Multiple sequence alignment - TraesCS3B01G499200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G499200 chr3B 100.000 2708 0 0 1 2708 743814927 743812220 0.000000e+00 5001.0
1 TraesCS3B01G499200 chr3B 78.983 295 46 8 1042 1332 779525027 779525309 1.280000e-43 187.0
2 TraesCS3B01G499200 chr3D 91.311 1266 74 12 493 1732 559917150 559915895 0.000000e+00 1696.0
3 TraesCS3B01G499200 chr3D 92.632 855 43 8 889 1732 559937542 559936697 0.000000e+00 1212.0
4 TraesCS3B01G499200 chr3D 87.029 478 37 8 1 472 559938365 559937907 1.440000e-142 516.0
5 TraesCS3B01G499200 chr3D 86.874 419 37 9 61 471 559917613 559917205 1.140000e-123 453.0
6 TraesCS3B01G499200 chr3D 93.401 197 12 1 493 688 559937853 559937657 9.490000e-75 291.0
7 TraesCS3B01G499200 chr3D 80.464 302 45 8 1011 1311 582162726 582162438 4.540000e-53 219.0
8 TraesCS3B01G499200 chr3D 79.403 335 43 14 990 1314 582817171 582816853 2.110000e-51 213.0
9 TraesCS3B01G499200 chr3D 79.392 296 43 11 1042 1332 582056815 582056533 2.750000e-45 193.0
10 TraesCS3B01G499200 chr3D 98.077 52 1 0 706 757 559937661 559937610 1.030000e-14 91.6
11 TraesCS3B01G499200 chr3D 97.222 36 1 0 1743 1778 590848699 590848664 8.100000e-06 62.1
12 TraesCS3B01G499200 chr3D 100.000 32 0 0 830 861 559937579 559937548 2.910000e-05 60.2
13 TraesCS3B01G499200 chr3D 97.059 34 1 0 1744 1777 53818736 53818703 1.050000e-04 58.4
14 TraesCS3B01G499200 chr3A 92.694 917 57 6 823 1732 696168338 696167425 0.000000e+00 1314.0
15 TraesCS3B01G499200 chr3A 93.214 501 29 4 1235 1732 628874576 628874078 0.000000e+00 732.0
16 TraesCS3B01G499200 chr3A 90.376 426 33 4 823 1241 628875287 628874863 1.100000e-153 553.0
17 TraesCS3B01G499200 chr3A 89.299 271 20 2 493 755 628875900 628875631 5.590000e-87 331.0
18 TraesCS3B01G499200 chr3A 89.299 271 20 2 493 755 696168950 696168681 5.590000e-87 331.0
19 TraesCS3B01G499200 chr2A 90.441 680 57 5 2030 2708 381708638 381707966 0.000000e+00 889.0
20 TraesCS3B01G499200 chr5B 81.891 624 97 13 2066 2680 30878185 30878801 1.860000e-141 512.0
21 TraesCS3B01G499200 chr5B 94.872 39 1 1 1742 1779 696705502 696705464 2.910000e-05 60.2
22 TraesCS3B01G499200 chr4A 79.939 653 97 22 2078 2702 17843212 17843858 1.480000e-122 449.0
23 TraesCS3B01G499200 chr4A 82.051 234 33 6 1054 1284 24758566 24758793 9.900000e-45 191.0
24 TraesCS3B01G499200 chr4A 94.737 38 1 1 1742 1778 614602195 614602158 1.050000e-04 58.4
25 TraesCS3B01G499200 chr2D 90.123 81 8 0 2056 2136 2736801 2736881 3.690000e-19 106.0
26 TraesCS3B01G499200 chr7A 97.143 35 1 0 1745 1779 564254974 564254940 2.910000e-05 60.2
27 TraesCS3B01G499200 chr2B 97.143 35 1 0 1745 1779 673264025 673263991 2.910000e-05 60.2
28 TraesCS3B01G499200 chr6B 94.737 38 1 1 1742 1778 679396754 679396791 1.050000e-04 58.4
29 TraesCS3B01G499200 chr5D 94.737 38 1 1 1742 1778 519706087 519706124 1.050000e-04 58.4
30 TraesCS3B01G499200 chr1D 94.737 38 1 1 1742 1778 106291679 106291642 1.050000e-04 58.4
31 TraesCS3B01G499200 chr4D 97.059 34 0 1 1785 1818 329659200 329659232 3.770000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G499200 chr3B 743812220 743814927 2707 True 5001.000000 5001 100.0000 1 2708 1 chr3B.!!$R1 2707
1 TraesCS3B01G499200 chr3D 559915895 559917613 1718 True 1074.500000 1696 89.0925 61 1732 2 chr3D.!!$R6 1671
2 TraesCS3B01G499200 chr3D 559936697 559938365 1668 True 434.160000 1212 94.2278 1 1732 5 chr3D.!!$R7 1731
3 TraesCS3B01G499200 chr3A 696167425 696168950 1525 True 822.500000 1314 90.9965 493 1732 2 chr3A.!!$R2 1239
4 TraesCS3B01G499200 chr3A 628874078 628875900 1822 True 538.666667 732 90.9630 493 1732 3 chr3A.!!$R1 1239
5 TraesCS3B01G499200 chr2A 381707966 381708638 672 True 889.000000 889 90.4410 2030 2708 1 chr2A.!!$R1 678
6 TraesCS3B01G499200 chr5B 30878185 30878801 616 False 512.000000 512 81.8910 2066 2680 1 chr5B.!!$F1 614
7 TraesCS3B01G499200 chr4A 17843212 17843858 646 False 449.000000 449 79.9390 2078 2702 1 chr4A.!!$F1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 475 0.314935 CACGGGCTCTGTTGCAAAAT 59.685 50.0 0.0 0.0 34.04 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 2556 0.029567 TTACGTGCAAAGCGTTTGGG 59.97 50.0 6.14 0.0 42.85 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.287977 TCATGATCCGGGTCGATAGT 57.712 50.000 10.84 0.00 37.40 2.12
54 55 1.047801 GGATCCTGCTCCTCTCTTCC 58.952 60.000 3.84 0.00 32.18 3.46
95 97 3.058160 AAAAGCGCCGCATGAGCT 61.058 55.556 13.36 0.00 43.90 4.09
200 202 1.628340 CCACCACCCAGTCATCTTGTA 59.372 52.381 0.00 0.00 0.00 2.41
233 235 3.357079 GTCAACGTGCCCAGCCTG 61.357 66.667 0.00 0.00 0.00 4.85
253 255 3.073678 TGCTGTCAGCGTGATATTTTGT 58.926 40.909 19.68 0.00 46.26 2.83
306 308 1.005394 GTCACCCGTGGATCGTGTT 60.005 57.895 0.00 0.00 37.94 3.32
316 318 1.080093 GATCGTGTTGCCGGAGACA 60.080 57.895 5.05 5.82 0.00 3.41
326 328 1.739562 CCGGAGACAAGCAGAGCAC 60.740 63.158 0.00 0.00 0.00 4.40
366 373 2.109799 CTCAGCCCGGCGATCAAT 59.890 61.111 9.30 0.00 0.00 2.57
368 375 0.946221 CTCAGCCCGGCGATCAATAC 60.946 60.000 9.30 0.00 0.00 1.89
426 435 2.214216 ACCGCAACCTCTACAGCCA 61.214 57.895 0.00 0.00 0.00 4.75
466 475 0.314935 CACGGGCTCTGTTGCAAAAT 59.685 50.000 0.00 0.00 34.04 1.82
471 480 4.054671 CGGGCTCTGTTGCAAAATAAAAA 58.945 39.130 0.00 0.00 34.04 1.94
498 539 0.592637 TTCTGCAACATGAGCAACGG 59.407 50.000 16.05 7.40 42.17 4.44
503 544 0.518636 CAACATGAGCAACGGTCAGG 59.481 55.000 0.00 6.32 45.36 3.86
505 546 1.672030 CATGAGCAACGGTCAGGCA 60.672 57.895 2.11 0.00 43.30 4.75
516 557 1.517257 GTCAGGCACTCGATGACGG 60.517 63.158 0.67 0.00 43.63 4.79
519 560 2.434185 GGCACTCGATGACGGCAA 60.434 61.111 0.00 0.00 40.21 4.52
611 652 4.574828 GCTTAGGCTTTATGGATCGACAAA 59.425 41.667 0.00 0.00 35.22 2.83
619 660 7.250569 GCTTTATGGATCGACAAAGAATTCAA 58.749 34.615 12.11 0.00 31.11 2.69
633 674 6.618287 AAGAATTCAAACGTCATGTCAGAA 57.382 33.333 8.44 0.00 0.00 3.02
683 732 1.880027 GGCAGTGGGTAAACAGACTTG 59.120 52.381 0.00 0.00 0.00 3.16
684 733 2.486548 GGCAGTGGGTAAACAGACTTGA 60.487 50.000 0.00 0.00 0.00 3.02
