Multiple sequence alignment - TraesCS3B01G498200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G498200 chr3B 100.000 5634 0 0 2472 8105 741858587 741864220 0.000000e+00 10327
1 TraesCS3B01G498200 chr3B 100.000 2239 0 0 1 2239 741856116 741858354 0.000000e+00 4135
2 TraesCS3B01G498200 chr3D 97.166 3564 65 10 2504 6056 559073196 559076734 0.000000e+00 5989
3 TraesCS3B01G498200 chr3D 94.222 2250 100 12 1 2234 559070953 559073188 0.000000e+00 3408
4 TraesCS3B01G498200 chr3D 92.435 1084 48 13 6122 7178 559077023 559078099 0.000000e+00 1517
5 TraesCS3B01G498200 chr3D 94.023 686 30 6 7365 8042 559078136 559078818 0.000000e+00 1029
6 TraesCS3B01G498200 chr3D 89.253 549 51 7 4 550 533666609 533666067 0.000000e+00 680
7 TraesCS3B01G498200 chr3D 89.333 150 13 3 7215 7363 181140439 181140292 1.390000e-42 185
8 TraesCS3B01G498200 chr3A 96.832 3567 67 10 2504 6062 695497225 695500753 0.000000e+00 5919
9 TraesCS3B01G498200 chr3A 92.412 1700 79 16 551 2234 695495552 695497217 0.000000e+00 2379
10 TraesCS3B01G498200 chr3A 88.654 1137 59 34 6096 7200 695500973 695502071 0.000000e+00 1321
11 TraesCS3B01G498200 chr3A 93.786 692 34 4 7359 8042 695502082 695502772 0.000000e+00 1031
12 TraesCS3B01G498200 chr3A 95.946 148 5 1 7214 7361 719628413 719628267 1.050000e-58 239
13 TraesCS3B01G498200 chr6D 89.550 555 50 8 1 550 70528739 70529290 0.000000e+00 697
14 TraesCS3B01G498200 chr4B 89.617 549 55 2 4 551 489267646 489268193 0.000000e+00 697
15 TraesCS3B01G498200 chr4B 85.714 175 19 4 7214 7386 369280579 369280409 6.460000e-41 180
16 TraesCS3B01G498200 chr1D 89.114 542 54 5 11 550 305798386 305797848 0.000000e+00 669
17 TraesCS3B01G498200 chr1D 88.768 552 51 10 4 550 8412922 8412377 0.000000e+00 665
18 TraesCS3B01G498200 chr1D 88.768 552 51 10 4 550 8444417 8443872 0.000000e+00 665
19 TraesCS3B01G498200 chr5B 88.869 548 53 7 5 548 246874072 246874615 0.000000e+00 667
20 TraesCS3B01G498200 chr5B 88.742 151 13 4 7215 7364 161709335 161709188 1.800000e-41 182
21 TraesCS3B01G498200 chrUn 88.768 552 51 10 4 550 296004528 296003983 0.000000e+00 665
22 TraesCS3B01G498200 chr5A 91.355 428 36 1 2472 2898 149229751 149230178 1.170000e-162 584
23 TraesCS3B01G498200 chr5A 91.121 428 36 2 2472 2898 110283704 110283278 5.450000e-161 579
24 TraesCS3B01G498200 chr5A 91.558 154 6 2 7215 7361 570012541 570012694 1.070000e-48 206
25 TraesCS3B01G498200 chr1A 96.599 147 4 1 7215 7361 326009362 326009217 8.130000e-60 243
26 TraesCS3B01G498200 chr4A 91.391 151 11 2 7214 7364 736265379 736265527 1.070000e-48 206
