Multiple sequence alignment - TraesCS3B01G499600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G499600 chr3B 100.000 1562 0 0 1 1562 744390382 744391943 0.000000e+00 2885
1 TraesCS3B01G499600 chr3B 100.000 1425 0 0 1931 3355 744392312 744393736 0.000000e+00 2632
2 TraesCS3B01G499600 chr3B 97.326 1309 20 4 2062 3355 747504122 747502814 0.000000e+00 2209
3 TraesCS3B01G499600 chr3B 88.506 261 21 6 915 1172 744364753 744365007 1.170000e-79 307
4 TraesCS3B01G499600 chr3B 88.889 144 13 1 1372 1512 744391600 744391743 1.240000e-39 174
5 TraesCS3B01G499600 chr3B 88.889 144 13 1 1219 1362 744391753 744391893 1.240000e-39 174
6 TraesCS3B01G499600 chr3B 85.714 133 12 4 1935 2064 744365673 744365801 2.100000e-27 134
7 TraesCS3B01G499600 chr3B 95.833 72 3 0 779 850 744362399 744362470 2.110000e-22 117
8 TraesCS3B01G499600 chr5D 92.635 611 41 3 3 609 34795202 34795812 0.000000e+00 876
9 TraesCS3B01G499600 chr7A 90.445 607 53 2 3 605 718372443 718371838 0.000000e+00 795
10 TraesCS3B01G499600 chr1A 89.934 606 58 2 3 605 13173419 13174024 0.000000e+00 778
11 TraesCS3B01G499600 chr4B 89.836 610 55 4 1 604 590064342 590063734 0.000000e+00 776
12 TraesCS3B01G499600 chr6B 89.274 606 62 2 3 605 334467494 334468099 0.000000e+00 756
13 TraesCS3B01G499600 chrUn 88.889 603 64 2 6 605 71387585 71386983 0.000000e+00 739
14 TraesCS3B01G499600 chr6A 88.284 606 68 2 3 605 73647832 73648437 0.000000e+00 723
15 TraesCS3B01G499600 chr7B 88.013 609 70 2 3 608 12778372 12778980 0.000000e+00 717
16 TraesCS3B01G499600 chr2A 87.624 606 72 2 3 605 679880326 679880931 0.000000e+00 701
17 TraesCS3B01G499600 chr3D 89.256 363 30 5 853 1212 560216510 560216866 2.370000e-121 446
18 TraesCS3B01G499600 chr3A 81.651 436 50 11 785 1215 696313135 696313545 5.360000e-88 335
19 TraesCS3B01G499600 chr3A 85.145 276 27 9 2473 2735 696314493 696314767 1.530000e-68 270
20 TraesCS3B01G499600 chr3A 95.489 133 6 0 2771 2903 696314763 696314895 2.620000e-51 213
21 TraesCS3B01G499600 chr3A 94.872 117 5 1 3240 3355 696314897 696315013 7.390000e-42 182
22 TraesCS3B01G499600 chr3A 80.400 250 25 18 2158 2393 696314111 696314350 5.760000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G499600 chr3B 744390382 744393736 3354 False 1466.25 2885 94.4445 1 3355 4 chr3B.!!$F2 3354
1 TraesCS3B01G499600 chr3B 747502814 747504122 1308 True 2209.00 2209 97.3260 2062 3355 1 chr3B.!!$R1 1293
2 TraesCS3B01G499600 chr5D 34795202 34795812 610 False 876.00 876 92.6350 3 609 1 chr5D.!!$F1 606
3 TraesCS3B01G499600 chr7A 718371838 718372443 605 True 795.00 795 90.4450 3 605 1 chr7A.!!$R1 602
4 TraesCS3B01G499600 chr1A 13173419 13174024 605 False 778.00 778 89.9340 3 605 1 chr1A.!!$F1 602
5 TraesCS3B01G499600 chr4B 590063734 590064342 608 True 776.00 776 89.8360 1 604 1 chr4B.!!$R1 603
6 TraesCS3B01G499600 chr6B 334467494 334468099 605 False 756.00 756 89.2740 3 605 1 chr6B.!!$F1 602
7 TraesCS3B01G499600 chrUn 71386983 71387585 602 True 739.00 739 88.8890 6 605 1 chrUn.!!$R1 599
8 TraesCS3B01G499600 chr6A 73647832 73648437 605 False 723.00 723 88.2840 3 605 1 chr6A.!!$F1 602
9 TraesCS3B01G499600 chr7B 12778372 12778980 608 False 717.00 717 88.0130 3 608 1 chr7B.!!$F1 605
10 TraesCS3B01G499600 chr2A 679880326 679880931 605 False 701.00 701 87.6240 3 605 1 chr2A.!!$F1 602
11 TraesCS3B01G499600 chr3A 696313135 696315013 1878 False 233.80 335 87.5114 785 3355 5 chr3A.!!$F1 2570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
685 692 0.030638 CCCGTTCAACCACTTTGCTG 59.969 55.0 0.0 0.0 34.88 4.41 F
880 891 0.035458 AACAGCGAACAAGCCTAGCT 59.965 50.0 0.0 0.0 42.56 3.32 F
1448 1459 0.108585 GGTGTTCTGGTTGAGCCTCA 59.891 55.0 0.0 0.0 38.35 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 1974 0.380733 CAGCGCATCTGCACATGAAT 59.619 50.0 11.47 0.0 42.21 2.57 R
2297 2461 0.437295 CGAACGTGGAATTGTCGACC 59.563 55.0 14.12 0.0 0.00 4.79 R
2925 3173 1.237285 ACATTCCTTGCGACAGCCAC 61.237 55.0 0.00 0.0 44.33 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.376008 CGATGAGTTTTGTGAACAGGTACG 60.376 45.833 0.00 0.00 0.00 3.67
80 81 0.036105 TACGAGACCTACACAGCCGA 60.036 55.000 0.00 0.00 0.00 5.54
83 84 2.506438 GACCTACACAGCCGACGC 60.506 66.667 0.00 0.00 0.00 5.19
170 171 1.056660 TTCTCGCCAAGGAGGAACTT 58.943 50.000 0.00 0.00 41.55 2.66
217 218 1.216990 AAGAGGGCAACTATCTGGGG 58.783 55.000 0.00 0.00 33.71 4.96
557 561 2.091541 ACCCGCCAGACATTATTTGTG 58.908 47.619 0.00 0.00 39.18 3.33
558 562 1.405105 CCCGCCAGACATTATTTGTGG 59.595 52.381 0.00 0.00 39.18 4.17
559 563 1.202290 CCGCCAGACATTATTTGTGGC 60.202 52.381 9.17 9.17 41.70 5.01
561 565 1.824230 GCCAGACATTATTTGTGGCCA 59.176 47.619 0.00 0.00 40.09 5.36
622 629 1.687563 AAAAAGCTAGCGTGGTTGGT 58.312 45.000 9.55 0.00 0.00 3.67
623 630 0.951558 AAAAGCTAGCGTGGTTGGTG 59.048 50.000 9.55 0.00 0.00 4.17
624 631 0.889186 AAAGCTAGCGTGGTTGGTGG 60.889 55.000 9.55 0.00 0.00 4.61
625 632 3.431725 GCTAGCGTGGTTGGTGGC 61.432 66.667 0.00 0.00 36.70 5.01
626 633 2.746277 CTAGCGTGGTTGGTGGCC 60.746 66.667 0.00 0.00 0.00 5.36
627 634 3.246112 TAGCGTGGTTGGTGGCCT 61.246 61.111 3.32 0.00 0.00 5.19
628 635 3.545124 TAGCGTGGTTGGTGGCCTG 62.545 63.158 3.32 0.00 0.00 4.85
630 637 4.579384 CGTGGTTGGTGGCCTGGT 62.579 66.667 3.32 0.00 0.00 4.00
631 638 2.912025 GTGGTTGGTGGCCTGGTG 60.912 66.667 3.32 0.00 0.00 4.17
632 639 4.912395 TGGTTGGTGGCCTGGTGC 62.912 66.667 3.32 0.00 40.16 5.01
633 640 4.912395 GGTTGGTGGCCTGGTGCA 62.912 66.667 3.32 0.00 43.89 4.57
634 641 2.837291 GTTGGTGGCCTGGTGCAA 60.837 61.111 3.32 0.00 43.89 4.08
635 642 2.042537 TTGGTGGCCTGGTGCAAA 60.043 55.556 3.32 0.00 43.89 3.68
636 643 1.459158 TTGGTGGCCTGGTGCAAAT 60.459 52.632 3.32 0.00 43.89 2.32
637 644 0.178950 TTGGTGGCCTGGTGCAAATA 60.179 50.000 3.32 0.00 43.89 1.40
638 645 0.178950 TGGTGGCCTGGTGCAAATAA 60.179 50.000 3.32 0.00 43.89 1.40
639 646 0.972883 GGTGGCCTGGTGCAAATAAA 59.027 50.000 3.32 0.00 43.89 1.40
640 647 1.337728 GGTGGCCTGGTGCAAATAAAC 60.338 52.381 3.32 0.00 43.89 2.01
641 648 0.600557 TGGCCTGGTGCAAATAAACG 59.399 50.000 3.32 0.00 43.89 3.60
642 649 0.108851 GGCCTGGTGCAAATAAACGG 60.109 55.000 0.00 0.00 43.89 4.44
643 650 0.108851 GCCTGGTGCAAATAAACGGG 60.109 55.000 0.00 0.00 40.77 5.28
644 651 0.108851 CCTGGTGCAAATAAACGGGC 60.109 55.000 0.00 0.00 0.00 6.13
645 652 0.108851 CTGGTGCAAATAAACGGGCC 60.109 55.000 0.00 0.00 0.00 5.80
646 653 0.827925 TGGTGCAAATAAACGGGCCA 60.828 50.000 4.39 0.00 0.00 5.36
