Multiple sequence alignment - TraesCS3B01G500000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G500000 chr3B 100.000 2477 0 0 1 2477 744538559 744536083 0.000000e+00 4575.0
1 TraesCS3B01G500000 chr3B 86.786 280 20 6 1 270 747329638 747329910 1.860000e-76 296.0
2 TraesCS3B01G500000 chr3B 85.057 87 13 0 1585 1671 744536909 744536823 3.390000e-14 89.8
3 TraesCS3B01G500000 chr3B 85.057 87 13 0 1651 1737 744536975 744536889 3.390000e-14 89.8
4 TraesCS3B01G500000 chr6B 89.218 2096 153 29 408 2477 4273924 4275972 0.000000e+00 2551.0
5 TraesCS3B01G500000 chr6B 78.115 923 167 29 408 1311 638984614 638985520 1.000000e-153 553.0
6 TraesCS3B01G500000 chr2B 89.681 1977 147 19 516 2477 769982524 769984458 0.000000e+00 2468.0
7 TraesCS3B01G500000 chr7D 88.578 1322 118 15 408 1714 633361892 633360589 0.000000e+00 1574.0
8 TraesCS3B01G500000 chr7D 95.392 868 38 2 1611 2477 633360726 633359860 0.000000e+00 1380.0
9 TraesCS3B01G500000 chr7D 79.951 823 114 27 408 1211 158755287 158756077 2.150000e-155 558.0
10 TraesCS3B01G500000 chr7D 93.043 115 8 0 410 524 633356471 633356585 4.240000e-38 169.0
11 TraesCS3B01G500000 chr7B 87.550 1253 111 19 408 1636 689859167 689857936 0.000000e+00 1408.0
12 TraesCS3B01G500000 chr7B 91.939 856 45 10 1640 2477 689857999 689857150 0.000000e+00 1177.0
13 TraesCS3B01G500000 chr7B 93.162 117 8 0 415 531 689853829 689853945 3.280000e-39 172.0
14 TraesCS3B01G500000 chr5D 93.841 828 51 0 1650 2477 74186606 74187433 0.000000e+00 1247.0
15 TraesCS3B01G500000 chr5D 88.342 772 80 6 900 1671 74185932 74186693 0.000000e+00 918.0
16 TraesCS3B01G500000 chr5D 88.089 764 89 2 1713 2475 357883453 357884215 0.000000e+00 905.0
17 TraesCS3B01G500000 chr5D 82.578 287 28 7 408 682 74185648 74185924 1.480000e-57 233.0
18 TraesCS3B01G500000 chr1A 95.385 650 27 1 1828 2477 577423363 577422717 0.000000e+00 1031.0
19 TraesCS3B01G500000 chr1A 88.725 745 59 11 410 1140 577445381 577444648 0.000000e+00 887.0
20 TraesCS3B01G500000 chr1A 86.724 580 71 2 1135 1714 577425056 577424483 7.470000e-180 640.0
21 TraesCS3B01G500000 chr3D 88.482 764 86 2 1713 2475 420457060 420457822 0.000000e+00 922.0
22 TraesCS3B01G500000 chr3D 88.727 275 18 10 1 270 560273248 560272982 8.540000e-85 324.0
23 TraesCS3B01G500000 chr2D 88.482 764 86 2 1713 2475 8944985 8945747 0.000000e+00 922.0
24 TraesCS3B01G500000 chr3A 84.828 435 34 15 1 411 696345557 696345131 2.290000e-110 409.0
25 TraesCS3B01G500000 chr3A 87.654 162 13 5 48 208 629066529 629066684 5.440000e-42 182.0
26 TraesCS3B01G500000 chrUn 92.174 115 8 1 410 524 84033670 84033783 7.090000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G500000 chr3B 744536083 744538559 2476 True 1584.866667 4575 90.038000 1 2477 3 chr3B.!!$R1 2476
1 TraesCS3B01G500000 chr6B 4273924 4275972 2048 False 2551.000000 2551 89.218000 408 2477 1 chr6B.!!$F1 2069
2 TraesCS3B01G500000 chr6B 638984614 638985520 906 False 553.000000 553 78.115000 408 1311 1 chr6B.!!$F2 903
3 TraesCS3B01G500000 chr2B 769982524 769984458 1934 False 2468.000000 2468 89.681000 516 2477 1 chr2B.!!$F1 1961
4 TraesCS3B01G500000 chr7D 633359860 633361892 2032 True 1477.000000 1574 91.985000 408 2477 2 chr7D.!!$R1 2069
5 TraesCS3B01G500000 chr7D 158755287 158756077 790 False 558.000000 558 79.951000 408 1211 1 chr7D.!!$F1 803
6 TraesCS3B01G500000 chr7B 689857150 689859167 2017 True 1292.500000 1408 89.744500 408 2477 2 chr7B.!!$R1 2069
7 TraesCS3B01G500000 chr5D 357883453 357884215 762 False 905.000000 905 88.089000 1713 2475 1 chr5D.!!$F1 762
8 TraesCS3B01G500000 chr5D 74185648 74187433 1785 False 799.333333 1247 88.253667 408 2477 3 chr5D.!!$F2 2069
9 TraesCS3B01G500000 chr1A 577444648 577445381 733 True 887.000000 887 88.725000 410 1140 1 chr1A.!!$R1 730
10 TraesCS3B01G500000 chr1A 577422717 577425056 2339 True 835.500000 1031 91.054500 1135 2477 2 chr1A.!!$R2 1342
11 TraesCS3B01G500000 chr3D 420457060 420457822 762 False 922.000000 922 88.482000 1713 2475 1 chr3D.!!$F1 762
12 TraesCS3B01G500000 chr2D 8944985 8945747 762 False 922.000000 922 88.482000 1713 2475 1 chr2D.!!$F1 762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 343 0.100503 ACCACGCTTGTTGTGCTTTC 59.899 50.0 0.0 0.0 36.01 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 1641 0.108207 ACTTGCTCTGCTCTTGTGCT 59.892 50.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.217978 TCCGTACATAACCTTCAAAGTGT 57.782 39.130 0.00 0.00 0.00 3.55
23 24 5.232463 TCCGTACATAACCTTCAAAGTGTC 58.768 41.667 0.00 0.00 0.00 3.67
24 25 5.011329 TCCGTACATAACCTTCAAAGTGTCT 59.989 40.000 0.00 0.00 0.00 3.41
25 26 5.699458 CCGTACATAACCTTCAAAGTGTCTT 59.301 40.000 0.00 0.00 0.00 3.01
26 27 6.128634 CCGTACATAACCTTCAAAGTGTCTTC 60.129 42.308 0.00 0.00 0.00 2.87
27 28 6.422701 CGTACATAACCTTCAAAGTGTCTTCA 59.577 38.462 0.00 0.00 0.00 3.02
28 29 7.117812 CGTACATAACCTTCAAAGTGTCTTCAT 59.882 37.037 0.00 0.00 0.00 2.57
29 30 9.431887 GTACATAACCTTCAAAGTGTCTTCATA 57.568 33.333 0.00 0.00 0.00 2.15
31 32 9.167311 ACATAACCTTCAAAGTGTCTTCATATC 57.833 33.333 0.00 0.00 0.00 1.63
32 33 6.727824 AACCTTCAAAGTGTCTTCATATCG 57.272 37.500 0.00 0.00 0.00 2.92
33 34 5.178797 ACCTTCAAAGTGTCTTCATATCGG 58.821 41.667 0.00 0.00 0.00 4.18
34 35 5.046591 ACCTTCAAAGTGTCTTCATATCGGA 60.047 40.000 0.00 0.00 0.00 4.55
35 36 5.874810 CCTTCAAAGTGTCTTCATATCGGAA 59.125 40.000 0.00 0.00 0.00 4.30
36 37 6.371548 CCTTCAAAGTGTCTTCATATCGGAAA 59.628 38.462 0.00 0.00 0.00 3.13
37 38 7.066284 CCTTCAAAGTGTCTTCATATCGGAAAT 59.934 37.037 0.00 0.00 0.00 2.17
38 39 7.539712 TCAAAGTGTCTTCATATCGGAAATC 57.460 36.000 0.00 0.00 0.00 2.17
39 40 6.538742 TCAAAGTGTCTTCATATCGGAAATCC 59.461 38.462 0.00 0.00 0.00 3.01
40 41 5.878406 AGTGTCTTCATATCGGAAATCCT 57.122 39.130 0.00 0.00 0.00 3.24
41 42 6.978674 AGTGTCTTCATATCGGAAATCCTA 57.021 37.500 0.00 0.00 0.00 2.94
