Multiple sequence alignment - TraesCS3B01G498400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G498400 chr3B 100.000 3140 0 0 1 3140 741968993 741965854 0.000000e+00 5799.0
1 TraesCS3B01G498400 chr3B 89.527 1566 110 14 733 2270 742110554 742109015 0.000000e+00 1934.0
2 TraesCS3B01G498400 chr3B 80.491 1630 235 40 695 2290 738592012 738590432 0.000000e+00 1171.0
3 TraesCS3B01G498400 chr3B 81.146 1326 177 37 889 2185 738625863 738624582 0.000000e+00 996.0
4 TraesCS3B01G498400 chr3B 92.683 656 44 4 1 652 141620893 141621548 0.000000e+00 942.0
5 TraesCS3B01G498400 chr3B 94.454 613 29 5 45 652 204809963 204810575 0.000000e+00 939.0
6 TraesCS3B01G498400 chr3B 79.047 1427 227 34 812 2201 738289885 738288494 0.000000e+00 913.0
7 TraesCS3B01G498400 chr3B 78.183 1453 238 40 889 2301 738156522 738155109 0.000000e+00 854.0
8 TraesCS3B01G498400 chr3B 85.791 746 62 13 733 1450 742081367 742080638 0.000000e+00 750.0
9 TraesCS3B01G498400 chr3B 85.542 747 62 17 733 1450 742061567 742060838 0.000000e+00 739.0
10 TraesCS3B01G498400 chr3B 83.797 790 66 27 2267 3046 742108935 742108198 0.000000e+00 693.0
11 TraesCS3B01G498400 chr3B 79.235 183 16 10 2419 2581 738155048 738154868 1.190000e-19 108.0
12 TraesCS3B01G498400 chr3B 78.947 152 29 1 1762 1913 738105640 738105492 1.990000e-17 100.0
13 TraesCS3B01G498400 chr3B 86.957 69 9 0 2619 2687 738154873 738154805 9.340000e-11 78.7
14 TraesCS3B01G498400 chr3B 100.000 31 0 0 2657 2687 738590120 738590090 1.220000e-04 58.4
15 TraesCS3B01G498400 chr3B 100.000 28 0 0 2419 2446 738288282 738288255 6.000000e-03 52.8
16 TraesCS3B01G498400 chr3A 87.596 2346 175 37 735 3046 695515051 695517314 0.000000e+00 2614.0
17 TraesCS3B01G498400 chr3A 80.528 1325 182 38 889 2185 692495390 692494114 0.000000e+00 948.0
18 TraesCS3B01G498400 chr3A 79.173 1426 233 30 812 2201 692058048 692056651 0.000000e+00 929.0
19 TraesCS3B01G498400 chr3A 79.044 1422 239 33 809 2201 692316353 692314962 0.000000e+00 920.0
20 TraesCS3B01G498400 chr3A 80.892 785 126 14 1100 1881 692489789 692489026 5.800000e-167 597.0
21 TraesCS3B01G498400 chr3A 81.420 662 102 14 1567 2219 691982253 691981604 3.590000e-144 521.0
22 TraesCS3B01G498400 chr3A 79.612 618 61 24 742 1328 691992566 691991983 1.770000e-102 383.0
23 TraesCS3B01G498400 chr3A 83.008 359 37 9 755 1110 692491409 692491072 1.420000e-78 303.0
24 TraesCS3B01G498400 chr3A 72.326 1066 236 42 1105 2136 691732795 691731755 2.380000e-71 279.0
25 TraesCS3B01G498400 chr3A 76.190 126 19 8 2419 2534 692056439 692056315 4.370000e-04 56.5
26 TraesCS3B01G498400 chr3A 84.483 58 8 1 2419 2475 692470351 692470294 4.370000e-04 56.5
27 TraesCS3B01G498400 chr3D 90.222 1667 127 8 737 2375 559120033 559121691 0.000000e+00 2143.0
28 TraesCS3B01G498400 chr3D 81.901 1652 212 40 692 2301 555314718 555313112 0.000000e+00 1314.0
29 TraesCS3B01G498400 chr3D 84.177 474 43 16 2366 2831 559121766 559122215 6.220000e-117 431.0
30 TraesCS3B01G498400 chr3D 92.424 132 10 0 2915 3046 559122230 559122361 4.130000e-44 189.0
31 TraesCS3B01G498400 chr3D 94.828 58 2 1 1450 1506 554817329 554817386 4.310000e-14 89.8
32 TraesCS3B01G498400 chr3D 84.483 58 8 1 2419 2475 555304595 555304538 4.370000e-04 56.5
33 TraesCS3B01G498400 chr7D 93.588 655 37 5 1 652 599535061 599534409 0.000000e+00 972.0
34 TraesCS3B01G498400 chr7A 92.835 656 41 6 2 652 279936074 279936728 0.000000e+00 946.0
35 TraesCS3B01G498400 chr5D 92.530 656 44 5 1 652 32612364 32613018 0.000000e+00 935.0
36 TraesCS3B01G498400 chr1A 92.073 656 46 6 1 652 572218140 572218793 0.000000e+00 918.0
37 TraesCS3B01G498400 chrUn 92.073 656 45 6 1 652 74557294 74556642 0.000000e+00 917.0
38 TraesCS3B01G498400 chrUn 72.139 1066 238 42 1105 2136 272482851 272481811 5.160000e-68 268.0