27 TraesCS3B01G498200 chr2B 90.541 148 7 6 7215 7361 455464181 455464322 1.070000e-43 189
28 TraesCS3B01G498200 chr7A 87.349 166 11 4 7205 7361 706517185 706517349 1.800000e-41 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G498200 chr3B 741856116 741864220 8104 False 7231.00 10327 100.0000 1 8105 2 chr3B.!!$F1 8104
1 TraesCS3B01G498200 chr3D 559070953 559078818 7865 False 2985.75 5989 94.4615 1 8042 4 chr3D.!!$F1 8041
2 TraesCS3B01G498200 chr3D 533666067 533666609 542 True 680.00 680 89.2530 4 550 1 chr3D.!!$R2 546
3 TraesCS3B01G498200 chr3A 695495552 695502772 7220 False 2662.50 5919 92.9210 551 8042 4 chr3A.!!$F1 7491
4 TraesCS3B01G498200 chr6D 70528739 70529290 551 False 697.00 697 89.5500 1 550 1 chr6D.!!$F1 549
5 TraesCS3B01G498200 chr4B 489267646 489268193 547 False 697.00 697 89.6170 4 551 1 chr4B.!!$F1 547
6 TraesCS3B01G498200 chr1D 305797848 305798386 538 True 669.00 669 89.1140 11 550 1 chr1D.!!$R3 539
7 TraesCS3B01G498200 chr1D 8412377 8412922 545 True 665.00 665 88.7680 4 550 1 chr1D.!!$R1 546
8 TraesCS3B01G498200 chr1D 8443872 8444417 545 True 665.00 665 88.7680 4 550 1 chr1D.!!$R2 546
9 TraesCS3B01G498200 chr5B 246874072 246874615 543 False 667.00 667 88.8690 5 548 1 chr5B.!!$F1 543
10 TraesCS3B01G498200 chrUn 296003983 296004528 545 True 665.00 665 88.7680 4 550 1 chrUn.!!$R1 546


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 192 0.553819 AGATGACGGAGCCTAGGAGT 59.446 55.000 14.75 6.13 0.00 3.85 F
756 765 0.952497 GTTCTTCGACCCGGGGAAAC 60.952 60.000 27.92 14.80 0.00 2.78 F
1418 1438 0.746563 TCGATTGGAATGGGTTCGCC 60.747 55.000 0.00 0.00 35.10 5.54 F
2500 2528 1.596727 CGAGGAGAAATAAGCAGCTGC 59.403 52.381 31.53 31.53 42.49 5.25 F
2663 2691 1.628846 TCACCCTGGCTAAGAAGGTTC 59.371 52.381 0.00 0.00 0.00 3.62 F
4556 4595 1.108727 TTGTTGGAAGCCAGGCTGTG 61.109 55.000 17.05 6.19 39.62 3.66 F
6262 6525 0.889994 GCATGTGTTGCCTGGATGAA 59.110 50.000 0.00 0.00 46.15 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 1024 0.462789 AGTTATAGAACACGGGGGCG 59.537 55.000 2.62 0.00 38.10 6.13 R
2493 2521 0.383231 ACAAAAGTGTCAGCAGCTGC 59.617 50.000 31.53 31.53 35.34 5.25 R
2890 2918 1.070134 ACCAGTAGCTCGAACTTGCAA 59.930 47.619 0.00 0.00 0.00 4.08 R
4444 4483 0.039764 TTGGAGAGAGGAAGGAGCGA 59.960 55.000 0.00 0.00 0.00 4.93 R
4613 4652 3.745975 TCGATGTGTGAACAATCTTCACC 59.254 43.478 10.02 3.69 46.01 4.02 R
6360 6642 2.223805 GCTTTTTGGACAGGAACACAGG 60.224 50.000 0.00 0.00 0.00 4.00 R
