3857 6026 5.963176 TGCTAAAATGTGAATCAGCTCAA 57.037 34.783 0.00 0.00 0.00 3.02
3858 6027 6.519679 TGCTAAAATGTGAATCAGCTCAAT 57.480 33.333 0.00 0.00 0.00 2.57
3859 6028 6.558009 TGCTAAAATGTGAATCAGCTCAATC 58.442 36.000 0.00 0.00 0.00 2.67
3860 6029 6.151480 TGCTAAAATGTGAATCAGCTCAATCA 59.849 34.615 0.00 0.00 0.00 2.57
3861 6030 7.031372 GCTAAAATGTGAATCAGCTCAATCAA 58.969 34.615 0.00 0.00 0.00 2.57
3862 6031 7.705325 GCTAAAATGTGAATCAGCTCAATCAAT 59.295 33.333 0.00 0.00 0.00 2.57
3900 6069 8.499403 AGAAACCATCTTGTCTAAAATAGAGC 57.501 34.615 0.00 0.00 33.39 4.09
3901 6070 8.325046 AGAAACCATCTTGTCTAAAATAGAGCT 58.675 33.333 0.00 0.00 33.39 4.09
3902 6071 9.601217 GAAACCATCTTGTCTAAAATAGAGCTA 57.399 33.333 0.00 0.00 35.04 3.32
3903 6072 9.606631 AAACCATCTTGTCTAAAATAGAGCTAG 57.393 33.333 0.00 0.00 35.04 3.42
3904 6073 8.540507 ACCATCTTGTCTAAAATAGAGCTAGA 57.459 34.615 0.00 0.00 35.04 2.43
3905 6074 8.417884 ACCATCTTGTCTAAAATAGAGCTAGAC 58.582 37.037 3.99 3.99 41.21 2.59
3906 6075 7.593273 CCATCTTGTCTAAAATAGAGCTAGACG 59.407 40.741 6.17 0.00 42.92 4.18
3907 6076 6.496571 TCTTGTCTAAAATAGAGCTAGACGC 58.503 40.000 6.17 0.00 42.92 5.19
3919 6088 1.927838 GCTAGACGCTTACAAAGAGGC 59.072 52.381 0.00 0.00 36.47 4.70
3924 6093 2.467962 GCTTACAAAGAGGCGACCC 58.532 57.895 0.00 0.00 0.00 4.46
3925 6094 0.321298 GCTTACAAAGAGGCGACCCA 60.321 55.000 0.00 0.00 0.00 4.51
3926 6095 1.880646 GCTTACAAAGAGGCGACCCAA 60.881 52.381 0.00 0.00 0.00 4.12
3927 6096 2.711542 CTTACAAAGAGGCGACCCAAT 58.288 47.619 0.00 0.00 0.00 3.16
3928 6097 3.869065 CTTACAAAGAGGCGACCCAATA 58.131 45.455 0.00 0.00 0.00 1.90
3929 6098 2.109425 ACAAAGAGGCGACCCAATAC 57.891 50.000 0.00 0.00 0.00 1.89
3930 6099 1.349688 ACAAAGAGGCGACCCAATACA 59.650 47.619 0.00 0.00 0.00 2.29
3931 6100 2.009774 CAAAGAGGCGACCCAATACAG 58.990 52.381 0.00 0.00 0.00 2.74
3932 6101 0.107654 AAGAGGCGACCCAATACAGC 60.108 55.000 0.00 0.00 0.00 4.40
3933 6102 1.883084 GAGGCGACCCAATACAGCG 60.883 63.158 0.00 0.00 0.00 5.18
3934 6103 2.895372 GGCGACCCAATACAGCGG 60.895 66.667 0.00 0.00 0.00 5.52
3935 6104 2.125269 GCGACCCAATACAGCGGT 60.125 61.111 0.00 0.00 0.00 5.68
3936 6105 2.461110 GCGACCCAATACAGCGGTG 61.461 63.158 14.13 14.13 0.00 4.94
3937 6106 1.216977 CGACCCAATACAGCGGTGA 59.783 57.895 23.44 5.36 0.00 4.02
3938 6107 1.082117 CGACCCAATACAGCGGTGAC 61.082 60.000 23.44 1.42 0.00 3.67
3939 6108 0.249398 GACCCAATACAGCGGTGACT 59.751 55.000 23.44 4.63 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 4.030452 GTTGGTGGCTCAGCACGC 62.030 66.667 0.00 0.00 41.66 5.34
336 337 2.754658 TCCCTCTCCGTCCGCTTC 60.755 66.667 0.00 0.00 0.00 3.86
365 366 2.125229 CGTCCGTCTCCTCTCCGA 60.125 66.667 0.00 0.00 0.00 4.55
383 384 4.722535 TCCTCTCCGGCCCTGCTT 62.723 66.667 0.00 0.00 0.00 3.91
473 474 2.359975 CCTTCACTTCGGCCACCC 60.360 66.667 2.24 0.00 0.00 4.61
476 477 3.171828 TTCGCCTTCACTTCGGCCA 62.172 57.895 2.24 0.00 43.38 5.36
482 483 1.374252 ATCGCGTTCGCCTTCACTT 60.374 52.632 5.77 0.00 35.26 3.16