685 734 2.808543 GCAGTGGGTAAACAGACTTGAG 59.191 50.000 0.00 0.00 0.00 3.02
686 735 2.808543 CAGTGGGTAAACAGACTTGAGC 59.191 50.000 0.00 0.00 0.00 4.26
687 736 2.438021 AGTGGGTAAACAGACTTGAGCA 59.562 45.455 0.00 0.00 0.00 4.26
688 737 3.118038 AGTGGGTAAACAGACTTGAGCAA 60.118 43.478 0.00 0.00 0.00 3.91
689 738 3.251004 GTGGGTAAACAGACTTGAGCAAG 59.749 47.826 8.60 8.60 43.79 4.01
690 739 3.135712 TGGGTAAACAGACTTGAGCAAGA 59.864 43.478 16.47 0.00 40.79 3.02
691 740 3.498777 GGGTAAACAGACTTGAGCAAGAC 59.501 47.826 16.47 10.46 40.79 3.01
692 741 4.127171 GGTAAACAGACTTGAGCAAGACA 58.873 43.478 16.47 0.00 40.79 3.41
693 742 4.574828 GGTAAACAGACTTGAGCAAGACAA 59.425 41.667 16.47 0.00 40.79 3.18
694 743 4.622701 AAACAGACTTGAGCAAGACAAC 57.377 40.909 16.47 5.60 40.79 3.32
695 744 2.205074 ACAGACTTGAGCAAGACAACG 58.795 47.619 16.47 6.32 40.79 4.10
696 745 2.159099 ACAGACTTGAGCAAGACAACGA 60.159 45.455 16.47 0.00 40.79 3.85
697 746 2.474359 CAGACTTGAGCAAGACAACGAG 59.526 50.000 16.47 0.00 40.79 4.18
698 747 2.362397 AGACTTGAGCAAGACAACGAGA 59.638 45.455 16.47 0.00 40.79 4.04
699 748 3.123804 GACTTGAGCAAGACAACGAGAA 58.876 45.455 16.47 0.00 40.79 2.87
700 749 2.866762 ACTTGAGCAAGACAACGAGAAC 59.133 45.455 16.47 0.00 40.79 3.01
701 750 1.865865 TGAGCAAGACAACGAGAACC 58.134 50.000 0.00 0.00 0.00 3.62
702 751 1.138069 TGAGCAAGACAACGAGAACCA 59.862 47.619 0.00 0.00 0.00 3.67
703 752 1.795286 GAGCAAGACAACGAGAACCAG 59.205 52.381 0.00 0.00 0.00 4.00
704 753 0.868406 GCAAGACAACGAGAACCAGG 59.132 55.000 0.00 0.00 0.00 4.45
739 809 1.941209 GCATCAGCTTCTCCGTCACAA 60.941 52.381 0.00 0.00 37.91 3.33
757 827 2.564947 ACAACAAACTTCAGCAAACCCA 59.435 40.909 0.00 0.00 0.00 4.51
758 828 3.197549 ACAACAAACTTCAGCAAACCCAT 59.802 39.130 0.00 0.00 0.00 4.00
760 830 3.030291 ACAAACTTCAGCAAACCCATGA 58.970 40.909 0.00 0.00 0.00 3.07
761 831 3.450457 ACAAACTTCAGCAAACCCATGAA 59.550 39.130 0.00 0.00 0.00 2.57
763 833 5.304101 ACAAACTTCAGCAAACCCATGAATA 59.696 36.000 0.00 0.00 32.82 1.75
796 889 1.056125 TGTCCCATGATCCCATCGCT 61.056 55.000 0.00 0.00 0.00 4.93
805 898 3.239449 TGATCCCATCGCTACCAAGTAT 58.761 45.455 0.00 0.00 0.00 2.12
806 899 4.412843 TGATCCCATCGCTACCAAGTATA 58.587 43.478 0.00 0.00 0.00 1.47
807 900 5.023452 TGATCCCATCGCTACCAAGTATAT 58.977 41.667 0.00 0.00 0.00 0.86
808 901 4.801330 TCCCATCGCTACCAAGTATATG 57.199 45.455 0.00 0.00 0.00 1.78
809 902 4.157246 TCCCATCGCTACCAAGTATATGT 58.843 43.478 0.00 0.00 0.00 2.29
810 903 5.326900 TCCCATCGCTACCAAGTATATGTA 58.673 41.667 0.00 0.00 0.00 2.29
811 904 5.417894 TCCCATCGCTACCAAGTATATGTAG 59.582 44.000 0.00 0.00 36.02 2.74
876 1230 6.952935 GACTTGATGTCGTCAGTAGAAAAT 57.047 37.500 1.51 0.00 38.29 1.82
877 1231 7.352719 GACTTGATGTCGTCAGTAGAAAATT 57.647 36.000 1.51 0.00 38.29 1.82
878 1232 7.121974 ACTTGATGTCGTCAGTAGAAAATTG 57.878 36.000 1.51 0.00 38.29 2.32
879 1233 6.929049 ACTTGATGTCGTCAGTAGAAAATTGA 59.071 34.615 1.51 0.00 38.29 2.57
880 1234 6.951256 TGATGTCGTCAGTAGAAAATTGAG 57.049 37.500 0.00 0.00 31.80 3.02
881 1235 6.455647 TGATGTCGTCAGTAGAAAATTGAGT 58.544 36.000 0.00 0.00 31.80 3.41
882 1236 6.366061 TGATGTCGTCAGTAGAAAATTGAGTG 59.634 38.462 0.00 0.00 31.80 3.51
883 1237 5.597806 TGTCGTCAGTAGAAAATTGAGTGT 58.402 37.500 0.00 0.00 0.00 3.55
884 1238 6.046593 TGTCGTCAGTAGAAAATTGAGTGTT 58.953 36.000 0.00 0.00 0.00 3.32
885 1239 6.537301 TGTCGTCAGTAGAAAATTGAGTGTTT 59.463 34.615 0.00 0.00 0.00 2.83
886 1240 6.846283 GTCGTCAGTAGAAAATTGAGTGTTTG 59.154 38.462 0.00 0.00 0.00 2.93
887 1241 6.759356 TCGTCAGTAGAAAATTGAGTGTTTGA 59.241 34.615 0.00 0.00 0.00 2.69
1167 1556 1.003718 CCCCGTCCACAAGAAGGTC 60.004 63.158 0.00 0.00 42.19 3.85
1251 1936 1.211190 GTACGTCGACGAGGCCTTT 59.789 57.895 41.52 21.28 43.02 3.11
1363 2048 3.158537 TTCAAGGCGCTGTGGACGA 62.159 57.895 7.64 0.00 0.00 4.20
1432 2117 4.519437 CGCTCATGGAGGCGCAGA 62.519 66.667 10.83 0.00 44.64 4.26
1440 2125 4.925861 GAGGCGCAGATGGAGGGC 62.926 72.222 10.83 0.00 43.37 5.19
1671 2356 3.508840 GCGGCAATGAAGGACCGG 61.509 66.667 0.00 0.00 45.72 5.28
1675 2360 0.322546 GGCAATGAAGGACCGGTTCT 60.323 55.000 10.55 10.55 0.00 3.01
1699 2384 0.037975 CCTTGCCAAGTCAATGCACC 60.038 55.000 3.37 0.00 34.16 5.01
1723 2408 7.923878 ACCAGAAATAACACCAAAATTGTACAC 59.076 33.333 0.00 0.00 0.00 2.90
1724 2409 7.383843 CCAGAAATAACACCAAAATTGTACACC 59.616 37.037 0.00 0.00 0.00 4.16
1725 2410 7.114247 CAGAAATAACACCAAAATTGTACACCG 59.886 37.037 0.00 0.00 0.00 4.94
1726 2411 6.636562 AATAACACCAAAATTGTACACCGA 57.363 33.333 0.00 0.00 0.00 4.69
1728 2413 4.295857 ACACCAAAATTGTACACCGAAC 57.704 40.909 0.00 0.00 0.00 3.95
1729 2414 3.695060 ACACCAAAATTGTACACCGAACA 59.305 39.130 0.00 0.00 0.00 3.18
1730 2415 4.339814 ACACCAAAATTGTACACCGAACAT 59.660 37.500 0.00 0.00 0.00 2.71
1731 2416 5.163499 ACACCAAAATTGTACACCGAACATT 60.163 36.000 0.00 0.00 0.00 2.71
1732 2417 6.039493 ACACCAAAATTGTACACCGAACATTA 59.961 34.615 0.00 0.00 0.00 1.90
1733 2418 6.580791 CACCAAAATTGTACACCGAACATTAG 59.419 38.462 0.00 0.00 0.00 1.73
1734 2419 6.263617 ACCAAAATTGTACACCGAACATTAGT 59.736 34.615 0.00 0.00 0.00 2.24
1735 2420 7.444792 ACCAAAATTGTACACCGAACATTAGTA 59.555 33.333 0.00 0.00 0.00 1.82
1736 2421 8.291032 CCAAAATTGTACACCGAACATTAGTAA 58.709 33.333 0.00 0.00 0.00 2.24
1737 2422 9.666626 CAAAATTGTACACCGAACATTAGTAAA 57.333 29.630 0.00 0.00 0.00 2.01
1741 2426 9.834628 ATTGTACACCGAACATTAGTAAATTTG 57.165 29.630 0.00 0.00 0.00 2.32
1742 2427 8.604640 TGTACACCGAACATTAGTAAATTTGA 57.395 30.769 0.00 0.00 0.00 2.69
1743 2428 9.221933 TGTACACCGAACATTAGTAAATTTGAT 57.778 29.630 0.00 0.00 0.00 2.57
1745 2430 8.964420 ACACCGAACATTAGTAAATTTGATTG 57.036 30.769 0.00 0.00 0.00 2.67
1746 2431 8.788806 ACACCGAACATTAGTAAATTTGATTGA 58.211 29.630 0.00 0.00 0.00 2.57
1747 2432 9.061610 CACCGAACATTAGTAAATTTGATTGAC 57.938 33.333 0.00 0.00 0.00 3.18
1748 2433 7.960738 ACCGAACATTAGTAAATTTGATTGACG 59.039 33.333 0.00 0.00 0.00 4.35
1749 2434 7.428183 CCGAACATTAGTAAATTTGATTGACGG 59.572 37.037 0.00 0.00 0.00 4.79