39 TraesCS3B01G498400 chrUn 72.139 1066 238 42 1105 2136 279590250 279591290 5.160000e-68 268.0
40 TraesCS3B01G498400 chr7B 91.743 654 47 5 1 651 388889541 388890190 0.000000e+00 902.0
41 TraesCS3B01G498400 chr4D 91.743 654 45 7 1 651 364573057 364573704 0.000000e+00 900.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G498400 chr3B 741965854 741968993 3139 True 5799.00 5799 100.000000 1 3140 1 chr3B.!!$R3 3139
1 TraesCS3B01G498400 chr3B 742108198 742110554 2356 True 1313.50 1934 86.662000 733 3046 2 chr3B.!!$R9 2313
2 TraesCS3B01G498400 chr3B 738624582 738625863 1281 True 996.00 996 81.146000 889 2185 1 chr3B.!!$R2 1296
3 TraesCS3B01G498400 chr3B 141620893 141621548 655 False 942.00 942 92.683000 1 652 1 chr3B.!!$F1 651
4 TraesCS3B01G498400 chr3B 204809963 204810575 612 False 939.00 939 94.454000 45 652 1 chr3B.!!$F2 607
5 TraesCS3B01G498400 chr3B 742080638 742081367 729 True 750.00 750 85.791000 733 1450 1 chr3B.!!$R5 717
6 TraesCS3B01G498400 chr3B 742060838 742061567 729 True 739.00 739 85.542000 733 1450 1 chr3B.!!$R4 717
7 TraesCS3B01G498400 chr3B 738590090 738592012 1922 True 614.70 1171 90.245500 695 2687 2 chr3B.!!$R8 1992
8 TraesCS3B01G498400 chr3B 738288255 738289885 1630 True 482.90 913 89.523500 812 2446 2 chr3B.!!$R7 1634
9 TraesCS3B01G498400 chr3B 738154805 738156522 1717 True 346.90 854 81.458333 889 2687 3 chr3B.!!$R6 1798
10 TraesCS3B01G498400 chr3A 695515051 695517314 2263 False 2614.00 2614 87.596000 735 3046 1 chr3A.!!$F1 2311
11 TraesCS3B01G498400 chr3A 692314962 692316353 1391 True 920.00 920 79.044000 809 2201 1 chr3A.!!$R4 1392
12 TraesCS3B01G498400 chr3A 692489026 692495390 6364 True 616.00 948 81.476000 755 2185 3 chr3A.!!$R7 1430
13 TraesCS3B01G498400 chr3A 691981604 691982253 649 True 521.00 521 81.420000 1567 2219 1 chr3A.!!$R2 652
14 TraesCS3B01G498400 chr3A 692056315 692058048 1733 True 492.75 929 77.681500 812 2534 2 chr3A.!!$R6 1722
15 TraesCS3B01G498400 chr3A 691991983 691992566 583 True 383.00 383 79.612000 742 1328 1 chr3A.!!$R3 586
16 TraesCS3B01G498400 chr3A 691731755 691732795 1040 True 279.00 279 72.326000 1105 2136 1 chr3A.!!$R1 1031
17 TraesCS3B01G498400 chr3D 555313112 555314718 1606 True 1314.00 1314 81.901000 692 2301 1 chr3D.!!$R2 1609
18 TraesCS3B01G498400 chr3D 559120033 559122361 2328 False 921.00 2143 88.941000 737 3046 3 chr3D.!!$F2 2309
19 TraesCS3B01G498400 chr7D 599534409 599535061 652 True 972.00 972 93.588000 1 652 1 chr7D.!!$R1 651
20 TraesCS3B01G498400 chr7A 279936074 279936728 654 False 946.00 946 92.835000 2 652 1 chr7A.!!$F1 650
21 TraesCS3B01G498400 chr5D 32612364 32613018 654 False 935.00 935 92.530000 1 652 1 chr5D.!!$F1 651
22 TraesCS3B01G498400 chr1A 572218140 572218793 653 False 918.00 918 92.073000 1 652 1 chr1A.!!$F1 651
23 TraesCS3B01G498400 chrUn 74556642 74557294 652 True 917.00 917 92.073000 1 652 1 chrUn.!!$R1 651
24 TraesCS3B01G498400 chrUn 272481811 272482851 1040 True 268.00 268 72.139000 1105 2136 1 chrUn.!!$R2 1031
25 TraesCS3B01G498400 chrUn 279590250 279591290 1040 False 268.00 268 72.139000 1105 2136 1 chrUn.!!$F1 1031
26 TraesCS3B01G498400 chr7B 388889541 388890190 649 False 902.00 902 91.743000 1 651 1 chr7B.!!$F1 650
27 TraesCS3B01G498400 chr4D 364573057 364573704 647 False 900.00 900 91.743000 1 651 1 chr4D.!!$F1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 439 0.031414 AGTCTACTACCCCGGCCAAT 60.031 55.0 2.24 0.0 0.0 3.16 F
663 672 0.249868 TCCGCCAGTGAGAGTGTTTG 60.250 55.0 0.00 0.0 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 1421 0.674895 ACGGTGATCCAGCTTCTTGC 60.675 55.0 0.0 0.0 43.29 4.01 R
2351 2561 0.819259 TCACTCAAGCACCAACAGGC 60.819 55.0 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.011968 CATGCATGCAGTGTTGTGGC 61.012 55.000 26.69 0.00 0.00 5.01
41 42 9.699703 GTTGTGGCCTAAAATTTTGTCTTTATA 57.300 29.630 13.76 0.00 0.00 0.98