42 43 7.546250 AGTGTCTTCATATCGGAAATCCTAT 57.454 36.000 0.00 0.00 0.00 2.57
43 44 7.967908 AGTGTCTTCATATCGGAAATCCTATT 58.032 34.615 0.00 0.00 0.00 1.73
44 45 8.091449 AGTGTCTTCATATCGGAAATCCTATTC 58.909 37.037 0.00 0.00 0.00 1.75
45 46 7.332182 GTGTCTTCATATCGGAAATCCTATTCC 59.668 40.741 0.00 0.00 44.50 3.01
53 54 4.138487 GGAAATCCTATTCCGAGTGTGT 57.862 45.455 0.00 0.00 39.54 3.72
54 55 4.514401 GGAAATCCTATTCCGAGTGTGTT 58.486 43.478 0.00 0.00 39.54 3.32
55 56 4.941873 GGAAATCCTATTCCGAGTGTGTTT 59.058 41.667 0.00 0.00 39.54 2.83
56 57 5.414765 GGAAATCCTATTCCGAGTGTGTTTT 59.585 40.000 0.00 0.00 39.54 2.43
57 58 6.596497 GGAAATCCTATTCCGAGTGTGTTTTA 59.404 38.462 0.00 0.00 39.54 1.52
58 59 7.282450 GGAAATCCTATTCCGAGTGTGTTTTAT 59.718 37.037 0.00 0.00 39.54 1.40
59 60 9.321562 GAAATCCTATTCCGAGTGTGTTTTATA 57.678 33.333 0.00 0.00 0.00 0.98
60 61 8.658499 AATCCTATTCCGAGTGTGTTTTATAC 57.342 34.615 0.00 0.00 0.00 1.47
61 62 7.172868 TCCTATTCCGAGTGTGTTTTATACA 57.827 36.000 0.00 0.00 0.00 2.29
62 63 7.788026 TCCTATTCCGAGTGTGTTTTATACAT 58.212 34.615 0.00 0.00 39.39 2.29
63 64 7.924412 TCCTATTCCGAGTGTGTTTTATACATC 59.076 37.037 0.00 0.00 39.39 3.06
64 65 7.709182 CCTATTCCGAGTGTGTTTTATACATCA 59.291 37.037 0.00 0.00 39.39 3.07
65 66 7.915293 ATTCCGAGTGTGTTTTATACATCAA 57.085 32.000 0.00 0.00 39.39 2.57
66 67 7.915293 TTCCGAGTGTGTTTTATACATCAAT 57.085 32.000 0.00 0.00 39.39 2.57
67 68 9.607988 ATTCCGAGTGTGTTTTATACATCAATA 57.392 29.630 0.00 0.00 39.39 1.90
68 69 9.607988 TTCCGAGTGTGTTTTATACATCAATAT 57.392 29.630 0.00 0.00 39.39 1.28
69 70 9.607988 TCCGAGTGTGTTTTATACATCAATATT 57.392 29.630 0.00 0.00 39.39 1.28
98 99 8.764524 ACAAGTCACATGAGATAACTTAAGTC 57.235 34.615 8.95 0.00 0.00 3.01
99 100 8.367911 ACAAGTCACATGAGATAACTTAAGTCA 58.632 33.333 8.95 2.34 0.00 3.41
100 101 9.376075 CAAGTCACATGAGATAACTTAAGTCAT 57.624 33.333 8.95 0.00 0.00 3.06
143 144 7.881643 AGTAGATGAAGATCACATAATTCGC 57.118 36.000 0.00 0.00 0.00 4.70
144 145 7.436933 AGTAGATGAAGATCACATAATTCGCA 58.563 34.615 0.00 0.00 0.00 5.10
145 146 8.093307 AGTAGATGAAGATCACATAATTCGCAT 58.907 33.333 0.00 0.00 0.00 4.73
146 147 7.741027 AGATGAAGATCACATAATTCGCATT 57.259 32.000 0.00 0.00 0.00 3.56
147 148 8.162878 AGATGAAGATCACATAATTCGCATTT 57.837 30.769 0.00 0.00 0.00 2.32
148 149 8.627403 AGATGAAGATCACATAATTCGCATTTT 58.373 29.630 0.00 0.00 0.00 1.82
149 150 7.974243 TGAAGATCACATAATTCGCATTTTG 57.026 32.000 0.00 0.00 0.00 2.44
150 151 7.537715 TGAAGATCACATAATTCGCATTTTGT 58.462 30.769 0.00 0.00 35.59 2.83
151 152 8.028354 TGAAGATCACATAATTCGCATTTTGTT 58.972 29.630 1.53 0.00 33.64 2.83
152 153 9.502145 GAAGATCACATAATTCGCATTTTGTTA 57.498 29.630 1.53 0.00 33.64 2.41
154 155 9.669353 AGATCACATAATTCGCATTTTGTTATC 57.331 29.630 13.48 13.48 36.34 1.75
155 156 7.890879 TCACATAATTCGCATTTTGTTATCG 57.109 32.000 1.53 0.00 33.64 2.92
156 157 7.468441 TCACATAATTCGCATTTTGTTATCGT 58.532 30.769 1.53 0.00 33.64 3.73
157 158 7.965655 TCACATAATTCGCATTTTGTTATCGTT 59.034 29.630 1.53 0.00 33.64 3.85
158 159 8.043836 CACATAATTCGCATTTTGTTATCGTTG 58.956 33.333 1.53 0.00 33.64 4.10
159 160 7.753132 ACATAATTCGCATTTTGTTATCGTTGT 59.247 29.630 0.00 0.00 32.41 3.32
160 161 9.216087 CATAATTCGCATTTTGTTATCGTTGTA 57.784 29.630 0.00 0.00 0.00 2.41
161 162 9.776158 ATAATTCGCATTTTGTTATCGTTGTAA 57.224 25.926 0.00 0.00 0.00 2.41
162 163 8.682128 AATTCGCATTTTGTTATCGTTGTAAT 57.318 26.923 0.00 0.00 0.00 1.89
163 164 8.682128 ATTCGCATTTTGTTATCGTTGTAATT 57.318 26.923 0.00 0.00 0.00 1.40
164 165 9.776158 ATTCGCATTTTGTTATCGTTGTAATTA 57.224 25.926 0.00 0.00 0.00 1.40
165 166 9.776158 TTCGCATTTTGTTATCGTTGTAATTAT 57.224 25.926 0.00 0.00 0.00 1.28
183 184 9.826574 TGTAATTATACTCCAAGTATTGTGTCC 57.173 33.333 5.03 0.00 38.17 4.02
184 185 9.826574 GTAATTATACTCCAAGTATTGTGTCCA 57.173 33.333 5.03 0.00 46.99 4.02
185 186 8.732746 AATTATACTCCAAGTATTGTGTCCAC 57.267 34.615 5.03 0.00 46.99 4.02
186 187 7.490657 TTATACTCCAAGTATTGTGTCCACT 57.509 36.000 5.03 0.00 46.99 4.00
187 188 4.008074 ACTCCAAGTATTGTGTCCACTG 57.992 45.455 0.00 0.00 46.99 3.66
188 189 2.744202 CTCCAAGTATTGTGTCCACTGC 59.256 50.000 0.00 0.00 46.99 4.40
189 190 2.105649 TCCAAGTATTGTGTCCACTGCA 59.894 45.455 0.00 0.00 46.99 4.41
190 191 2.884012 CCAAGTATTGTGTCCACTGCAA 59.116 45.455 0.00 0.00 46.99 4.08
191 192 3.317711 CCAAGTATTGTGTCCACTGCAAA 59.682 43.478 0.00 0.00 46.99 3.68
192 193 4.202101 CCAAGTATTGTGTCCACTGCAAAA 60.202 41.667 0.00 0.00 46.99 2.44
193 194 5.347342 CAAGTATTGTGTCCACTGCAAAAA 58.653 37.500 0.00 0.00 42.34 1.94
232 233 9.813826 TGAGATCATATATCTACTCTCCAAACA 57.186 33.333 0.00 0.00 0.00 2.83
241 242 7.913674 ATCTACTCTCCAAACAAAGTCATTC 57.086 36.000 0.00 0.00 0.00 2.67
242 243 6.826668 TCTACTCTCCAAACAAAGTCATTCA 58.173 36.000 0.00 0.00 0.00 2.57
243 244 7.279615 TCTACTCTCCAAACAAAGTCATTCAA 58.720 34.615 0.00 0.00 0.00 2.69
244 245 6.966534 ACTCTCCAAACAAAGTCATTCAAT 57.033 33.333 0.00 0.00 0.00 2.57
245 246 9.219603 CTACTCTCCAAACAAAGTCATTCAATA 57.780 33.333 0.00 0.00 0.00 1.90
246 247 7.875971 ACTCTCCAAACAAAGTCATTCAATAC 58.124 34.615 0.00 0.00 0.00 1.89
247 248 7.502226 ACTCTCCAAACAAAGTCATTCAATACA 59.498 33.333 0.00 0.00 0.00 2.29
248 249 8.408043 TCTCCAAACAAAGTCATTCAATACAT 57.592 30.769 0.00 0.00 0.00 2.29
249 250 8.298854 TCTCCAAACAAAGTCATTCAATACATG 58.701 33.333 0.00 0.00 0.00 3.21
250 251 7.950512 TCCAAACAAAGTCATTCAATACATGT 58.049 30.769 2.69 2.69 0.00 3.21
251 252 9.072375 TCCAAACAAAGTCATTCAATACATGTA 57.928 29.630 8.27 8.27 0.00 2.29
252 253 9.859427 CCAAACAAAGTCATTCAATACATGTAT 57.141 29.630 12.75 12.75 0.00 2.29
270 271 7.834068 CATGTATTACCATGTACATAGCCTC 57.166 40.000 8.32 0.00 38.98 4.70
271 272 7.615403 CATGTATTACCATGTACATAGCCTCT 58.385 38.462 8.32 0.00 38.98 3.69
272 273 7.228314 TGTATTACCATGTACATAGCCTCTC 57.772 40.000 8.32 0.00 0.00 3.20