483 484 2.094659 CATCGCGTTCGCCTTCACT 61.095 57.895 5.77 0.00 35.26 3.41
484 485 2.395690 CATCGCGTTCGCCTTCAC 59.604 61.111 5.77 0.00 35.26 3.18
485 486 2.813474 CCATCGCGTTCGCCTTCA 60.813 61.111 5.77 0.00 35.26 3.02
525 526 0.263765 TGATTCTACCCCGCCTAGGT 59.736 55.000 11.31 0.00 41.64 3.08
526 527 0.969894 CTGATTCTACCCCGCCTAGG 59.030 60.000 3.67 3.67 40.63 3.02
527 528 1.705873 ACTGATTCTACCCCGCCTAG 58.294 55.000 0.00 0.00 0.00 3.02
528 529 3.317455 TTACTGATTCTACCCCGCCTA 57.683 47.619 0.00 0.00 0.00 3.93
529 530 2.170012 TTACTGATTCTACCCCGCCT 57.830 50.000 0.00 0.00 0.00 5.52
530 531 2.550208 CCATTACTGATTCTACCCCGCC 60.550 54.545 0.00 0.00 0.00 6.13
531 532 2.550208 CCCATTACTGATTCTACCCCGC 60.550 54.545 0.00 0.00 0.00 6.13
532 533 2.038557 CCCCATTACTGATTCTACCCCG 59.961 54.545 0.00 0.00 0.00 5.73
533 534 2.375509 CCCCCATTACTGATTCTACCCC 59.624 54.545 0.00 0.00 0.00 4.95
534 535 3.053826 ACCCCCATTACTGATTCTACCC 58.946 50.000 0.00 0.00 0.00 3.69
535 536 3.072622 GGACCCCCATTACTGATTCTACC 59.927 52.174 0.00 0.00 0.00 3.18
536 537 3.244112 CGGACCCCCATTACTGATTCTAC 60.244 52.174 0.00 0.00 0.00 2.59
537 538 2.969950 CGGACCCCCATTACTGATTCTA 59.030 50.000 0.00 0.00 0.00 2.10
538 539 1.768870 CGGACCCCCATTACTGATTCT 59.231 52.381 0.00 0.00 0.00 2.40
539 540 1.202770 CCGGACCCCCATTACTGATTC 60.203 57.143 0.00 0.00 0.00 2.52
540 541 0.843984 CCGGACCCCCATTACTGATT 59.156 55.000 0.00 0.00 0.00 2.57
541 542 0.030501 TCCGGACCCCCATTACTGAT 60.031 55.000 0.00 0.00 0.00 2.90
542 543 0.030501 ATCCGGACCCCCATTACTGA 60.031 55.000 6.12 0.00 0.00 3.41
543 544 0.396811 GATCCGGACCCCCATTACTG 59.603 60.000 6.12 0.00 0.00 2.74
544 545 0.267960 AGATCCGGACCCCCATTACT 59.732 55.000 6.12 0.00 0.00 2.24
545 546 1.622312 GTAGATCCGGACCCCCATTAC 59.378 57.143 6.12 0.00 0.00 1.89
546 547 1.824444 CGTAGATCCGGACCCCCATTA 60.824 57.143 6.12 0.00 0.00 1.90
547 548 1.119574 CGTAGATCCGGACCCCCATT 61.120 60.000 6.12 0.00 0.00 3.16
548 549 1.533273 CGTAGATCCGGACCCCCAT 60.533 63.158 6.12 0.00 0.00 4.00
549 550 2.123597 CGTAGATCCGGACCCCCA 60.124 66.667 6.12 0.00 0.00 4.96
559 560 4.344474 CTCGCCCCGCCGTAGATC 62.344 72.222 0.00 0.00 0.00 2.75
560 561 4.889112 TCTCGCCCCGCCGTAGAT 62.889 66.667 0.00 0.00 0.00 1.98
566 567 4.222847 CTAAGGTCTCGCCCCGCC 62.223 72.222 0.00 0.00 38.26 6.13
567 568 2.234913 TTTCTAAGGTCTCGCCCCGC 62.235 60.000 0.00 0.00 38.26 6.13
568 569 0.179108 CTTTCTAAGGTCTCGCCCCG 60.179 60.000 0.00 0.00 38.26 5.73
569 570 0.903236 ACTTTCTAAGGTCTCGCCCC 59.097 55.000 0.00 0.00 38.26 5.80
570 571 2.764439 AACTTTCTAAGGTCTCGCCC 57.236 50.000 0.00 0.00 38.26 6.13
571 572 4.563061 TGTTAACTTTCTAAGGTCTCGCC 58.437 43.478 7.22 0.00 37.58 5.54
572 573 5.638234 ACATGTTAACTTTCTAAGGTCTCGC 59.362 40.000 7.22 0.00 0.00 5.03
573 574 8.645487 GTTACATGTTAACTTTCTAAGGTCTCG 58.355 37.037 2.30 0.00 0.00 4.04
574 575 9.708092 AGTTACATGTTAACTTTCTAAGGTCTC 57.292 33.333 2.30 0.00 34.40 3.36
575 576 9.708092 GAGTTACATGTTAACTTTCTAAGGTCT 57.292 33.333 2.30 0.00 37.83 3.85