103 105 2.424956 GAGATTCCTTGTTGATGGGTGC 59.575 50.000 0.00 0.00 0.00 5.01
131 134 4.450757 GTGCGCTTATTTTGGGTTTTCAAT 59.549 37.500 9.73 0.00 0.00 2.57
181 184 3.129287 GTGCATCCAAATTCAGATCCGTT 59.871 43.478 0.00 0.00 0.00 4.44
204 207 4.514577 CGCTGGATTCCTCGCGGT 62.515 66.667 23.38 0.00 39.21 5.68
208 211 1.079405 TGGATTCCTCGCGGTGAAC 60.079 57.895 6.13 4.72 0.00 3.18
246 250 5.192927 TCCCCATGAGTATGTTTTGATGAC 58.807 41.667 0.00 0.00 32.21 3.06
268 273 4.202101 ACAAAACATCGATGCCAACTTTGA 60.202 37.500 25.11 0.00 0.00 2.69
270 275 5.895636 AAACATCGATGCCAACTTTGATA 57.104 34.783 25.11 0.00 0.00 2.15
320 325 8.397906 GCATTATGCAACTTTAGTACTGAATGA 58.602 33.333 12.80 0.00 44.26 2.57
325 330 6.128200 TGCAACTTTAGTACTGAATGATGCAG 60.128 38.462 20.83 0.00 35.93 4.41
433 439 0.031414 AGTCTACTACCCCGGCCAAT 60.031 55.000 2.24 0.00 0.00 3.16
437 443 1.764134 CTACTACCCCGGCCAATAACA 59.236 52.381 2.24 0.00 0.00 2.41
439 445 1.133915 ACTACCCCGGCCAATAACATG 60.134 52.381 2.24 0.00 0.00 3.21
652 661 2.186826 GTTGCACAAGTCCGCCAGT 61.187 57.895 0.00 0.00 0.00 4.00
653 662 2.186160 TTGCACAAGTCCGCCAGTG 61.186 57.895 0.00 0.00 35.19 3.66
654 663 2.280797 GCACAAGTCCGCCAGTGA 60.281 61.111 0.00 0.00 33.99 3.41
655 664 2.320587 GCACAAGTCCGCCAGTGAG 61.321 63.158 0.00 0.00 33.99 3.51
656 665 1.367471 CACAAGTCCGCCAGTGAGA 59.633 57.895 0.00 0.00 33.99 3.27
657 666 0.668706 CACAAGTCCGCCAGTGAGAG 60.669 60.000 0.00 0.00 33.99 3.20
658 667 1.115930 ACAAGTCCGCCAGTGAGAGT 61.116 55.000 0.00 0.00 0.00 3.24
659 668 0.668706 CAAGTCCGCCAGTGAGAGTG 60.669 60.000 0.00 0.00 0.00 3.51
660 669 1.115930 AAGTCCGCCAGTGAGAGTGT 61.116 55.000 0.00 0.00 0.00 3.55
661 670 1.115930 AGTCCGCCAGTGAGAGTGTT 61.116 55.000 0.00 0.00 0.00 3.32
662 671 0.249911 GTCCGCCAGTGAGAGTGTTT 60.250 55.000 0.00 0.00 0.00 2.83
663 672 0.249868 TCCGCCAGTGAGAGTGTTTG 60.250 55.000 0.00 0.00 0.00 2.93
664 673 1.230635 CCGCCAGTGAGAGTGTTTGG 61.231 60.000 0.00 0.00 0.00 3.28
665 674 0.249868 CGCCAGTGAGAGTGTTTGGA 60.250 55.000 0.00 0.00 0.00 3.53
666 675 1.230324 GCCAGTGAGAGTGTTTGGAC 58.770 55.000 0.00 0.00 0.00 4.02
667 676 1.202698 GCCAGTGAGAGTGTTTGGACT 60.203 52.381 0.00 0.00 0.00 3.85
668 677 2.746472 GCCAGTGAGAGTGTTTGGACTT 60.746 50.000 0.00 0.00 0.00 3.01
669 678 3.494398 GCCAGTGAGAGTGTTTGGACTTA 60.494 47.826 0.00 0.00 0.00 2.24
670 679 4.058817 CCAGTGAGAGTGTTTGGACTTAC 58.941 47.826 0.00 0.00 0.00 2.34
671 680 4.442893 CCAGTGAGAGTGTTTGGACTTACA 60.443 45.833 0.00 0.00 0.00 2.41
672 681 4.508124 CAGTGAGAGTGTTTGGACTTACAC 59.492 45.833 0.00 0.00 43.81 2.90
673 682 4.161565 AGTGAGAGTGTTTGGACTTACACA 59.838 41.667 7.94 0.00 45.43 3.72
674 683 4.270325 GTGAGAGTGTTTGGACTTACACAC 59.730 45.833 7.94 2.04 45.43 3.82
675 684 4.081365 TGAGAGTGTTTGGACTTACACACA 60.081 41.667 7.94 3.06 45.43 3.72
676 685 4.442706 AGAGTGTTTGGACTTACACACAG 58.557 43.478 7.94 0.00 45.43 3.66
677 686 2.943033 AGTGTTTGGACTTACACACAGC 59.057 45.455 7.94 0.00 45.43 4.40
678 687 2.032924 GTGTTTGGACTTACACACAGCC 59.967 50.000 0.00 0.00 43.15 4.85
679 688 1.607148 GTTTGGACTTACACACAGCCC 59.393 52.381 0.00 0.00 0.00 5.19
680 689 0.840617 TTGGACTTACACACAGCCCA 59.159 50.000 0.00 0.00 0.00 5.36
681 690 0.396435 TGGACTTACACACAGCCCAG 59.604 55.000 0.00 0.00 0.00 4.45
682 691 0.396811 GGACTTACACACAGCCCAGT 59.603 55.000 0.00 0.00 0.00 4.00
683 692 1.621814 GGACTTACACACAGCCCAGTA 59.378 52.381 0.00 0.00 0.00 2.74
684 693 2.038033 GGACTTACACACAGCCCAGTAA 59.962 50.000 0.00 0.00 0.00 2.24
685 694 3.495453 GGACTTACACACAGCCCAGTAAA 60.495 47.826 0.00 0.00 0.00 2.01
686 695 4.131596 GACTTACACACAGCCCAGTAAAA 58.868 43.478 0.00 0.00 0.00 1.52
687 696 4.528920 ACTTACACACAGCCCAGTAAAAA 58.471 39.130 0.00 0.00 0.00 1.94
688 697 4.578928 ACTTACACACAGCCCAGTAAAAAG 59.421 41.667 0.00 0.00 0.00 2.27