273 274 6.780522 TGTATTACCATGTACATAGCCTCTCA 59.219 38.462 8.32 1.65 0.00 3.27
274 275 6.747414 ATTACCATGTACATAGCCTCTCAA 57.253 37.500 8.32 0.00 0.00 3.02
275 276 4.408182 ACCATGTACATAGCCTCTCAAC 57.592 45.455 8.32 0.00 0.00 3.18
276 277 3.774766 ACCATGTACATAGCCTCTCAACA 59.225 43.478 8.32 0.00 0.00 3.33
277 278 4.225042 ACCATGTACATAGCCTCTCAACAA 59.775 41.667 8.32 0.00 0.00 2.83
278 279 4.572389 CCATGTACATAGCCTCTCAACAAC 59.428 45.833 8.32 0.00 0.00 3.32
279 280 3.845178 TGTACATAGCCTCTCAACAACG 58.155 45.455 0.00 0.00 0.00 4.10
280 281 3.257375 TGTACATAGCCTCTCAACAACGT 59.743 43.478 0.00 0.00 0.00 3.99
281 282 2.688507 ACATAGCCTCTCAACAACGTG 58.311 47.619 0.00 0.00 0.00 4.49
282 283 1.394917 CATAGCCTCTCAACAACGTGC 59.605 52.381 0.00 0.00 0.00 5.34
283 284 0.666274 TAGCCTCTCAACAACGTGCG 60.666 55.000 0.00 0.00 0.00 5.34
284 285 2.954753 GCCTCTCAACAACGTGCGG 61.955 63.158 0.00 0.00 0.00 5.69
285 286 2.317609 CCTCTCAACAACGTGCGGG 61.318 63.158 0.00 0.00 0.00 6.13
286 287 1.594293 CTCTCAACAACGTGCGGGT 60.594 57.895 0.00 0.00 0.00 5.28
287 288 0.319211 CTCTCAACAACGTGCGGGTA 60.319 55.000 0.00 0.00 0.00 3.69
288 289 0.598158 TCTCAACAACGTGCGGGTAC 60.598 55.000 0.00 0.00 0.00 3.34
324 325 8.997621 TGGAGTATAAAGTAACTTGATGTCAC 57.002 34.615 0.00 0.00 0.00 3.67
325 326 8.038944 TGGAGTATAAAGTAACTTGATGTCACC 58.961 37.037 0.00 0.00 0.00 4.02
326 327 8.038944 GGAGTATAAAGTAACTTGATGTCACCA 58.961 37.037 0.00 0.00 0.00 4.17
327 328 8.773404 AGTATAAAGTAACTTGATGTCACCAC 57.227 34.615 0.00 0.00 0.00 4.16
328 329 6.721571 ATAAAGTAACTTGATGTCACCACG 57.278 37.500 0.00 0.00 0.00 4.94
329 330 2.413837 AGTAACTTGATGTCACCACGC 58.586 47.619 0.00 0.00 0.00 5.34
330 331 2.037251 AGTAACTTGATGTCACCACGCT 59.963 45.455 0.00 0.00 0.00 5.07
331 332 1.967319 AACTTGATGTCACCACGCTT 58.033 45.000 0.00 0.00 0.00 4.68
332 333 1.229428 ACTTGATGTCACCACGCTTG 58.771 50.000 0.00 0.00 0.00 4.01
333 334 1.229428 CTTGATGTCACCACGCTTGT 58.771 50.000 0.00 0.00 0.00 3.16
334 335 1.603802 CTTGATGTCACCACGCTTGTT 59.396 47.619 0.00 0.00 0.00 2.83
335 336 0.943673 TGATGTCACCACGCTTGTTG 59.056 50.000 0.00 0.00 0.00 3.33
336 337 0.944386 GATGTCACCACGCTTGTTGT 59.056 50.000 0.00 0.00 0.00 3.32
337 338 0.662619 ATGTCACCACGCTTGTTGTG 59.337 50.000 0.00 0.00 39.84 3.33
338 339 1.298339 GTCACCACGCTTGTTGTGC 60.298 57.895 0.00 0.00 38.70 4.57
339 340 1.451207 TCACCACGCTTGTTGTGCT 60.451 52.632 0.00 0.00 38.70 4.40
340 341 1.029408 TCACCACGCTTGTTGTGCTT 61.029 50.000 0.00 0.00 38.70 3.91
341 342 0.179140 CACCACGCTTGTTGTGCTTT 60.179 50.000 0.00 0.00 33.18 3.51
342 343 0.100503 ACCACGCTTGTTGTGCTTTC 59.899 50.000 0.00 0.00 36.01 2.62
343 344 0.594796 CCACGCTTGTTGTGCTTTCC 60.595 55.000 0.00 0.00 36.01 3.13
344 345 0.381801 CACGCTTGTTGTGCTTTCCT 59.618 50.000 0.00 0.00 0.00 3.36
345 346 0.381801 ACGCTTGTTGTGCTTTCCTG 59.618 50.000 0.00 0.00 0.00 3.86
346 347 0.936297 CGCTTGTTGTGCTTTCCTGC 60.936 55.000 0.00 0.00 0.00 4.85
347 348 0.102844 GCTTGTTGTGCTTTCCTGCA 59.897 50.000 0.00 0.00 41.05 4.41
348 349 1.866880 GCTTGTTGTGCTTTCCTGCAG 60.867 52.381 6.78 6.78 44.20 4.41
349 350 1.677576 CTTGTTGTGCTTTCCTGCAGA 59.322 47.619 17.39 0.00 44.20 4.26
350 351 1.311859 TGTTGTGCTTTCCTGCAGAG 58.688 50.000 17.39 5.84 44.20 3.35
351 352 1.312815 GTTGTGCTTTCCTGCAGAGT 58.687 50.000 17.39 0.00 44.20 3.24
352 353 1.002033 GTTGTGCTTTCCTGCAGAGTG 60.002 52.381 17.39 0.00 44.20 3.51
353 354 0.469494 TGTGCTTTCCTGCAGAGTGA 59.531 50.000 17.39 0.20 44.20 3.41
354 355 1.072806 TGTGCTTTCCTGCAGAGTGAT 59.927 47.619 17.39 0.00 44.20 3.06
355 356 1.467734 GTGCTTTCCTGCAGAGTGATG 59.532 52.381 17.39 0.00 44.20 3.07
356 357 1.348696 TGCTTTCCTGCAGAGTGATGA 59.651 47.619 17.39 0.00 38.12 2.92
357 358 2.224597 TGCTTTCCTGCAGAGTGATGAA 60.225 45.455 17.39 5.98 38.12 2.57
358 359 2.816087 GCTTTCCTGCAGAGTGATGAAA 59.184 45.455 17.39 13.63 0.00 2.69
359 360 3.254166 GCTTTCCTGCAGAGTGATGAAAA 59.746 43.478 17.39 0.52 0.00 2.29
360 361 4.261741 GCTTTCCTGCAGAGTGATGAAAAA 60.262 41.667 17.39 0.00 0.00 1.94
375 376 3.930400 AAAAAGGCGTGTTCCGTTC 57.070 47.368 0.00 0.00 39.32 3.95
376 377 1.385528 AAAAAGGCGTGTTCCGTTCT 58.614 45.000 0.00 0.00 39.32 3.01
377 378 1.385528 AAAAGGCGTGTTCCGTTCTT 58.614 45.000 0.00 0.00 39.32 2.52
378 379 0.942252 AAAGGCGTGTTCCGTTCTTC 59.058 50.000 0.00 0.00 39.32 2.87
379 380 1.219522 AAGGCGTGTTCCGTTCTTCG 61.220 55.000 0.00 0.00 39.32 3.79
380 381 1.952635 GGCGTGTTCCGTTCTTCGT 60.953 57.895 0.00 0.00 39.32 3.85
381 382 1.200839 GCGTGTTCCGTTCTTCGTG 59.799 57.895 0.00 0.00 39.32 4.35
382 383 1.200839 CGTGTTCCGTTCTTCGTGC 59.799 57.895 0.00 0.00 37.94 5.34
383 384 1.568025 GTGTTCCGTTCTTCGTGCC 59.432 57.895 0.00 0.00 37.94 5.01
384 385 1.952133 TGTTCCGTTCTTCGTGCCG 60.952 57.895 0.00 0.00 37.94 5.69
385 386 3.039588 TTCCGTTCTTCGTGCCGC 61.040 61.111 0.00 0.00 37.94 6.53
404 405 2.258286 GGCAATTGGCACGTCCAC 59.742 61.111 25.76 0.00 46.55 4.02
405 406 2.560119 GGCAATTGGCACGTCCACA 61.560 57.895 25.76 0.00 46.55 4.17
406 407 1.371635 GCAATTGGCACGTCCACAC 60.372 57.895 7.72 0.00 46.55 3.82
436 438 3.888930 GTCCAAAATCAACCCTGAACTCA 59.111 43.478 0.00 0.00 34.49 3.41
439 441 6.378280 GTCCAAAATCAACCCTGAACTCATAT 59.622 38.462 0.00 0.00 34.49 1.78
456 458 5.859114 ACTCATATGCGTTAGCTAAATCGAG 59.141 40.000 17.76 13.94 45.42 4.04
490 492 1.303236 CCCGGAAATCAGCACACCA 60.303 57.895 0.73 0.00 0.00 4.17
567 569 4.019411 TGATGACATGGCAGAAGGAAACTA 60.019 41.667 7.63 0.00 42.68 2.24
575 577 2.685388 GCAGAAGGAAACTAGGATTGGC 59.315 50.000 0.00 0.00 42.68 4.52
577 579 2.242452 AGAAGGAAACTAGGATTGGCCC 59.758 50.000 0.00 0.00 42.68 5.80
578 580 1.681229 AGGAAACTAGGATTGGCCCA 58.319 50.000 0.00 0.00 40.61 5.36
581 583 3.395941 AGGAAACTAGGATTGGCCCATAG 59.604 47.826 0.00 0.00 40.61 2.23
582 584 2.959465 AACTAGGATTGGCCCATAGC 57.041 50.000 0.00 0.00 42.60 2.97