1750 2435 7.428183 CGAACATTAGTAAATTTGATTGACGGG 59.572 37.037 0.00 0.00 0.00 5.28
1751 2436 7.931578 ACATTAGTAAATTTGATTGACGGGA 57.068 32.000 0.00 0.00 0.00 5.14
1752 2437 8.519799 ACATTAGTAAATTTGATTGACGGGAT 57.480 30.769 0.00 0.00 0.00 3.85
1753 2438 8.966868 ACATTAGTAAATTTGATTGACGGGATT 58.033 29.630 0.00 0.00 0.00 3.01
1754 2439 9.450807 CATTAGTAAATTTGATTGACGGGATTC 57.549 33.333 0.00 0.00 0.00 2.52
1755 2440 8.801882 TTAGTAAATTTGATTGACGGGATTCT 57.198 30.769 0.00 0.00 0.00 2.40
1756 2441 7.703058 AGTAAATTTGATTGACGGGATTCTT 57.297 32.000 0.00 0.00 0.00 2.52
1757 2442 7.762382 AGTAAATTTGATTGACGGGATTCTTC 58.238 34.615 0.00 0.00 0.00 2.87
1758 2443 6.840780 AAATTTGATTGACGGGATTCTTCT 57.159 33.333 0.00 0.00 0.00 2.85
1759 2444 6.840780 AATTTGATTGACGGGATTCTTCTT 57.159 33.333 0.00 0.00 0.00 2.52
1760 2445 7.938140 AATTTGATTGACGGGATTCTTCTTA 57.062 32.000 0.00 0.00 0.00 2.10
1761 2446 7.938140 ATTTGATTGACGGGATTCTTCTTAA 57.062 32.000 0.00 0.00 0.00 1.85
1762 2447 7.938140 TTTGATTGACGGGATTCTTCTTAAT 57.062 32.000 0.00 0.00 0.00 1.40
1763 2448 9.627123 ATTTGATTGACGGGATTCTTCTTAATA 57.373 29.630 0.00 0.00 0.00 0.98
1764 2449 8.662781 TTGATTGACGGGATTCTTCTTAATAG 57.337 34.615 0.00 0.00 0.00 1.73
1765 2450 7.792032 TGATTGACGGGATTCTTCTTAATAGT 58.208 34.615 0.00 0.00 0.00 2.12
1766 2451 7.710907 TGATTGACGGGATTCTTCTTAATAGTG 59.289 37.037 0.00 0.00 0.00 2.74
1767 2452 6.540438 TGACGGGATTCTTCTTAATAGTGT 57.460 37.500 0.00 0.00 0.00 3.55
1768 2453 6.942976 TGACGGGATTCTTCTTAATAGTGTT 58.057 36.000 0.00 0.00 0.00 3.32
1769 2454 7.039882 TGACGGGATTCTTCTTAATAGTGTTC 58.960 38.462 0.00 0.00 0.00 3.18
1770 2455 6.346896 ACGGGATTCTTCTTAATAGTGTTCC 58.653 40.000 0.00 0.00 0.00 3.62
1771 2456 5.462398 CGGGATTCTTCTTAATAGTGTTCCG 59.538 44.000 0.00 0.00 0.00 4.30
1772 2457 5.236695 GGGATTCTTCTTAATAGTGTTCCGC 59.763 44.000 0.00 0.00 0.00 5.54
1773 2458 5.236695 GGATTCTTCTTAATAGTGTTCCGCC 59.763 44.000 0.00 0.00 0.00 6.13
1774 2459 4.133013 TCTTCTTAATAGTGTTCCGCCC 57.867 45.455 0.00 0.00 0.00 6.13
1775 2460 3.773119 TCTTCTTAATAGTGTTCCGCCCT 59.227 43.478 0.00 0.00 0.00 5.19
1776 2461 3.536956 TCTTAATAGTGTTCCGCCCTG 57.463 47.619 0.00 0.00 0.00 4.45
1777 2462 1.940613 CTTAATAGTGTTCCGCCCTGC 59.059 52.381 0.00 0.00 0.00 4.85
1778 2463 0.906066 TAATAGTGTTCCGCCCTGCA 59.094 50.000 0.00 0.00 0.00 4.41
1779 2464 0.676782 AATAGTGTTCCGCCCTGCAC 60.677 55.000 0.00 0.00 0.00 4.57
1780 2465 2.536997 ATAGTGTTCCGCCCTGCACC 62.537 60.000 0.00 0.00 0.00 5.01
1781 2466 4.947147 GTGTTCCGCCCTGCACCA 62.947 66.667 0.00 0.00 0.00 4.17
1782 2467 3.965258 TGTTCCGCCCTGCACCAT 61.965 61.111 0.00 0.00 0.00 3.55
1783 2468 2.270850 GTTCCGCCCTGCACCATA 59.729 61.111 0.00 0.00 0.00 2.74
1784 2469 1.152963 GTTCCGCCCTGCACCATAT 60.153 57.895 0.00 0.00 0.00 1.78
1785 2470 0.107831 GTTCCGCCCTGCACCATATA 59.892 55.000 0.00 0.00 0.00 0.86
1786 2471 0.840617 TTCCGCCCTGCACCATATAA 59.159 50.000 0.00 0.00 0.00 0.98
1787 2472 1.064003 TCCGCCCTGCACCATATAAT 58.936 50.000 0.00 0.00 0.00 1.28
1788 2473 2.261729 TCCGCCCTGCACCATATAATA 58.738 47.619 0.00 0.00 0.00 0.98
1789 2474 2.640332 TCCGCCCTGCACCATATAATAA 59.360 45.455 0.00 0.00 0.00 1.40
1790 2475 2.747446 CCGCCCTGCACCATATAATAAC 59.253 50.000 0.00 0.00 0.00 1.89
1791 2476 2.747446 CGCCCTGCACCATATAATAACC 59.253 50.000 0.00 0.00 0.00 2.85
1792 2477 3.559171 CGCCCTGCACCATATAATAACCT 60.559 47.826 0.00 0.00 0.00 3.50
1793 2478 4.407365 GCCCTGCACCATATAATAACCTT 58.593 43.478 0.00 0.00 0.00 3.50
1794 2479 5.566469 GCCCTGCACCATATAATAACCTTA 58.434 41.667 0.00 0.00 0.00 2.69
1795 2480 6.187682 GCCCTGCACCATATAATAACCTTAT 58.812 40.000 0.00 0.00 0.00 1.73
1796 2481 6.663523 GCCCTGCACCATATAATAACCTTATT 59.336 38.462 0.00 0.00 37.19 1.40
1797 2482 7.832187 GCCCTGCACCATATAATAACCTTATTA 59.168 37.037 0.97 0.97 39.25 0.98
1798 2483 9.747898 CCCTGCACCATATAATAACCTTATTAA 57.252 33.333 2.38 0.00 38.63 1.40
1837 2522 8.831550 TGGAGGTTTTACAAAAATAAATTGTGC 58.168 29.630 2.37 0.00 40.95 4.57
1838 2523 8.286800 GGAGGTTTTACAAAAATAAATTGTGCC 58.713 33.333 2.37 0.78 40.95 5.01
1839 2524 8.738645 AGGTTTTACAAAAATAAATTGTGCCA 57.261 26.923 2.37 0.00 40.95 4.92
1840 2525 9.178758 AGGTTTTACAAAAATAAATTGTGCCAA 57.821 25.926 2.37 0.00 40.95 4.52
1841 2526 9.788960 GGTTTTACAAAAATAAATTGTGCCAAA 57.211 25.926 2.37 0.00 40.95 3.28
1846 2531 8.853469 ACAAAAATAAATTGTGCCAAACATTG 57.147 26.923 0.00 0.00 39.43 2.82
1847 2532 8.465201 ACAAAAATAAATTGTGCCAAACATTGT 58.535 25.926 0.00 0.00 39.43 2.71
1848 2533 9.298774 CAAAAATAAATTGTGCCAAACATTGTT 57.701 25.926 0.00 0.00 38.99 2.83
1849 2534 8.853469 AAAATAAATTGTGCCAAACATTGTTG 57.147 26.923 2.13 0.00 38.99 3.33
1850 2535 3.967203 AATTGTGCCAAACATTGTTGC 57.033 38.095 2.13 3.94 38.99 4.17
1851 2536 1.284657 TTGTGCCAAACATTGTTGCG 58.715 45.000 2.13 0.00 38.99 4.85
1852 2537 0.174389 TGTGCCAAACATTGTTGCGT 59.826 45.000 2.13 0.00 32.36 5.24
1853 2538 0.576328 GTGCCAAACATTGTTGCGTG 59.424 50.000 2.13 0.00 0.00 5.34
1854 2539 0.174389 TGCCAAACATTGTTGCGTGT 59.826 45.000 2.13 0.00 0.00 4.49
1855 2540 0.576328 GCCAAACATTGTTGCGTGTG 59.424 50.000 2.13 0.00 0.00 3.82
1856 2541 1.919918 CCAAACATTGTTGCGTGTGT 58.080 45.000 2.13 0.00 0.00 3.72
1857 2542 2.796383 GCCAAACATTGTTGCGTGTGTA 60.796 45.455 2.13 0.00 0.00 2.90
1858 2543 3.042189 CCAAACATTGTTGCGTGTGTAG 58.958 45.455 2.13 0.00 0.00 2.74
1859 2544 3.488384 CCAAACATTGTTGCGTGTGTAGT 60.488 43.478 2.13 0.00 0.00 2.73
1860 2545 3.332761 AACATTGTTGCGTGTGTAGTG 57.667 42.857 0.15 0.00 0.00 2.74
1861 2546 2.285083 ACATTGTTGCGTGTGTAGTGT 58.715 42.857 0.00 0.00 0.00 3.55
1862 2547 2.031560 ACATTGTTGCGTGTGTAGTGTG 59.968 45.455 0.00 0.00 0.00 3.82
1863 2548 2.011540 TTGTTGCGTGTGTAGTGTGA 57.988 45.000 0.00 0.00 0.00 3.58
1864 2549 1.566404 TGTTGCGTGTGTAGTGTGAG 58.434 50.000 0.00 0.00 0.00 3.51
1865 2550 1.134936 TGTTGCGTGTGTAGTGTGAGT 60.135 47.619 0.00 0.00 0.00 3.41
1866 2551 1.931172 GTTGCGTGTGTAGTGTGAGTT 59.069 47.619 0.00 0.00 0.00 3.01
1867 2552 1.847818 TGCGTGTGTAGTGTGAGTTC 58.152 50.000 0.00 0.00 0.00 3.01