689 698 1.681264 ACACACAGCCCAGTAAAAAGC 59.319 47.619 0.00 0.00 0.00 3.51
690 699 1.956477 CACACAGCCCAGTAAAAAGCT 59.044 47.619 0.00 0.00 35.52 3.74
719 728 2.703409 CCAGATAACTGCACGCGC 59.297 61.111 5.73 0.00 42.25 6.86
722 731 1.079819 AGATAACTGCACGCGCACT 60.080 52.632 5.73 0.00 45.36 4.40
726 738 2.153219 TAACTGCACGCGCACTTTCG 62.153 55.000 5.73 0.00 45.36 3.46
790 805 1.715785 CACCCAAACCAAACCCTCAT 58.284 50.000 0.00 0.00 0.00 2.90
859 874 2.075489 CGCTCTCGCCGCTTATACG 61.075 63.158 0.00 0.00 0.00 3.06
894 909 0.385751 CCACGCATCTCGACTGGTAT 59.614 55.000 0.00 0.00 41.67 2.73
960 985 3.909995 TCTTTCAAACATCTCCTCCTCCA 59.090 43.478 0.00 0.00 0.00 3.86
1007 1040 3.610669 CTCCCCGGAGATGGCGAG 61.611 72.222 0.73 0.00 44.53 5.03
1026 1059 1.054406 GGGGATCCATGGAGACGGAA 61.054 60.000 21.33 0.00 34.22 4.30
1078 1111 4.244326 ACCTCCTGGTCGAGATCG 57.756 61.111 0.00 0.00 44.78 3.69
1316 1385 1.469703 CATCTTGGATTGCTGCAACGA 59.530 47.619 18.51 9.50 0.00 3.85
1364 1439 1.699656 CGCAAGAAGCTGGATCACCG 61.700 60.000 0.00 0.00 42.61 4.94
1514 1598 3.530265 TGTGTTCGAGTTGGTAACTGT 57.470 42.857 0.00 0.00 43.03 3.55
1515 1599 3.191669 TGTGTTCGAGTTGGTAACTGTG 58.808 45.455 0.00 0.00 43.03 3.66
1523 1607 1.607148 GTTGGTAACTGTGGTGGCTTC 59.393 52.381 0.00 0.00 37.61 3.86
1565 1652 4.946772 TGATTATCGCATCAAAAAGGTGGA 59.053 37.500 0.00 0.00 29.81 4.02
1602 1689 1.340405 GCTGGAGGTTGGACACATCAT 60.340 52.381 0.00 0.00 37.99 2.45
1678 1765 4.629634 TCAGCGGAGTGTTGTATTTATGTG 59.370 41.667 0.00 0.00 0.00 3.21
1714 1801 1.375908 GCAGCCGTTGATGTGGAGA 60.376 57.895 0.00 0.00 0.00 3.71
1767 1854 1.354337 CTGATGCTCGTGGTGTTCCG 61.354 60.000 0.00 0.00 36.30 4.30
1852 1943 8.404000 CAATCTGGGTTCTTGAAGATTCTATTG 58.596 37.037 0.00 0.00 37.29 1.90
1870 1964 7.353414 TCTATTGGTGAAAATTGTTGGACAA 57.647 32.000 0.00 0.00 42.95 3.18
1967 2061 1.676968 CCCACCCAGAACACGATGA 59.323 57.895 0.00 0.00 0.00 2.92
2189 2294 7.558161 TTGTCCATGTTTCTGATGATGATAC 57.442 36.000 0.00 0.00 0.00 2.24
2201 2306 8.120140 TCTGATGATGATACTGGAGTTAGATG 57.880 38.462 0.00 0.00 0.00 2.90
2235 2357 4.156008 GCAACAGTAATCTGGGTAAGTTGG 59.844 45.833 0.00 0.00 45.14 3.77
2274 2480 7.066284 GTGCTTGATTGAAGTCATGTACCTAAT 59.934 37.037 0.00 0.00 34.83 1.73
2301 2511 3.055891 TGCTGCTAGCTATTCAGTCAACA 60.056 43.478 17.23 9.50 42.97 3.33
2401 2701 2.802816 CAGTACTCTGCCTGTGTTTGTC 59.197 50.000 0.00 0.00 34.79 3.18
2495 2875 8.938906 TCTGTTCGGTATACCAACTTTTATTTC 58.061 33.333 24.86 7.88 35.14 2.17
2590 2992 4.982701 GGCCAGGGCTGCTGTTGT 62.983 66.667 10.60 0.00 41.60 3.32
2602 3004 3.000724 GCTGCTGTTGTATTTCTAGAGCG 59.999 47.826 0.00 0.00 39.96 5.03
2603 3005 2.930040 TGCTGTTGTATTTCTAGAGCGC 59.070 45.455 0.00 0.00 39.96 5.92
2604 3006 2.285488 GCTGTTGTATTTCTAGAGCGCC 59.715 50.000 2.29 0.00 30.43 6.53
2608 3010 1.337071 TGTATTTCTAGAGCGCCCGAG 59.663 52.381 2.29 0.00 0.00 4.63
2609 3011 0.959553 TATTTCTAGAGCGCCCGAGG 59.040 55.000 2.29 0.00 0.00 4.63
2610 3012 0.755698 ATTTCTAGAGCGCCCGAGGA 60.756 55.000 2.29 0.00 0.00 3.71
2611 3013 1.664321 TTTCTAGAGCGCCCGAGGAC 61.664 60.000 2.29 0.00 0.00 3.85
2612 3014 2.517402 CTAGAGCGCCCGAGGACT 60.517 66.667 2.29 0.00 0.00 3.85
2613 3015 1.227883 CTAGAGCGCCCGAGGACTA 60.228 63.158 2.29 0.00 0.00 2.59
2614 3016 1.508808 CTAGAGCGCCCGAGGACTAC 61.509 65.000 2.29 0.00 0.00 2.73
2615 3017 2.261430 TAGAGCGCCCGAGGACTACA 62.261 60.000 2.29 0.00 0.00 2.74
2616 3018 2.442272 AGCGCCCGAGGACTACAT 60.442 61.111 2.29 0.00 0.00 2.29
2617 3019 1.152819 AGCGCCCGAGGACTACATA 60.153 57.895 2.29 0.00 0.00 2.29
2627 3029 3.566322 CGAGGACTACATACCAAGGAGAG 59.434 52.174 0.00 0.00 0.00 3.20
2629 3031 4.949121 AGGACTACATACCAAGGAGAGTT 58.051 43.478 0.00 0.00 0.00 3.01
2634 3036 7.093421 GGACTACATACCAAGGAGAGTTAGTTT 60.093 40.741 0.00 0.00 0.00 2.66
2643 3045 7.148069 ACCAAGGAGAGTTAGTTTTCTTTGTTG 60.148 37.037 0.00 0.00 0.00 3.33