576 577 9.708092 AGAGTTACATGTTAACTTTCTAAGGTC 57.292 33.333 2.30 0.00 37.83 3.85
579 580 9.813080 GCAAGAGTTACATGTTAACTTTCTAAG 57.187 33.333 2.30 5.14 37.83 2.18
580 581 9.332502 TGCAAGAGTTACATGTTAACTTTCTAA 57.667 29.630 2.30 0.00 37.83 2.10
581 582 8.896320 TGCAAGAGTTACATGTTAACTTTCTA 57.104 30.769 2.30 0.00 37.83 2.10
582 583 7.801716 TGCAAGAGTTACATGTTAACTTTCT 57.198 32.000 2.30 4.33 37.83 2.52
583 584 8.743099 GTTTGCAAGAGTTACATGTTAACTTTC 58.257 33.333 2.30 0.19 37.83 2.62
584 585 8.466798 AGTTTGCAAGAGTTACATGTTAACTTT 58.533 29.630 2.30 4.73 37.83 2.66
585 586 7.996385 AGTTTGCAAGAGTTACATGTTAACTT 58.004 30.769 2.30 1.75 37.83 2.66
586 587 7.568199 AGTTTGCAAGAGTTACATGTTAACT 57.432 32.000 2.30 11.62 40.15 2.24
587 588 9.893305 AATAGTTTGCAAGAGTTACATGTTAAC 57.107 29.630 2.30 6.86 0.00 2.01
590 591 8.629158 TGAAATAGTTTGCAAGAGTTACATGTT 58.371 29.630 2.30 0.00 0.00 2.71
591 592 8.165239 TGAAATAGTTTGCAAGAGTTACATGT 57.835 30.769 2.69 2.69 0.00 3.21
592 593 7.752239 CCTGAAATAGTTTGCAAGAGTTACATG 59.248 37.037 0.00 0.00 0.00 3.21
593 594 7.665559 TCCTGAAATAGTTTGCAAGAGTTACAT 59.334 33.333 0.00 0.00 0.00 2.29
594 595 6.995686 TCCTGAAATAGTTTGCAAGAGTTACA 59.004 34.615 0.00 0.00 0.00 2.41
595 596 7.435068 TCCTGAAATAGTTTGCAAGAGTTAC 57.565 36.000 0.00 0.00 0.00 2.50
596 597 6.149474 GCTCCTGAAATAGTTTGCAAGAGTTA 59.851 38.462 0.00 0.00 0.00 2.24
597 598 5.048434 GCTCCTGAAATAGTTTGCAAGAGTT 60.048 40.000 0.00 0.00 0.00 3.01
598 599 4.457257 GCTCCTGAAATAGTTTGCAAGAGT 59.543 41.667 0.00 0.00 0.00 3.24
599 600 4.142513 GGCTCCTGAAATAGTTTGCAAGAG 60.143 45.833 0.00 0.00 0.00 2.85
600 601 3.758554 GGCTCCTGAAATAGTTTGCAAGA 59.241 43.478 0.00 0.00 0.00 3.02
601 602 3.119352 GGGCTCCTGAAATAGTTTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
602 603 2.825532 GGGCTCCTGAAATAGTTTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
603 604 2.446435 GGGCTCCTGAAATAGTTTGCA 58.554 47.619 0.00 0.00 0.00 4.08
604 605 1.401905 CGGGCTCCTGAAATAGTTTGC 59.598 52.381 0.00 0.00 0.00 3.68
605 606 2.420022 CACGGGCTCCTGAAATAGTTTG 59.580 50.000 1.01 0.00 0.00 2.93
606 607 2.618045 CCACGGGCTCCTGAAATAGTTT 60.618 50.000 1.01 0.00 0.00 2.66
607 608 1.065418 CCACGGGCTCCTGAAATAGTT 60.065 52.381 1.01 0.00 0.00 2.24
608 609 0.541863 CCACGGGCTCCTGAAATAGT 59.458 55.000 1.01 0.00 0.00 2.12
609 610 0.815615 GCCACGGGCTCCTGAAATAG 60.816 60.000 7.58 0.00 46.69 1.73
610 611 1.223487 GCCACGGGCTCCTGAAATA 59.777 57.895 7.58 0.00 46.69 1.40
611 612 2.044946 GCCACGGGCTCCTGAAAT 60.045 61.111 7.58 0.00 46.69 2.17
624 625 3.862063 CTGCTCGTGCGTTTGCCAC 62.862 63.158 4.84 0.00 43.34 5.01
625 626 3.648982 CTGCTCGTGCGTTTGCCA 61.649 61.111 4.84 0.00 43.34 4.92
626 627 3.579626 GACTGCTCGTGCGTTTGCC 62.580 63.158 4.84 0.00 43.34 4.52
627 628 1.282248 TAGACTGCTCGTGCGTTTGC 61.282 55.000 4.84 0.00 43.34 3.68
628 629 0.435008 GTAGACTGCTCGTGCGTTTG 59.565 55.000 4.84 0.00 43.34 2.93
629 630 0.314302 AGTAGACTGCTCGTGCGTTT 59.686 50.000 4.84 4.25 43.34 3.60
630 631 1.130749 CTAGTAGACTGCTCGTGCGTT 59.869 52.381 4.84 0.00 43.34 4.84