1868 2553 1.407618 TGCGTGTGTAGTGTGAGTTCT 59.592 47.619 0.00 0.00 0.00 3.01
1869 2554 1.787155 GCGTGTGTAGTGTGAGTTCTG 59.213 52.381 0.00 0.00 0.00 3.02
1870 2555 2.543031 GCGTGTGTAGTGTGAGTTCTGA 60.543 50.000 0.00 0.00 0.00 3.27
1871 2556 3.043586 CGTGTGTAGTGTGAGTTCTGAC 58.956 50.000 0.00 0.00 0.00 3.51
1872 2557 3.381949 GTGTGTAGTGTGAGTTCTGACC 58.618 50.000 0.00 0.00 0.00 4.02
1873 2558 2.364324 TGTGTAGTGTGAGTTCTGACCC 59.636 50.000 0.00 0.00 0.00 4.46
1874 2559 2.364324 GTGTAGTGTGAGTTCTGACCCA 59.636 50.000 0.00 0.00 0.00 4.51
1875 2560 3.035363 TGTAGTGTGAGTTCTGACCCAA 58.965 45.455 0.00 0.00 0.00 4.12
1876 2561 3.452990 TGTAGTGTGAGTTCTGACCCAAA 59.547 43.478 0.00 0.00 0.00 3.28
1877 2562 2.919228 AGTGTGAGTTCTGACCCAAAC 58.081 47.619 0.00 0.00 0.00 2.93
1878 2563 1.597663 GTGTGAGTTCTGACCCAAACG 59.402 52.381 0.00 0.00 0.00 3.60
1879 2564 0.586802 GTGAGTTCTGACCCAAACGC 59.413 55.000 0.00 0.00 0.00 4.84
1880 2565 0.468226 TGAGTTCTGACCCAAACGCT 59.532 50.000 0.00 0.00 0.00 5.07
1881 2566 1.134220 TGAGTTCTGACCCAAACGCTT 60.134 47.619 0.00 0.00 0.00 4.68
1882 2567 1.947456 GAGTTCTGACCCAAACGCTTT 59.053 47.619 0.00 0.00 0.00 3.51
1883 2568 1.676006 AGTTCTGACCCAAACGCTTTG 59.324 47.619 4.20 4.20 40.32 2.77
1884 2569 0.383949 TTCTGACCCAAACGCTTTGC 59.616 50.000 5.33 0.00 39.31 3.68
1885 2570 0.749818 TCTGACCCAAACGCTTTGCA 60.750 50.000 5.33 0.00 39.31 4.08
1886 2571 0.594796 CTGACCCAAACGCTTTGCAC 60.595 55.000 0.00 1.46 39.31 4.57
1887 2572 1.657181 GACCCAAACGCTTTGCACG 60.657 57.895 0.00 0.00 39.31 5.34
1889 2574 1.096386 ACCCAAACGCTTTGCACGTA 61.096 50.000 0.93 0.00 44.30 3.57
1890 2575 0.029567 CCCAAACGCTTTGCACGTAA 59.970 50.000 0.93 0.00 44.30 3.18
1891 2576 1.534175 CCCAAACGCTTTGCACGTAAA 60.534 47.619 0.93 0.00 44.30 2.01
1892 2577 2.389998 CCAAACGCTTTGCACGTAAAT 58.610 42.857 0.93 0.00 44.30 1.40
1893 2578 3.556513 CCAAACGCTTTGCACGTAAATA 58.443 40.909 0.93 0.00 44.30 1.40
1894 2579 3.975670 CCAAACGCTTTGCACGTAAATAA 59.024 39.130 0.93 0.00 44.30 1.40
1895 2580 4.441415 CCAAACGCTTTGCACGTAAATAAA 59.559 37.500 0.93 0.00 44.30 1.40
1896 2581 5.117897 CCAAACGCTTTGCACGTAAATAAAT 59.882 36.000 0.93 0.00 44.30 1.40
1897 2582 6.346199 CCAAACGCTTTGCACGTAAATAAATT 60.346 34.615 0.93 0.00 44.30 1.82
1898 2583 7.148950 CCAAACGCTTTGCACGTAAATAAATTA 60.149 33.333 0.93 0.00 44.30 1.40
1899 2584 7.487180 AACGCTTTGCACGTAAATAAATTAG 57.513 32.000 0.93 0.00 44.30 1.73
1900 2585 6.604930 ACGCTTTGCACGTAAATAAATTAGT 58.395 32.000 0.00 0.00 43.02 2.24
1901 2586 7.741198 ACGCTTTGCACGTAAATAAATTAGTA 58.259 30.769 0.00 0.00 43.02 1.82
1902 2587 8.392612 ACGCTTTGCACGTAAATAAATTAGTAT 58.607 29.630 0.00 0.00 43.02 2.12
1903 2588 9.852481 CGCTTTGCACGTAAATAAATTAGTATA 57.148 29.630 0.00 0.00 0.00 1.47
1930 2615 9.528018 TGTTTTCAATAAAGGTCAATCAAAGTC 57.472 29.630 0.00 0.00 0.00 3.01
1931 2616 9.750125 GTTTTCAATAAAGGTCAATCAAAGTCT 57.250 29.630 0.00 0.00 0.00 3.24
1932 2617 9.965824 TTTTCAATAAAGGTCAATCAAAGTCTC 57.034 29.630 0.00 0.00 0.00 3.36
1933 2618 8.924511 TTCAATAAAGGTCAATCAAAGTCTCT 57.075 30.769 0.00 0.00 0.00 3.10
1934 2619 8.553459 TCAATAAAGGTCAATCAAAGTCTCTC 57.447 34.615 0.00 0.00 0.00 3.20
1935 2620 8.156820 TCAATAAAGGTCAATCAAAGTCTCTCA 58.843 33.333 0.00 0.00 0.00 3.27
1936 2621 7.913674 ATAAAGGTCAATCAAAGTCTCTCAC 57.086 36.000 0.00 0.00 0.00 3.51
1937 2622 4.963318 AGGTCAATCAAAGTCTCTCACA 57.037 40.909 0.00 0.00 0.00 3.58
1938 2623 5.296151 AGGTCAATCAAAGTCTCTCACAA 57.704 39.130 0.00 0.00 0.00 3.33
1939 2624 5.059833 AGGTCAATCAAAGTCTCTCACAAC 58.940 41.667 0.00 0.00 0.00 3.32
1940 2625 4.084328 GGTCAATCAAAGTCTCTCACAACG 60.084 45.833 0.00 0.00 0.00 4.10
1941 2626 4.508124 GTCAATCAAAGTCTCTCACAACGT 59.492 41.667 0.00 0.00 0.00 3.99
1942 2627 5.690409 GTCAATCAAAGTCTCTCACAACGTA 59.310 40.000 0.00 0.00 0.00 3.57
1943 2628 6.200286 GTCAATCAAAGTCTCTCACAACGTAA 59.800 38.462 0.00 0.00 0.00 3.18
1944 2629 6.759356 TCAATCAAAGTCTCTCACAACGTAAA 59.241 34.615 0.00 0.00 0.00 2.01
1945 2630 7.279090 TCAATCAAAGTCTCTCACAACGTAAAA 59.721 33.333 0.00 0.00 0.00 1.52
1946 2631 6.971527 TCAAAGTCTCTCACAACGTAAAAA 57.028 33.333 0.00 0.00 0.00 1.94
1968 2653 8.723942 AAAAATTATATATTTGGCCGTTGCAA 57.276 26.923 0.00 0.00 40.13 4.08
1969 2654 8.900983 AAAATTATATATTTGGCCGTTGCAAT 57.099 26.923 0.59 0.00 40.13 3.56
1970 2655 9.988815 AAAATTATATATTTGGCCGTTGCAATA 57.011 25.926 0.59 0.00 40.13 1.90
1971 2656 9.988815 AAATTATATATTTGGCCGTTGCAATAA 57.011 25.926 0.59 0.00 40.13 1.40
1972 2657 8.980143 ATTATATATTTGGCCGTTGCAATAAC 57.020 30.769 0.59 0.00 40.13 1.89
1973 2658 6.648879 ATATATTTGGCCGTTGCAATAACT 57.351 33.333 0.59 0.00 40.13 2.24
1974 2659 3.676291 ATTTGGCCGTTGCAATAACTT 57.324 38.095 0.59 0.00 40.13 2.66
1975 2660 3.460857 TTTGGCCGTTGCAATAACTTT 57.539 38.095 0.59 0.00 40.13 2.66
1976 2661 2.430546 TGGCCGTTGCAATAACTTTG 57.569 45.000 0.59 0.00 40.13 2.77
1977 2662 1.957177 TGGCCGTTGCAATAACTTTGA 59.043 42.857 0.59 0.00 40.13 2.69
1978 2663 2.287909 TGGCCGTTGCAATAACTTTGAC 60.288 45.455 0.59 0.00 40.13 3.18
1979 2664 2.324860 GCCGTTGCAATAACTTTGACC 58.675 47.619 0.59 0.00 37.47 4.02
1980 2665 2.287909 GCCGTTGCAATAACTTTGACCA 60.288 45.455 0.59 0.00 37.47 4.02
1981 2666 3.797184 GCCGTTGCAATAACTTTGACCAA 60.797 43.478 0.59 0.00 37.47 3.67
1982 2667 3.733727 CCGTTGCAATAACTTTGACCAAC 59.266 43.478 0.59 0.00 0.00 3.77
1983 2668 3.420576 CGTTGCAATAACTTTGACCAACG 59.579 43.478 0.59 12.99 37.22 4.10
1984 2669 3.634568 TGCAATAACTTTGACCAACGG 57.365 42.857 0.00 0.00 0.00 4.44
1985 2670 2.952978 TGCAATAACTTTGACCAACGGT 59.047 40.909 0.00 0.00 39.44 4.83
1986 2671 3.381908 TGCAATAACTTTGACCAACGGTT 59.618 39.130 0.00 0.00 35.25 4.44
1987 2672 4.142138 TGCAATAACTTTGACCAACGGTTT 60.142 37.500 0.00 0.00 35.25 3.27
1988 2673 4.443063 GCAATAACTTTGACCAACGGTTTC 59.557 41.667 0.00 0.00 35.25 2.78
1989 2674 4.841443 ATAACTTTGACCAACGGTTTCC 57.159 40.909 0.00 0.00 35.25 3.13
1990 2675 2.131776 ACTTTGACCAACGGTTTCCA 57.868 45.000 0.00 0.00 35.25 3.53