2728 3187 4.932146 ACTGTTGTTTCAATGTAAGTGCC 58.068 39.130 0.00 0.00 0.00 5.01
2765 3224 6.434596 TGGTTTTGATTATCTTTGTGTCACG 58.565 36.000 0.00 0.00 0.00 4.35
2773 3232 1.663643 TCTTTGTGTCACGTTCACTGC 59.336 47.619 17.59 3.52 36.83 4.40
2774 3233 0.371989 TTTGTGTCACGTTCACTGCG 59.628 50.000 17.59 0.00 36.83 5.18
2786 3245 0.461870 TCACTGCGCTCAAAGTGTGT 60.462 50.000 20.89 0.12 43.49 3.72
2792 3251 1.065551 GCGCTCAAAGTGTGTTTCCTT 59.934 47.619 0.00 0.00 0.00 3.36
2795 3254 3.003689 CGCTCAAAGTGTGTTTCCTTCAT 59.996 43.478 0.00 0.00 0.00 2.57
2796 3255 4.293415 GCTCAAAGTGTGTTTCCTTCATG 58.707 43.478 0.00 0.00 0.00 3.07
2811 3270 5.129634 TCCTTCATGTGCAAGTTCTAACAA 58.870 37.500 0.00 0.00 0.00 2.83
2833 3298 1.729149 CGAGTTGCCCGCTTCATTTTC 60.729 52.381 0.00 0.00 0.00 2.29
2839 3304 1.733718 GCCCGCTTCATTTTCTTCAGC 60.734 52.381 0.00 0.00 0.00 4.26
2863 3328 2.368011 GGACTGGGGCACTCCTACC 61.368 68.421 0.00 0.00 35.33 3.18
2877 3342 5.178797 CACTCCTACCCAGAATTGTAACTG 58.821 45.833 0.00 0.00 0.00 3.16
2878 3343 4.844655 ACTCCTACCCAGAATTGTAACTGT 59.155 41.667 0.00 0.00 32.93 3.55
2879 3344 5.046520 ACTCCTACCCAGAATTGTAACTGTC 60.047 44.000 0.00 0.00 32.93 3.51
2880 3345 5.091552 TCCTACCCAGAATTGTAACTGTCT 58.908 41.667 0.00 0.00 32.93 3.41
2893 3358 3.567478 AACTGTCTCCTCTTGTTGCTT 57.433 42.857 0.00 0.00 0.00 3.91
2950 3417 8.050778 TCAACACAGAAACTTCTTATTGTGTT 57.949 30.769 16.26 16.26 44.51 3.32
2976 3443 8.618702 TTCCATACCGTACTTTTGATTGTTTA 57.381 30.769 0.00 0.00 0.00 2.01
2978 3445 9.233649 TCCATACCGTACTTTTGATTGTTTATT 57.766 29.630 0.00 0.00 0.00 1.40
2984 3451 9.337091 CCGTACTTTTGATTGTTTATTAAGTGG 57.663 33.333 0.00 0.00 0.00 4.00
3046 4458 6.148480 AGTCTGCACATTTGAATCAGTTCTAC 59.852 38.462 0.00 0.00 35.33 2.59
3047 4459 5.120674 TCTGCACATTTGAATCAGTTCTACG 59.879 40.000 0.00 0.00 35.33 3.51
3049 4461 4.326205 CACATTTGAATCAGTTCTACGCG 58.674 43.478 3.53 3.53 35.33 6.01
3052 4464 6.019881 CACATTTGAATCAGTTCTACGCGATA 60.020 38.462 15.93 0.00 35.33 2.92
3054 4466 7.865889 ACATTTGAATCAGTTCTACGCGATATA 59.134 33.333 15.93 0.00 35.33 0.86
3096 6254 3.358554 GGGGGAGTGGGAAGTTTTC 57.641 57.895 0.00 0.00 0.00 2.29
3110 6268 5.684550 GAAGTTTTCCAACCTGAACGTAT 57.315 39.130 0.00 0.00 32.70 3.06
3111 6269 6.068473 GAAGTTTTCCAACCTGAACGTATT 57.932 37.500 0.00 0.00 32.70 1.89
3113 6271 6.549912 AGTTTTCCAACCTGAACGTATTAC 57.450 37.500 0.00 0.00 32.70 1.89
3116 6274 5.471556 TTCCAACCTGAACGTATTACTCA 57.528 39.130 0.00 0.00 0.00 3.41
3121 6279 3.802948 CTGAACGTATTACTCAGGGCT 57.197 47.619 6.34 0.00 34.24 5.19
3122 6280 3.707793 CTGAACGTATTACTCAGGGCTC 58.292 50.000 6.34 0.00 34.24 4.70
3123 6281 3.093814 TGAACGTATTACTCAGGGCTCA 58.906 45.455 0.00 0.00 0.00 4.26
3124 6282 3.704566 TGAACGTATTACTCAGGGCTCAT 59.295 43.478 0.00 0.00 0.00 2.90
3125 6283 4.161565 TGAACGTATTACTCAGGGCTCATT 59.838 41.667 0.00 0.00 0.00 2.57
3126 6284 4.755266 ACGTATTACTCAGGGCTCATTT 57.245 40.909 0.00 0.00 0.00 2.32
3128 6286 3.809832 CGTATTACTCAGGGCTCATTTGG 59.190 47.826 0.00 0.00 0.00 3.28
3129 6287 4.683400 CGTATTACTCAGGGCTCATTTGGT 60.683 45.833 0.00 0.00 0.00 3.67
3132 6290 1.707427 ACTCAGGGCTCATTTGGTTCT 59.293 47.619 0.00 0.00 0.00 3.01
3133 6291 2.108952 ACTCAGGGCTCATTTGGTTCTT 59.891 45.455 0.00 0.00 0.00 2.52
3134 6292 2.490903 CTCAGGGCTCATTTGGTTCTTG 59.509 50.000 0.00 0.00 0.00 3.02
3137 6295 0.897621 GGCTCATTTGGTTCTTGGGG 59.102 55.000 0.00 0.00 0.00 4.96
3138 6296 1.549950 GGCTCATTTGGTTCTTGGGGA 60.550 52.381 0.00 0.00 0.00 4.81
3139 6297 2.460669 GCTCATTTGGTTCTTGGGGAT 58.539 47.619 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.994054 GTCATTACTATCTGCCATGTCATGT 59.006 40.000 11.84 0.00 0.00 3.21
181 184 0.391130 CGAGGAATCCAGCGGTGAAA 60.391 55.000 17.83 3.95 0.00 2.69
204 207 5.309543 TGGGGATCTAGTTTCAAAGAGTTCA 59.690 40.000 0.00 0.00 0.00 3.18