647 654 0.108851 GGTGCAAATAAACGGGCCAG 60.109 55.000 4.39 1.85 0.00 4.85
648 655 0.735978 GTGCAAATAAACGGGCCAGC 60.736 55.000 4.39 0.00 0.00 4.85
649 656 1.516169 GCAAATAAACGGGCCAGCG 60.516 57.895 4.39 1.48 0.00 5.18
650 657 1.880186 CAAATAAACGGGCCAGCGT 59.120 52.632 4.39 2.30 0.00 5.07
651 658 0.179174 CAAATAAACGGGCCAGCGTC 60.179 55.000 4.39 0.00 0.00 5.19
652 659 0.322187 AAATAAACGGGCCAGCGTCT 60.322 50.000 4.39 0.00 0.00 4.18
653 660 0.743345 AATAAACGGGCCAGCGTCTC 60.743 55.000 4.39 0.00 0.00 3.36
654 661 1.614241 ATAAACGGGCCAGCGTCTCT 61.614 55.000 4.39 0.00 0.00 3.10
655 662 2.221906 TAAACGGGCCAGCGTCTCTC 62.222 60.000 4.39 0.00 0.00 3.20
658 665 4.500116 GGGCCAGCGTCTCTCGTC 62.500 72.222 4.39 0.00 42.13 4.20
659 666 3.749064 GGCCAGCGTCTCTCGTCA 61.749 66.667 0.00 0.00 42.13 4.35
660 667 2.505118 GCCAGCGTCTCTCGTCAC 60.505 66.667 0.00 0.00 42.13 3.67
661 668 2.179517 CCAGCGTCTCTCGTCACC 59.820 66.667 0.00 0.00 42.13 4.02
662 669 2.336478 CCAGCGTCTCTCGTCACCT 61.336 63.158 0.00 0.00 42.13 4.00
663 670 1.581954 CAGCGTCTCTCGTCACCTT 59.418 57.895 0.00 0.00 42.13 3.50
664 671 0.455295 CAGCGTCTCTCGTCACCTTC 60.455 60.000 0.00 0.00 42.13 3.46
665 672 0.606944 AGCGTCTCTCGTCACCTTCT 60.607 55.000 0.00 0.00 42.13 2.85
666 673 0.179184 GCGTCTCTCGTCACCTTCTC 60.179 60.000 0.00 0.00 42.13 2.87
667 674 0.448593 CGTCTCTCGTCACCTTCTCC 59.551 60.000 0.00 0.00 34.52 3.71
668 675 0.812549 GTCTCTCGTCACCTTCTCCC 59.187 60.000 0.00 0.00 0.00 4.30
669 676 0.677098 TCTCTCGTCACCTTCTCCCG 60.677 60.000 0.00 0.00 0.00 5.14
670 677 0.961358 CTCTCGTCACCTTCTCCCGT 60.961 60.000 0.00 0.00 0.00 5.28
671 678 0.538977 TCTCGTCACCTTCTCCCGTT 60.539 55.000 0.00 0.00 0.00 4.44
672 679 0.109226 CTCGTCACCTTCTCCCGTTC 60.109 60.000 0.00 0.00 0.00 3.95
673 680 0.824595 TCGTCACCTTCTCCCGTTCA 60.825 55.000 0.00 0.00 0.00 3.18
674 681 0.032952 CGTCACCTTCTCCCGTTCAA 59.967 55.000 0.00 0.00 0.00 2.69
675 682 1.509703 GTCACCTTCTCCCGTTCAAC 58.490 55.000 0.00 0.00 0.00 3.18
676 683 0.395312 TCACCTTCTCCCGTTCAACC 59.605 55.000 0.00 0.00 0.00 3.77
677 684 0.107831 CACCTTCTCCCGTTCAACCA 59.892 55.000 0.00 0.00 0.00 3.67
678 685 0.108019 ACCTTCTCCCGTTCAACCAC 59.892 55.000 0.00 0.00 0.00 4.16
679 686 0.396811 CCTTCTCCCGTTCAACCACT 59.603 55.000 0.00 0.00 0.00 4.00
680 687 1.202770 CCTTCTCCCGTTCAACCACTT 60.203 52.381 0.00 0.00 0.00 3.16
681 688 2.572290 CTTCTCCCGTTCAACCACTTT 58.428 47.619 0.00 0.00 0.00 2.66
682 689 1.961793 TCTCCCGTTCAACCACTTTG 58.038 50.000 0.00 0.00 36.42 2.77
683 690 0.310854 CTCCCGTTCAACCACTTTGC 59.689 55.000 0.00 0.00 34.88 3.68
684 691 0.106918 TCCCGTTCAACCACTTTGCT 60.107 50.000 0.00 0.00 34.88 3.91
685 692 0.030638 CCCGTTCAACCACTTTGCTG 59.969 55.000 0.00 0.00 34.88 4.41
686 693 0.594796 CCGTTCAACCACTTTGCTGC 60.595 55.000 0.00 0.00 34.88 5.25
687 694 0.594796 CGTTCAACCACTTTGCTGCC 60.595 55.000 0.00 0.00 34.88 4.85
688 695 0.594796 GTTCAACCACTTTGCTGCCG 60.595 55.000 0.00 0.00 34.88 5.69
689 696 2.348605 TTCAACCACTTTGCTGCCGC 62.349 55.000 0.00 0.00 34.88 6.53
690 697 3.964875 AACCACTTTGCTGCCGCG 61.965 61.111 0.00 0.00 39.65 6.46
708 715 3.057548 CCGGCATGTGCAGCAGAA 61.058 61.111 7.36 0.00 44.36 3.02
709 716 2.177531 CGGCATGTGCAGCAGAAC 59.822 61.111 7.36 0.00 44.36 3.01
710 717 2.619165 CGGCATGTGCAGCAGAACA 61.619 57.895 7.36 0.00 44.36 3.18
711 718 1.080974 GGCATGTGCAGCAGAACAC 60.081 57.895 7.36 0.00 44.36 3.32
712 719 1.521450 GGCATGTGCAGCAGAACACT 61.521 55.000 7.36 0.00 44.36 3.55
713 720 1.159285 GCATGTGCAGCAGAACACTA 58.841 50.000 0.00 0.00 35.69 2.74
714 721 1.129998 GCATGTGCAGCAGAACACTAG 59.870 52.381 0.00 0.00 35.69 2.57
715 722 1.129998 CATGTGCAGCAGAACACTAGC 59.870 52.381 0.00 0.00 35.69 3.42
716 723 0.394192 TGTGCAGCAGAACACTAGCT 59.606 50.000 0.00 0.00 39.63 3.32
717 724 1.618343 TGTGCAGCAGAACACTAGCTA 59.382 47.619 0.00 0.00 36.73 3.32
718 725 2.266554 GTGCAGCAGAACACTAGCTAG 58.733 52.381 19.44 19.44 36.73 3.42
719 726 1.205655 TGCAGCAGAACACTAGCTAGG 59.794 52.381 24.35 15.22 36.73 3.02
720 727 1.478510 GCAGCAGAACACTAGCTAGGA 59.521 52.381 24.35 0.00 36.73 2.94
721 728 2.102252 GCAGCAGAACACTAGCTAGGAT 59.898 50.000 24.35 9.33 36.73 3.24
722 729 3.715495 CAGCAGAACACTAGCTAGGATG 58.285 50.000 24.35 16.38 36.73 3.51
723 730 2.102252 AGCAGAACACTAGCTAGGATGC 59.898 50.000 24.35 22.21 36.73 3.91
724 731 2.159043 GCAGAACACTAGCTAGGATGCA 60.159 50.000 24.35 0.00 34.99 3.96
725 732 3.494048 GCAGAACACTAGCTAGGATGCAT 60.494 47.826 24.35 0.00 34.99 3.96
726 733 4.701765 CAGAACACTAGCTAGGATGCATT 58.298 43.478 24.35 8.98 34.99 3.56
727 734 4.749099 CAGAACACTAGCTAGGATGCATTC 59.251 45.833 24.35 16.03 34.99 2.67
728 735 3.760580 ACACTAGCTAGGATGCATTCC 57.239 47.619 24.35 3.72 45.85 3.01
741 748 2.747396 GCATTCCAAGGTGCAATTCA 57.253 45.000 0.00 0.00 40.94 2.57
742 749 3.255969 GCATTCCAAGGTGCAATTCAT 57.744 42.857 0.00 0.00 40.94 2.57
743 750 3.602483 GCATTCCAAGGTGCAATTCATT 58.398 40.909 0.00 0.00 40.94 2.57
744 751 4.757594 GCATTCCAAGGTGCAATTCATTA 58.242 39.130 0.00 0.00 40.94 1.90
745 752 4.807304 GCATTCCAAGGTGCAATTCATTAG 59.193 41.667 0.00 0.00 40.94 1.73
746 753 5.353938 CATTCCAAGGTGCAATTCATTAGG 58.646 41.667 0.00 0.00 0.00 2.69
747 754 2.760092 TCCAAGGTGCAATTCATTAGGC 59.240 45.455 0.00 0.00 0.00 3.93
748 755 2.496871 CCAAGGTGCAATTCATTAGGCA 59.503 45.455 0.00 0.00 0.00 4.75
749 756 3.429822 CCAAGGTGCAATTCATTAGGCAG 60.430 47.826 0.00 0.00 36.86 4.85
750 757 2.381911 AGGTGCAATTCATTAGGCAGG 58.618 47.619 0.00 0.00 36.86 4.85
751 758 2.025037 AGGTGCAATTCATTAGGCAGGA 60.025 45.455 0.00 0.00 36.86 3.86
752 759 2.360165 GGTGCAATTCATTAGGCAGGAG 59.640 50.000 0.00 0.00 36.86 3.69
753 760 2.026641 TGCAATTCATTAGGCAGGAGC 58.973 47.619 0.00 0.00 41.10 4.70
754 761 2.305009 GCAATTCATTAGGCAGGAGCT 58.695 47.619 0.00 0.00 41.70 4.09
755 762 2.292845 GCAATTCATTAGGCAGGAGCTC 59.707 50.000 4.71 4.71 41.70 4.09
756 763 2.883386 CAATTCATTAGGCAGGAGCTCC 59.117 50.000 26.22 26.22 41.70 4.70
757 764 1.583556 TTCATTAGGCAGGAGCTCCA 58.416 50.000 33.90 13.29 41.70 3.86
758 765 1.126488 TCATTAGGCAGGAGCTCCAG 58.874 55.000 33.90 27.23 41.70 3.86
759 766 0.534652 CATTAGGCAGGAGCTCCAGC 60.535 60.000 35.36 35.36 46.42 4.85
773 780 3.220222 CAGCCCTGGAGCGATACA 58.780 61.111 0.00 0.00 38.01 2.29
774 781 1.750930 CAGCCCTGGAGCGATACAT 59.249 57.895 0.00 0.00 38.01 2.29
775 782 0.969149 CAGCCCTGGAGCGATACATA 59.031 55.000 0.00 0.00 38.01 2.29