631 632 0.727970 CTAGTAGACTGCTCGTGCGT 59.272 55.000 4.84 5.87 43.34 5.24
632 633 0.727970 ACTAGTAGACTGCTCGTGCG 59.272 55.000 3.59 2.63 43.34 5.34
633 634 4.751098 AGTATACTAGTAGACTGCTCGTGC 59.249 45.833 25.50 1.71 36.39 5.34
634 635 9.636879 TTATAGTATACTAGTAGACTGCTCGTG 57.363 37.037 31.21 0.00 38.03 4.35
635 636 9.859427 CTTATAGTATACTAGTAGACTGCTCGT 57.141 37.037 31.21 17.70 38.03 4.18
654 655 8.166706 CGTTTGCTTGAATAACGTTCTTATAGT 58.833 33.333 2.82 0.00 39.64 2.12
655 656 8.516571 CGTTTGCTTGAATAACGTTCTTATAG 57.483 34.615 2.82 3.66 39.64 1.31
665 666 8.964150 ACATTTTTCTACGTTTGCTTGAATAAC 58.036 29.630 0.00 0.00 0.00 1.89
666 667 9.522804 AACATTTTTCTACGTTTGCTTGAATAA 57.477 25.926 0.00 0.00 0.00 1.40
667 668 9.176181 GAACATTTTTCTACGTTTGCTTGAATA 57.824 29.630 0.00 0.00 0.00 1.75
668 669 7.920682 AGAACATTTTTCTACGTTTGCTTGAAT 59.079 29.630 0.00 0.00 0.00 2.57
669 670 7.254852 AGAACATTTTTCTACGTTTGCTTGAA 58.745 30.769 0.00 0.00 0.00 2.69
670 671 6.791303 AGAACATTTTTCTACGTTTGCTTGA 58.209 32.000 0.00 0.00 0.00 3.02
671 672 7.449934 AAGAACATTTTTCTACGTTTGCTTG 57.550 32.000 0.00 0.00 0.00 4.01
678 679 8.899771 CCCCAATATAAGAACATTTTTCTACGT 58.100 33.333 0.00 0.00 0.00 3.57
679 680 8.899771 ACCCCAATATAAGAACATTTTTCTACG 58.100 33.333 0.00 0.00 0.00 3.51
686 687 8.846211 CGTTCATACCCCAATATAAGAACATTT 58.154 33.333 0.00 0.00 35.19 2.32
687 688 8.215050 TCGTTCATACCCCAATATAAGAACATT 58.785 33.333 0.00 0.00 35.19 2.71
688 689 7.741785 TCGTTCATACCCCAATATAAGAACAT 58.258 34.615 0.00 0.00 35.19 2.71
689 690 7.127012 TCGTTCATACCCCAATATAAGAACA 57.873 36.000 0.00 0.00 35.19 3.18
690 691 8.617290 ATTCGTTCATACCCCAATATAAGAAC 57.383 34.615 0.00 0.00 0.00 3.01
694 695 8.952278 GCAATATTCGTTCATACCCCAATATAA 58.048 33.333 0.00 0.00 0.00 0.98
695 696 8.103935 TGCAATATTCGTTCATACCCCAATATA 58.896 33.333 0.00 0.00 0.00 0.86
696 697 6.945435 TGCAATATTCGTTCATACCCCAATAT 59.055 34.615 0.00 0.00 0.00 1.28
697 698 6.299922 TGCAATATTCGTTCATACCCCAATA 58.700 36.000 0.00 0.00 0.00 1.90
698 699 5.136828 TGCAATATTCGTTCATACCCCAAT 58.863 37.500 0.00 0.00 0.00 3.16
699 700 4.527944 TGCAATATTCGTTCATACCCCAA 58.472 39.130 0.00 0.00 0.00 4.12
700 701 4.157849 TGCAATATTCGTTCATACCCCA 57.842 40.909 0.00 0.00 0.00 4.96
701 702 5.508200 TTTGCAATATTCGTTCATACCCC 57.492 39.130 0.00 0.00 0.00 4.95
702 703 9.769093 GTATATTTGCAATATTCGTTCATACCC 57.231 33.333 0.00 0.00 0.00 3.69
706 707 9.507329 AGGAGTATATTTGCAATATTCGTTCAT 57.493 29.630 0.00 0.00 0.00 2.57
707 708 8.902540 AGGAGTATATTTGCAATATTCGTTCA 57.097 30.769 0.00 0.00 0.00 3.18
709 710 9.998106 AGTAGGAGTATATTTGCAATATTCGTT 57.002 29.630 0.00 0.00 0.00 3.85
710 711 9.640963 GAGTAGGAGTATATTTGCAATATTCGT 57.359 33.333 0.00 1.00 0.00 3.85
711 712 9.088512 GGAGTAGGAGTATATTTGCAATATTCG 57.911 37.037 0.00 0.00 0.00 3.34
712 713 9.384764 GGGAGTAGGAGTATATTTGCAATATTC 57.615 37.037 0.00 0.00 0.00 1.75
713 714 8.329502 GGGGAGTAGGAGTATATTTGCAATATT 58.670 37.037 0.00 0.00 0.00 1.28
714 715 7.461043 TGGGGAGTAGGAGTATATTTGCAATAT 59.539 37.037 0.00 3.47 0.00 1.28