208 211 5.994250 TCATGGGGATCTAGTTTCAAAGAG 58.006 41.667 0.00 0.00 0.00 2.85
246 250 4.297510 TCAAAGTTGGCATCGATGTTTTG 58.702 39.130 25.47 22.96 0.00 2.44
251 255 6.791887 ATAGTATCAAAGTTGGCATCGATG 57.208 37.500 21.27 21.27 0.00 3.84
254 258 6.650807 ACCATATAGTATCAAAGTTGGCATCG 59.349 38.462 0.00 0.00 0.00 3.84
268 273 9.982651 CAGTACTAAAGTTGCACCATATAGTAT 57.017 33.333 0.00 0.00 29.98 2.12
270 275 6.761714 GCAGTACTAAAGTTGCACCATATAGT 59.238 38.462 0.00 0.00 33.32 2.12
348 354 8.367911 TCATAGAAAATTGGATCGTGTAGCTAT 58.632 33.333 0.00 0.00 0.00 2.97
354 360 5.745227 ACCTCATAGAAAATTGGATCGTGT 58.255 37.500 0.00 0.00 0.00 4.49
357 363 5.066375 TGCAACCTCATAGAAAATTGGATCG 59.934 40.000 0.00 0.00 0.00 3.69
433 439 3.878160 TGCACATCGACTACCATGTTA 57.122 42.857 0.00 0.00 30.48 2.41
437 443 1.406887 GGGTTGCACATCGACTACCAT 60.407 52.381 6.69 0.00 33.93 3.55
439 445 0.249398 AGGGTTGCACATCGACTACC 59.751 55.000 0.00 0.00 0.00 3.18
652 661 4.081365 TGTGTGTAAGTCCAAACACTCTCA 60.081 41.667 7.09 2.24 44.99 3.27
653 662 4.439057 TGTGTGTAAGTCCAAACACTCTC 58.561 43.478 7.09 0.08 44.99 3.20
654 663 4.442706 CTGTGTGTAAGTCCAAACACTCT 58.557 43.478 7.09 0.00 44.99 3.24
655 664 3.002348 GCTGTGTGTAAGTCCAAACACTC 59.998 47.826 7.09 4.35 44.99 3.51
656 665 2.943033 GCTGTGTGTAAGTCCAAACACT 59.057 45.455 7.09 0.00 44.99 3.55
657 666 2.032924 GGCTGTGTGTAAGTCCAAACAC 59.967 50.000 0.00 0.00 44.97 3.32
658 667 2.294074 GGCTGTGTGTAAGTCCAAACA 58.706 47.619 0.00 0.00 31.81 2.83
659 668 1.607148 GGGCTGTGTGTAAGTCCAAAC 59.393 52.381 0.00 0.00 39.36 2.93
660 669 1.213182 TGGGCTGTGTGTAAGTCCAAA 59.787 47.619 0.00 0.00 46.30 3.28
661 670 0.840617 TGGGCTGTGTGTAAGTCCAA 59.159 50.000 0.00 0.00 46.30 3.53
663 672 0.396811 ACTGGGCTGTGTGTAAGTCC 59.603 55.000 0.00 0.00 40.03 3.85
664 673 3.396260 TTACTGGGCTGTGTGTAAGTC 57.604 47.619 0.00 0.00 0.00 3.01
665 674 3.849563 TTTACTGGGCTGTGTGTAAGT 57.150 42.857 0.00 0.00 0.00 2.24
666 675 4.556699 GCTTTTTACTGGGCTGTGTGTAAG 60.557 45.833 0.00 0.00 0.00 2.34
667 676 3.316868 GCTTTTTACTGGGCTGTGTGTAA 59.683 43.478 0.00 0.00 0.00 2.41
668 677 2.882137 GCTTTTTACTGGGCTGTGTGTA 59.118 45.455 0.00 0.00 0.00 2.90
669 678 1.681264 GCTTTTTACTGGGCTGTGTGT 59.319 47.619 0.00 0.00 0.00 3.72
670 679 1.956477 AGCTTTTTACTGGGCTGTGTG 59.044 47.619 0.00 0.00 33.50 3.82
671 680 2.230660 GAGCTTTTTACTGGGCTGTGT 58.769 47.619 0.00 0.00 35.01 3.72
672 681 2.227388 CTGAGCTTTTTACTGGGCTGTG 59.773 50.000 0.00 0.00 35.01 3.66
673 682 2.158608 ACTGAGCTTTTTACTGGGCTGT 60.159 45.455 0.00 0.00 35.01 4.40
674 683 2.508526 ACTGAGCTTTTTACTGGGCTG 58.491 47.619 0.00 0.00 35.01 4.85
675 684 2.959465 ACTGAGCTTTTTACTGGGCT 57.041 45.000 0.00 0.00 37.77 5.19
676 685 5.447624 TTTTACTGAGCTTTTTACTGGGC 57.552 39.130 0.00 0.00 0.00 5.36
677 686 5.920840 GCTTTTTACTGAGCTTTTTACTGGG 59.079 40.000 0.00 0.00 36.01 4.45
678 687 5.920840 GGCTTTTTACTGAGCTTTTTACTGG 59.079 40.000 0.00 0.00 38.89 4.00
679 688 5.920840 GGGCTTTTTACTGAGCTTTTTACTG 59.079 40.000 0.00 0.00 38.89 2.74
680 689 5.596772 TGGGCTTTTTACTGAGCTTTTTACT 59.403 36.000 0.00 0.00 38.89 2.24
681 690 5.838529 TGGGCTTTTTACTGAGCTTTTTAC 58.161 37.500 0.00 0.00 38.89 2.01
682 691 5.830991 TCTGGGCTTTTTACTGAGCTTTTTA 59.169 36.000 0.00 0.00 38.89 1.52
683 692 4.649218 TCTGGGCTTTTTACTGAGCTTTTT 59.351 37.500 0.00 0.00 38.89 1.94
684 693 4.215109 TCTGGGCTTTTTACTGAGCTTTT 58.785 39.130 0.00 0.00 38.89 2.27
685 694 3.832527 TCTGGGCTTTTTACTGAGCTTT 58.167 40.909 0.00 0.00 38.89 3.51
686 695 3.508845 TCTGGGCTTTTTACTGAGCTT 57.491 42.857 0.00 0.00 38.89 3.74
687 696 3.728385 ATCTGGGCTTTTTACTGAGCT 57.272 42.857 0.00 0.00 38.89 4.09
688 697 4.944317 AGTTATCTGGGCTTTTTACTGAGC 59.056 41.667 0.00 0.00 38.17 4.26
689 698 5.163713 GCAGTTATCTGGGCTTTTTACTGAG 60.164 44.000 0.00 0.00 41.57 3.35