776 783 1.067283 CAGCCCTGGAGCGATACATAG 60.067 57.143 0.00 0.00 38.01 2.23
777 784 0.969894 GCCCTGGAGCGATACATAGT 59.030 55.000 0.00 0.00 0.00 2.12
778 785 1.344763 GCCCTGGAGCGATACATAGTT 59.655 52.381 0.00 0.00 0.00 2.24
779 786 2.868044 GCCCTGGAGCGATACATAGTTG 60.868 54.545 0.00 0.00 0.00 3.16
780 787 2.408050 CCTGGAGCGATACATAGTTGC 58.592 52.381 0.00 0.00 0.00 4.17
781 788 2.224042 CCTGGAGCGATACATAGTTGCA 60.224 50.000 0.00 0.00 0.00 4.08
782 789 2.797156 CTGGAGCGATACATAGTTGCAC 59.203 50.000 0.00 0.00 0.00 4.57
783 790 1.787155 GGAGCGATACATAGTTGCACG 59.213 52.381 0.00 0.00 0.00 5.34
833 844 3.040147 ACGTGGCAGCATATATACACC 57.960 47.619 0.00 0.00 0.00 4.16
838 849 3.645687 TGGCAGCATATATACACCTGTCA 59.354 43.478 8.51 8.51 35.97 3.58
839 850 4.248859 GGCAGCATATATACACCTGTCAG 58.751 47.826 0.00 0.00 0.00 3.51
844 855 1.119684 ATATACACCTGTCAGCGGCA 58.880 50.000 1.45 0.00 0.00 5.69
857 868 4.641645 CGGCAGCCCAAGTCACCA 62.642 66.667 5.63 0.00 0.00 4.17
874 885 0.040958 CCAGACAACAGCGAACAAGC 60.041 55.000 0.00 0.00 37.41 4.01
875 886 0.040958 CAGACAACAGCGAACAAGCC 60.041 55.000 0.00 0.00 38.01 4.35
876 887 0.179045 AGACAACAGCGAACAAGCCT 60.179 50.000 0.00 0.00 38.01 4.58
877 888 1.070134 AGACAACAGCGAACAAGCCTA 59.930 47.619 0.00 0.00 38.01 3.93
878 889 1.461127 GACAACAGCGAACAAGCCTAG 59.539 52.381 0.00 0.00 38.01 3.02
879 890 0.166814 CAACAGCGAACAAGCCTAGC 59.833 55.000 0.00 0.00 38.01 3.42
880 891 0.035458 AACAGCGAACAAGCCTAGCT 59.965 50.000 0.00 0.00 42.56 3.32
881 892 0.895530 ACAGCGAACAAGCCTAGCTA 59.104 50.000 0.00 0.00 38.25 3.32
882 893 1.275291 ACAGCGAACAAGCCTAGCTAA 59.725 47.619 0.00 0.00 38.25 3.09
883 894 1.929836 CAGCGAACAAGCCTAGCTAAG 59.070 52.381 0.00 0.00 38.25 2.18
884 895 0.653114 GCGAACAAGCCTAGCTAAGC 59.347 55.000 6.19 6.19 38.25 3.09
885 896 1.291132 CGAACAAGCCTAGCTAAGCC 58.709 55.000 10.78 0.00 38.25 4.35
886 897 1.669604 GAACAAGCCTAGCTAAGCCC 58.330 55.000 10.78 0.00 38.25 5.19
887 898 1.210722 GAACAAGCCTAGCTAAGCCCT 59.789 52.381 10.78 0.00 38.25 5.19
888 899 0.833949 ACAAGCCTAGCTAAGCCCTC 59.166 55.000 10.78 0.00 38.25 4.30
889 900 1.127343 CAAGCCTAGCTAAGCCCTCT 58.873 55.000 10.78 0.00 38.25 3.69
911 922 1.228184 TCTCTCCCTATCGACGGCC 60.228 63.158 0.00 0.00 0.00 6.13
957 968 0.459759 GCCGGTCGTTTAGCTTAGCT 60.460 55.000 12.67 12.67 43.41 3.32
958 969 1.202336 GCCGGTCGTTTAGCTTAGCTA 60.202 52.381 10.21 10.21 40.44 3.32
992 1003 2.033141 TGCAGTGGAGCAAGGAGC 59.967 61.111 0.00 0.00 42.46 4.70
1003 1014 1.030457 GCAAGGAGCTTGGATCATGG 58.970 55.000 0.00 0.00 41.31 3.66
1005 1016 0.465097 AAGGAGCTTGGATCATGGCG 60.465 55.000 0.00 0.00 0.00 5.69
1009 1020 2.537560 GCTTGGATCATGGCGTCGG 61.538 63.158 0.00 0.00 0.00 4.79
1014 1025 2.586079 ATCATGGCGTCGGCGAAG 60.586 61.111 16.53 18.47 41.24 3.79
1030 1041 4.954970 AGCACGGCAACACTGGGG 62.955 66.667 0.00 0.00 0.00 4.96
1051 1062 2.112297 GCAAACCCTCGGTGTGGA 59.888 61.111 3.21 0.00 41.05 4.02
1053 1064 1.515521 GCAAACCCTCGGTGTGGAAG 61.516 60.000 3.21 0.00 41.05 3.46
1055 1066 1.057851 AAACCCTCGGTGTGGAAGGA 61.058 55.000 0.00 0.00 35.34 3.36
1060 1071 0.388649 CTCGGTGTGGAAGGACTTCG 60.389 60.000 6.02 0.00 40.37 3.79
1070 1081 1.874345 AAGGACTTCGACCGCGTCAT 61.874 55.000 4.92 0.00 38.98 3.06
1074 1085 2.497092 CTTCGACCGCGTCATCGTG 61.497 63.158 19.69 12.47 45.59 4.35
1076 1087 2.736343 TTCGACCGCGTCATCGTGTT 62.736 55.000 19.69 0.00 44.70 3.32
1077 1088 2.774951 CGACCGCGTCATCGTGTTC 61.775 63.158 4.92 0.00 44.70 3.18
1079 1090 2.803670 CCGCGTCATCGTGTTCGT 60.804 61.111 4.92 0.00 44.70 3.85
1080 1091 2.386491 CGCGTCATCGTGTTCGTG 59.614 61.111 0.00 0.00 41.80 4.35
1081 1092 2.093983 GCGTCATCGTGTTCGTGC 59.906 61.111 0.00 0.00 39.49 5.34
1085 1096 3.487202 CATCGTGTTCGTGCCCGG 61.487 66.667 0.00 0.00 38.33 5.73
1155 1166 1.106351 TCCAAGCCAGCGCAAAGAAA 61.106 50.000 11.47 0.00 37.52 2.52
1173 1184 4.436998 CACGGGACCTCGCACCTC 62.437 72.222 2.68 0.00 0.00 3.85
1257 1268 4.899239 GGCGACAGCGATGGAGGG 62.899 72.222 5.32 0.00 46.35 4.30
1258 1269 4.148825 GCGACAGCGATGGAGGGT 62.149 66.667 5.32 0.00 40.82 4.34
1259 1270 2.579201 CGACAGCGATGGAGGGTT 59.421 61.111 5.32 0.00 40.82 4.11
1260 1271 1.519455 CGACAGCGATGGAGGGTTC 60.519 63.158 5.32 0.00 40.82 3.62
1261 1272 1.596934 GACAGCGATGGAGGGTTCA 59.403 57.895 5.32 0.00 0.00 3.18
1262 1273 0.741221 GACAGCGATGGAGGGTTCAC 60.741 60.000 5.32 0.00 0.00 3.18
1263 1274 1.811266 CAGCGATGGAGGGTTCACG 60.811 63.158 0.00 0.00 0.00 4.35
1264 1275 1.982395 AGCGATGGAGGGTTCACGA 60.982 57.895 0.00 0.00 0.00 4.35
1265 1276 1.079405 GCGATGGAGGGTTCACGAA 60.079 57.895 0.00 0.00 0.00 3.85
1266 1277 1.359459 GCGATGGAGGGTTCACGAAC 61.359 60.000 1.12 1.12 40.45 3.95
1267 1278 0.246635 CGATGGAGGGTTCACGAACT 59.753 55.000 9.63 0.00 40.94 3.01
1268 1279 1.726853 GATGGAGGGTTCACGAACTG 58.273 55.000 9.63 0.00 40.94 3.16
1269 1280 0.324943 ATGGAGGGTTCACGAACTGG 59.675 55.000 9.63 0.00 40.94 4.00
1270 1281 1.671379 GGAGGGTTCACGAACTGGC 60.671 63.158 9.63 0.21 40.94 4.85
1271 1282 1.371558 GAGGGTTCACGAACTGGCT 59.628 57.895 9.63 0.00 40.94 4.75
1272 1283 0.951040 GAGGGTTCACGAACTGGCTG 60.951 60.000 9.63 0.00 40.94 4.85
1273 1284 1.966451 GGGTTCACGAACTGGCTGG 60.966 63.158 9.63 0.00 40.94 4.85
1274 1285 1.070786 GGTTCACGAACTGGCTGGA 59.929 57.895 9.63 0.00 40.94 3.86
1277 1288 2.046892 CACGAACTGGCTGGAGGG 60.047 66.667 0.00 0.00 0.00 4.30
1280 1291 2.883828 CGAACTGGCTGGAGGGTGT 61.884 63.158 0.00 0.00 0.00 4.16
1281 1292 1.456287 GAACTGGCTGGAGGGTGTT 59.544 57.895 0.00 0.00 0.00 3.32
1288 1299 0.322008 GCTGGAGGGTGTTCTTCTGG 60.322 60.000 0.00 0.00 0.00 3.86
1290 1301 1.421646 CTGGAGGGTGTTCTTCTGGTT 59.578 52.381 0.00 0.00 0.00 3.67
1297 1308 2.147150 GTGTTCTTCTGGTTGAGCCTC 58.853 52.381 0.00 0.00 38.35 4.70
1300 1311 0.322975 TCTTCTGGTTGAGCCTCAGC 59.677 55.000 0.00 0.00 38.35 4.26
1313 1324 3.040414 CTCAGCTCGACTTCGCCGA 62.040 63.158 0.00 0.00 39.60 5.54
1314 1325 2.876645 CAGCTCGACTTCGCCGAC 60.877 66.667 0.00 0.00 39.60 4.79
1315 1326 4.117661 AGCTCGACTTCGCCGACC 62.118 66.667 0.00 0.00 39.60 4.79
1316 1327 4.415332 GCTCGACTTCGCCGACCA 62.415 66.667 0.00 0.00 39.60 4.02
1317 1328 2.504244 CTCGACTTCGCCGACCAC 60.504 66.667 0.00 0.00 39.60 4.16
1318 1329 3.966026 CTCGACTTCGCCGACCACC 62.966 68.421 0.00 0.00 39.60 4.61
1319 1330 4.052229 CGACTTCGCCGACCACCT 62.052 66.667 0.00 0.00 0.00 4.00
1320 1331 2.126031 GACTTCGCCGACCACCTC 60.126 66.667 0.00 0.00 0.00 3.85