583 585 0.687354 ACTAGGATTGGCCCATAGCG 59.313 55.000 0.00 0.00 45.17 4.26
584 586 0.674895 CTAGGATTGGCCCATAGCGC 60.675 60.000 0.00 0.00 45.17 5.92
667 684 1.973812 GTGGAGAGGCAGCCCAAAC 60.974 63.158 8.22 0.00 0.00 2.93
718 737 1.602237 GGGTTTCCCATGCTCGAGA 59.398 57.895 18.75 1.31 44.65 4.04
722 741 1.066858 GTTTCCCATGCTCGAGAGACA 60.067 52.381 18.75 4.98 35.39 3.41
782 801 3.106407 GTGACAGCAGGACGACGC 61.106 66.667 0.00 0.00 0.00 5.19
800 819 1.791662 CGCGGCGTTGAAGGTAATT 59.208 52.632 15.36 0.00 0.00 1.40
809 828 5.292589 GGCGTTGAAGGTAATTTCTTCGATA 59.707 40.000 11.79 2.58 42.43 2.92
833 852 1.079543 CTCCTCTGGTCACCGCAAG 60.080 63.158 0.00 0.00 0.00 4.01
849 868 1.129437 GCAAGTTAGGCTCTCTTTGCG 59.871 52.381 0.00 0.00 0.00 4.85
864 883 4.444536 TCTTTGCGTTGTTAGTGTTAGGT 58.555 39.130 0.00 0.00 0.00 3.08
896 915 0.321346 AAATTGGGGCTTTTCGGCAG 59.679 50.000 0.00 0.00 40.61 4.85
919 939 4.793678 GCGGTAAAGTTAGGTTTTGGGTTG 60.794 45.833 0.00 0.00 0.00 3.77
920 940 4.579753 CGGTAAAGTTAGGTTTTGGGTTGA 59.420 41.667 0.00 0.00 0.00 3.18
1018 1039 1.613925 TCATGGATCCGACGGAGATTC 59.386 52.381 22.99 14.64 34.05 2.52
1058 1079 0.393537 GGAGGGCAGTTCATCCACAG 60.394 60.000 0.00 0.00 0.00 3.66
1141 1170 7.816995 ACAAGTTGTCATTGCAAGAAGTTAAAA 59.183 29.630 4.94 0.00 0.00 1.52
1145 1174 4.382754 GTCATTGCAAGAAGTTAAAAGGCG 59.617 41.667 4.94 0.00 0.00 5.52
1184 1213 3.274288 AGTTGAAGGAATCGATGAAGCC 58.726 45.455 0.00 0.00 0.00 4.35
1203 1232 6.269077 TGAAGCCGTATTTTCTATATCCTGGA 59.731 38.462 0.00 0.00 0.00 3.86
1237 1266 5.727515 GCTGATGGTTTGCTGTTTTTGTTTC 60.728 40.000 0.00 0.00 0.00 2.78
1245 1274 5.321959 TGCTGTTTTTGTTTCATGACAGA 57.678 34.783 10.21 0.00 37.32 3.41
1282 1311 5.620206 TGTCAGACTACATTTGTGTTGGAT 58.380 37.500 1.31 0.00 0.00 3.41
1352 1381 1.816835 CATCAGCAGTGGCAGTGATTT 59.183 47.619 25.96 6.73 44.61 2.17
1355 1384 0.963962 AGCAGTGGCAGTGATTTTGG 59.036 50.000 25.96 0.00 44.61 3.28
1403 1432 8.896744 TGATGATGAATTTGAAGAACCTGATAC 58.103 33.333 0.00 0.00 0.00 2.24
1415 1444 8.144478 TGAAGAACCTGATACTATCATTAGTGC 58.856 37.037 0.00 0.00 39.08 4.40
1416 1445 7.603180 AGAACCTGATACTATCATTAGTGCA 57.397 36.000 0.00 0.00 39.08 4.57
1417 1446 7.665690 AGAACCTGATACTATCATTAGTGCAG 58.334 38.462 0.00 9.21 39.08 4.41
1418 1447 7.507277 AGAACCTGATACTATCATTAGTGCAGA 59.493 37.037 14.27 0.00 40.71 4.26
1419 1448 7.225784 ACCTGATACTATCATTAGTGCAGAG 57.774 40.000 14.27 9.63 40.71 3.35
1457 1492 2.544267 GTGGTGTGCTCACTCAACTTAC 59.456 50.000 17.68 0.42 43.41 2.34
1474 1509 6.267014 TCAACTTACTAGCAGTCCAGTTAAGT 59.733 38.462 10.65 0.00 32.88 2.24
1502 1537 6.292150 CCAGGTCAAGAAGAACTTTAGAAGT 58.708 40.000 0.00 0.00 43.38 3.01
1537 1572 3.511146 TCAAGTGCCAGATTCCCAATTTC 59.489 43.478 0.00 0.00 0.00 2.17
1559 1594 7.509141 TTCTAATTTCTCAAGTGTGCAATCA 57.491 32.000 0.00 0.00 0.00 2.57
1563 1598 5.833406 TTTCTCAAGTGTGCAATCAAGAA 57.167 34.783 0.00 0.00 0.00 2.52
1568 1603 4.276678 TCAAGTGTGCAATCAAGAAGAAGG 59.723 41.667 0.00 0.00 0.00 3.46
1573 1608 1.895131 GCAATCAAGAAGAAGGGCCAA 59.105 47.619 6.18 0.00 0.00 4.52
1576 1611 4.501071 CAATCAAGAAGAAGGGCCAATTG 58.499 43.478 6.18 0.00 0.00 2.32
1584 1619 2.041620 AGAAGGGCCAATTGAAGCACTA 59.958 45.455 11.26 0.00 43.52 2.74
1585 1620 2.134789 AGGGCCAATTGAAGCACTAG 57.865 50.000 9.42 0.00 42.17 2.57
1586 1621 1.635487 AGGGCCAATTGAAGCACTAGA 59.365 47.619 9.42 0.00 42.17 2.43
1587 1622 2.019984 GGGCCAATTGAAGCACTAGAG 58.980 52.381 7.12 0.00 0.00 2.43
1588 1623 2.019984 GGCCAATTGAAGCACTAGAGG 58.980 52.381 7.12 0.00 0.00 3.69
1589 1624 2.356125 GGCCAATTGAAGCACTAGAGGA 60.356 50.000 7.12 0.00 0.00 3.71
1590 1625 3.347216 GCCAATTGAAGCACTAGAGGAA 58.653 45.455 7.12 0.00 0.00 3.36
1591 1626 3.376546 GCCAATTGAAGCACTAGAGGAAG 59.623 47.826 7.12 0.00 0.00 3.46
1592 1627 4.583871 CCAATTGAAGCACTAGAGGAAGT 58.416 43.478 7.12 0.00 0.00 3.01
1593 1628 5.006386 CCAATTGAAGCACTAGAGGAAGTT 58.994 41.667 7.12 0.00 0.00 2.66
1594 1629 6.173339 CCAATTGAAGCACTAGAGGAAGTTA 58.827 40.000 7.12 0.00 0.00 2.24
1595 1630 6.655003 CCAATTGAAGCACTAGAGGAAGTTAA 59.345 38.462 7.12 0.00 0.00 2.01
1596 1631 7.337942 CCAATTGAAGCACTAGAGGAAGTTAAT 59.662 37.037 7.12 0.00 0.00 1.40
1597 1632 7.856145 ATTGAAGCACTAGAGGAAGTTAATG 57.144 36.000 0.00 0.00 0.00 1.90
1598 1633 6.360370 TGAAGCACTAGAGGAAGTTAATGT 57.640 37.500 0.00 0.00 0.00 2.71
1599 1634 6.769512 TGAAGCACTAGAGGAAGTTAATGTT 58.230 36.000 0.00 0.00 0.00 2.71
1600 1635 6.874134 TGAAGCACTAGAGGAAGTTAATGTTC 59.126 38.462 0.00 0.00 0.00 3.18
1601 1636 6.360370 AGCACTAGAGGAAGTTAATGTTCA 57.640 37.500 0.00 0.00 0.00 3.18
1602 1637 6.402222 AGCACTAGAGGAAGTTAATGTTCAG 58.598 40.000 0.00 0.00 0.00 3.02
1603 1638 6.211584 AGCACTAGAGGAAGTTAATGTTCAGA 59.788 38.462 0.00 0.00 0.00 3.27
1604 1639 6.874134 GCACTAGAGGAAGTTAATGTTCAGAA 59.126 38.462 0.00 0.00 0.00 3.02
1605 1640 7.550906 GCACTAGAGGAAGTTAATGTTCAGAAT 59.449 37.037 0.00 0.00 0.00 2.40
1608 1643 9.255304 CTAGAGGAAGTTAATGTTCAGAATAGC 57.745 37.037 3.68 0.00 0.00 2.97
1609 1644 7.624549 AGAGGAAGTTAATGTTCAGAATAGCA 58.375 34.615 0.00 0.00 0.00 3.49
1610 1645 7.550906 AGAGGAAGTTAATGTTCAGAATAGCAC 59.449 37.037 0.00 0.00 0.00 4.40
1611 1646 7.168219 AGGAAGTTAATGTTCAGAATAGCACA 58.832 34.615 0.00 0.00 0.00 4.57
1612 1647 7.665559 AGGAAGTTAATGTTCAGAATAGCACAA 59.334 33.333 0.00 0.00 0.00 3.33
1613 1648 7.965107 GGAAGTTAATGTTCAGAATAGCACAAG 59.035 37.037 0.00 0.00 0.00 3.16
1614 1649 8.621532 AAGTTAATGTTCAGAATAGCACAAGA 57.378 30.769 0.00 0.00 0.00 3.02
1615 1650 8.261492 AGTTAATGTTCAGAATAGCACAAGAG 57.739 34.615 0.00 0.00 0.00 2.85
1626 1661 1.345741 AGCACAAGAGCAGAGCAAGTA 59.654 47.619 0.00 0.00 36.85 2.24
1637 1672 5.065914 AGCAGAGCAAGTAAATGTTCAGAA 58.934 37.500 0.00 0.00 33.47 3.02
1643 1678 9.593134 AGAGCAAGTAAATGTTCAGAATAGTAG 57.407 33.333 0.00 0.00 33.47 2.57