715 716 6.790461 TGGGGAGTAGGAGTATATTTGCAATA 59.210 38.462 0.00 0.00 0.00 1.90
716 717 5.610982 TGGGGAGTAGGAGTATATTTGCAAT 59.389 40.000 0.00 0.00 0.00 3.56
717 718 4.972568 TGGGGAGTAGGAGTATATTTGCAA 59.027 41.667 0.00 0.00 0.00 4.08
718 719 4.562767 TGGGGAGTAGGAGTATATTTGCA 58.437 43.478 0.00 0.00 0.00 4.08
719 720 5.763876 ATGGGGAGTAGGAGTATATTTGC 57.236 43.478 0.00 0.00 0.00 3.68
720 721 9.101325 TCTTTATGGGGAGTAGGAGTATATTTG 57.899 37.037 0.00 0.00 0.00 2.32
721 722 9.684702 TTCTTTATGGGGAGTAGGAGTATATTT 57.315 33.333 0.00 0.00 0.00 1.40
722 723 9.327731 CTTCTTTATGGGGAGTAGGAGTATATT 57.672 37.037 0.00 0.00 0.00 1.28
723 724 8.465971 ACTTCTTTATGGGGAGTAGGAGTATAT 58.534 37.037 0.00 0.00 0.00 0.86
724 725 7.728981 CACTTCTTTATGGGGAGTAGGAGTATA 59.271 40.741 0.00 0.00 0.00 1.47
725 726 6.555360 CACTTCTTTATGGGGAGTAGGAGTAT 59.445 42.308 0.00 0.00 0.00 2.12
726 727 5.897824 CACTTCTTTATGGGGAGTAGGAGTA 59.102 44.000 0.00 0.00 0.00 2.59
727 728 4.717280 CACTTCTTTATGGGGAGTAGGAGT 59.283 45.833 0.00 0.00 0.00 3.85
728 729 4.717280 ACACTTCTTTATGGGGAGTAGGAG 59.283 45.833 0.00 0.00 0.00 3.69
729 730 4.695606 ACACTTCTTTATGGGGAGTAGGA 58.304 43.478 0.00 0.00 0.00 2.94
730 731 6.383147 TCTTACACTTCTTTATGGGGAGTAGG 59.617 42.308 0.00 0.00 0.00 3.18
731 732 7.419711 TCTTACACTTCTTTATGGGGAGTAG 57.580 40.000 0.00 0.00 0.00 2.57
732 733 6.127140 GCTCTTACACTTCTTTATGGGGAGTA 60.127 42.308 0.00 0.00 0.00 2.59
733 734 5.338463 GCTCTTACACTTCTTTATGGGGAGT 60.338 44.000 0.00 0.00 0.00 3.85
734 735 5.119694 GCTCTTACACTTCTTTATGGGGAG 58.880 45.833 0.00 0.00 0.00 4.30
735 736 4.382685 CGCTCTTACACTTCTTTATGGGGA 60.383 45.833 0.00 0.00 0.00 4.81
736 737 3.871594 CGCTCTTACACTTCTTTATGGGG 59.128 47.826 0.00 0.00 0.00 4.96
737 738 4.504858 ACGCTCTTACACTTCTTTATGGG 58.495 43.478 0.00 0.00 0.00 4.00
738 739 6.481954 AAACGCTCTTACACTTCTTTATGG 57.518 37.500 0.00 0.00 0.00 2.74
739 740 8.240883 AGTAAACGCTCTTACACTTCTTTATG 57.759 34.615 7.34 0.00 34.75 1.90
741 742 9.350357 CATAGTAAACGCTCTTACACTTCTTTA 57.650 33.333 7.34 0.00 34.75 1.85
742 743 7.871463 ACATAGTAAACGCTCTTACACTTCTTT 59.129 33.333 7.34 0.00 34.75 2.52
743 744 7.376615 ACATAGTAAACGCTCTTACACTTCTT 58.623 34.615 7.34 0.00 34.75 2.52
744 745 6.921914 ACATAGTAAACGCTCTTACACTTCT 58.078 36.000 7.34 0.00 34.75 2.85
745 746 7.219726 GGTACATAGTAAACGCTCTTACACTTC 59.780 40.741 0.00 0.00 34.75 3.01
746 747 7.031975 GGTACATAGTAAACGCTCTTACACTT 58.968 38.462 0.00 0.00 34.75 3.16
747 748 6.558909 GGTACATAGTAAACGCTCTTACACT 58.441 40.000 0.00 0.00 34.75 3.55
748 749 5.453587 CGGTACATAGTAAACGCTCTTACAC 59.546 44.000 0.00 0.00 34.75 2.90
749 750 5.353956 TCGGTACATAGTAAACGCTCTTACA 59.646 40.000 0.00 0.00 34.75 2.41
750 751 5.810525 TCGGTACATAGTAAACGCTCTTAC 58.189 41.667 0.00 0.00 32.84 2.34
751 752 6.435430 TTCGGTACATAGTAAACGCTCTTA 57.565 37.500 0.00 0.00 0.00 2.10
752 753 4.970662 TCGGTACATAGTAAACGCTCTT 57.029 40.909 0.00 0.00 0.00 2.85
753 754 4.970662 TTCGGTACATAGTAAACGCTCT 57.029 40.909 0.00 0.00 0.00 4.09