1321 1332 3.966026 GACTTCGCCGACCACCTCG 62.966 68.421 0.00 0.00 42.54 4.63
1322 1333 4.052229 CTTCGCCGACCACCTCGT 62.052 66.667 0.00 0.00 41.18 4.18
1323 1334 3.966026 CTTCGCCGACCACCTCGTC 62.966 68.421 0.00 0.00 41.18 4.20
1325 1336 4.129737 CGCCGACCACCTCGTCAT 62.130 66.667 0.00 0.00 41.18 3.06
1326 1337 2.264794 GCCGACCACCTCGTCATT 59.735 61.111 0.00 0.00 41.18 2.57
1327 1338 2.100631 GCCGACCACCTCGTCATTG 61.101 63.158 0.00 0.00 41.18 2.82
1328 1339 2.100631 CCGACCACCTCGTCATTGC 61.101 63.158 0.00 0.00 41.18 3.56
1329 1340 1.374125 CGACCACCTCGTCATTGCA 60.374 57.895 0.00 0.00 37.64 4.08
1330 1341 1.354337 CGACCACCTCGTCATTGCAG 61.354 60.000 0.00 0.00 37.64 4.41
1331 1342 1.003355 ACCACCTCGTCATTGCAGG 60.003 57.895 0.00 0.00 0.00 4.85
1332 1343 1.296392 CCACCTCGTCATTGCAGGA 59.704 57.895 3.84 0.00 0.00 3.86
1333 1344 0.742281 CCACCTCGTCATTGCAGGAG 60.742 60.000 3.84 2.48 0.00 3.69
1334 1345 4.528674 CCTCGTCATTGCAGGAGG 57.471 61.111 9.11 9.11 41.01 4.30
1335 1346 1.153289 CCTCGTCATTGCAGGAGGG 60.153 63.158 12.94 2.52 42.50 4.30
1336 1347 1.153289 CTCGTCATTGCAGGAGGGG 60.153 63.158 9.38 3.66 0.00 4.79
1337 1348 1.612146 TCGTCATTGCAGGAGGGGA 60.612 57.895 9.38 0.00 0.00 4.81
1338 1349 1.450312 CGTCATTGCAGGAGGGGAC 60.450 63.158 0.00 0.00 0.00 4.46
1339 1350 1.450312 GTCATTGCAGGAGGGGACG 60.450 63.158 0.00 0.00 0.00 4.79
1340 1351 1.612146 TCATTGCAGGAGGGGACGA 60.612 57.895 0.00 0.00 0.00 4.20
1341 1352 1.153289 CATTGCAGGAGGGGACGAG 60.153 63.158 0.00 0.00 0.00 4.18
1342 1353 3.036429 ATTGCAGGAGGGGACGAGC 62.036 63.158 0.00 0.00 0.00 5.03
1343 1354 4.704103 TGCAGGAGGGGACGAGCT 62.704 66.667 0.00 0.00 0.00 4.09
1344 1355 3.394836 GCAGGAGGGGACGAGCTT 61.395 66.667 0.00 0.00 0.00 3.74
1345 1356 2.581354 CAGGAGGGGACGAGCTTG 59.419 66.667 0.00 0.00 0.00 4.01
1346 1357 2.120718 AGGAGGGGACGAGCTTGT 59.879 61.111 6.22 6.22 0.00 3.16
1347 1358 2.266055 GGAGGGGACGAGCTTGTG 59.734 66.667 12.53 0.00 0.00 3.33
1348 1359 2.266055 GAGGGGACGAGCTTGTGG 59.734 66.667 12.53 0.00 0.00 4.17
1349 1360 2.203788 AGGGGACGAGCTTGTGGA 60.204 61.111 12.53 0.00 0.00 4.02
1350 1361 1.613630 AGGGGACGAGCTTGTGGAT 60.614 57.895 12.53 0.00 0.00 3.41
1351 1362 1.450312 GGGGACGAGCTTGTGGATG 60.450 63.158 12.53 0.00 0.00 3.51
1352 1363 2.109126 GGGACGAGCTTGTGGATGC 61.109 63.158 12.53 0.00 0.00 3.91
1353 1364 2.109126 GGACGAGCTTGTGGATGCC 61.109 63.158 12.53 1.74 0.00 4.40
1354 1365 2.434884 ACGAGCTTGTGGATGCCG 60.435 61.111 5.59 0.00 0.00 5.69
1355 1366 2.434884 CGAGCTTGTGGATGCCGT 60.435 61.111 0.00 0.00 0.00 5.68
1356 1367 2.456119 CGAGCTTGTGGATGCCGTC 61.456 63.158 0.00 0.00 0.00 4.79
1357 1368 2.434884 AGCTTGTGGATGCCGTCG 60.435 61.111 0.00 0.00 0.00 5.12
1358 1369 4.166011 GCTTGTGGATGCCGTCGC 62.166 66.667 0.00 0.00 0.00 5.19
1359 1370 3.499737 CTTGTGGATGCCGTCGCC 61.500 66.667 0.00 0.00 0.00 5.54
1399 1410 4.700365 CTGCTGCCGACGACGACA 62.700 66.667 9.28 1.80 42.66 4.35
1424 1435 4.699522 GGGGTTCGCGAACTGGCT 62.700 66.667 40.90 0.00 40.94 4.75
1425 1436 3.423154 GGGTTCGCGAACTGGCTG 61.423 66.667 40.90 0.00 40.94 4.85
1426 1437 3.423154 GGTTCGCGAACTGGCTGG 61.423 66.667 40.90 0.00 40.94 4.85
1427 1438 2.357034 GTTCGCGAACTGGCTGGA 60.357 61.111 37.61 5.95 38.25 3.86
1428 1439 2.048222 TTCGCGAACTGGCTGGAG 60.048 61.111 19.38 0.00 0.00 3.86
1429 1440 3.589654 TTCGCGAACTGGCTGGAGG 62.590 63.158 19.38 0.00 0.00 4.30
1431 1442 4.021925 GCGAACTGGCTGGAGGGT 62.022 66.667 0.00 0.00 0.00 4.34
1432 1443 2.046892 CGAACTGGCTGGAGGGTG 60.047 66.667 0.00 0.00 0.00 4.61
1433 1444 2.883828 CGAACTGGCTGGAGGGTGT 61.884 63.158 0.00 0.00 0.00 4.16
1434 1445 1.456287 GAACTGGCTGGAGGGTGTT 59.544 57.895 0.00 0.00 0.00 3.32
1435 1446 0.606673 GAACTGGCTGGAGGGTGTTC 60.607 60.000 0.00 0.00 0.00 3.18
1436 1447 1.062488 AACTGGCTGGAGGGTGTTCT 61.062 55.000 0.00 0.00 0.00 3.01
1437 1448 1.002868 CTGGCTGGAGGGTGTTCTG 60.003 63.158 0.00 0.00 0.00 3.02
1438 1449 2.352805 GGCTGGAGGGTGTTCTGG 59.647 66.667 0.00 0.00 0.00 3.86
1439 1450 2.529744 GGCTGGAGGGTGTTCTGGT 61.530 63.158 0.00 0.00 0.00 4.00
1440 1451 1.456287 GCTGGAGGGTGTTCTGGTT 59.544 57.895 0.00 0.00 0.00 3.67
1441 1452 0.890996 GCTGGAGGGTGTTCTGGTTG 60.891 60.000 0.00 0.00 0.00 3.77
1442 1453 0.764890 CTGGAGGGTGTTCTGGTTGA 59.235 55.000 0.00 0.00 0.00 3.18
1443 1454 0.764890 TGGAGGGTGTTCTGGTTGAG 59.235 55.000 0.00 0.00 0.00 3.02
1444 1455 0.606673 GGAGGGTGTTCTGGTTGAGC 60.607 60.000 0.00 0.00 0.00 4.26
1445 1456 0.606673 GAGGGTGTTCTGGTTGAGCC 60.607 60.000 0.00 0.00 37.90 4.70
1446 1457 1.062488 AGGGTGTTCTGGTTGAGCCT 61.062 55.000 0.00 0.00 38.35 4.58
1447 1458 0.606673 GGGTGTTCTGGTTGAGCCTC 60.607 60.000 0.00 0.00 38.35 4.70
1448 1459 0.108585 GGTGTTCTGGTTGAGCCTCA 59.891 55.000 0.00 0.00 38.35 3.86
1449 1460 1.517242 GTGTTCTGGTTGAGCCTCAG 58.483 55.000 0.00 0.00 38.35 3.35
1450 1461 0.250467 TGTTCTGGTTGAGCCTCAGC 60.250 55.000 0.00 0.00 38.35 4.26
1460 1471 2.883253 GCCTCAGCTCGACTTCGC 60.883 66.667 0.00 0.00 39.60 4.70
1461 1472 2.202676 CCTCAGCTCGACTTCGCC 60.203 66.667 0.00 0.00 39.60 5.54
1462 1473 2.578178 CTCAGCTCGACTTCGCCG 60.578 66.667 0.00 0.00 39.60 6.46
1463 1474 3.040414 CTCAGCTCGACTTCGCCGA 62.040 63.158 0.00 0.00 39.60 5.54
1478 1489 3.032609 CGACCGCCTCATCATCGC 61.033 66.667 0.00 0.00 0.00 4.58
1490 1501 2.928988 ATCATCGCAGGAGGGGACGA 62.929 60.000 0.00 0.00 41.74 4.20
1502 1513 0.755698 GGGGACGAGCTAGTGGATGA 60.756 60.000 3.45 0.00 0.00 2.92
1503 1514 1.112113 GGGACGAGCTAGTGGATGAA 58.888 55.000 3.45 0.00 0.00 2.57
1505 1516 1.751924 GGACGAGCTAGTGGATGAAGT 59.248 52.381 3.45 0.00 0.00 3.01
1506 1517 2.223618 GGACGAGCTAGTGGATGAAGTC 60.224 54.545 3.45 0.00 0.00 3.01
1508 1519 1.846541 GAGCTAGTGGATGAAGTCGC 58.153 55.000 0.00 0.00 0.00 5.19
1509 1520 0.461961 AGCTAGTGGATGAAGTCGCC 59.538 55.000 0.00 0.00 0.00 5.54
1510 1521 0.872021 GCTAGTGGATGAAGTCGCCG 60.872 60.000 0.00 0.00 0.00 6.46
1511 1522 0.738975 CTAGTGGATGAAGTCGCCGA 59.261 55.000 0.00 0.00 0.00 5.54
1512 1523 1.338337 CTAGTGGATGAAGTCGCCGAT 59.662 52.381 0.00 0.00 0.00 4.18
1513 1524 0.179100 AGTGGATGAAGTCGCCGATG 60.179 55.000 0.00 0.00 0.00 3.84
1514 1525 0.460284 GTGGATGAAGTCGCCGATGT 60.460 55.000 0.00 0.00 0.00 3.06
1515 1526 0.460109 TGGATGAAGTCGCCGATGTG 60.460 55.000 0.00 0.00 0.00 3.21
1516 1527 1.638467 GATGAAGTCGCCGATGTGC 59.362 57.895 0.00 0.00 0.00 4.57
1539 1550 2.663188 GCCGGAGATCATGGACGC 60.663 66.667 5.05 0.00 0.00 5.19