7210 7516 0.033306 AGGAACGGAGGGAGTAGGTC 60.033 60.000 0.00 0.00 0.00 3.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 67 6.977244 AGGTATAGCCCATTCCTTTGATAT 57.023 37.500 0.00 0.00 38.26 1.63
189 192 0.553819 AGATGACGGAGCCTAGGAGT 59.446 55.000 14.75 6.13 0.00 3.85
261 264 1.970114 GAGACCACCGACGACCAGA 60.970 63.158 0.00 0.00 0.00 3.86
302 305 1.986882 CAGGAGGTCTGTGCCTTTTT 58.013 50.000 0.00 0.00 39.34 1.94
368 372 8.088981 ACTTGTTTACTTATGTCTGTACTCAGG 58.911 37.037 0.00 0.00 41.59 3.86
369 373 6.395629 TGTTTACTTATGTCTGTACTCAGGC 58.604 40.000 0.00 0.00 45.48 4.85
398 402 3.062774 GCTTCCGCTGACTCTTTTGTATC 59.937 47.826 0.00 0.00 0.00 2.24
581 587 1.154093 GATCTTGGTCGACGACGCA 60.154 57.895 20.92 16.59 39.58 5.24
597 605 2.459442 GCATGTCGCACTGCTCTCC 61.459 63.158 0.00 0.00 41.79 3.71
747 756 1.137513 CAACTCGTGGTTCTTCGACC 58.862 55.000 0.00 0.00 40.23 4.79
756 765 0.952497 GTTCTTCGACCCGGGGAAAC 60.952 60.000 27.92 14.80 0.00 2.78
758 767 1.071814 CTTCGACCCGGGGAAACAA 59.928 57.895 27.92 8.90 0.00 2.83
760 769 2.992607 TTCGACCCGGGGAAACAACG 62.993 60.000 27.92 17.14 0.00 4.10
762 771 4.960866 ACCCGGGGAAACAACGGC 62.961 66.667 27.92 0.00 46.94 5.68
814 823 2.296792 GCAACCAAACAAAGCCCAAAT 58.703 42.857 0.00 0.00 0.00 2.32
846 855 4.401925 AGCCTTGAGATATGCAATAACCC 58.598 43.478 0.00 0.00 29.06 4.11
873 882 1.470458 GCAAGGGCTCTAAATGCAAGC 60.470 52.381 3.80 0.00 37.00 4.01
903 912 5.508567 TGAACAAGGGCATGATTGAGAATA 58.491 37.500 11.33 0.00 0.00 1.75
984 994 2.091541 CCCGCAACAGTACAATGGAAT 58.908 47.619 0.00 0.00 0.00 3.01
988 998 3.483574 CGCAACAGTACAATGGAATCGAC 60.484 47.826 0.00 0.00 0.00 4.20
1004 1014 3.157217 GACCGATGATCCGCAGCCT 62.157 63.158 0.00 0.00 0.00 4.58
1289 1307 3.723922 CCGGGAATGGTTCGGGGT 61.724 66.667 0.00 0.00 40.07 4.95
1291 1309 2.044352 GGGAATGGTTCGGGGTGG 60.044 66.667 0.00 0.00 0.00 4.61
1304 1324 1.616628 GGGTGGGATGTGGAGGTCT 60.617 63.158 0.00 0.00 0.00 3.85
1321 1341 4.750695 TGGCGGGGGATCAGGGAA 62.751 66.667 0.00 0.00 0.00 3.97
1384 1404 5.466819 CATCCATCCATCCATTTCGATTTG 58.533 41.667 0.00 0.00 0.00 2.32
1418 1438 0.746563 TCGATTGGAATGGGTTCGCC 60.747 55.000 0.00 0.00 35.10 5.54
1423 1443 2.746277 GAATGGGTTCGCCGCAGT 60.746 61.111 0.00 0.00 39.65 4.40
1428 1448 2.740826 GGTTCGCCGCAGTTAGCA 60.741 61.111 0.00 0.00 46.13 3.49
1444 1464 7.119360 GCAGTTAGCATTTTGTTCTTTGTTTC 58.881 34.615 0.00 0.00 44.79 2.78
1485 1505 6.834168 TTTGGGTTTGGCATTTTTGTTTTA 57.166 29.167 0.00 0.00 0.00 1.52
1619 1639 3.750371 CCTCTGTGGGTTAACAATCACA 58.250 45.455 19.96 19.96 37.73 3.58