754 755 6.914757 ACTATTTCGGTACATAGTAAACGCTC 59.085 38.462 2.58 0.00 34.95 5.03
755 756 6.799512 ACTATTTCGGTACATAGTAAACGCT 58.200 36.000 2.58 0.00 34.95 5.07
756 757 7.009540 ACAACTATTTCGGTACATAGTAAACGC 59.990 37.037 4.52 0.00 35.54 4.84
757 758 8.398491 ACAACTATTTCGGTACATAGTAAACG 57.602 34.615 4.52 0.00 35.54 3.60
758 759 8.526681 CGACAACTATTTCGGTACATAGTAAAC 58.473 37.037 4.52 0.53 35.54 2.01
759 760 7.220683 GCGACAACTATTTCGGTACATAGTAAA 59.779 37.037 4.52 0.00 35.54 2.01
760 761 6.692681 GCGACAACTATTTCGGTACATAGTAA 59.307 38.462 4.52 0.00 35.54 2.24
761 762 6.038603 AGCGACAACTATTTCGGTACATAGTA 59.961 38.462 4.52 0.00 43.71 1.82
762 763 5.039333 GCGACAACTATTTCGGTACATAGT 58.961 41.667 0.00 0.00 37.75 2.12
763 764 5.279384 AGCGACAACTATTTCGGTACATAG 58.721 41.667 0.00 0.00 43.71 2.23
764 765 5.252969 AGCGACAACTATTTCGGTACATA 57.747 39.130 0.00 0.00 43.71 2.29
765 766 4.110482 GAGCGACAACTATTTCGGTACAT 58.890 43.478 0.00 0.00 45.40 2.29
766 767 3.504863 GAGCGACAACTATTTCGGTACA 58.495 45.455 0.00 0.00 45.40 2.90
767 768 2.856557 GGAGCGACAACTATTTCGGTAC 59.143 50.000 0.00 0.00 45.40 3.34
768 769 2.478370 CGGAGCGACAACTATTTCGGTA 60.478 50.000 0.00 0.00 45.40 4.02
770 771 0.921347 CGGAGCGACAACTATTTCGG 59.079 55.000 0.00 0.00 35.73 4.30
771 772 0.921347 CCGGAGCGACAACTATTTCG 59.079 55.000 0.00 0.00 38.31 3.46
772 773 2.005971 ACCGGAGCGACAACTATTTC 57.994 50.000 9.46 0.00 0.00 2.17
773 774 2.231964 TGTACCGGAGCGACAACTATTT 59.768 45.455 9.46 0.00 0.00 1.40
774 775 1.820519 TGTACCGGAGCGACAACTATT 59.179 47.619 9.46 0.00 0.00 1.73
775 776 1.404391 CTGTACCGGAGCGACAACTAT 59.596 52.381 9.46 0.00 0.00 2.12
776 777 0.806868 CTGTACCGGAGCGACAACTA 59.193 55.000 9.46 0.00 0.00 2.24
777 778 0.892358 TCTGTACCGGAGCGACAACT 60.892 55.000 9.46 0.00 0.00 3.16
778 779 0.456312 CTCTGTACCGGAGCGACAAC 60.456 60.000 9.46 0.00 29.69 3.32
779 780 1.592400 CCTCTGTACCGGAGCGACAA 61.592 60.000 9.46 0.00 35.69 3.18
780 781 2.044555 CCTCTGTACCGGAGCGACA 61.045 63.158 9.46 5.74 35.69 4.35
781 782 2.772691 CCCTCTGTACCGGAGCGAC 61.773 68.421 9.46 0.41 35.69 5.19
782 783 2.439701 CCCTCTGTACCGGAGCGA 60.440 66.667 9.46 0.00 35.69 4.93
783 784 2.439701 TCCCTCTGTACCGGAGCG 60.440 66.667 9.46 0.00 35.69 5.03
784 785 0.106819 TACTCCCTCTGTACCGGAGC 60.107 60.000 9.46 0.00 46.03 4.70
786 787 1.293062 AGTACTCCCTCTGTACCGGA 58.707 55.000 9.46 0.00 40.61 5.14
787 788 3.505480 ATAGTACTCCCTCTGTACCGG 57.495 52.381 0.00 0.00 40.61 5.28
788 789 5.226194 AGTATAGTACTCCCTCTGTACCG 57.774 47.826 0.00 0.00 40.61 4.02
789 790 6.363882 ACAAGTATAGTACTCCCTCTGTACC 58.636 44.000 0.00 0.00 40.61 3.34
790 791 7.878547 AACAAGTATAGTACTCCCTCTGTAC 57.121 40.000 0.00 0.00 38.26 2.90
792 793 9.490083 AATTAACAAGTATAGTACTCCCTCTGT 57.510 33.333 0.00 0.00 38.26 3.41
821 822 8.853345 CGAAGTACGTATTTGTAGCTCTAAAAA 58.147 33.333 8.17 0.00 37.22 1.94
822 823 8.385789 CGAAGTACGTATTTGTAGCTCTAAAA 57.614 34.615 8.17 0.00 37.22 1.52
823 824 7.959718 CGAAGTACGTATTTGTAGCTCTAAA 57.040 36.000 8.17 0.00 37.22 1.85