1671 1706 4.082895 GCAGAGCAAGTCAATGTTCAGAAT 60.083 41.667 0.00 0.00 33.47 2.40
1674 1709 5.353678 AGAGCAAGTCAATGTTCAGAATAGC 59.646 40.000 0.00 0.00 33.47 2.97
1679 1714 6.492007 AGTCAATGTTCAGAATAGCACAAG 57.508 37.500 0.00 0.00 0.00 3.16
1692 1727 0.516439 GCACAAGAGCAGAGCAAGTC 59.484 55.000 0.00 0.00 0.00 3.01
1750 1824 5.776519 TGTTCAAAACAACATTGCAGTTC 57.223 34.783 0.00 0.00 38.72 3.01
1801 1875 3.939740 ACATGCCACATAGTGAGGATT 57.060 42.857 0.00 0.00 35.23 3.01
1968 3081 0.336737 GAGAGGAGAAGGAGTGGGGA 59.663 60.000 0.00 0.00 0.00 4.81
2039 3152 3.922171 AATGGTTAGGAGGAAGAGCAG 57.078 47.619 0.00 0.00 0.00 4.24
2060 3173 5.009010 GCAGGTATCCAAGATACAACAATGG 59.991 44.000 14.81 0.00 0.00 3.16
2063 3176 5.536161 GGTATCCAAGATACAACAATGGCAT 59.464 40.000 14.81 0.00 0.00 4.40
2124 3237 1.831580 AGAATCAGCTTGTGAAGGCC 58.168 50.000 0.00 0.00 39.19 5.19
2186 3300 4.290711 TCATGAAATCAGAGGCAGACAA 57.709 40.909 0.00 0.00 0.00 3.18
2187 3301 4.005650 TCATGAAATCAGAGGCAGACAAC 58.994 43.478 0.00 0.00 0.00 3.32
2250 3364 1.928868 ATGGAGCCAAAACCTCAAGG 58.071 50.000 0.00 0.00 42.17 3.61
2328 3442 2.139118 GAGAACAGACTTGTGACAGCC 58.861 52.381 0.00 0.00 37.67 4.85
2439 3553 5.627499 TGTTTGCTGATGTATCAACTTCC 57.373 39.130 0.00 0.00 36.18 3.46
2469 3583 3.760151 AGCATGCAAAGAAGCTTGTCATA 59.240 39.130 21.98 0.00 40.58 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.011329 AGACACTTTGAAGGTTATGTACGGA 59.989 40.000 0.00 0.00 0.00 4.69
1 2 5.235516 AGACACTTTGAAGGTTATGTACGG 58.764 41.667 0.00 0.00 0.00 4.02
2 3 6.422701 TGAAGACACTTTGAAGGTTATGTACG 59.577 38.462 0.00 0.00 0.00 3.67
3 4 7.724305 TGAAGACACTTTGAAGGTTATGTAC 57.276 36.000 0.00 0.00 0.00 2.90
5 6 9.167311 GATATGAAGACACTTTGAAGGTTATGT 57.833 33.333 0.00 0.00 0.00 2.29
6 7 8.331022 CGATATGAAGACACTTTGAAGGTTATG 58.669 37.037 0.00 0.00 0.00 1.90
7 8 7.495934 CCGATATGAAGACACTTTGAAGGTTAT 59.504 37.037 0.00 0.00 0.00 1.89
8 9 6.816640 CCGATATGAAGACACTTTGAAGGTTA 59.183 38.462 0.00 0.00 0.00 2.85
9 10 5.643777 CCGATATGAAGACACTTTGAAGGTT 59.356 40.000 0.00 0.00 0.00 3.50
10 11 5.046591 TCCGATATGAAGACACTTTGAAGGT 60.047 40.000 0.00 0.00 0.00 3.50
11 12 5.419542 TCCGATATGAAGACACTTTGAAGG 58.580 41.667 0.00 0.00 0.00 3.46
12 13 6.968131 TTCCGATATGAAGACACTTTGAAG 57.032 37.500 0.00 0.00 0.00 3.02
13 14 7.065803 GGATTTCCGATATGAAGACACTTTGAA 59.934 37.037 0.00 0.00 0.00 2.69
14 15 6.538742 GGATTTCCGATATGAAGACACTTTGA 59.461 38.462 0.00 0.00 0.00 2.69
15 16 6.540189 AGGATTTCCGATATGAAGACACTTTG 59.460 38.462 0.00 0.00 42.08 2.77
16 17 6.653989 AGGATTTCCGATATGAAGACACTTT 58.346 36.000 0.00 0.00 42.08 2.66
17 18 6.240549 AGGATTTCCGATATGAAGACACTT 57.759 37.500 0.00 0.00 42.08 3.16
18 19 5.878406 AGGATTTCCGATATGAAGACACT 57.122 39.130 0.00 0.00 42.08 3.55
19 20 7.332182 GGAATAGGATTTCCGATATGAAGACAC 59.668 40.741 0.00 0.00 42.08 3.67
20 21 7.386851 GGAATAGGATTTCCGATATGAAGACA 58.613 38.462 0.00 0.00 42.08 3.41
21 22 7.835634 GGAATAGGATTTCCGATATGAAGAC 57.164 40.000 0.00 0.00 42.08 3.01
32 33 4.138487 ACACACTCGGAATAGGATTTCC 57.862 45.455 0.00 0.00 41.54 3.13
33 34 6.496338 AAAACACACTCGGAATAGGATTTC 57.504 37.500 0.00 0.00 0.00 2.17
34 35 9.106070 GTATAAAACACACTCGGAATAGGATTT 57.894 33.333 0.00 0.00 0.00 2.17
35 36 8.262227 TGTATAAAACACACTCGGAATAGGATT 58.738 33.333 0.00 0.00 31.43 3.01
36 37 7.788026 TGTATAAAACACACTCGGAATAGGAT 58.212 34.615 0.00 0.00 31.43 3.24
37 38 7.172868 TGTATAAAACACACTCGGAATAGGA 57.827 36.000 0.00 0.00 31.43 2.94
38 39 7.709182 TGATGTATAAAACACACTCGGAATAGG 59.291 37.037 0.00 0.00 42.09 2.57
39 40 8.642908 TGATGTATAAAACACACTCGGAATAG 57.357 34.615 0.00 0.00 42.09 1.73
40 41 9.607988 ATTGATGTATAAAACACACTCGGAATA 57.392 29.630 0.00 0.00 42.09 1.75
41 42 7.915293 TTGATGTATAAAACACACTCGGAAT 57.085 32.000 0.00 0.00 42.09 3.01
42 43 7.915293 ATTGATGTATAAAACACACTCGGAA 57.085 32.000 0.00 0.00 42.09 4.30
43 44 9.607988 AATATTGATGTATAAAACACACTCGGA 57.392 29.630 0.00 0.00 42.09 4.55
72 73 9.856488 GACTTAAGTTATCTCATGTGACTTGTA 57.144 33.333 10.02 0.00 33.13 2.41
73 74 8.367911 TGACTTAAGTTATCTCATGTGACTTGT 58.632 33.333 10.02 0.00 33.13 3.16
74 75 8.763049 TGACTTAAGTTATCTCATGTGACTTG 57.237 34.615 10.02 0.00 33.13 3.16
117 118 8.768955 GCGAATTATGTGATCTTCATCTACTTT 58.231 33.333 7.11 0.00 0.00 2.66
118 119 7.928167 TGCGAATTATGTGATCTTCATCTACTT 59.072 33.333 7.11 0.22 0.00 2.24
119 120 7.436933 TGCGAATTATGTGATCTTCATCTACT 58.563 34.615 7.11 0.00 0.00 2.57
120 121 7.643528 TGCGAATTATGTGATCTTCATCTAC 57.356 36.000 7.11 0.00 0.00 2.59
121 122 8.837788 AATGCGAATTATGTGATCTTCATCTA 57.162 30.769 7.11 0.29 0.00 1.98
122 123 7.741027 AATGCGAATTATGTGATCTTCATCT 57.259 32.000 7.11 0.00 0.00 2.90
123 124 8.688184 CAAAATGCGAATTATGTGATCTTCATC 58.312 33.333 7.11 0.00 0.00 2.92
124 125 8.192774 ACAAAATGCGAATTATGTGATCTTCAT 58.807 29.630 0.00 1.91 0.00 2.57
125 126 7.537715 ACAAAATGCGAATTATGTGATCTTCA 58.462 30.769 0.00 0.00 0.00 3.02
126 127 7.975866 ACAAAATGCGAATTATGTGATCTTC 57.024 32.000 0.00 0.00 0.00 2.87
128 129 9.669353 GATAACAAAATGCGAATTATGTGATCT 57.331 29.630 0.00 0.00 29.69 2.75
129 130 8.621487 CGATAACAAAATGCGAATTATGTGATC 58.379 33.333 0.00 0.00 0.00 2.92
130 131 8.128582 ACGATAACAAAATGCGAATTATGTGAT 58.871 29.630 0.00 0.00 0.00 3.06
131 132 7.468441 ACGATAACAAAATGCGAATTATGTGA 58.532 30.769 0.00 0.00 0.00 3.58
132 133 7.663630 ACGATAACAAAATGCGAATTATGTG 57.336 32.000 0.00 0.00 0.00 3.21
133 134 7.753132 ACAACGATAACAAAATGCGAATTATGT 59.247 29.630 0.00 0.00 0.00 2.29
134 135 8.103101 ACAACGATAACAAAATGCGAATTATG 57.897 30.769 0.00 0.00 0.00 1.90
135 136 9.776158 TTACAACGATAACAAAATGCGAATTAT 57.224 25.926 0.00 0.00 0.00 1.28
136 137 9.776158 ATTACAACGATAACAAAATGCGAATTA 57.224 25.926 0.00 0.00 0.00 1.40
137 138 8.682128 ATTACAACGATAACAAAATGCGAATT 57.318 26.923 0.00 0.00 0.00 2.17