1540 1551 2.355126 CCGGAGATCATGGACGCG 60.355 66.667 3.53 3.53 0.00 6.01
1552 1563 2.281276 GACGCGTTTCCCCCAACT 60.281 61.111 15.53 0.00 0.00 3.16
1958 1969 0.532573 TCAGTTCACTCGCCTGATCC 59.467 55.000 0.00 0.00 30.58 3.36
1963 1974 1.191489 TCACTCGCCTGATCCAACCA 61.191 55.000 0.00 0.00 0.00 3.67
2008 2023 4.353437 ACCGGCTTCGTCGTCCAC 62.353 66.667 0.00 0.00 0.00 4.02
2051 2066 6.961359 AAAAAGAGGCAAGTGTTTGTTTAC 57.039 33.333 0.00 0.00 36.65 2.01
2052 2067 3.963383 AGAGGCAAGTGTTTGTTTACG 57.037 42.857 0.00 0.00 36.65 3.18
2053 2068 3.275999 AGAGGCAAGTGTTTGTTTACGT 58.724 40.909 0.00 0.00 36.65 3.57
2054 2069 3.064820 AGAGGCAAGTGTTTGTTTACGTG 59.935 43.478 0.00 0.00 36.65 4.49
2055 2070 1.849829 GGCAAGTGTTTGTTTACGTGC 59.150 47.619 0.00 6.72 46.67 5.34
2056 2071 1.849829 GCAAGTGTTTGTTTACGTGCC 59.150 47.619 0.00 0.00 43.37 5.01
2057 2072 2.456010 CAAGTGTTTGTTTACGTGCCC 58.544 47.619 0.00 0.00 0.00 5.36
2058 2073 1.752683 AGTGTTTGTTTACGTGCCCA 58.247 45.000 0.00 0.00 0.00 5.36
2059 2074 1.673920 AGTGTTTGTTTACGTGCCCAG 59.326 47.619 0.00 0.00 0.00 4.45
2060 2075 1.402613 GTGTTTGTTTACGTGCCCAGT 59.597 47.619 0.00 0.00 0.00 4.00
2112 2127 4.874396 CCAGTCACTAGATACACGTACAGA 59.126 45.833 0.00 0.00 0.00 3.41
2255 2416 1.160137 CGCAGGAAGGAGGAACAAAG 58.840 55.000 0.00 0.00 0.00 2.77
2439 2624 3.678056 TTATTCTTCACTCGGCACACT 57.322 42.857 0.00 0.00 0.00 3.55
2446 2631 1.132453 TCACTCGGCACACTTAGATCG 59.868 52.381 0.00 0.00 0.00 3.69
2675 2918 3.809279 TGTACTGCGAATGAGCCAATATG 59.191 43.478 0.00 0.00 36.02 1.78
2721 2966 2.303022 CTGGTCTCCTGGCTCAGTAAAA 59.697 50.000 0.00 0.00 0.00 1.52
2764 3009 3.454082 TCCTGTTGAAAATTTGGCACCTT 59.546 39.130 0.00 0.00 0.00 3.50
2925 3173 3.426159 GGGACGCGCCATATTGAATAATG 60.426 47.826 18.87 0.00 38.95 1.90
3189 3437 1.814394 ACTGCATGCATGACGTTTGAT 59.186 42.857 30.64 3.05 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.767681 AGCAATCTCCAGATCCTCCAC 59.232 52.381 0.00 0.00 32.75 4.02
83 84 2.436646 CCTGCGTGGCCTTGGTAG 60.437 66.667 3.32 1.65 0.00 3.18
217 218 2.872858 GTCAAAGACCACCACTGAAGAC 59.127 50.000 0.00 0.00 0.00 3.01
561 565 6.352137 GGGATTTTATTGATCAACCAAAGCCT 60.352 38.462 29.67 15.64 34.25 4.58
608 615 3.431725 GCCACCAACCACGCTAGC 61.432 66.667 4.06 4.06 0.00 3.42
609 616 2.746277 GGCCACCAACCACGCTAG 60.746 66.667 0.00 0.00 0.00 3.42
610 617 3.246112 AGGCCACCAACCACGCTA 61.246 61.111 5.01 0.00 0.00 4.26
611 618 4.954970 CAGGCCACCAACCACGCT 62.955 66.667 5.01 0.00 0.00 5.07
613 620 4.579384 ACCAGGCCACCAACCACG 62.579 66.667 5.01 0.00 0.00 4.94
614 621 2.912025 CACCAGGCCACCAACCAC 60.912 66.667 5.01 0.00 0.00 4.16
615 622 4.912395 GCACCAGGCCACCAACCA 62.912 66.667 5.01 0.00 36.11 3.67
616 623 4.912395 TGCACCAGGCCACCAACC 62.912 66.667 5.01 0.00 43.89 3.77
617 624 1.757423 ATTTGCACCAGGCCACCAAC 61.757 55.000 5.01 0.00 43.89 3.77
618 625 0.178950 TATTTGCACCAGGCCACCAA 60.179 50.000 5.01 0.00 43.89 3.67
619 626 0.178950 TTATTTGCACCAGGCCACCA 60.179 50.000 5.01 0.00 43.89 4.17
620 627 0.972883 TTTATTTGCACCAGGCCACC 59.027 50.000 5.01 0.00 43.89 4.61
621 628 1.668628 CGTTTATTTGCACCAGGCCAC 60.669 52.381 5.01 0.00 43.89 5.01
622 629 0.600557 CGTTTATTTGCACCAGGCCA 59.399 50.000 5.01 0.00 43.89 5.36
623 630 0.108851 CCGTTTATTTGCACCAGGCC 60.109 55.000 0.00 0.00 43.89 5.19
624 631 0.108851 CCCGTTTATTTGCACCAGGC 60.109 55.000 0.00 0.00 45.13 4.85
625 632 0.108851 GCCCGTTTATTTGCACCAGG 60.109 55.000 0.00 0.00 0.00 4.45
626 633 0.108851 GGCCCGTTTATTTGCACCAG 60.109 55.000 0.00 0.00 0.00 4.00
627 634 0.827925 TGGCCCGTTTATTTGCACCA 60.828 50.000 0.00 0.00 0.00 4.17
628 635 0.108851 CTGGCCCGTTTATTTGCACC 60.109 55.000 0.00 0.00 0.00 5.01
629 636 0.735978 GCTGGCCCGTTTATTTGCAC 60.736 55.000 0.00 0.00 0.00 4.57
630 637 1.589113 GCTGGCCCGTTTATTTGCA 59.411 52.632 0.00 0.00 0.00 4.08
631 638 1.516169 CGCTGGCCCGTTTATTTGC 60.516 57.895 0.00 0.00 0.00 3.68
632 639 0.179174 GACGCTGGCCCGTTTATTTG 60.179 55.000 8.50 0.00 42.24 2.32
633 640 0.322187 AGACGCTGGCCCGTTTATTT 60.322 50.000 8.50 0.00 42.24 1.40
634 641 0.743345 GAGACGCTGGCCCGTTTATT 60.743 55.000 8.50 0.00 42.24 1.40
635 642 1.153429 GAGACGCTGGCCCGTTTAT 60.153 57.895 8.50 0.00 42.24 1.40
636 643 2.221906 GAGAGACGCTGGCCCGTTTA 62.222 60.000 8.50 0.00 42.24 2.01
637 644 3.591254 GAGAGACGCTGGCCCGTTT 62.591 63.158 8.50 2.84 42.24 3.60
638 645 4.070552 GAGAGACGCTGGCCCGTT 62.071 66.667 8.50 0.00 42.24 4.44
641 648 4.500116 GACGAGAGACGCTGGCCC 62.500 72.222 0.00 0.00 46.94 5.80
642 649 3.749064 TGACGAGAGACGCTGGCC 61.749 66.667 0.00 0.00 46.94 5.36
643 650 2.505118 GTGACGAGAGACGCTGGC 60.505 66.667 0.00 0.00 46.94 4.85
644 651 1.867919 AAGGTGACGAGAGACGCTGG 61.868 60.000 0.00 0.00 46.94 4.85
645 652 0.455295 GAAGGTGACGAGAGACGCTG 60.455 60.000 0.00 0.00 46.94 5.18
646 653 0.606944 AGAAGGTGACGAGAGACGCT 60.607 55.000 0.00 0.00 46.94 5.07
647 654 0.179184 GAGAAGGTGACGAGAGACGC 60.179 60.000 0.00 0.00 46.94 5.19
649 656 0.812549 GGGAGAAGGTGACGAGAGAC 59.187 60.000 0.00 0.00 0.00 3.36
650 657 0.677098 CGGGAGAAGGTGACGAGAGA 60.677 60.000 0.00 0.00 0.00 3.10
651 658 0.961358 ACGGGAGAAGGTGACGAGAG 60.961 60.000 0.00 0.00 0.00 3.20
652 659 0.538977 AACGGGAGAAGGTGACGAGA 60.539 55.000 0.00 0.00 0.00 4.04
653 660 0.109226 GAACGGGAGAAGGTGACGAG 60.109 60.000 0.00 0.00 0.00 4.18
654 661 0.824595 TGAACGGGAGAAGGTGACGA 60.825 55.000 0.00 0.00 0.00 4.20
655 662 0.032952 TTGAACGGGAGAAGGTGACG 59.967 55.000 0.00 0.00 0.00 4.35
656 663 1.509703 GTTGAACGGGAGAAGGTGAC 58.490 55.000 0.00 0.00 0.00 3.67
657 664 0.395312 GGTTGAACGGGAGAAGGTGA 59.605 55.000 0.00 0.00 0.00 4.02
658 665 0.107831 TGGTTGAACGGGAGAAGGTG 59.892 55.000 0.00 0.00 0.00 4.00
659 666 0.108019 GTGGTTGAACGGGAGAAGGT 59.892 55.000 0.00 0.00 0.00 3.50
660 667 0.396811 AGTGGTTGAACGGGAGAAGG 59.603 55.000 0.00 0.00 0.00 3.46
661 668 2.256117 AAGTGGTTGAACGGGAGAAG 57.744 50.000 0.00 0.00 0.00 2.85
662 669 2.294074 CAAAGTGGTTGAACGGGAGAA 58.706 47.619 0.00 0.00 39.87 2.87
663 670 1.961793 CAAAGTGGTTGAACGGGAGA 58.038 50.000 0.00 0.00 39.87 3.71
664 671 0.310854 GCAAAGTGGTTGAACGGGAG 59.689 55.000 0.00 0.00 39.87 4.30
665 672 0.106918 AGCAAAGTGGTTGAACGGGA 60.107 50.000 0.00 0.00 39.87 5.14
666 673 0.030638 CAGCAAAGTGGTTGAACGGG 59.969 55.000 0.00 0.00 39.87 5.28
667 674 0.594796 GCAGCAAAGTGGTTGAACGG 60.595 55.000 0.00 0.00 39.87 4.44
668 675 0.594796 GGCAGCAAAGTGGTTGAACG 60.595 55.000 0.00 0.00 39.87 3.95
669 676 0.594796 CGGCAGCAAAGTGGTTGAAC 60.595 55.000 0.00 0.00 39.87 3.18