841 842 4.771577 TGTCCCATTAACCAGTACGAAGTA 59.228 41.667 0.00 0.00 45.11 2.24
843 844 4.196626 TGTCCCATTAACCAGTACGAAG 57.803 45.455 0.00 0.00 0.00 3.79
844 845 4.620589 TTGTCCCATTAACCAGTACGAA 57.379 40.909 0.00 0.00 0.00 3.85
845 846 4.202336 TGTTTGTCCCATTAACCAGTACGA 60.202 41.667 0.00 0.00 0.00 3.43
846 847 4.066490 TGTTTGTCCCATTAACCAGTACG 58.934 43.478 0.00 0.00 0.00 3.67
1566 1587 1.526917 GCGCAGGTCTATTGGCCAT 60.527 57.895 6.09 0.00 0.00 4.40
1780 1801 2.592308 GGTCTGGCTCCCCATGAC 59.408 66.667 0.00 0.00 41.21 3.06
1863 1884 2.105477 GGCATCCACCACATCTATGTCT 59.895 50.000 0.00 0.00 39.39 3.41
1869 1890 1.620589 AGGGGCATCCACCACATCT 60.621 57.895 0.00 0.00 34.56 2.90
1872 1893 3.716195 CGAGGGGCATCCACCACA 61.716 66.667 0.00 0.00 34.56 4.17
2022 2121 0.981183 TGACGGTGTTGCTAATCCCT 59.019 50.000 0.00 0.00 0.00 4.20
2216 2619 1.012841 GGGAAGCATCTGAGAAAGCG 58.987 55.000 4.90 0.00 0.00 4.68
2268 2671 1.164411 TGCCAATGCAGAGTTAACCG 58.836 50.000 0.88 0.00 44.23 4.44
2475 2936 7.504924 AACTATAAGCAACAACAACTAAGCA 57.495 32.000 0.00 0.00 0.00 3.91
2498 2971 9.542462 GTGCATACATTAGTTCAGGTATCTTAA 57.458 33.333 0.00 0.00 0.00 1.85
2530 3003 1.475034 GGCGGGACTGCAGATGAAATA 60.475 52.381 23.35 0.00 36.28 1.40
2557 3030 1.202806 CCTTGCCAGTGGACTCTTCAA 60.203 52.381 15.20 5.39 0.00 2.69
2762 3255 1.891933 TGGCCCTCACATTATCCTCA 58.108 50.000 0.00 0.00 0.00 3.86
3249 5146 2.035832 GGGACAAACCAGAAACACCATG 59.964 50.000 0.00 0.00 41.20 3.66
3255 5152 1.681264 CCTGTGGGACAAACCAGAAAC 59.319 52.381 0.00 0.00 44.16 2.78
3281 5265 1.383456 AAAAACCTCACTGCAGCGCA 61.383 50.000 15.27 3.35 36.92 6.09
3351 5343 4.013728 TCTAACAAACAAACAGTGTGCCT 58.986 39.130 0.00 0.00 40.60 4.75
3357 5349 6.183360 GGCTAACAGTCTAACAAACAAACAGT 60.183 38.462 0.00 0.00 0.00 3.55
3358 5350 6.183360 TGGCTAACAGTCTAACAAACAAACAG 60.183 38.462 0.00 0.00 0.00 3.16
3359 5351 5.648526 TGGCTAACAGTCTAACAAACAAACA 59.351 36.000 0.00 0.00 0.00 2.83
3360 5352 6.126568 TGGCTAACAGTCTAACAAACAAAC 57.873 37.500 0.00 0.00 0.00 2.93
3361 5353 6.734137 CATGGCTAACAGTCTAACAAACAAA 58.266 36.000 0.00 0.00 0.00 2.83
3362 5354 5.278266 GCATGGCTAACAGTCTAACAAACAA 60.278 40.000 0.00 0.00 0.00 2.83
3363 5355 4.215399 GCATGGCTAACAGTCTAACAAACA 59.785 41.667 0.00 0.00 0.00 2.83
3364 5356 4.215399 TGCATGGCTAACAGTCTAACAAAC 59.785 41.667 0.00 0.00 0.00 2.93
3365 5357 4.393834 TGCATGGCTAACAGTCTAACAAA 58.606 39.130 0.00 0.00 0.00 2.83
3366 5358 4.014569 TGCATGGCTAACAGTCTAACAA 57.985 40.909 0.00 0.00 0.00 2.83
3367 5359 3.694043 TGCATGGCTAACAGTCTAACA 57.306 42.857 0.00 0.00 0.00 2.41
3368 5360 3.313526 CCATGCATGGCTAACAGTCTAAC 59.686 47.826 31.95 0.00 41.75 2.34
3369 5361 3.544684 CCATGCATGGCTAACAGTCTAA 58.455 45.455 31.95 0.00 41.75 2.10
3370 5362 3.198409 CCATGCATGGCTAACAGTCTA 57.802 47.619 31.95 0.00 41.75 2.59
3371 5363 2.048444 CCATGCATGGCTAACAGTCT 57.952 50.000 31.95 0.00 41.75 3.24
3412 5420 0.820891 AACTTCCTGCCAGCACACAG 60.821 55.000 0.00 0.00 0.00 3.66