1991 2676 2.661718 ACTTTGACCAACGGTTTCCAT 58.338 42.857 0.00 0.00 35.25 3.41
1992 2677 3.822940 ACTTTGACCAACGGTTTCCATA 58.177 40.909 0.00 0.00 35.25 2.74
1993 2678 4.208746 ACTTTGACCAACGGTTTCCATAA 58.791 39.130 0.00 0.00 35.25 1.90
1994 2679 4.830600 ACTTTGACCAACGGTTTCCATAAT 59.169 37.500 0.00 0.00 35.25 1.28
1995 2680 5.303333 ACTTTGACCAACGGTTTCCATAATT 59.697 36.000 0.00 0.00 35.25 1.40
1996 2681 5.793030 TTGACCAACGGTTTCCATAATTT 57.207 34.783 0.00 0.00 35.25 1.82
1997 2682 5.793030 TGACCAACGGTTTCCATAATTTT 57.207 34.783 0.00 0.00 35.25 1.82
1998 2683 6.163135 TGACCAACGGTTTCCATAATTTTT 57.837 33.333 0.00 0.00 35.25 1.94
2020 2705 7.450124 TTTTTGGCCAACGATTACTATAACA 57.550 32.000 20.35 0.00 0.00 2.41
2021 2706 7.450124 TTTTGGCCAACGATTACTATAACAA 57.550 32.000 20.35 0.97 0.00 2.83
2022 2707 7.633193 TTTGGCCAACGATTACTATAACAAT 57.367 32.000 20.35 0.00 0.00 2.71
2023 2708 7.633193 TTGGCCAACGATTACTATAACAATT 57.367 32.000 16.05 0.00 0.00 2.32
2024 2709 7.633193 TGGCCAACGATTACTATAACAATTT 57.367 32.000 0.61 0.00 0.00 1.82
2025 2710 8.057536 TGGCCAACGATTACTATAACAATTTT 57.942 30.769 0.61 0.00 0.00 1.82
2026 2711 9.175312 TGGCCAACGATTACTATAACAATTTTA 57.825 29.630 0.61 0.00 0.00 1.52
2027 2712 9.442033 GGCCAACGATTACTATAACAATTTTAC 57.558 33.333 0.00 0.00 0.00 2.01
2062 2747 1.053424 AATATGTATGGCGGACCGGT 58.947 50.000 17.22 6.92 39.70 5.28
2063 2748 1.053424 ATATGTATGGCGGACCGGTT 58.947 50.000 17.22 0.00 39.70 4.44
2069 2754 0.824182 ATGGCGGACCGGTTGAAAAA 60.824 50.000 17.22 0.00 39.70 1.94
2074 2759 2.067766 CGGACCGGTTGAAAAATACGA 58.932 47.619 9.42 0.00 0.00 3.43
2084 2769 4.118023 TGAAAAATACGACGGTCAAACG 57.882 40.909 9.10 0.00 40.31 3.60
2150 2843 4.662278 TCTTATCTTTTCCCCAACCACTG 58.338 43.478 0.00 0.00 0.00 3.66
2154 2847 1.045911 TTTTCCCCAACCACTGCCAC 61.046 55.000 0.00 0.00 0.00 5.01
2155 2848 3.783362 TTCCCCAACCACTGCCACG 62.783 63.158 0.00 0.00 0.00 4.94
2194 2887 1.348775 CCCCAATCCCCTGTCTCCTC 61.349 65.000 0.00 0.00 0.00 3.71
2195 2888 0.327000 CCCAATCCCCTGTCTCCTCT 60.327 60.000 0.00 0.00 0.00 3.69
2196 2889 1.127343 CCAATCCCCTGTCTCCTCTC 58.873 60.000 0.00 0.00 0.00 3.20
2207 2900 1.128200 TCTCCTCTCTCTCTCTCCCG 58.872 60.000 0.00 0.00 0.00 5.14
2327 3037 1.739562 GGAGTCGAACCTGCTGCTG 60.740 63.158 0.00 0.00 0.00 4.41
2418 3128 4.334118 ATGCACACCGGAGCTGCA 62.334 61.111 23.13 23.13 44.71 4.41
2445 3155 2.356553 GACCGCGTGCTACAACCA 60.357 61.111 4.92 0.00 0.00 3.67
2534 3244 2.045242 CCAGGAGCTGCATGCACT 60.045 61.111 18.46 18.58 45.94 4.40
2541 3251 2.319841 GCTGCATGCACTGACGACA 61.320 57.895 18.46 0.00 42.31 4.35
2705 3416 1.523758 CCTAGAGCTGCAACCGTTTT 58.476 50.000 1.02 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.165160 ATGCCGCCACTATCGACCC 62.165 63.158 0.00 0.00 0.00 4.46
23 24 2.113774 GGATCCATCATGCCGCCA 59.886 61.111 6.95 0.00 0.00 5.69
54 55 1.966451 GTGCCAAACACCCTCGGAG 60.966 63.158 0.00 0.00 44.02 4.63
135 137 0.033991 CGGTCTCCTCCTCCTCTTCA 60.034 60.000 0.00 0.00 0.00 3.02
229 231 0.531532 ATATCACGCTGACAGCAGGC 60.532 55.000 26.32 1.03 42.58 4.85
233 235 3.747099 ACAAAATATCACGCTGACAGC 57.253 42.857 17.84 17.84 38.02 4.40
237 239 4.503910 AGCACTACAAAATATCACGCTGA 58.496 39.130 0.00 0.00 0.00 4.26
253 255 1.799181 GCGCGAATCTGAGAAGCACTA 60.799 52.381 12.10 0.00 0.00 2.74
285 287 4.932789 CGATCCACGGGTGACATT 57.067 55.556 0.00 0.00 38.46 2.71
306 308 2.659016 CTCTGCTTGTCTCCGGCA 59.341 61.111 0.00 0.00 34.66 5.69
316 318 3.003173 TAGGGGCGTGCTCTGCTT 61.003 61.111 0.00 0.00 0.00 3.91
395 403 4.794648 GCGGTGGTGGCAGCCATA 62.795 66.667 19.75 7.39 41.08 2.74
401 409 4.947147 GAGGTTGCGGTGGTGGCA 62.947 66.667 0.00 0.00 38.93 4.92
426 435 2.283529 ATGAAGGAGACGTGCCGGT 61.284 57.895 1.90 0.00 0.00 5.28
471 480 5.177326 TGCTCATGTTGCAGAAAACTTTTT 58.823 33.333 11.00 0.00 35.31 1.94
472 481 4.757594 TGCTCATGTTGCAGAAAACTTTT 58.242 34.783 11.00 0.00 35.31 2.27
473 482 4.389890 TGCTCATGTTGCAGAAAACTTT 57.610 36.364 11.00 0.00 35.31 2.66
474 483 4.114794 GTTGCTCATGTTGCAGAAAACTT 58.885 39.130 13.72 0.00 41.71 2.66
475 484 3.709987 GTTGCTCATGTTGCAGAAAACT 58.290 40.909 13.72 0.00 41.71 2.66
476 485 2.468777 CGTTGCTCATGTTGCAGAAAAC 59.531 45.455 13.72 9.67 41.71 2.43
480 500 0.534877 ACCGTTGCTCATGTTGCAGA 60.535 50.000 13.72 5.66 41.71 4.26
487 507 1.672030 TGCCTGACCGTTGCTCATG 60.672 57.895 0.00 0.00 0.00 3.07
498 539 1.517257 CCGTCATCGAGTGCCTGAC 60.517 63.158 6.11 6.11 39.71 3.51
503 544 0.026803 GATTTGCCGTCATCGAGTGC 59.973 55.000 0.00 0.00 39.71 4.40
505 546 1.204704 TCAGATTTGCCGTCATCGAGT 59.795 47.619 0.00 0.00 39.71 4.18
516 557 2.401195 GCGAGCCGTCAGATTTGC 59.599 61.111 0.00 0.00 0.00 3.68
519 560 2.202623 GTCGCGAGCCGTCAGATT 60.203 61.111 10.24 0.00 38.35 2.40
611 652 6.618287 TTTCTGACATGACGTTTGAATTCT 57.382 33.333 7.05 0.00 0.00 2.40
619 660 1.865865 ACGCTTTCTGACATGACGTT 58.134 45.000 0.00 0.00 0.00 3.99
633 674 4.877251 TCTTGGTTTGTAGTGTAAACGCTT 59.123 37.500 0.89 0.00 38.57 4.68
683 732 1.795286 CTGGTTCTCGTTGTCTTGCTC 59.205 52.381 0.00 0.00 0.00 4.26
684 733 1.541233 CCTGGTTCTCGTTGTCTTGCT 60.541 52.381 0.00 0.00 0.00 3.91
685 734 0.868406 CCTGGTTCTCGTTGTCTTGC 59.132 55.000 0.00 0.00 0.00 4.01
686 735 1.070134 TCCCTGGTTCTCGTTGTCTTG 59.930 52.381 0.00 0.00 0.00 3.02
687 736 1.420430 TCCCTGGTTCTCGTTGTCTT 58.580 50.000 0.00 0.00 0.00 3.01
688 737 1.550976 GATCCCTGGTTCTCGTTGTCT 59.449 52.381 0.00 0.00 0.00 3.41
689 738 1.275291 TGATCCCTGGTTCTCGTTGTC 59.725 52.381 0.00 0.00 0.00 3.18
690 739 1.348064 TGATCCCTGGTTCTCGTTGT 58.652 50.000 0.00 0.00 0.00 3.32
691 740 2.698855 ATGATCCCTGGTTCTCGTTG 57.301 50.000 0.00 0.00 0.00 4.10
692 741 3.430374 CGTAATGATCCCTGGTTCTCGTT 60.430 47.826 0.00 0.00 0.00 3.85
693 742 2.100916 CGTAATGATCCCTGGTTCTCGT 59.899 50.000 0.00 0.00 0.00 4.18
694 743 2.100916 ACGTAATGATCCCTGGTTCTCG 59.899 50.000 0.00 0.00 0.00 4.04
695 744 3.821421 ACGTAATGATCCCTGGTTCTC 57.179 47.619 0.00 0.00 0.00 2.87
696 745 4.261801 CAAACGTAATGATCCCTGGTTCT 58.738 43.478 0.00 0.00 0.00 3.01
697 746 3.377172 CCAAACGTAATGATCCCTGGTTC 59.623 47.826 3.02 0.00 0.00 3.62