138 139 8.682128 AATTACAACGATAACAAAATGCGAAT 57.318 26.923 0.00 0.00 0.00 3.34
139 140 9.776158 ATAATTACAACGATAACAAAATGCGAA 57.224 25.926 0.00 0.00 0.00 4.70
157 158 9.826574 GGACACAATACTTGGAGTATAATTACA 57.173 33.333 1.35 0.00 40.32 2.41
158 159 9.826574 TGGACACAATACTTGGAGTATAATTAC 57.173 33.333 1.35 0.00 40.32 1.89
159 160 9.826574 GTGGACACAATACTTGGAGTATAATTA 57.173 33.333 1.35 0.00 40.32 1.40
160 161 8.548877 AGTGGACACAATACTTGGAGTATAATT 58.451 33.333 5.14 0.00 40.32 1.40
161 162 7.987458 CAGTGGACACAATACTTGGAGTATAAT 59.013 37.037 5.14 0.00 40.32 1.28
162 163 7.327975 CAGTGGACACAATACTTGGAGTATAA 58.672 38.462 5.14 0.00 40.32 0.98
163 164 6.629515 GCAGTGGACACAATACTTGGAGTATA 60.630 42.308 5.14 0.00 40.32 1.47
164 165 5.734720 CAGTGGACACAATACTTGGAGTAT 58.265 41.667 5.14 0.00 42.86 2.12
165 166 4.562757 GCAGTGGACACAATACTTGGAGTA 60.563 45.833 5.14 0.00 34.82 2.59
166 167 3.807209 GCAGTGGACACAATACTTGGAGT 60.807 47.826 5.14 0.00 34.12 3.85
167 168 2.744202 GCAGTGGACACAATACTTGGAG 59.256 50.000 5.14 0.00 34.12 3.86
168 169 2.105649 TGCAGTGGACACAATACTTGGA 59.894 45.455 5.14 0.00 34.12 3.53
169 170 2.503331 TGCAGTGGACACAATACTTGG 58.497 47.619 5.14 0.00 34.12 3.61
170 171 4.566545 TTTGCAGTGGACACAATACTTG 57.433 40.909 5.14 0.00 0.00 3.16
171 172 5.590530 TTTTTGCAGTGGACACAATACTT 57.409 34.783 5.14 0.00 0.00 2.24
206 207 9.813826 TGTTTGGAGAGTAGATATATGATCTCA 57.186 33.333 12.79 0.00 35.89 3.27
215 216 9.606631 GAATGACTTTGTTTGGAGAGTAGATAT 57.393 33.333 0.00 0.00 0.00 1.63
216 217 8.593679 TGAATGACTTTGTTTGGAGAGTAGATA 58.406 33.333 0.00 0.00 0.00 1.98
217 218 7.453393 TGAATGACTTTGTTTGGAGAGTAGAT 58.547 34.615 0.00 0.00 0.00 1.98
218 219 6.826668 TGAATGACTTTGTTTGGAGAGTAGA 58.173 36.000 0.00 0.00 0.00 2.59
219 220 7.496529 TTGAATGACTTTGTTTGGAGAGTAG 57.503 36.000 0.00 0.00 0.00 2.57
220 221 8.999431 GTATTGAATGACTTTGTTTGGAGAGTA 58.001 33.333 0.00 0.00 0.00 2.59
221 222 6.966534 ATTGAATGACTTTGTTTGGAGAGT 57.033 33.333 0.00 0.00 0.00 3.24
222 223 7.874940 TGTATTGAATGACTTTGTTTGGAGAG 58.125 34.615 0.00 0.00 0.00 3.20
223 224 7.815840 TGTATTGAATGACTTTGTTTGGAGA 57.184 32.000 0.00 0.00 0.00 3.71
224 225 8.084073 ACATGTATTGAATGACTTTGTTTGGAG 58.916 33.333 0.00 0.00 0.00 3.86
225 226 7.950512 ACATGTATTGAATGACTTTGTTTGGA 58.049 30.769 0.00 0.00 0.00 3.53
226 227 9.859427 ATACATGTATTGAATGACTTTGTTTGG 57.141 29.630 12.75 0.00 0.00 3.28
247 248 7.454694 TGAGAGGCTATGTACATGGTAATACAT 59.545 37.037 18.81 10.50 43.02 2.29
248 249 6.780522 TGAGAGGCTATGTACATGGTAATACA 59.219 38.462 18.81 11.31 35.82 2.29
249 250 7.228314 TGAGAGGCTATGTACATGGTAATAC 57.772 40.000 18.81 9.13 0.00 1.89
250 251 7.289084 TGTTGAGAGGCTATGTACATGGTAATA 59.711 37.037 18.81 0.00 0.00 0.98
251 252 6.099701 TGTTGAGAGGCTATGTACATGGTAAT 59.900 38.462 18.81 5.72 0.00 1.89
252 253 5.423931 TGTTGAGAGGCTATGTACATGGTAA 59.576 40.000 18.81 0.00 0.00 2.85
253 254 4.959839 TGTTGAGAGGCTATGTACATGGTA 59.040 41.667 18.81 0.00 0.00 3.25
254 255 3.774766 TGTTGAGAGGCTATGTACATGGT 59.225 43.478 18.81 0.00 0.00 3.55
255 256 4.406648 TGTTGAGAGGCTATGTACATGG 57.593 45.455 18.81 16.57 0.00 3.66
256 257 4.268644 CGTTGTTGAGAGGCTATGTACATG 59.731 45.833 18.81 9.42 0.00 3.21
257 258 4.081642 ACGTTGTTGAGAGGCTATGTACAT 60.082 41.667 13.93 13.93 0.00 2.29
258 259 3.257375 ACGTTGTTGAGAGGCTATGTACA 59.743 43.478 0.00 0.00 0.00 2.90
259 260 3.612860 CACGTTGTTGAGAGGCTATGTAC 59.387 47.826 0.00 0.00 0.00 2.90
260 261 3.845178 CACGTTGTTGAGAGGCTATGTA 58.155 45.455 0.00 0.00 0.00 2.29
261 262 2.688507 CACGTTGTTGAGAGGCTATGT 58.311 47.619 0.00 0.00 0.00 2.29
262 263 1.394917 GCACGTTGTTGAGAGGCTATG 59.605 52.381 0.00 0.00 0.00 2.23
263 264 1.726853 GCACGTTGTTGAGAGGCTAT 58.273 50.000 0.00 0.00 0.00 2.97
264 265 0.666274 CGCACGTTGTTGAGAGGCTA 60.666 55.000 0.00 0.00 0.00 3.93
265 266 1.956170 CGCACGTTGTTGAGAGGCT 60.956 57.895 0.00 0.00 0.00 4.58
266 267 2.551270 CGCACGTTGTTGAGAGGC 59.449 61.111 0.00 0.00 0.00 4.70
267 268 2.317609 CCCGCACGTTGTTGAGAGG 61.318 63.158 0.00 0.00 0.00 3.69
268 269 0.319211 TACCCGCACGTTGTTGAGAG 60.319 55.000 0.00 0.00 0.00 3.20
269 270 0.598158 GTACCCGCACGTTGTTGAGA 60.598 55.000 0.00 0.00 0.00 3.27
270 271 1.562575 GGTACCCGCACGTTGTTGAG 61.563 60.000 0.00 0.00 0.00 3.02
271 272 1.594836 GGTACCCGCACGTTGTTGA 60.595 57.895 0.00 0.00 0.00 3.18
272 273 1.231958 ATGGTACCCGCACGTTGTTG 61.232 55.000 10.07 0.00 0.00 3.33
273 274 0.952010 GATGGTACCCGCACGTTGTT 60.952 55.000 10.07 0.00 0.00 2.83
274 275 1.375013 GATGGTACCCGCACGTTGT 60.375 57.895 10.07 0.00 0.00 3.32
275 276 2.104253 GGATGGTACCCGCACGTTG 61.104 63.158 10.07 0.00 0.00 4.10
276 277 2.266689 GGATGGTACCCGCACGTT 59.733 61.111 10.07 0.00 0.00 3.99
277 278 2.998480 TGGATGGTACCCGCACGT 60.998 61.111 10.07 0.00 0.00 4.49
278 279 2.202878 CTGGATGGTACCCGCACG 60.203 66.667 10.07 0.00 0.00 5.34
279 280 0.322187 AAACTGGATGGTACCCGCAC 60.322 55.000 10.07 0.00 0.00 5.34
280 281 0.402504 AAAACTGGATGGTACCCGCA 59.597 50.000 10.07 0.00 0.00 5.69
281 282 0.808755 CAAAACTGGATGGTACCCGC 59.191 55.000 10.07 0.44 0.00 6.13
282 283 1.003812 TCCAAAACTGGATGGTACCCG 59.996 52.381 10.07 0.00 37.94 5.28
283 284 2.041216 ACTCCAAAACTGGATGGTACCC 59.959 50.000 10.07 0.00 37.34 3.69
284 285 3.434940 ACTCCAAAACTGGATGGTACC 57.565 47.619 4.43 4.43 37.34 3.34
285 286 7.827729 ACTTTATACTCCAAAACTGGATGGTAC 59.172 37.037 0.00 0.00 37.34 3.34
286 287 7.924541 ACTTTATACTCCAAAACTGGATGGTA 58.075 34.615 0.00 0.00 37.34 3.25
287 288 6.790319 ACTTTATACTCCAAAACTGGATGGT 58.210 36.000 0.00 0.00 37.34 3.55
288 289 8.674607 GTTACTTTATACTCCAAAACTGGATGG 58.325 37.037 0.00 0.00 37.34 3.51
289 290 9.449719 AGTTACTTTATACTCCAAAACTGGATG 57.550 33.333 0.00 0.00 37.34 3.51
291 292 9.280174 CAAGTTACTTTATACTCCAAAACTGGA 57.720 33.333 0.00 0.00 36.40 3.86
292 293 9.280174 TCAAGTTACTTTATACTCCAAAACTGG 57.720 33.333 0.00 0.00 0.00 4.00