3413 5421 1.102809 CAACTTCCTGCCAGCACACA 61.103 55.000 0.00 0.00 0.00 3.72
3501 5604 4.037923 ACACAAACGCAGAATGAAATCCTT 59.962 37.500 0.00 0.00 39.69 3.36
3564 5733 7.817418 AAATTTAGAAGCACCTTACACAGAA 57.183 32.000 0.00 0.00 0.00 3.02
3601 5770 5.365619 TGAACCTGAACCTGAGTTAAGAAC 58.634 41.667 0.00 0.00 36.65 3.01
3691 5860 2.028484 GCACGACGGACAAGGACA 59.972 61.111 0.00 0.00 0.00 4.02
3736 5905 1.123077 AGGTGTGTTCTGCAGACTGA 58.877 50.000 18.03 0.00 40.76 3.41
3771 5940 4.244862 CCAAGTTTTGAGTTGCAGTTGTT 58.755 39.130 0.00 0.00 0.00 2.83
3807 5976 7.215789 TGAAGTTATGAACACAAATTGCCAAT 58.784 30.769 0.00 0.00 0.00 3.16
3874 6043 8.951243 GCTCTATTTTAGACAAGATGGTTTCTT 58.049 33.333 0.00 0.00 45.83 2.52
3875 6044 8.325046 AGCTCTATTTTAGACAAGATGGTTTCT 58.675 33.333 0.00 0.00 35.70 2.52
3876 6045 8.499403 AGCTCTATTTTAGACAAGATGGTTTC 57.501 34.615 0.00 0.00 0.00 2.78
3877 6046 9.606631 CTAGCTCTATTTTAGACAAGATGGTTT 57.393 33.333 0.00 0.00 0.00 3.27
3878 6047 8.982723 TCTAGCTCTATTTTAGACAAGATGGTT 58.017 33.333 0.00 0.00 0.00 3.67
3879 6048 8.417884 GTCTAGCTCTATTTTAGACAAGATGGT 58.582 37.037 5.81 0.00 41.71 3.55
3880 6049 7.593273 CGTCTAGCTCTATTTTAGACAAGATGG 59.407 40.741 10.35 0.00 42.03 3.51
3881 6050 7.114247 GCGTCTAGCTCTATTTTAGACAAGATG 59.886 40.741 10.35 1.36 42.03 2.90
3882 6051 7.142680 GCGTCTAGCTCTATTTTAGACAAGAT 58.857 38.462 10.35 0.00 42.03 2.40
3883 6052 6.496571 GCGTCTAGCTCTATTTTAGACAAGA 58.503 40.000 10.35 0.00 42.03 3.02
3884 6053 6.741448 GCGTCTAGCTCTATTTTAGACAAG 57.259 41.667 10.35 0.00 42.03 3.16
3900 6069 2.186076 CGCCTCTTTGTAAGCGTCTAG 58.814 52.381 0.00 0.00 43.45 2.43
3901 6070 2.273370 CGCCTCTTTGTAAGCGTCTA 57.727 50.000 0.00 0.00 43.45 2.59
3902 6071 3.123674 CGCCTCTTTGTAAGCGTCT 57.876 52.632 0.00 0.00 43.45 4.18
3906 6075 0.321298 TGGGTCGCCTCTTTGTAAGC 60.321 55.000 0.00 0.00 0.00 3.09
3907 6076 2.178912 TTGGGTCGCCTCTTTGTAAG 57.821 50.000 0.00 0.00 0.00 2.34
3908 6077 2.871096 ATTGGGTCGCCTCTTTGTAA 57.129 45.000 0.00 0.00 0.00 2.41
3909 6078 2.568062 TGTATTGGGTCGCCTCTTTGTA 59.432 45.455 0.00 0.00 0.00 2.41
3910 6079 1.349688 TGTATTGGGTCGCCTCTTTGT 59.650 47.619 0.00 0.00 0.00 2.83
3911 6080 2.009774 CTGTATTGGGTCGCCTCTTTG 58.990 52.381 0.00 0.00 0.00 2.77
3912 6081 1.679032 GCTGTATTGGGTCGCCTCTTT 60.679 52.381 0.00 0.00 0.00 2.52
3913 6082 0.107654 GCTGTATTGGGTCGCCTCTT 60.108 55.000 0.00 0.00 0.00 2.85
3914 6083 1.522569 GCTGTATTGGGTCGCCTCT 59.477 57.895 0.00 0.00 0.00 3.69
3915 6084 1.883084 CGCTGTATTGGGTCGCCTC 60.883 63.158 0.00 0.00 0.00 4.70
3916 6085 2.186903 CGCTGTATTGGGTCGCCT 59.813 61.111 0.00 0.00 0.00 5.52
3917 6086 2.895372 CCGCTGTATTGGGTCGCC 60.895 66.667 0.00 0.00 0.00 5.54
3918 6087 2.125269 ACCGCTGTATTGGGTCGC 60.125 61.111 0.00 0.00 0.00 5.19
3919 6088 1.082117 GTCACCGCTGTATTGGGTCG 61.082 60.000 0.00 0.00 29.82 4.79
3920 6089 0.249398 AGTCACCGCTGTATTGGGTC 59.751 55.000 0.00 0.00 29.82 4.46
3921 6090 2.372852 AGTCACCGCTGTATTGGGT 58.627 52.632 0.00 0.00 33.37 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.