698 747 3.352648 CCAAACGTAATGATCCCTGGTT 58.647 45.455 3.02 0.00 0.00 3.67
699 748 2.944094 GCCAAACGTAATGATCCCTGGT 60.944 50.000 3.02 0.00 0.00 4.00
700 749 1.676006 GCCAAACGTAATGATCCCTGG 59.324 52.381 3.02 0.00 0.00 4.45
701 750 2.364632 TGCCAAACGTAATGATCCCTG 58.635 47.619 3.02 0.00 0.00 4.45
702 751 2.799126 TGCCAAACGTAATGATCCCT 57.201 45.000 3.02 0.00 0.00 4.20
703 752 2.948979 TGATGCCAAACGTAATGATCCC 59.051 45.455 3.02 0.00 0.00 3.85
704 753 3.548818 GCTGATGCCAAACGTAATGATCC 60.549 47.826 3.02 0.00 0.00 3.36
739 809 3.030291 TCATGGGTTTGCTGAAGTTTGT 58.970 40.909 0.00 0.00 0.00 2.83
757 827 8.778059 TGGGACAGGTACTCTATTTTTATTCAT 58.222 33.333 0.00 0.00 34.60 2.57
758 828 8.153221 TGGGACAGGTACTCTATTTTTATTCA 57.847 34.615 0.00 0.00 34.60 2.57
796 889 9.719355 CATTATGTTGGCTACATATACTTGGTA 57.281 33.333 19.72 5.67 46.36 3.25
805 898 7.094975 GCGGAATTACATTATGTTGGCTACATA 60.095 37.037 16.11 16.11 45.62 2.29
807 900 5.008217 GCGGAATTACATTATGTTGGCTACA 59.992 40.000 2.23 3.86 41.97 2.74
808 901 5.008217 TGCGGAATTACATTATGTTGGCTAC 59.992 40.000 2.23 0.00 0.00 3.58
809 902 5.126779 TGCGGAATTACATTATGTTGGCTA 58.873 37.500 2.23 0.00 0.00 3.93
810 903 3.951037 TGCGGAATTACATTATGTTGGCT 59.049 39.130 2.23 0.00 0.00 4.75
811 904 4.290155 CTGCGGAATTACATTATGTTGGC 58.710 43.478 2.23 0.00 0.00 4.52
866 1220 7.166473 GCTTGTCAAACACTCAATTTTCTACTG 59.834 37.037 0.00 0.00 0.00 2.74
867 1221 7.067494 AGCTTGTCAAACACTCAATTTTCTACT 59.933 33.333 0.00 0.00 0.00 2.57
868 1222 7.196331 AGCTTGTCAAACACTCAATTTTCTAC 58.804 34.615 0.00 0.00 0.00 2.59
869 1223 7.333528 AGCTTGTCAAACACTCAATTTTCTA 57.666 32.000 0.00 0.00 0.00 2.10
870 1224 6.212888 AGCTTGTCAAACACTCAATTTTCT 57.787 33.333 0.00 0.00 0.00 2.52
871 1225 7.417612 TCTAGCTTGTCAAACACTCAATTTTC 58.582 34.615 0.00 0.00 0.00 2.29
872 1226 7.333528 TCTAGCTTGTCAAACACTCAATTTT 57.666 32.000 0.00 0.00 0.00 1.82
873 1227 6.942532 TCTAGCTTGTCAAACACTCAATTT 57.057 33.333 0.00 0.00 0.00 1.82
874 1228 6.942532 TTCTAGCTTGTCAAACACTCAATT 57.057 33.333 0.00 0.00 0.00 2.32
875 1229 6.942532 TTTCTAGCTTGTCAAACACTCAAT 57.057 33.333 0.00 0.00 0.00 2.57
876 1230 6.017109 GGATTTCTAGCTTGTCAAACACTCAA 60.017 38.462 0.00 0.00 0.00 3.02
877 1231 5.470098 GGATTTCTAGCTTGTCAAACACTCA 59.530 40.000 0.00 0.00 0.00 3.41
878 1232 5.470098 TGGATTTCTAGCTTGTCAAACACTC 59.530 40.000 0.00 0.00 0.00 3.51
879 1233 5.376625 TGGATTTCTAGCTTGTCAAACACT 58.623 37.500 0.00 0.00 0.00 3.55
880 1234 5.689383 TGGATTTCTAGCTTGTCAAACAC 57.311 39.130 0.00 0.00 0.00 3.32
881 1235 5.592282 TGTTGGATTTCTAGCTTGTCAAACA 59.408 36.000 0.00 0.00 32.04 2.83
882 1236 6.072112 TGTTGGATTTCTAGCTTGTCAAAC 57.928 37.500 0.00 0.00 0.00 2.93
883 1237 6.899393 ATGTTGGATTTCTAGCTTGTCAAA 57.101 33.333 0.00 0.00 0.00 2.69
884 1238 9.851686 ATATATGTTGGATTTCTAGCTTGTCAA 57.148 29.630 0.00 0.00 0.00 3.18
885 1239 9.276590 CATATATGTTGGATTTCTAGCTTGTCA 57.723 33.333 4.43 0.00 0.00 3.58
886 1240 9.277783 ACATATATGTTGGATTTCTAGCTTGTC 57.722 33.333 12.75 0.00 37.90 3.18
1387 2072 2.266055 CTTGGCCTCCTCCACGAC 59.734 66.667 3.32 0.00 35.50 4.34
1432 2117 4.115199 GAACCGCCTGCCCTCCAT 62.115 66.667 0.00 0.00 0.00 3.41
1440 2125 2.125512 CCTCCGAAGAACCGCCTG 60.126 66.667 0.00 0.00 0.00 4.85
1653 2338 2.745884 CGGTCCTTCATTGCCGCA 60.746 61.111 0.00 0.00 37.69 5.69
1659 2344 1.073923 AGCAAGAACCGGTCCTTCATT 59.926 47.619 8.04 0.00 0.00 2.57
1699 2384 7.114247 CGGTGTACAATTTTGGTGTTATTTCTG 59.886 37.037 0.00 0.00 0.00 3.02
1723 2408 7.428183 CCGTCAATCAAATTTACTAATGTTCGG 59.572 37.037 0.00 0.00 0.00 4.30
1724 2409 7.428183 CCCGTCAATCAAATTTACTAATGTTCG 59.572 37.037 0.00 0.00 0.00 3.95
1725 2410 8.455682 TCCCGTCAATCAAATTTACTAATGTTC 58.544 33.333 0.00 0.00 0.00 3.18
1726 2411 8.343168 TCCCGTCAATCAAATTTACTAATGTT 57.657 30.769 0.00 0.00 0.00 2.71
1728 2413 9.450807 GAATCCCGTCAATCAAATTTACTAATG 57.549 33.333 0.00 0.00 0.00 1.90
1729 2414 9.408648 AGAATCCCGTCAATCAAATTTACTAAT 57.591 29.630 0.00 0.00 0.00 1.73
1730 2415 8.801882 AGAATCCCGTCAATCAAATTTACTAA 57.198 30.769 0.00 0.00 0.00 2.24
1731 2416 8.801882 AAGAATCCCGTCAATCAAATTTACTA 57.198 30.769 0.00 0.00 0.00 1.82
1732 2417 7.611855 AGAAGAATCCCGTCAATCAAATTTACT 59.388 33.333 0.00 0.00 0.00 2.24
1733 2418 7.762382 AGAAGAATCCCGTCAATCAAATTTAC 58.238 34.615 0.00 0.00 0.00 2.01
1734 2419 7.938140 AGAAGAATCCCGTCAATCAAATTTA 57.062 32.000 0.00 0.00 0.00 1.40
1735 2420 6.840780 AGAAGAATCCCGTCAATCAAATTT 57.159 33.333 0.00 0.00 0.00 1.82
1736 2421 6.840780 AAGAAGAATCCCGTCAATCAAATT 57.159 33.333 0.00 0.00 0.00 1.82
1737 2422 7.938140 TTAAGAAGAATCCCGTCAATCAAAT 57.062 32.000 0.00 0.00 0.00 2.32
1738 2423 7.938140 ATTAAGAAGAATCCCGTCAATCAAA 57.062 32.000 0.00 0.00 0.00 2.69
1739 2424 8.265055 ACTATTAAGAAGAATCCCGTCAATCAA 58.735 33.333 0.00 0.00 0.00 2.57
1740 2425 7.710907 CACTATTAAGAAGAATCCCGTCAATCA 59.289 37.037 0.00 0.00 0.00 2.57
1741 2426 7.711339 ACACTATTAAGAAGAATCCCGTCAATC 59.289 37.037 0.00 0.00 0.00 2.67
1742 2427 7.565680 ACACTATTAAGAAGAATCCCGTCAAT 58.434 34.615 0.00 0.00 0.00 2.57
1743 2428 6.942976 ACACTATTAAGAAGAATCCCGTCAA 58.057 36.000 0.00 0.00 0.00 3.18
1744 2429 6.540438 ACACTATTAAGAAGAATCCCGTCA 57.460 37.500 0.00 0.00 0.00 4.35
1745 2430 6.479331 GGAACACTATTAAGAAGAATCCCGTC 59.521 42.308 0.00 0.00 0.00 4.79
1746 2431 6.346896 GGAACACTATTAAGAAGAATCCCGT 58.653 40.000 0.00 0.00 0.00 5.28
1747 2432 5.462398 CGGAACACTATTAAGAAGAATCCCG 59.538 44.000 0.00 0.00 0.00 5.14
1748 2433 5.236695 GCGGAACACTATTAAGAAGAATCCC 59.763 44.000 0.00 0.00 0.00 3.85
1749 2434 5.236695 GGCGGAACACTATTAAGAAGAATCC 59.763 44.000 0.00 0.00 0.00 3.01
1750 2435 5.236695 GGGCGGAACACTATTAAGAAGAATC 59.763 44.000 0.00 0.00 0.00 2.52
1751 2436 5.104485 AGGGCGGAACACTATTAAGAAGAAT 60.104 40.000 0.00 0.00 0.00 2.40
1752 2437 4.224370 AGGGCGGAACACTATTAAGAAGAA 59.776 41.667 0.00 0.00 0.00 2.52
1753 2438 3.773119 AGGGCGGAACACTATTAAGAAGA 59.227 43.478 0.00 0.00 0.00 2.87
1754 2439 3.871594 CAGGGCGGAACACTATTAAGAAG 59.128 47.826 0.00 0.00 0.00 2.85