298 299 9.431887 GTGACATCAAGTTACTTTATACTCCAA 57.568 33.333 0.00 0.00 34.16 3.53
299 300 8.038944 GGTGACATCAAGTTACTTTATACTCCA 58.961 37.037 0.00 0.00 36.96 3.86
300 301 8.038944 TGGTGACATCAAGTTACTTTATACTCC 58.961 37.037 0.00 3.19 36.96 3.85
301 302 8.870879 GTGGTGACATCAAGTTACTTTATACTC 58.129 37.037 0.00 0.00 46.14 2.59
302 303 7.544566 CGTGGTGACATCAAGTTACTTTATACT 59.455 37.037 0.00 0.00 46.14 2.12
303 304 7.672738 CGTGGTGACATCAAGTTACTTTATAC 58.327 38.462 0.00 0.00 46.14 1.47
304 305 6.311935 GCGTGGTGACATCAAGTTACTTTATA 59.688 38.462 3.54 0.00 46.14 0.98
305 306 5.121768 GCGTGGTGACATCAAGTTACTTTAT 59.878 40.000 3.54 0.00 46.14 1.40
306 307 4.449743 GCGTGGTGACATCAAGTTACTTTA 59.550 41.667 3.54 0.00 46.14 1.85
307 308 3.250040 GCGTGGTGACATCAAGTTACTTT 59.750 43.478 3.54 0.00 46.14 2.66
308 309 2.806244 GCGTGGTGACATCAAGTTACTT 59.194 45.455 3.54 0.00 46.14 2.24
309 310 2.037251 AGCGTGGTGACATCAAGTTACT 59.963 45.455 3.54 0.00 46.14 2.24
310 311 2.413837 AGCGTGGTGACATCAAGTTAC 58.586 47.619 3.54 0.00 46.14 2.50
311 312 2.805671 CAAGCGTGGTGACATCAAGTTA 59.194 45.455 3.54 0.00 46.14 2.24
312 313 1.603802 CAAGCGTGGTGACATCAAGTT 59.396 47.619 3.54 0.00 46.14 2.66
313 314 1.229428 CAAGCGTGGTGACATCAAGT 58.771 50.000 3.54 0.00 46.14 3.16
314 315 1.229428 ACAAGCGTGGTGACATCAAG 58.771 50.000 4.26 0.00 46.14 3.02
315 316 1.333308 CAACAAGCGTGGTGACATCAA 59.667 47.619 12.77 0.00 46.17 2.57
316 317 0.943673 CAACAAGCGTGGTGACATCA 59.056 50.000 12.77 0.00 46.17 3.07
317 318 0.944386 ACAACAAGCGTGGTGACATC 59.056 50.000 24.82 0.00 46.17 3.06
318 319 3.094386 ACAACAAGCGTGGTGACAT 57.906 47.368 24.82 0.00 46.17 3.06
319 320 4.627788 ACAACAAGCGTGGTGACA 57.372 50.000 24.82 0.00 46.17 3.58
323 324 0.100503 GAAAGCACAACAAGCGTGGT 59.899 50.000 4.26 0.00 46.47 4.16
324 325 0.594796 GGAAAGCACAACAAGCGTGG 60.595 55.000 4.26 0.00 37.01 4.94
325 326 0.381801 AGGAAAGCACAACAAGCGTG 59.618 50.000 0.00 0.00 37.01 5.34
326 327 0.381801 CAGGAAAGCACAACAAGCGT 59.618 50.000 0.00 0.00 37.01 5.07
327 328 0.936297 GCAGGAAAGCACAACAAGCG 60.936 55.000 0.00 0.00 37.01 4.68
328 329 0.102844 TGCAGGAAAGCACAACAAGC 59.897 50.000 0.00 0.00 40.11 4.01
329 330 1.677576 TCTGCAGGAAAGCACAACAAG 59.322 47.619 15.13 0.00 40.11 3.16
330 331 1.677576 CTCTGCAGGAAAGCACAACAA 59.322 47.619 15.13 0.00 40.11 2.83
331 332 1.311859 CTCTGCAGGAAAGCACAACA 58.688 50.000 15.13 0.00 40.11 3.33
332 333 1.002033 CACTCTGCAGGAAAGCACAAC 60.002 52.381 15.13 0.00 40.11 3.32
333 334 1.134128 TCACTCTGCAGGAAAGCACAA 60.134 47.619 15.13 0.00 40.11 3.33
334 335 0.469494 TCACTCTGCAGGAAAGCACA 59.531 50.000 15.13 0.00 40.11 4.57
335 336 1.467734 CATCACTCTGCAGGAAAGCAC 59.532 52.381 15.13 0.00 40.11 4.40
336 337 1.348696 TCATCACTCTGCAGGAAAGCA 59.651 47.619 15.13 0.00 43.35 3.91
337 338 2.105006 TCATCACTCTGCAGGAAAGC 57.895 50.000 15.13 0.00 0.00 3.51
338 339 5.443185 TTTTTCATCACTCTGCAGGAAAG 57.557 39.130 15.13 6.62 0.00 2.62
384 385 4.776647 GACGTGCCAATTGCCCGC 62.777 66.667 0.00 0.00 45.32 6.13
385 386 4.114997 GGACGTGCCAATTGCCCG 62.115 66.667 0.00 4.11 46.92 6.13
386 387 2.988684 TGGACGTGCCAATTGCCC 60.989 61.111 4.04 0.00 45.87 5.36
393 394 2.871216 TTTTCCGTGTGGACGTGCCA 62.871 55.000 4.04 3.44 46.45 4.92
394 395 1.716826 TTTTTCCGTGTGGACGTGCC 61.717 55.000 4.04 0.43 46.45 5.01
395 396 0.316689 CTTTTTCCGTGTGGACGTGC 60.317 55.000 0.00 0.00 46.45 5.34
396 397 1.004292 GACTTTTTCCGTGTGGACGTG 60.004 52.381 0.00 0.00 46.45 4.49
397 398 1.292992 GACTTTTTCCGTGTGGACGT 58.707 50.000 0.00 0.00 46.45 4.34
398 399 0.584876 GGACTTTTTCCGTGTGGACG 59.415 55.000 0.00 0.00 46.45 4.79
406 407 9.716994 TTCAGGGTTGATTTTGGACTTTTTCCG 62.717 40.741 0.00 0.00 39.24 4.30
423 424 2.632377 ACGCATATGAGTTCAGGGTTG 58.368 47.619 6.97 0.00 0.00 3.77
436 438 3.927142 GGCTCGATTTAGCTAACGCATAT 59.073 43.478 5.45 0.00 42.37 1.78
439 441 1.567504 GGCTCGATTTAGCTAACGCA 58.432 50.000 5.45 0.00 42.37 5.24
456 458 0.811281 CGGGATTTGAAGTTGAGGGC 59.189 55.000 0.00 0.00 0.00 5.19
490 492 2.262637 TGGACCGGGATTAGTGAGTTT 58.737 47.619 6.32 0.00 0.00 2.66
567 569 2.113986 GCGCTATGGGCCAATCCT 59.886 61.111 11.89 0.00 37.74 3.24
575 577 4.856801 AACAGCCGGCGCTATGGG 62.857 66.667 23.20 8.28 46.25 4.00
577 579 2.819595 ACAACAGCCGGCGCTATG 60.820 61.111 23.20 20.41 46.25 2.23
578 580 2.819595 CACAACAGCCGGCGCTAT 60.820 61.111 23.20 5.96 46.25 2.97
584 586 3.582120 AACGTGCACAACAGCCGG 61.582 61.111 18.64 0.00 34.16 6.13
585 587 2.352229 CAACGTGCACAACAGCCG 60.352 61.111 18.64 3.06 35.37 5.52
586 588 2.026014 CCAACGTGCACAACAGCC 59.974 61.111 18.64 0.00 0.00 4.85
587 589 2.026014 CCCAACGTGCACAACAGC 59.974 61.111 18.64 0.00 0.00 4.40
588 590 2.026014 GCCCAACGTGCACAACAG 59.974 61.111 18.64 2.44 0.00 3.16
589 591 3.882013 CGCCCAACGTGCACAACA 61.882 61.111 18.64 0.00 36.87 3.33
667 684 3.866582 GGAGGGGATGGACTGCCG 61.867 72.222 0.00 0.00 35.85 5.69
702 721 1.066858 TGTCTCTCGAGCATGGGAAAC 60.067 52.381 7.81 0.00 0.00 2.78
703 722 1.205655 CTGTCTCTCGAGCATGGGAAA 59.794 52.381 7.81 0.00 0.00 3.13
709 728 1.472904 CCATTGCTGTCTCTCGAGCAT 60.473 52.381 7.81 0.00 44.51 3.79
718 737 2.270205 CCCTCGCCATTGCTGTCT 59.730 61.111 0.00 0.00 34.43 3.41
759 778 1.213013 GTCCTGCTGTCACGATCGT 59.787 57.895 16.60 16.60 0.00 3.73
782 801 0.167251 AAATTACCTTCAACGCCGCG 59.833 50.000 12.14 12.14 0.00 6.46
800 819 5.163077 ACCAGAGGAGGAGTATATCGAAGAA 60.163 44.000 0.00 0.00 43.58 2.52
809 828 1.410365 CGGTGACCAGAGGAGGAGTAT 60.410 57.143 1.11 0.00 0.00 2.12
833 852 2.143925 ACAACGCAAAGAGAGCCTAAC 58.856 47.619 0.00 0.00 0.00 2.34
849 868 5.584442 CCCACAAAACCTAACACTAACAAC 58.416 41.667 0.00 0.00 0.00 3.32
864 883 2.565841 CCCAATTTTTCGCCCACAAAA 58.434 42.857 0.00 0.00 0.00 2.44
896 915 2.886523 ACCCAAAACCTAACTTTACCGC 59.113 45.455 0.00 0.00 0.00 5.68
898 917 6.659745 ATCAACCCAAAACCTAACTTTACC 57.340 37.500 0.00 0.00 0.00 2.85