670 677 1.732917 CGGCAGCAAAGTGGTTGAA 59.267 52.632 0.00 0.00 39.87 2.69
671 678 2.844451 GCGGCAGCAAAGTGGTTGA 61.844 57.895 3.18 0.00 44.35 3.18
672 679 2.355009 GCGGCAGCAAAGTGGTTG 60.355 61.111 3.18 0.00 44.35 3.77
673 680 3.964875 CGCGGCAGCAAAGTGGTT 61.965 61.111 10.08 0.00 45.49 3.67
691 698 3.057548 TTCTGCTGCACATGCCGG 61.058 61.111 0.00 0.00 41.18 6.13
692 699 2.177531 GTTCTGCTGCACATGCCG 59.822 61.111 0.00 0.00 41.18 5.69
693 700 1.080974 GTGTTCTGCTGCACATGCC 60.081 57.895 0.00 0.00 41.18 4.40
694 701 1.129998 CTAGTGTTCTGCTGCACATGC 59.870 52.381 0.00 0.00 38.02 4.06
695 702 1.129998 GCTAGTGTTCTGCTGCACATG 59.870 52.381 0.00 0.00 38.02 3.21
696 703 1.002888 AGCTAGTGTTCTGCTGCACAT 59.997 47.619 0.00 0.00 38.02 3.21
697 704 0.394192 AGCTAGTGTTCTGCTGCACA 59.606 50.000 0.00 0.00 38.02 4.57
698 705 2.266554 CTAGCTAGTGTTCTGCTGCAC 58.733 52.381 12.92 0.00 37.62 4.57
699 706 1.205655 CCTAGCTAGTGTTCTGCTGCA 59.794 52.381 19.31 0.88 37.62 4.41
700 707 1.478510 TCCTAGCTAGTGTTCTGCTGC 59.521 52.381 19.31 0.00 37.62 5.25
701 708 3.715495 CATCCTAGCTAGTGTTCTGCTG 58.285 50.000 19.31 1.47 37.62 4.41
702 709 2.102252 GCATCCTAGCTAGTGTTCTGCT 59.898 50.000 19.31 0.00 40.43 4.24
703 710 2.159043 TGCATCCTAGCTAGTGTTCTGC 60.159 50.000 19.31 17.78 34.99 4.26
704 711 3.808466 TGCATCCTAGCTAGTGTTCTG 57.192 47.619 19.31 9.70 34.99 3.02
705 712 4.202305 GGAATGCATCCTAGCTAGTGTTCT 60.202 45.833 19.31 1.42 45.56 3.01
706 713 4.061596 GGAATGCATCCTAGCTAGTGTTC 58.938 47.826 19.31 11.55 45.56 3.18
707 714 4.078639 GGAATGCATCCTAGCTAGTGTT 57.921 45.455 19.31 3.86 45.56 3.32
708 715 3.760580 GGAATGCATCCTAGCTAGTGT 57.239 47.619 19.31 4.73 45.56 3.55
718 725 2.582272 TGCACCTTGGAATGCATCC 58.418 52.632 0.00 3.83 46.63 3.51
720 727 3.199071 ATGAATTGCACCTTGGAATGCAT 59.801 39.130 7.81 7.81 45.57 3.96
721 728 2.568062 ATGAATTGCACCTTGGAATGCA 59.432 40.909 3.79 3.79 45.81 3.96
722 729 2.747396 TGAATTGCACCTTGGAATGC 57.253 45.000 0.00 0.00 37.43 3.56
723 730 5.353938 CCTAATGAATTGCACCTTGGAATG 58.646 41.667 0.00 0.00 37.43 2.67
724 731 4.141869 GCCTAATGAATTGCACCTTGGAAT 60.142 41.667 0.00 0.00 40.20 3.01
725 732 3.195396 GCCTAATGAATTGCACCTTGGAA 59.805 43.478 0.00 0.00 30.73 3.53
726 733 2.760092 GCCTAATGAATTGCACCTTGGA 59.240 45.455 0.00 0.00 0.00 3.53
727 734 2.496871 TGCCTAATGAATTGCACCTTGG 59.503 45.455 0.00 0.00 0.00 3.61
728 735 3.429822 CCTGCCTAATGAATTGCACCTTG 60.430 47.826 0.00 0.00 0.00 3.61
729 736 2.762327 CCTGCCTAATGAATTGCACCTT 59.238 45.455 0.00 0.00 0.00 3.50
730 737 2.025037 TCCTGCCTAATGAATTGCACCT 60.025 45.455 0.00 0.00 0.00 4.00
731 738 2.360165 CTCCTGCCTAATGAATTGCACC 59.640 50.000 0.00 0.00 0.00 5.01
732 739 2.223665 GCTCCTGCCTAATGAATTGCAC 60.224 50.000 0.00 0.00 0.00 4.57
733 740 2.026641 GCTCCTGCCTAATGAATTGCA 58.973 47.619 0.00 0.00 0.00 4.08
734 741 2.292845 GAGCTCCTGCCTAATGAATTGC 59.707 50.000 0.87 0.00 40.80 3.56
735 742 2.883386 GGAGCTCCTGCCTAATGAATTG 59.117 50.000 26.25 0.00 40.80 2.32
736 743 2.511218 TGGAGCTCCTGCCTAATGAATT 59.489 45.455 32.28 0.00 40.80 2.17
737 744 2.106166 CTGGAGCTCCTGCCTAATGAAT 59.894 50.000 32.28 0.00 40.80 2.57
738 745 1.487976 CTGGAGCTCCTGCCTAATGAA 59.512 52.381 32.28 8.10 40.80 2.57
739 746 1.126488 CTGGAGCTCCTGCCTAATGA 58.874 55.000 32.28 8.86 40.80 2.57
740 747 3.702147 CTGGAGCTCCTGCCTAATG 57.298 57.895 32.28 9.23 40.80 1.90
756 763 0.969149 TATGTATCGCTCCAGGGCTG 59.031 55.000 0.00 0.00 0.00 4.85
757 764 1.261480 CTATGTATCGCTCCAGGGCT 58.739 55.000 0.00 0.00 0.00 5.19
758 765 0.969894 ACTATGTATCGCTCCAGGGC 59.030 55.000 0.00 0.00 0.00 5.19
759 766 2.868044 GCAACTATGTATCGCTCCAGGG 60.868 54.545 0.00 0.00 0.00 4.45
760 767 2.224042 TGCAACTATGTATCGCTCCAGG 60.224 50.000 0.00 0.00 0.00 4.45
761 768 2.797156 GTGCAACTATGTATCGCTCCAG 59.203 50.000 0.00 0.00 0.00 3.86
762 769 2.798145 CGTGCAACTATGTATCGCTCCA 60.798 50.000 0.00 0.00 31.75 3.86
763 770 1.787155 CGTGCAACTATGTATCGCTCC 59.213 52.381 0.00 0.00 31.75 4.70
764 771 1.190323 GCGTGCAACTATGTATCGCTC 59.810 52.381 5.44 0.00 38.03 5.03
765 772 1.209128 GCGTGCAACTATGTATCGCT 58.791 50.000 5.44 0.00 38.03 4.93
766 773 0.232303 GGCGTGCAACTATGTATCGC 59.768 55.000 4.20 4.20 39.20 4.58
767 774 0.859232 GGGCGTGCAACTATGTATCG 59.141 55.000 0.00 0.00 31.75 2.92
768 775 2.135933 GAGGGCGTGCAACTATGTATC 58.864 52.381 0.00 0.00 31.75 2.24
769 776 1.538204 CGAGGGCGTGCAACTATGTAT 60.538 52.381 0.00 0.00 31.75 2.29
770 777 0.179121 CGAGGGCGTGCAACTATGTA 60.179 55.000 0.00 0.00 31.75 2.29
771 778 1.447838 CGAGGGCGTGCAACTATGT 60.448 57.895 0.00 0.00 31.75 2.29
772 779 2.173669 CCGAGGGCGTGCAACTATG 61.174 63.158 0.00 0.00 35.23 2.23
773 780 2.186903 CCGAGGGCGTGCAACTAT 59.813 61.111 0.00 0.00 35.23 2.12
774 781 4.077184 CCCGAGGGCGTGCAACTA 62.077 66.667 0.00 0.00 35.23 2.24
811 822 3.924686 GGTGTATATATGCTGCCACGTAC 59.075 47.826 0.00 0.00 0.00 3.67
812 823 3.830178 AGGTGTATATATGCTGCCACGTA 59.170 43.478 13.87 0.00 0.00 3.57
814 825 2.995939 CAGGTGTATATATGCTGCCACG 59.004 50.000 13.87 0.00 0.00 4.94
844 855 0.179018 GTTGTCTGGTGACTTGGGCT 60.179 55.000 0.00 0.00 43.29 5.19
850 861 0.464036 TTCGCTGTTGTCTGGTGACT 59.536 50.000 0.00 0.00 43.29 3.41
857 868 0.179045 AGGCTTGTTCGCTGTTGTCT 60.179 50.000 0.00 0.00 0.00 3.41
861 872 0.035458 AGCTAGGCTTGTTCGCTGTT 59.965 50.000 0.00 0.00 33.89 3.16
874 885 2.108250 AGAGAGAGAGGGCTTAGCTAGG 59.892 54.545 3.59 0.00 0.00 3.02
875 886 3.073062 AGAGAGAGAGAGGGCTTAGCTAG 59.927 52.174 3.59 0.00 0.00 3.42
876 887 3.053077 AGAGAGAGAGAGGGCTTAGCTA 58.947 50.000 3.59 0.00 0.00 3.32
877 888 1.852965 AGAGAGAGAGAGGGCTTAGCT 59.147 52.381 3.59 0.00 0.00 3.32
878 889 2.230660 GAGAGAGAGAGAGGGCTTAGC 58.769 57.143 0.00 0.00 0.00 3.09
879 890 2.489073 GGGAGAGAGAGAGAGGGCTTAG 60.489 59.091 0.00 0.00 0.00 2.18
880 891 1.497286 GGGAGAGAGAGAGAGGGCTTA 59.503 57.143 0.00 0.00 0.00 3.09
881 892 0.261696 GGGAGAGAGAGAGAGGGCTT 59.738 60.000 0.00 0.00 0.00 4.35
882 893 0.627469 AGGGAGAGAGAGAGAGGGCT 60.627 60.000 0.00 0.00 0.00 5.19
883 894 1.145571 TAGGGAGAGAGAGAGAGGGC 58.854 60.000 0.00 0.00 0.00 5.19
884 895 2.027192 CGATAGGGAGAGAGAGAGAGGG 60.027 59.091 0.00 0.00 0.00 4.30
885 896 2.903784 TCGATAGGGAGAGAGAGAGAGG 59.096 54.545 0.00 0.00 0.00 3.69
886 897 3.614150 CGTCGATAGGGAGAGAGAGAGAG 60.614 56.522 0.00 0.00 0.00 3.20
887 898 2.297880 CGTCGATAGGGAGAGAGAGAGA 59.702 54.545 0.00 0.00 0.00 3.10