690 699 4.700213 GCAGTTATCTGGGCTTTTTACTGA 59.300 41.667 0.00 0.00 41.57 3.41
726 738 2.281484 TGCTGCGGAAGTGGAACC 60.281 61.111 0.00 0.00 37.80 3.62
882 897 3.367646 AAGAGGACATACCAGTCGAGA 57.632 47.619 0.00 0.00 42.04 4.04
883 898 4.425520 GAAAAGAGGACATACCAGTCGAG 58.574 47.826 0.00 0.00 42.04 4.04
884 899 3.194968 GGAAAAGAGGACATACCAGTCGA 59.805 47.826 0.00 0.00 42.04 4.20
885 900 3.522553 GGAAAAGAGGACATACCAGTCG 58.477 50.000 0.00 0.00 42.04 4.18
886 901 3.519913 AGGGAAAAGAGGACATACCAGTC 59.480 47.826 0.00 0.00 42.04 3.51
894 909 0.608640 GAGCGAGGGAAAAGAGGACA 59.391 55.000 0.00 0.00 0.00 4.02
944 969 1.290134 GGGTGGAGGAGGAGATGTTT 58.710 55.000 0.00 0.00 0.00 2.83
948 973 1.669927 ATCGGGGTGGAGGAGGAGAT 61.670 60.000 0.00 0.00 0.00 2.75
960 985 0.394565 GCTAATCTGCAGATCGGGGT 59.605 55.000 28.83 15.63 32.75 4.95
1007 1040 1.054406 TTCCGTCTCCATGGATCCCC 61.054 60.000 16.63 2.51 37.56 4.81
1026 1059 1.095807 TCGTCGGATCGCTCATGAGT 61.096 55.000 23.38 4.19 0.00 3.41
1316 1385 2.363147 GTCGGCAGAGGAGGAGGT 60.363 66.667 0.00 0.00 0.00 3.85
1346 1421 0.674895 ACGGTGATCCAGCTTCTTGC 60.675 55.000 0.00 0.00 43.29 4.01
1360 1435 2.415090 CGTACTCCAAAGTCCTACGGTG 60.415 54.545 0.00 0.00 36.92 4.94
1364 1439 2.560105 ACCACGTACTCCAAAGTCCTAC 59.440 50.000 0.00 0.00 36.92 3.18
1419 1494 2.196595 CAGGAATACTGGGTGGAAGGA 58.803 52.381 0.00 0.00 43.70 3.36
1477 1558 1.630369 CACATGGAAGTGGGAGGAGAA 59.370 52.381 0.00 0.00 35.88 2.87
1514 1598 2.787473 ATTCAGATTCGAAGCCACCA 57.213 45.000 10.29 0.00 0.00 4.17
1515 1599 6.483640 ACTTATAATTCAGATTCGAAGCCACC 59.516 38.462 10.29 0.00 0.00 4.61
1565 1652 4.357325 TCCAGCTTTGGAAGAGTAGATCT 58.643 43.478 0.00 0.00 41.27 2.75
1678 1765 4.222114 GCTGCAACTGAATTATTATCGGC 58.778 43.478 0.00 0.00 0.00 5.54
1767 1854 8.668510 ATTGTCCTTGTGATACATAGACATTC 57.331 34.615 12.41 0.00 39.02 2.67
1852 1943 5.050159 GCTTCATTGTCCAACAATTTTCACC 60.050 40.000 2.65 0.00 45.80 4.02
1870 1964 4.550076 AGTAGCTGACTTTGAGCTTCAT 57.450 40.909 0.00 0.00 44.65 2.57
2189 2294 6.988580 TGCTCATATTCAACATCTAACTCCAG 59.011 38.462 0.00 0.00 0.00 3.86
2201 2306 7.412853 CCAGATTACTGTTGCTCATATTCAAC 58.587 38.462 0.00 0.00 42.05 3.18
2274 2480 4.326826 ACTGAATAGCTAGCAGCACAAAA 58.673 39.130 18.83 0.00 45.56 2.44
2278 2485 3.170791 TGACTGAATAGCTAGCAGCAC 57.829 47.619 18.83 16.16 45.56 4.40
2351 2561 0.819259 TCACTCAAGCACCAACAGGC 60.819 55.000 0.00 0.00 0.00 4.85
2446 2801 5.665459 AGAAATAACAGAGACCAGAATCCG 58.335 41.667 0.00 0.00 0.00 4.18
2495 2875 8.311836 AGAATATAACCATTCATGTACTACCGG 58.688 37.037 0.00 0.00 37.38 5.28
2553 2955 1.158007 ATTCCAGGTCCACCCAAACT 58.842 50.000 0.00 0.00 36.42 2.66
2590 2992 0.959553 CCTCGGGCGCTCTAGAAATA 59.040 55.000 10.96 0.00 0.00 1.40
2602 3004 1.068741 CTTGGTATGTAGTCCTCGGGC 59.931 57.143 0.00 0.00 0.00 6.13
2603 3005 1.687123 CCTTGGTATGTAGTCCTCGGG 59.313 57.143 0.00 0.00 0.00 5.14
2604 3006 2.623889 CTCCTTGGTATGTAGTCCTCGG 59.376 54.545 0.00 0.00 0.00 4.63
2608 3010 5.892686 ACTAACTCTCCTTGGTATGTAGTCC 59.107 44.000 0.00 0.00 0.00 3.85
2609 3011 7.407393 AACTAACTCTCCTTGGTATGTAGTC 57.593 40.000 0.00 0.00 0.00 2.59
2610 3012 7.793948 AAACTAACTCTCCTTGGTATGTAGT 57.206 36.000 0.00 0.00 0.00 2.73
2611 3013 8.532819 AGAAAACTAACTCTCCTTGGTATGTAG 58.467 37.037 0.00 0.00 0.00 2.74
2612 3014 8.431910 AGAAAACTAACTCTCCTTGGTATGTA 57.568 34.615 0.00 0.00 0.00 2.29
2613 3015 7.317722 AGAAAACTAACTCTCCTTGGTATGT 57.682 36.000 0.00 0.00 0.00 2.29
2614 3016 8.507249 CAAAGAAAACTAACTCTCCTTGGTATG 58.493 37.037 0.00 0.00 0.00 2.39
2615 3017 8.218488 ACAAAGAAAACTAACTCTCCTTGGTAT 58.782 33.333 0.00 0.00 0.00 2.73
2616 3018 7.571025 ACAAAGAAAACTAACTCTCCTTGGTA 58.429 34.615 0.00 0.00 0.00 3.25
2617 3019 6.424032 ACAAAGAAAACTAACTCTCCTTGGT 58.576 36.000 0.00 0.00 0.00 3.67
2629 3031 9.921637 ACAGAAATGAAACAACAAAGAAAACTA 57.078 25.926 0.00 0.00 0.00 2.24