1018 1039 4.511454 TCCAAAGTGAAATCTGACGTTCAG 59.489 41.667 5.99 8.24 45.59 3.02
1035 1056 1.272092 TGGATGAACTGCCCTCCAAAG 60.272 52.381 0.00 0.00 34.91 2.77
1058 1079 4.821805 CCACATAATCCATAACAGGACCAC 59.178 45.833 0.00 0.00 41.30 4.16
1141 1170 1.608590 CACATGGTCTTTCAAACGCCT 59.391 47.619 0.00 0.00 0.00 5.52
1145 1174 4.338118 TCAACTCCACATGGTCTTTCAAAC 59.662 41.667 0.00 0.00 36.34 2.93
1203 1232 3.507622 GCAAACCATCAGCTAGTTCCTTT 59.492 43.478 0.00 0.00 0.00 3.11
1237 1266 5.645067 ACATATTCACACAACCTCTGTCATG 59.355 40.000 0.00 0.00 35.47 3.07
1245 1274 5.489792 AGTCTGACATATTCACACAACCT 57.510 39.130 10.88 0.00 0.00 3.50
1352 1381 6.389869 ACTTACCTCCATTATCTCATTCCCAA 59.610 38.462 0.00 0.00 0.00 4.12
1355 1384 7.067496 TCACTTACCTCCATTATCTCATTCC 57.933 40.000 0.00 0.00 0.00 3.01
1403 1432 4.558178 CTCTGCCTCTGCACTAATGATAG 58.442 47.826 0.00 0.00 44.23 2.08
1405 1434 2.485124 GCTCTGCCTCTGCACTAATGAT 60.485 50.000 0.00 0.00 44.23 2.45
1429 1464 1.065491 AGTGAGCACACCACTGTCAAA 60.065 47.619 10.88 0.00 46.99 2.69
1457 1492 3.181474 GGGCTACTTAACTGGACTGCTAG 60.181 52.174 0.00 0.00 0.00 3.42
1474 1509 2.621070 AGTTCTTCTTGACCTGGGCTA 58.379 47.619 0.00 0.00 0.00 3.93
1502 1537 2.357637 GGCACTTGAACAACAGCACTAA 59.642 45.455 0.00 0.00 0.00 2.24
1508 1543 3.304928 GGAATCTGGCACTTGAACAACAG 60.305 47.826 0.00 0.00 0.00 3.16
1537 1572 7.587629 TCTTGATTGCACACTTGAGAAATTAG 58.412 34.615 0.00 0.00 0.00 1.73
1559 1594 2.564504 GCTTCAATTGGCCCTTCTTCTT 59.435 45.455 5.42 0.00 0.00 2.52
1563 1598 1.203100 AGTGCTTCAATTGGCCCTTCT 60.203 47.619 5.42 0.00 0.00 2.85
1568 1603 2.019984 CCTCTAGTGCTTCAATTGGCC 58.980 52.381 5.42 0.00 0.00 5.36
1573 1608 7.398024 ACATTAACTTCCTCTAGTGCTTCAAT 58.602 34.615 0.00 0.00 0.00 2.57
1576 1611 6.874134 TGAACATTAACTTCCTCTAGTGCTTC 59.126 38.462 0.00 0.00 0.00 3.86
1583 1618 8.758829 TGCTATTCTGAACATTAACTTCCTCTA 58.241 33.333 0.00 0.00 0.00 2.43
1584 1619 7.550906 GTGCTATTCTGAACATTAACTTCCTCT 59.449 37.037 0.00 0.00 0.00 3.69
1585 1620 7.334421 TGTGCTATTCTGAACATTAACTTCCTC 59.666 37.037 0.00 0.00 0.00 3.71
1586 1621 7.168219 TGTGCTATTCTGAACATTAACTTCCT 58.832 34.615 0.00 0.00 0.00 3.36
1587 1622 7.377766 TGTGCTATTCTGAACATTAACTTCC 57.622 36.000 0.00 0.00 0.00 3.46
1588 1623 8.721478 TCTTGTGCTATTCTGAACATTAACTTC 58.279 33.333 0.00 0.00 0.00 3.01
1589 1624 8.621532 TCTTGTGCTATTCTGAACATTAACTT 57.378 30.769 0.00 0.00 0.00 2.66
1590 1625 7.148340 GCTCTTGTGCTATTCTGAACATTAACT 60.148 37.037 0.00 0.00 0.00 2.24
1591 1626 6.963805 GCTCTTGTGCTATTCTGAACATTAAC 59.036 38.462 0.00 0.00 0.00 2.01
1592 1627 6.654582 TGCTCTTGTGCTATTCTGAACATTAA 59.345 34.615 0.00 0.00 0.00 1.40
1593 1628 6.172630 TGCTCTTGTGCTATTCTGAACATTA 58.827 36.000 0.00 0.00 0.00 1.90
1594 1629 5.005740 TGCTCTTGTGCTATTCTGAACATT 58.994 37.500 0.00 0.00 0.00 2.71
1595 1630 4.582869 TGCTCTTGTGCTATTCTGAACAT 58.417 39.130 0.00 0.00 0.00 2.71
1596 1631 3.999001 CTGCTCTTGTGCTATTCTGAACA 59.001 43.478 0.00 0.00 0.00 3.18
1597 1632 4.248859 TCTGCTCTTGTGCTATTCTGAAC 58.751 43.478 0.00 0.00 0.00 3.18
1598 1633 4.502016 CTCTGCTCTTGTGCTATTCTGAA 58.498 43.478 0.00 0.00 0.00 3.02
1599 1634 3.678252 GCTCTGCTCTTGTGCTATTCTGA 60.678 47.826 0.00 0.00 0.00 3.27
1600 1635 2.608546 GCTCTGCTCTTGTGCTATTCTG 59.391 50.000 0.00 0.00 0.00 3.02
1601 1636 2.235650 TGCTCTGCTCTTGTGCTATTCT 59.764 45.455 0.00 0.00 0.00 2.40
1602 1637 2.625737 TGCTCTGCTCTTGTGCTATTC 58.374 47.619 0.00 0.00 0.00 1.75
1603 1638 2.775911 TGCTCTGCTCTTGTGCTATT 57.224 45.000 0.00 0.00 0.00 1.73
1604 1639 2.027377 ACTTGCTCTGCTCTTGTGCTAT 60.027 45.455 0.00 0.00 0.00 2.97
1605 1640 1.345741 ACTTGCTCTGCTCTTGTGCTA 59.654 47.619 0.00 0.00 0.00 3.49
1606 1641 0.108207 ACTTGCTCTGCTCTTGTGCT 59.892 50.000 0.00 0.00 0.00 4.40
1607 1642 1.800805 TACTTGCTCTGCTCTTGTGC 58.199 50.000 0.00 0.00 0.00 4.57
1608 1643 4.214971 ACATTTACTTGCTCTGCTCTTGTG 59.785 41.667 0.00 0.00 0.00 3.33
1609 1644 4.392940 ACATTTACTTGCTCTGCTCTTGT 58.607 39.130 0.00 0.00 0.00 3.16
1610 1645 5.049198 TGAACATTTACTTGCTCTGCTCTTG 60.049 40.000 0.00 0.00 0.00 3.02
1611 1646 5.065914 TGAACATTTACTTGCTCTGCTCTT 58.934 37.500 0.00 0.00 0.00 2.85
1612 1647 4.645535 TGAACATTTACTTGCTCTGCTCT 58.354 39.130 0.00 0.00 0.00 4.09
1613 1648 4.692625 TCTGAACATTTACTTGCTCTGCTC 59.307 41.667 0.00 0.00 0.00 4.26
1614 1649 4.645535 TCTGAACATTTACTTGCTCTGCT 58.354 39.130 0.00 0.00 0.00 4.24
1615 1650 5.362556 TTCTGAACATTTACTTGCTCTGC 57.637 39.130 0.00 0.00 0.00 4.26
1626 1661 8.535335 TCTGCTCTTCTACTATTCTGAACATTT 58.465 33.333 0.00 0.00 0.00 2.32
1637 1672 4.952957 TGACTTGCTCTGCTCTTCTACTAT 59.047 41.667 0.00 0.00 0.00 2.12
1643 1678 3.072944 ACATTGACTTGCTCTGCTCTTC 58.927 45.455 0.00 0.00 0.00 2.87
1671 1706 1.345741 ACTTGCTCTGCTCTTGTGCTA 59.654 47.619 0.00 0.00 0.00 3.49
1674 1709 1.875009 TGACTTGCTCTGCTCTTGTG 58.125 50.000 0.00 0.00 0.00 3.33
1679 1714 4.474113 CTGAAAATTGACTTGCTCTGCTC 58.526 43.478 0.00 0.00 0.00 4.26
1692 1727 7.603404 TCTGGTGCAATATTTTCCTGAAAATTG 59.397 33.333 19.61 15.21 45.67 2.32
1750 1824 5.082251 TCTTCATCAGAATCACTGTCTGG 57.918 43.478 1.85 0.00 45.86 3.86
1801 1875 5.067674 CCACAACTTCTGAATTTTCTCCACA 59.932 40.000 0.00 0.00 0.00 4.17
1929 3042 5.144100 TCTCCCTCTATCTGTTCTTCCATC 58.856 45.833 0.00 0.00 0.00 3.51
1995 3108 6.135819 TGCCCATCAGAATCTTCATCATAT 57.864 37.500 0.00 0.00 0.00 1.78
2039 3152 4.887071 TGCCATTGTTGTATCTTGGATACC 59.113 41.667 13.08 0.00 0.00 2.73
2186 3300 1.617322 TCCACACTTAGCTCTGACGT 58.383 50.000 0.00 0.00 0.00 4.34
2187 3301 2.534298 CATCCACACTTAGCTCTGACG 58.466 52.381 0.00 0.00 0.00 4.35
2250 3364 7.617041 AGTAATAATCTGAAACCTGCTTGTC 57.383 36.000 0.00 0.00 0.00 3.18
2328 3442 7.655236 CTCATATCTCTGAGCAATAACCTTG 57.345 40.000 0.00 0.00 36.53 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.