1755 2440 3.869065 CAGGGCGGAACACTATTAAGAA 58.131 45.455 0.00 0.00 0.00 2.52
1756 2441 2.419574 GCAGGGCGGAACACTATTAAGA 60.420 50.000 0.00 0.00 0.00 2.10
1757 2442 1.940613 GCAGGGCGGAACACTATTAAG 59.059 52.381 0.00 0.00 0.00 1.85
1758 2443 1.279558 TGCAGGGCGGAACACTATTAA 59.720 47.619 0.00 0.00 0.00 1.40
1759 2444 0.906066 TGCAGGGCGGAACACTATTA 59.094 50.000 0.00 0.00 0.00 0.98
1760 2445 0.676782 GTGCAGGGCGGAACACTATT 60.677 55.000 0.00 0.00 0.00 1.73
1761 2446 1.078426 GTGCAGGGCGGAACACTAT 60.078 57.895 0.00 0.00 0.00 2.12
1762 2447 2.345991 GTGCAGGGCGGAACACTA 59.654 61.111 0.00 0.00 0.00 2.74
1763 2448 4.643387 GGTGCAGGGCGGAACACT 62.643 66.667 0.00 0.00 33.53 3.55
1764 2449 2.813226 TATGGTGCAGGGCGGAACAC 62.813 60.000 0.00 0.00 34.31 3.32
1765 2450 1.920734 ATATGGTGCAGGGCGGAACA 61.921 55.000 0.00 0.00 36.91 3.18
1766 2451 0.107831 TATATGGTGCAGGGCGGAAC 59.892 55.000 0.00 0.00 0.00 3.62
1767 2452 0.840617 TTATATGGTGCAGGGCGGAA 59.159 50.000 0.00 0.00 0.00 4.30
1768 2453 1.064003 ATTATATGGTGCAGGGCGGA 58.936 50.000 0.00 0.00 0.00 5.54
1769 2454 2.747446 GTTATTATATGGTGCAGGGCGG 59.253 50.000 0.00 0.00 0.00 6.13
1770 2455 2.747446 GGTTATTATATGGTGCAGGGCG 59.253 50.000 0.00 0.00 0.00 6.13
1771 2456 4.034285 AGGTTATTATATGGTGCAGGGC 57.966 45.455 0.00 0.00 0.00 5.19
1772 2457 9.747898 TTAATAAGGTTATTATATGGTGCAGGG 57.252 33.333 3.57 0.00 36.00 4.45
1811 2496 8.831550 GCACAATTTATTTTTGTAAAACCTCCA 58.168 29.630 0.00 0.00 35.61 3.86
1812 2497 8.286800 GGCACAATTTATTTTTGTAAAACCTCC 58.713 33.333 0.00 0.00 35.61 4.30
1813 2498 8.831550 TGGCACAATTTATTTTTGTAAAACCTC 58.168 29.630 0.00 0.00 35.61 3.85
1814 2499 8.738645 TGGCACAATTTATTTTTGTAAAACCT 57.261 26.923 0.00 0.00 35.61 3.50
1833 2518 0.174389 ACGCAACAATGTTTGGCACA 59.826 45.000 8.75 0.00 40.71 4.57
1834 2519 0.576328 CACGCAACAATGTTTGGCAC 59.424 50.000 8.75 0.00 34.12 5.01
1835 2520 0.174389 ACACGCAACAATGTTTGGCA 59.826 45.000 8.75 0.00 34.12 4.92
1836 2521 0.576328 CACACGCAACAATGTTTGGC 59.424 50.000 0.00 0.00 34.12 4.52
1837 2522 1.919918 ACACACGCAACAATGTTTGG 58.080 45.000 0.00 0.00 34.12 3.28
1838 2523 3.481749 CACTACACACGCAACAATGTTTG 59.518 43.478 0.00 0.00 0.00 2.93
1839 2524 3.127895 ACACTACACACGCAACAATGTTT 59.872 39.130 0.00 0.00 0.00 2.83
1840 2525 2.680841 ACACTACACACGCAACAATGTT 59.319 40.909 0.00 0.00 0.00 2.71
1841 2526 2.031560 CACACTACACACGCAACAATGT 59.968 45.455 0.00 0.00 0.00 2.71
1842 2527 2.286563 TCACACTACACACGCAACAATG 59.713 45.455 0.00 0.00 0.00 2.82
1843 2528 2.543848 CTCACACTACACACGCAACAAT 59.456 45.455 0.00 0.00 0.00 2.71
1844 2529 1.930503 CTCACACTACACACGCAACAA 59.069 47.619 0.00 0.00 0.00 2.83
1845 2530 1.134936 ACTCACACTACACACGCAACA 60.135 47.619 0.00 0.00 0.00 3.33
1846 2531 1.567504 ACTCACACTACACACGCAAC 58.432 50.000 0.00 0.00 0.00 4.17
1847 2532 2.159156 AGAACTCACACTACACACGCAA 60.159 45.455 0.00 0.00 0.00 4.85
1848 2533 1.407618 AGAACTCACACTACACACGCA 59.592 47.619 0.00 0.00 0.00 5.24
1849 2534 1.787155 CAGAACTCACACTACACACGC 59.213 52.381 0.00 0.00 0.00 5.34
1850 2535 3.043586 GTCAGAACTCACACTACACACG 58.956 50.000 0.00 0.00 0.00 4.49
1851 2536 3.381949 GGTCAGAACTCACACTACACAC 58.618 50.000 0.00 0.00 0.00 3.82
1852 2537 2.364324 GGGTCAGAACTCACACTACACA 59.636 50.000 0.00 0.00 0.00 3.72
1853 2538 2.364324 TGGGTCAGAACTCACACTACAC 59.636 50.000 0.00 0.00 28.22 2.90
1854 2539 2.673258 TGGGTCAGAACTCACACTACA 58.327 47.619 0.00 0.00 28.22 2.74
1855 2540 3.746045 TTGGGTCAGAACTCACACTAC 57.254 47.619 0.00 0.00 34.93 2.73
1856 2541 3.491964 CGTTTGGGTCAGAACTCACACTA 60.492 47.826 0.00 0.00 34.93 2.74
1857 2542 2.741878 CGTTTGGGTCAGAACTCACACT 60.742 50.000 0.00 0.00 34.93 3.55
1858 2543 1.597663 CGTTTGGGTCAGAACTCACAC 59.402 52.381 0.00 0.00 34.93 3.82
1859 2544 1.948104 CGTTTGGGTCAGAACTCACA 58.052 50.000 0.00 0.00 34.93 3.58
1860 2545 0.586802 GCGTTTGGGTCAGAACTCAC 59.413 55.000 0.00 0.00 34.93 3.51
1861 2546 0.468226 AGCGTTTGGGTCAGAACTCA 59.532 50.000 0.00 0.00 32.69 3.41
1862 2547 1.594331 AAGCGTTTGGGTCAGAACTC 58.406 50.000 0.00 0.00 0.00 3.01
1863 2548 1.676006 CAAAGCGTTTGGGTCAGAACT 59.324 47.619 0.00 0.00 37.01 3.01
1864 2549 1.864029 GCAAAGCGTTTGGGTCAGAAC 60.864 52.381 10.89 0.00 40.94 3.01
1865 2550 0.383949 GCAAAGCGTTTGGGTCAGAA 59.616 50.000 10.89 0.00 40.94 3.02
1866 2551 0.749818 TGCAAAGCGTTTGGGTCAGA 60.750 50.000 10.89 0.00 40.94 3.27
1867 2552 0.594796 GTGCAAAGCGTTTGGGTCAG 60.595 55.000 10.89 0.00 40.94 3.51
1868 2553 1.435515 GTGCAAAGCGTTTGGGTCA 59.564 52.632 10.89 1.12 40.94 4.02
1869 2554 1.657181 CGTGCAAAGCGTTTGGGTC 60.657 57.895 10.89 0.00 40.94 4.46
1870 2555 1.096386 TACGTGCAAAGCGTTTGGGT 61.096 50.000 6.14 0.00 42.85 4.51
1871 2556 0.029567 TTACGTGCAAAGCGTTTGGG 59.970 50.000 6.14 0.00 42.85 4.12
1872 2557 1.828832 TTTACGTGCAAAGCGTTTGG 58.171 45.000 6.14 0.00 42.85 3.28
1873 2558 5.547716 TTTATTTACGTGCAAAGCGTTTG 57.452 34.783 6.14 6.22 42.85 2.93
1874 2559 6.757026 AATTTATTTACGTGCAAAGCGTTT 57.243 29.167 6.14 0.00 42.85 3.60
1875 2560 7.079475 ACTAATTTATTTACGTGCAAAGCGTT 58.921 30.769 6.14 0.00 42.85 4.84
1876 2561 6.604930 ACTAATTTATTTACGTGCAAAGCGT 58.395 32.000 6.11 6.11 45.11 5.07
1877 2562 8.762149 ATACTAATTTATTTACGTGCAAAGCG 57.238 30.769 0.00 0.00 0.00 4.68
1904 2589 9.528018 GACTTTGATTGACCTTTATTGAAAACA 57.472 29.630 0.00 0.00 0.00 2.83
1905 2590 9.750125 AGACTTTGATTGACCTTTATTGAAAAC 57.250 29.630 0.00 0.00 0.00 2.43
1906 2591 9.965824 GAGACTTTGATTGACCTTTATTGAAAA 57.034 29.630 0.00 0.00 0.00 2.29
1907 2592 9.354673 AGAGACTTTGATTGACCTTTATTGAAA 57.645 29.630 0.00 0.00 0.00 2.69
1908 2593 8.924511 AGAGACTTTGATTGACCTTTATTGAA 57.075 30.769 0.00 0.00 0.00 2.69
1909 2594 8.156820 TGAGAGACTTTGATTGACCTTTATTGA 58.843 33.333 0.00 0.00 0.00 2.57
1910 2595 8.233190 GTGAGAGACTTTGATTGACCTTTATTG 58.767 37.037 0.00 0.00 0.00 1.90
1911 2596 7.939039 TGTGAGAGACTTTGATTGACCTTTATT 59.061 33.333 0.00 0.00 0.00 1.40
1912 2597 7.453393 TGTGAGAGACTTTGATTGACCTTTAT 58.547 34.615 0.00 0.00 0.00 1.40
1913 2598 6.826668 TGTGAGAGACTTTGATTGACCTTTA 58.173 36.000 0.00 0.00 0.00 1.85