888 899 2.611971 CCGTCGATAGGGAGAGAGAGAG 60.612 59.091 0.00 0.00 31.98 3.20
889 900 1.345089 CCGTCGATAGGGAGAGAGAGA 59.655 57.143 0.00 0.00 31.98 3.10
916 927 1.985116 GAGGAGGAAGGGAGCACGT 60.985 63.158 0.00 0.00 0.00 4.49
971 982 0.983467 TCCTTGCTCCACTGCATGTA 59.017 50.000 0.00 0.00 42.96 2.29
972 983 0.322277 CTCCTTGCTCCACTGCATGT 60.322 55.000 0.00 0.00 42.96 3.21
973 984 1.654954 GCTCCTTGCTCCACTGCATG 61.655 60.000 0.00 0.00 42.96 4.06
974 985 1.378250 GCTCCTTGCTCCACTGCAT 60.378 57.895 0.00 0.00 42.96 3.96
992 1003 2.537560 GCCGACGCCATGATCCAAG 61.538 63.158 0.00 0.00 0.00 3.61
1009 1020 3.649986 AGTGTTGCCGTGCTTCGC 61.650 61.111 0.00 0.00 38.35 4.70
1037 1048 1.460689 TCCTTCCACACCGAGGGTT 60.461 57.895 0.00 0.00 31.02 4.11
1038 1049 2.203182 TCCTTCCACACCGAGGGT 59.797 61.111 0.00 0.00 35.62 4.34
1039 1050 1.481056 AAGTCCTTCCACACCGAGGG 61.481 60.000 0.00 0.00 0.00 4.30
1044 1055 0.320508 GGTCGAAGTCCTTCCACACC 60.321 60.000 7.03 4.95 33.30 4.16
1051 1062 1.874345 ATGACGCGGTCGAAGTCCTT 61.874 55.000 12.47 0.00 39.41 3.36
1053 1064 1.872679 GATGACGCGGTCGAAGTCC 60.873 63.158 12.47 0.00 39.41 3.85
1055 1066 2.202440 CGATGACGCGGTCGAAGT 60.202 61.111 20.97 0.00 40.11 3.01
1060 1071 2.774951 CGAACACGATGACGCGGTC 61.775 63.158 12.47 6.39 43.96 4.79
1140 1151 1.360192 GTGTTTCTTTGCGCTGGCT 59.640 52.632 9.73 0.00 40.82 4.75
1147 1158 0.591659 GAGGTCCCGTGTTTCTTTGC 59.408 55.000 0.00 0.00 0.00 3.68
1240 1251 4.899239 CCCTCCATCGCTGTCGCC 62.899 72.222 0.00 0.00 35.26 5.54
1241 1252 3.665675 AACCCTCCATCGCTGTCGC 62.666 63.158 0.00 0.00 35.26 5.19
1242 1253 1.519455 GAACCCTCCATCGCTGTCG 60.519 63.158 0.00 0.00 0.00 4.35
1243 1254 0.741221 GTGAACCCTCCATCGCTGTC 60.741 60.000 0.00 0.00 0.00 3.51
1244 1255 1.296715 GTGAACCCTCCATCGCTGT 59.703 57.895 0.00 0.00 0.00 4.40
1245 1256 1.811266 CGTGAACCCTCCATCGCTG 60.811 63.158 0.00 0.00 0.00 5.18
1246 1257 1.541310 TTCGTGAACCCTCCATCGCT 61.541 55.000 0.00 0.00 0.00 4.93
1247 1258 1.079405 TTCGTGAACCCTCCATCGC 60.079 57.895 0.00 0.00 0.00 4.58
1248 1259 0.246635 AGTTCGTGAACCCTCCATCG 59.753 55.000 9.03 0.00 42.06 3.84
1249 1260 1.676014 CCAGTTCGTGAACCCTCCATC 60.676 57.143 9.03 0.00 42.06 3.51
1250 1261 0.324943 CCAGTTCGTGAACCCTCCAT 59.675 55.000 9.03 0.00 42.06 3.41
1251 1262 1.752198 CCAGTTCGTGAACCCTCCA 59.248 57.895 9.03 0.00 42.06 3.86
1252 1263 1.671379 GCCAGTTCGTGAACCCTCC 60.671 63.158 9.03 0.00 42.06 4.30
1253 1264 0.951040 CAGCCAGTTCGTGAACCCTC 60.951 60.000 9.03 0.00 42.06 4.30
1254 1265 1.071471 CAGCCAGTTCGTGAACCCT 59.929 57.895 9.03 1.52 42.06 4.34
1255 1266 1.966451 CCAGCCAGTTCGTGAACCC 60.966 63.158 9.03 0.00 42.06 4.11
1256 1267 0.951040 CTCCAGCCAGTTCGTGAACC 60.951 60.000 9.03 0.00 42.06 3.62
1257 1268 0.951040 CCTCCAGCCAGTTCGTGAAC 60.951 60.000 4.58 4.58 41.45 3.18
1258 1269 1.371183 CCTCCAGCCAGTTCGTGAA 59.629 57.895 0.00 0.00 0.00 3.18
1259 1270 2.583441 CCCTCCAGCCAGTTCGTGA 61.583 63.158 0.00 0.00 0.00 4.35
1260 1271 2.046892 CCCTCCAGCCAGTTCGTG 60.047 66.667 0.00 0.00 0.00 4.35
1261 1272 2.526873 ACCCTCCAGCCAGTTCGT 60.527 61.111 0.00 0.00 0.00 3.85
1262 1273 2.046892 CACCCTCCAGCCAGTTCG 60.047 66.667 0.00 0.00 0.00 3.95
1263 1274 0.606673 GAACACCCTCCAGCCAGTTC 60.607 60.000 0.00 0.00 0.00 3.01
1264 1275 1.062488 AGAACACCCTCCAGCCAGTT 61.062 55.000 0.00 0.00 0.00 3.16
1265 1276 1.062488 AAGAACACCCTCCAGCCAGT 61.062 55.000 0.00 0.00 0.00 4.00
1266 1277 0.322008 GAAGAACACCCTCCAGCCAG 60.322 60.000 0.00 0.00 0.00 4.85
1267 1278 0.768221 AGAAGAACACCCTCCAGCCA 60.768 55.000 0.00 0.00 0.00 4.75
1268 1279 0.322008 CAGAAGAACACCCTCCAGCC 60.322 60.000 0.00 0.00 0.00 4.85
1269 1280 0.322008 CCAGAAGAACACCCTCCAGC 60.322 60.000 0.00 0.00 0.00 4.85
1270 1281 1.059913 ACCAGAAGAACACCCTCCAG 58.940 55.000 0.00 0.00 0.00 3.86
1271 1282 1.142870 CAACCAGAAGAACACCCTCCA 59.857 52.381 0.00 0.00 0.00 3.86
1272 1283 1.420138 TCAACCAGAAGAACACCCTCC 59.580 52.381 0.00 0.00 0.00 4.30
1273 1284 2.772287 CTCAACCAGAAGAACACCCTC 58.228 52.381 0.00 0.00 0.00 4.30
1274 1285 1.202818 GCTCAACCAGAAGAACACCCT 60.203 52.381 0.00 0.00 0.00 4.34
1277 1288 2.147150 GAGGCTCAACCAGAAGAACAC 58.853 52.381 10.25 0.00 43.14 3.32
1280 1291 1.271054 GCTGAGGCTCAACCAGAAGAA 60.271 52.381 19.29 0.00 43.14 2.52
1281 1292 0.322975 GCTGAGGCTCAACCAGAAGA 59.677 55.000 19.29 0.00 43.14 2.87
1313 1324 1.003355 CCTGCAATGACGAGGTGGT 60.003 57.895 0.00 0.00 0.00 4.16
1314 1325 0.742281 CTCCTGCAATGACGAGGTGG 60.742 60.000 0.00 0.00 0.00 4.61
1315 1326 0.742281 CCTCCTGCAATGACGAGGTG 60.742 60.000 0.00 0.00 37.67 4.00
1316 1327 1.599047 CCTCCTGCAATGACGAGGT 59.401 57.895 0.00 0.00 37.67 3.85
1317 1328 1.153289 CCCTCCTGCAATGACGAGG 60.153 63.158 0.00 4.35 41.41 4.63
1318 1329 1.153289 CCCCTCCTGCAATGACGAG 60.153 63.158 0.00 0.00 0.00 4.18
1319 1330 1.612146 TCCCCTCCTGCAATGACGA 60.612 57.895 0.00 0.00 0.00 4.20
1320 1331 1.450312 GTCCCCTCCTGCAATGACG 60.450 63.158 0.00 0.00 0.00 4.35
1321 1332 1.450312 CGTCCCCTCCTGCAATGAC 60.450 63.158 0.00 0.00 0.00 3.06
1322 1333 1.612146 TCGTCCCCTCCTGCAATGA 60.612 57.895 0.00 0.00 0.00 2.57
1323 1334 1.153289 CTCGTCCCCTCCTGCAATG 60.153 63.158 0.00 0.00 0.00 2.82
1324 1335 3.036429 GCTCGTCCCCTCCTGCAAT 62.036 63.158 0.00 0.00 0.00 3.56
1325 1336 3.706373 GCTCGTCCCCTCCTGCAA 61.706 66.667 0.00 0.00 0.00 4.08
1326 1337 4.704103 AGCTCGTCCCCTCCTGCA 62.704 66.667 0.00 0.00 0.00 4.41
1327 1338 3.394836 AAGCTCGTCCCCTCCTGC 61.395 66.667 0.00 0.00 0.00 4.85
1328 1339 2.286523 ACAAGCTCGTCCCCTCCTG 61.287 63.158 0.00 0.00 0.00 3.86
1329 1340 2.120718 ACAAGCTCGTCCCCTCCT 59.879 61.111 0.00 0.00 0.00 3.69
1330 1341 2.266055 CACAAGCTCGTCCCCTCC 59.734 66.667 0.00 0.00 0.00 4.30
1331 1342 1.617947 ATCCACAAGCTCGTCCCCTC 61.618 60.000 0.00 0.00 0.00 4.30
1332 1343 1.613630 ATCCACAAGCTCGTCCCCT 60.614 57.895 0.00 0.00 0.00 4.79
1333 1344 1.450312 CATCCACAAGCTCGTCCCC 60.450 63.158 0.00 0.00 0.00 4.81
1334 1345 2.109126 GCATCCACAAGCTCGTCCC 61.109 63.158 0.00 0.00 0.00 4.46
1335 1346 2.109126 GGCATCCACAAGCTCGTCC 61.109 63.158 0.00 0.00 0.00 4.79
1336 1347 2.456119 CGGCATCCACAAGCTCGTC 61.456 63.158 0.00 0.00 0.00 4.20
1337 1348 2.434884 CGGCATCCACAAGCTCGT 60.435 61.111 0.00 0.00 0.00 4.18
1338 1349 2.434884 ACGGCATCCACAAGCTCG 60.435 61.111 0.00 0.00 0.00 5.03
1339 1350 2.456119 CGACGGCATCCACAAGCTC 61.456 63.158 0.00 0.00 0.00 4.09
1340 1351 2.434884 CGACGGCATCCACAAGCT 60.435 61.111 0.00 0.00 0.00 3.74
1341 1352 4.166011 GCGACGGCATCCACAAGC 62.166 66.667 0.00 0.00 39.62 4.01