2634 3036 6.310956 CAGCACAGAAATGAAACAACAAAGAA 59.689 34.615 0.00 0.00 0.00 2.52
2643 3045 7.928908 TGAAAATACAGCACAGAAATGAAAC 57.071 32.000 0.00 0.00 0.00 2.78
2728 3187 4.040445 TCAAAACCAGAAAGGCGAAAAG 57.960 40.909 0.00 0.00 43.14 2.27
2765 3224 0.657840 ACACTTTGAGCGCAGTGAAC 59.342 50.000 26.65 5.42 42.74 3.18
2773 3232 2.354510 TGAAGGAAACACACTTTGAGCG 59.645 45.455 0.00 0.00 0.00 5.03
2774 3233 4.202050 ACATGAAGGAAACACACTTTGAGC 60.202 41.667 0.00 0.00 0.00 4.26
2786 3245 5.592282 TGTTAGAACTTGCACATGAAGGAAA 59.408 36.000 0.00 0.00 0.00 3.13
2792 3251 4.572795 TCGTTTGTTAGAACTTGCACATGA 59.427 37.500 0.00 0.00 0.00 3.07
2795 3254 3.936453 ACTCGTTTGTTAGAACTTGCACA 59.064 39.130 0.00 0.00 0.00 4.57
2796 3255 4.531659 ACTCGTTTGTTAGAACTTGCAC 57.468 40.909 0.00 0.00 0.00 4.57
2811 3270 0.889186 AATGAAGCGGGCAACTCGTT 60.889 50.000 0.00 0.00 33.54 3.85
2833 3298 1.077212 CCAGTCCCCATGGCTGAAG 60.077 63.158 16.86 7.52 37.74 3.02
2839 3304 4.447342 GTGCCCCAGTCCCCATGG 62.447 72.222 4.14 4.14 37.58 3.66
2863 3328 5.413309 AGAGGAGACAGTTACAATTCTGG 57.587 43.478 0.00 0.00 36.17 3.86
2877 3342 5.009010 TGAATTCAAAGCAACAAGAGGAGAC 59.991 40.000 5.45 0.00 0.00 3.36
2878 3343 5.132502 TGAATTCAAAGCAACAAGAGGAGA 58.867 37.500 5.45 0.00 0.00 3.71
2879 3344 5.443185 TGAATTCAAAGCAACAAGAGGAG 57.557 39.130 5.45 0.00 0.00 3.69
2880 3345 5.535783 TCATGAATTCAAAGCAACAAGAGGA 59.464 36.000 13.09 0.00 0.00 3.71
2893 3358 7.337938 TGCAAGTAGGTAGATCATGAATTCAA 58.662 34.615 13.09 0.00 0.00 2.69
2948 3415 7.364970 ACAATCAAAAGTACGGTATGGAAAAC 58.635 34.615 0.00 0.00 0.00 2.43
2950 3417 7.513371 AACAATCAAAAGTACGGTATGGAAA 57.487 32.000 0.00 0.00 0.00 3.13
2976 3443 9.310449 ACGTTCTCCAGATATATACCACTTAAT 57.690 33.333 0.00 0.00 0.00 1.40
2978 3445 8.701908 AACGTTCTCCAGATATATACCACTTA 57.298 34.615 0.00 0.00 0.00 2.24
2984 3451 9.347934 CAATCTGAACGTTCTCCAGATATATAC 57.652 37.037 27.32 0.00 44.26 1.47
3079 6237 3.358554 GGAAAACTTCCCACTCCCC 57.641 57.895 0.00 0.00 44.30 4.81
3081 6239 2.424379 AGGTTGGAAAACTTCCCACTCC 60.424 50.000 8.93 0.00 45.56 3.85
3082 6240 2.623416 CAGGTTGGAAAACTTCCCACTC 59.377 50.000 8.93 1.62 45.56 3.51
3083 6241 2.243736 TCAGGTTGGAAAACTTCCCACT 59.756 45.455 8.93 0.38 45.56 4.00
3084 6242 2.661718 TCAGGTTGGAAAACTTCCCAC 58.338 47.619 3.03 2.41 45.56 4.61
3085 6243 3.028130 GTTCAGGTTGGAAAACTTCCCA 58.972 45.455 3.03 0.00 45.56 4.37
3086 6244 2.034179 CGTTCAGGTTGGAAAACTTCCC 59.966 50.000 3.03 0.00 45.56 3.97
3087 6245 2.686405 ACGTTCAGGTTGGAAAACTTCC 59.314 45.455 0.00 0.00 45.56 3.46
3088 6246 5.684550 ATACGTTCAGGTTGGAAAACTTC 57.315 39.130 0.00 0.00 45.56 3.01
3091 6249 6.203338 TGAGTAATACGTTCAGGTTGGAAAAC 59.797 38.462 0.00 0.00 0.00 2.43
3092 6250 6.289834 TGAGTAATACGTTCAGGTTGGAAAA 58.710 36.000 0.00 0.00 0.00 2.29
3093 6251 5.856156 TGAGTAATACGTTCAGGTTGGAAA 58.144 37.500 0.00 0.00 0.00 3.13
3094 6252 5.471556 TGAGTAATACGTTCAGGTTGGAA 57.528 39.130 0.00 0.00 0.00 3.53
3095 6253 5.068234 CTGAGTAATACGTTCAGGTTGGA 57.932 43.478 6.34 0.00 35.75 3.53
3101 6259 3.130516 TGAGCCCTGAGTAATACGTTCAG 59.869 47.826 7.14 7.14 38.41 3.02
3106 6264 3.809832 CCAAATGAGCCCTGAGTAATACG 59.190 47.826 0.00 0.00 0.00 3.06
3107 6265 4.781934 ACCAAATGAGCCCTGAGTAATAC 58.218 43.478 0.00 0.00 0.00 1.89
3109 6267 4.018050 AGAACCAAATGAGCCCTGAGTAAT 60.018 41.667 0.00 0.00 0.00 1.89
3110 6268 3.330701 AGAACCAAATGAGCCCTGAGTAA 59.669 43.478 0.00 0.00 0.00 2.24
3111 6269 2.912956 AGAACCAAATGAGCCCTGAGTA 59.087 45.455 0.00 0.00 0.00 2.59
3113 6271 2.490903 CAAGAACCAAATGAGCCCTGAG 59.509 50.000 0.00 0.00 0.00 3.35
3116 6274 1.550869 CCCAAGAACCAAATGAGCCCT 60.551 52.381 0.00 0.00 0.00 5.19
3118 6276 0.897621 CCCCAAGAACCAAATGAGCC 59.102 55.000 0.00 0.00 0.00 4.70
3119 6277 1.923356 TCCCCAAGAACCAAATGAGC 58.077 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.