1914 2599 5.684704 TGTGAGAGACTTTGATTGACCTTT 58.315 37.500 0.00 0.00 0.00 3.11
1915 2600 5.296151 TGTGAGAGACTTTGATTGACCTT 57.704 39.130 0.00 0.00 0.00 3.50
1916 2601 4.963318 TGTGAGAGACTTTGATTGACCT 57.037 40.909 0.00 0.00 0.00 3.85
1917 2602 4.084328 CGTTGTGAGAGACTTTGATTGACC 60.084 45.833 0.00 0.00 0.00 4.02
1918 2603 4.508124 ACGTTGTGAGAGACTTTGATTGAC 59.492 41.667 0.00 0.00 0.00 3.18
1919 2604 4.693283 ACGTTGTGAGAGACTTTGATTGA 58.307 39.130 0.00 0.00 0.00 2.57
1920 2605 6.525121 TTACGTTGTGAGAGACTTTGATTG 57.475 37.500 0.00 0.00 0.00 2.67
1921 2606 7.548196 TTTTACGTTGTGAGAGACTTTGATT 57.452 32.000 0.00 0.00 0.00 2.57
1922 2607 7.548196 TTTTTACGTTGTGAGAGACTTTGAT 57.452 32.000 0.00 0.00 0.00 2.57
1923 2608 6.971527 TTTTTACGTTGTGAGAGACTTTGA 57.028 33.333 0.00 0.00 0.00 2.69
1943 2628 8.723942 TTGCAACGGCCAAATATATAATTTTT 57.276 26.923 2.24 0.00 40.13 1.94
1944 2629 8.900983 ATTGCAACGGCCAAATATATAATTTT 57.099 26.923 0.00 0.00 40.13 1.82
1945 2630 9.988815 TTATTGCAACGGCCAAATATATAATTT 57.011 25.926 0.00 0.00 40.13 1.82
1946 2631 9.418045 GTTATTGCAACGGCCAAATATATAATT 57.582 29.630 0.00 0.00 40.13 1.40
1947 2632 8.802267 AGTTATTGCAACGGCCAAATATATAAT 58.198 29.630 0.00 0.00 40.13 1.28
1948 2633 8.172352 AGTTATTGCAACGGCCAAATATATAA 57.828 30.769 0.00 0.00 40.13 0.98
1949 2634 7.753309 AGTTATTGCAACGGCCAAATATATA 57.247 32.000 0.00 0.00 40.13 0.86
1950 2635 6.648879 AGTTATTGCAACGGCCAAATATAT 57.351 33.333 0.00 0.00 40.13 0.86
1951 2636 6.458232 AAGTTATTGCAACGGCCAAATATA 57.542 33.333 0.00 0.00 40.13 0.86
1952 2637 5.337578 AAGTTATTGCAACGGCCAAATAT 57.662 34.783 0.00 0.00 40.13 1.28
1953 2638 4.792521 AAGTTATTGCAACGGCCAAATA 57.207 36.364 0.00 0.00 40.13 1.40
1954 2639 3.676291 AAGTTATTGCAACGGCCAAAT 57.324 38.095 0.00 0.00 40.13 2.32
1955 2640 3.126831 CAAAGTTATTGCAACGGCCAAA 58.873 40.909 0.00 0.00 40.13 3.28
1956 2641 2.362397 TCAAAGTTATTGCAACGGCCAA 59.638 40.909 0.00 0.00 40.13 4.52
1957 2642 1.957177 TCAAAGTTATTGCAACGGCCA 59.043 42.857 0.00 0.00 40.13 5.36
1958 2643 2.324860 GTCAAAGTTATTGCAACGGCC 58.675 47.619 0.00 0.00 40.13 6.13
1959 2644 2.287909 TGGTCAAAGTTATTGCAACGGC 60.288 45.455 0.00 0.00 41.68 5.68
1960 2645 3.634568 TGGTCAAAGTTATTGCAACGG 57.365 42.857 0.00 0.00 0.00 4.44
1961 2646 3.420576 CGTTGGTCAAAGTTATTGCAACG 59.579 43.478 0.00 14.71 38.48 4.10
1962 2647 3.733727 CCGTTGGTCAAAGTTATTGCAAC 59.266 43.478 0.00 0.00 0.00 4.17
1963 2648 3.381908 ACCGTTGGTCAAAGTTATTGCAA 59.618 39.130 0.00 0.00 0.00 4.08
1964 2649 2.952978 ACCGTTGGTCAAAGTTATTGCA 59.047 40.909 0.00 0.00 0.00 4.08
1965 2650 3.636282 ACCGTTGGTCAAAGTTATTGC 57.364 42.857 0.00 0.00 0.00 3.56
1966 2651 4.979815 GGAAACCGTTGGTCAAAGTTATTG 59.020 41.667 0.00 0.00 33.12 1.90
1967 2652 4.645588 TGGAAACCGTTGGTCAAAGTTATT 59.354 37.500 0.00 0.00 33.12 1.40
1968 2653 4.208746 TGGAAACCGTTGGTCAAAGTTAT 58.791 39.130 0.00 0.00 33.12 1.89
1969 2654 3.618351 TGGAAACCGTTGGTCAAAGTTA 58.382 40.909 0.00 0.00 33.12 2.24
1970 2655 2.448453 TGGAAACCGTTGGTCAAAGTT 58.552 42.857 0.00 0.00 33.12 2.66
1971 2656 2.131776 TGGAAACCGTTGGTCAAAGT 57.868 45.000 0.00 0.00 33.12 2.66
1972 2657 4.839668 TTATGGAAACCGTTGGTCAAAG 57.160 40.909 0.00 0.00 33.12 2.77
1973 2658 5.793030 AATTATGGAAACCGTTGGTCAAA 57.207 34.783 0.00 0.00 33.12 2.69
1974 2659 5.793030 AAATTATGGAAACCGTTGGTCAA 57.207 34.783 0.00 0.00 33.12 3.18
1975 2660 5.793030 AAAATTATGGAAACCGTTGGTCA 57.207 34.783 0.00 0.00 33.12 4.02
1996 2681 7.450124 TGTTATAGTAATCGTTGGCCAAAAA 57.550 32.000 22.47 11.94 0.00 1.94
1997 2682 7.450124 TTGTTATAGTAATCGTTGGCCAAAA 57.550 32.000 22.47 12.35 0.00 2.44
1998 2683 7.633193 ATTGTTATAGTAATCGTTGGCCAAA 57.367 32.000 22.47 5.91 0.00 3.28
1999 2684 7.633193 AATTGTTATAGTAATCGTTGGCCAA 57.367 32.000 16.05 16.05 0.00 4.52
2000 2685 7.633193 AAATTGTTATAGTAATCGTTGGCCA 57.367 32.000 0.00 0.00 0.00 5.36
2001 2686 9.442033 GTAAAATTGTTATAGTAATCGTTGGCC 57.558 33.333 0.00 0.00 0.00 5.36
2016 2701 8.567104 GGAACGTTTCCCTTAGTAAAATTGTTA 58.433 33.333 0.46 0.00 44.30 2.41
2017 2702 7.428020 GGAACGTTTCCCTTAGTAAAATTGTT 58.572 34.615 0.46 0.00 44.30 2.83
2018 2703 6.973843 GGAACGTTTCCCTTAGTAAAATTGT 58.026 36.000 0.46 0.00 44.30 2.71
2041 2726 1.438651 CGGTCCGCCATACATATTGG 58.561 55.000 0.00 0.00 37.31 3.16
2047 2732 1.828461 TTCAACCGGTCCGCCATACA 61.828 55.000 8.04 0.00 34.09 2.29
2048 2733 0.674269 TTTCAACCGGTCCGCCATAC 60.674 55.000 8.04 0.00 34.09 2.39
2049 2734 0.036448 TTTTCAACCGGTCCGCCATA 59.964 50.000 8.04 0.00 34.09 2.74
2050 2735 0.824182 TTTTTCAACCGGTCCGCCAT 60.824 50.000 8.04 0.00 34.09 4.40
2051 2736 0.824182 ATTTTTCAACCGGTCCGCCA 60.824 50.000 8.04 0.00 34.09 5.69
2054 2739 2.067766 TCGTATTTTTCAACCGGTCCG 58.932 47.619 8.04 3.60 0.00 4.79
2062 2747 4.516359 CGTTTGACCGTCGTATTTTTCAA 58.484 39.130 0.00 0.00 0.00 2.69
2063 2748 3.604314 GCGTTTGACCGTCGTATTTTTCA 60.604 43.478 0.00 0.00 0.00 2.69
2069 2754 0.795735 CTCGCGTTTGACCGTCGTAT 60.796 55.000 5.77 0.00 0.00 3.06
2074 2759 4.595538 TGGCTCGCGTTTGACCGT 62.596 61.111 5.77 0.00 0.00 4.83
2124 2817 4.352595 TGGTTGGGGAAAAGATAAGAGTCA 59.647 41.667 0.00 0.00 0.00 3.41
2136 2829 1.456705 GTGGCAGTGGTTGGGGAAA 60.457 57.895 0.00 0.00 0.00 3.13
2154 2847 1.125021 GAAGACAACATGACGAGTGCG 59.875 52.381 0.00 0.00 44.79 5.34
2155 2848 1.461127 GGAAGACAACATGACGAGTGC 59.539 52.381 0.00 0.00 0.00 4.40
2194 2887 2.520741 GGGGCGGGAGAGAGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
2195 2888 2.705487 ATGGGGCGGGAGAGAGAGA 61.705 63.158 0.00 0.00 0.00 3.10
2196 2889 2.123077 ATGGGGCGGGAGAGAGAG 60.123 66.667 0.00 0.00 0.00 3.20
2271 2980 0.532862 CGTCTCCTATTTGCCGGCAT 60.533 55.000 33.25 19.97 0.00 4.40
2348 3058 3.052082 CTGTCACAAGCCCCTGCG 61.052 66.667 0.00 0.00 44.33 5.18
2501 3211 2.203153 GGTGTGCACGGTTCCAGT 60.203 61.111 13.13 0.00 0.00 4.00
2541 3251 4.500127 TGATTGTAACATTCACCGACGAT 58.500 39.130 0.00 0.00 0.00 3.73
2639 3350 1.227556 GGTGGTAGCATTCGCCGAT 60.228 57.895 0.00 0.00 39.83 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.