1342 1353 3.499737 GGCGACGGCATCCACAAG 61.500 66.667 17.49 0.00 42.47 3.16
1382 1393 4.700365 TGTCGTCGTCGGCAGCAG 62.700 66.667 5.00 0.00 46.84 4.24
1407 1418 4.699522 AGCCAGTTCGCGAACCCC 62.700 66.667 40.01 29.26 42.06 4.95
1408 1419 3.423154 CAGCCAGTTCGCGAACCC 61.423 66.667 40.01 29.56 42.06 4.11
1409 1420 3.423154 CCAGCCAGTTCGCGAACC 61.423 66.667 40.01 27.88 42.06 3.62
1410 1421 2.357034 TCCAGCCAGTTCGCGAAC 60.357 61.111 38.00 38.00 41.45 3.95
1411 1422 2.048222 CTCCAGCCAGTTCGCGAA 60.048 61.111 19.38 19.38 0.00 4.70
1412 1423 4.069232 CCTCCAGCCAGTTCGCGA 62.069 66.667 3.71 3.71 0.00 5.87
1414 1425 4.021925 ACCCTCCAGCCAGTTCGC 62.022 66.667 0.00 0.00 0.00 4.70
1415 1426 2.046892 CACCCTCCAGCCAGTTCG 60.047 66.667 0.00 0.00 0.00 3.95
1416 1427 0.606673 GAACACCCTCCAGCCAGTTC 60.607 60.000 0.00 0.00 0.00 3.01
1417 1428 1.062488 AGAACACCCTCCAGCCAGTT 61.062 55.000 0.00 0.00 0.00 3.16
1418 1429 1.462238 AGAACACCCTCCAGCCAGT 60.462 57.895 0.00 0.00 0.00 4.00
1419 1430 1.002868 CAGAACACCCTCCAGCCAG 60.003 63.158 0.00 0.00 0.00 4.85
1420 1431 2.528818 CCAGAACACCCTCCAGCCA 61.529 63.158 0.00 0.00 0.00 4.75
1421 1432 2.069165 AACCAGAACACCCTCCAGCC 62.069 60.000 0.00 0.00 0.00 4.85
1422 1433 0.890996 CAACCAGAACACCCTCCAGC 60.891 60.000 0.00 0.00 0.00 4.85
1423 1434 0.764890 TCAACCAGAACACCCTCCAG 59.235 55.000 0.00 0.00 0.00 3.86
1424 1435 0.764890 CTCAACCAGAACACCCTCCA 59.235 55.000 0.00 0.00 0.00 3.86
1425 1436 0.606673 GCTCAACCAGAACACCCTCC 60.607 60.000 0.00 0.00 0.00 4.30
1426 1437 0.606673 GGCTCAACCAGAACACCCTC 60.607 60.000 0.00 0.00 38.86 4.30
1427 1438 1.062488 AGGCTCAACCAGAACACCCT 61.062 55.000 0.00 0.00 43.14 4.34
1428 1439 0.606673 GAGGCTCAACCAGAACACCC 60.607 60.000 10.25 0.00 43.14 4.61
1429 1440 0.108585 TGAGGCTCAACCAGAACACC 59.891 55.000 16.28 0.00 43.14 4.16
1430 1441 1.517242 CTGAGGCTCAACCAGAACAC 58.483 55.000 19.29 0.00 43.14 3.32
1431 1442 0.250467 GCTGAGGCTCAACCAGAACA 60.250 55.000 19.29 0.00 43.14 3.18
1432 1443 2.549332 GCTGAGGCTCAACCAGAAC 58.451 57.895 19.29 0.00 43.14 3.01
1443 1454 2.883253 GCGAAGTCGAGCTGAGGC 60.883 66.667 4.59 0.00 43.02 4.70
1444 1455 2.202676 GGCGAAGTCGAGCTGAGG 60.203 66.667 4.59 0.00 43.02 3.86
1455 1466 4.514577 ATGAGGCGGTCGGCGAAG 62.515 66.667 12.92 10.50 44.92 3.79
1456 1467 4.508128 GATGAGGCGGTCGGCGAA 62.508 66.667 12.92 0.00 44.92 4.70
1458 1469 4.592192 ATGATGAGGCGGTCGGCG 62.592 66.667 11.07 0.00 44.92 6.46
1459 1470 2.663188 GATGATGAGGCGGTCGGC 60.663 66.667 8.91 8.91 42.51 5.54
1460 1471 2.355126 CGATGATGAGGCGGTCGG 60.355 66.667 0.00 0.00 0.00 4.79
1461 1472 3.032609 GCGATGATGAGGCGGTCG 61.033 66.667 0.00 0.00 35.56 4.79
1462 1473 1.953138 CTGCGATGATGAGGCGGTC 60.953 63.158 0.00 0.00 0.00 4.79
1463 1474 2.107750 CTGCGATGATGAGGCGGT 59.892 61.111 0.00 0.00 0.00 5.68
1478 1489 1.076632 ACTAGCTCGTCCCCTCCTG 60.077 63.158 0.00 0.00 0.00 3.86
1484 1495 1.067821 CTTCATCCACTAGCTCGTCCC 59.932 57.143 0.00 0.00 0.00 4.46
1490 1501 0.461961 GGCGACTTCATCCACTAGCT 59.538 55.000 0.00 0.00 0.00 3.32
1492 1503 0.738975 TCGGCGACTTCATCCACTAG 59.261 55.000 4.99 0.00 0.00 2.57
1493 1504 1.067060 CATCGGCGACTTCATCCACTA 59.933 52.381 13.76 0.00 0.00 2.74
1531 1542 3.131478 GGGGGAAACGCGTCCATG 61.131 66.667 14.44 0.00 45.87 3.66
1539 1550 1.544246 GGAATGAAGTTGGGGGAAACG 59.456 52.381 0.00 0.00 35.13 3.60
1540 1551 2.562738 CTGGAATGAAGTTGGGGGAAAC 59.437 50.000 0.00 0.00 0.00 2.78
1930 1941 4.649674 AGGCGAGTGAACTGAATTATAGGA 59.350 41.667 0.00 0.00 0.00 2.94
1931 1942 4.747108 CAGGCGAGTGAACTGAATTATAGG 59.253 45.833 0.00 0.00 34.21 2.57
1932 1943 5.592054 TCAGGCGAGTGAACTGAATTATAG 58.408 41.667 0.00 0.00 38.22 1.31
1933 1944 5.592104 TCAGGCGAGTGAACTGAATTATA 57.408 39.130 0.00 0.00 38.22 0.98
1934 1945 4.471904 TCAGGCGAGTGAACTGAATTAT 57.528 40.909 0.00 0.00 38.22 1.28
1935 1946 3.953712 TCAGGCGAGTGAACTGAATTA 57.046 42.857 0.00 0.00 38.22 1.40
1936 1947 2.839486 TCAGGCGAGTGAACTGAATT 57.161 45.000 0.00 0.00 38.22 2.17
1942 1953 1.079503 GTTGGATCAGGCGAGTGAAC 58.920 55.000 0.00 0.00 0.00 3.18
1944 1955 1.191489 TGGTTGGATCAGGCGAGTGA 61.191 55.000 0.00 0.00 0.00 3.41
1958 1969 2.536365 GCATCTGCACATGAATGGTTG 58.464 47.619 6.09 0.00 41.59 3.77
1963 1974 0.380733 CAGCGCATCTGCACATGAAT 59.619 50.000 11.47 0.00 42.21 2.57
2000 2015 2.717809 GAAGAAGCGCGTGGACGAC 61.718 63.158 8.43 0.00 43.02 4.34
2029 2044 5.099575 CGTAAACAAACACTTGCCTCTTTT 58.900 37.500 0.00 0.00 35.84 2.27
2046 2061 1.127951 CGAATCACTGGGCACGTAAAC 59.872 52.381 0.00 0.00 0.00 2.01
2047 2062 1.434555 CGAATCACTGGGCACGTAAA 58.565 50.000 0.00 0.00 0.00 2.01
2048 2063 1.017177 GCGAATCACTGGGCACGTAA 61.017 55.000 0.00 0.00 0.00 3.18
2049 2064 1.447140 GCGAATCACTGGGCACGTA 60.447 57.895 0.00 0.00 0.00 3.57
2050 2065 2.742372 GCGAATCACTGGGCACGT 60.742 61.111 0.00 0.00 0.00 4.49
2051 2066 2.572095 TAGGCGAATCACTGGGCACG 62.572 60.000 0.00 0.00 0.00 5.34
2052 2067 0.811616 CTAGGCGAATCACTGGGCAC 60.812 60.000 0.00 0.00 0.00 5.01
2053 2068 1.522092 CTAGGCGAATCACTGGGCA 59.478 57.895 0.00 0.00 0.00 5.36
2054 2069 1.889573 GCTAGGCGAATCACTGGGC 60.890 63.158 0.00 0.00 0.00 5.36
2055 2070 0.531532 CAGCTAGGCGAATCACTGGG 60.532 60.000 0.00 0.00 0.00 4.45
2056 2071 0.461548 TCAGCTAGGCGAATCACTGG 59.538 55.000 0.00 0.00 0.00 4.00
2057 2072 2.299993 TTCAGCTAGGCGAATCACTG 57.700 50.000 0.00 0.00 0.00 3.66
2058 2073 3.550437 AATTCAGCTAGGCGAATCACT 57.450 42.857 0.00 0.00 33.46 3.41
2059 2074 5.683859 CATAAATTCAGCTAGGCGAATCAC 58.316 41.667 0.00 0.00 33.46 3.06
2060 2075 4.214119 GCATAAATTCAGCTAGGCGAATCA 59.786 41.667 0.00 0.00 33.46 2.57
2163 2320 8.535592 CGACTGTCAATTATGAAGTGAGTAATC 58.464 37.037 8.73 0.00 36.01 1.75
2297 2461 0.437295 CGAACGTGGAATTGTCGACC 59.563 55.000 14.12 0.00 0.00 4.79
2439 2624 1.949525 GCACCCTACGTACCGATCTAA 59.050 52.381 0.00 0.00 0.00 2.10
2446 2631 1.755179 TCTAGTGCACCCTACGTACC 58.245 55.000 14.63 0.00 0.00 3.34
2721 2966 8.267183 ACAGGAAATTCAAAGGAAAGAAAACAT 58.733 29.630 0.00 0.00 36.43 2.71
2764 3009 1.741401 CACCGCGCAGGAATTCTGA 60.741 57.895 22.10 0.00 46.18 3.27
2863 3111 1.543429 GGCTTGAAGTGCTGGTGTACT 60.543 52.381 0.00 0.00 40.83 2.73
2867 3115 1.271054 ACTAGGCTTGAAGTGCTGGTG 60.271 52.381 2.20 0.00 0.00 4.17
2925 3173 1.237285 ACATTCCTTGCGACAGCCAC 61.237 55.000 0.00 0.00 44.33 5.01
3248 3497 4.378459 GGATTAAAACGGAGACTGCACTTG 60.378 45.833 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.