1665 1685 7.944061 TGATTGCCATCAGTATAAAAGAATGG 58.056 34.615 0.00 0.00 34.22 3.16
1712 1732 3.321039 TCCATATCTTCAGGCAGGACAT 58.679 45.455 0.00 0.00 0.00 3.06
1751 1771 7.047271 AGTTCCAGATGATAGAAAAGAAGAGC 58.953 38.462 0.00 0.00 0.00 4.09
2131 2159 8.067784 TGTAAGAAGTTGTTTCTCTTTTATGCG 58.932 33.333 0.00 0.00 45.41 4.73
2139 2167 5.468409 TGTTTCTCTTTTATGCGTGTCATCA 59.532 36.000 0.00 0.00 36.63 3.07
2185 2213 7.978975 GCTGGTTGGCAAATTTCTATAAACATA 59.021 33.333 0.00 0.00 0.00 2.29
2234 2262 9.255304 TCACCTTATGAACAAAAAGCATTTAAC 57.745 29.630 0.00 0.00 32.71 2.01
2235 2263 9.039870 CACCTTATGAACAAAAAGCATTTAACA 57.960 29.630 0.00 0.00 37.28 2.41
2237 2265 8.213812 CCTTATGAACAAAAAGCATTTAACACG 58.786 33.333 0.00 0.00 37.28 4.49
2494 2522 4.442706 TGGTCAATCGAGGAGAAATAAGC 58.557 43.478 0.00 0.00 0.00 3.09
2495 2523 4.081142 TGGTCAATCGAGGAGAAATAAGCA 60.081 41.667 0.00 0.00 0.00 3.91
2496 2524 4.509600 GGTCAATCGAGGAGAAATAAGCAG 59.490 45.833 0.00 0.00 0.00 4.24
2497 2525 4.025313 GTCAATCGAGGAGAAATAAGCAGC 60.025 45.833 0.00 0.00 0.00 5.25
2498 2526 4.125703 CAATCGAGGAGAAATAAGCAGCT 58.874 43.478 0.00 0.00 0.00 4.24
2499 2527 3.170791 TCGAGGAGAAATAAGCAGCTG 57.829 47.619 10.11 10.11 0.00 4.24
2500 2528 1.596727 CGAGGAGAAATAAGCAGCTGC 59.403 52.381 31.53 31.53 42.49 5.25
2624 2652 9.656323 TTATCTACATACTACAGAGATGGGTTT 57.344 33.333 0.00 0.00 0.00 3.27
2663 2691 1.628846 TCACCCTGGCTAAGAAGGTTC 59.371 52.381 0.00 0.00 0.00 3.62
2690 2718 4.494484 AGAAGCACAAAACTGTCAAAACC 58.506 39.130 0.00 0.00 0.00 3.27
2802 2830 3.392947 TCTGTTGGTTACCTTCCATGTCA 59.607 43.478 2.07 0.00 34.75 3.58
2808 2836 3.119495 GGTTACCTTCCATGTCAATGCAC 60.119 47.826 0.00 0.00 31.93 4.57
2809 2837 2.291209 ACCTTCCATGTCAATGCACA 57.709 45.000 0.00 0.00 31.93 4.57
2890 2918 3.034635 GTCCTGTCATCTATGTCTGGGT 58.965 50.000 11.23 0.00 36.28 4.51
2963 2991 4.130857 TGAAATGTGAACTCGTAAGGCAA 58.869 39.130 0.00 0.00 38.47 4.52
3091 3127 6.291648 CTACCCATAGCACATCATGTCTAT 57.708 41.667 0.00 0.00 0.00 1.98
3174 3210 4.437930 GCATGTGGCTGTCTCTTCAAATAC 60.438 45.833 0.00 0.00 40.25 1.89
3308 3344 6.702716 TCCTTATTTTCCAAACACTTCGTT 57.297 33.333 0.00 0.00 40.50 3.85
3340 3376 8.635765 TTGGGCTTATTATATTCTTAGGCTTG 57.364 34.615 0.00 0.00 0.00 4.01
3482 3518 2.621998 CCAATTGTCATCATCTGGCTCC 59.378 50.000 4.43 0.00 0.00 4.70
3639 3675 6.852420 ACTGCTTTCTATGACAGGTTAGTA 57.148 37.500 0.00 0.00 34.40 1.82
3656 3692 9.302345 CAGGTTAGTAACTGTCAACATATACAG 57.698 37.037 12.65 2.43 46.84 2.74
3674 3710 3.313791 ACAGGGGGTAAAATTGTGCTTT 58.686 40.909 0.00 0.00 0.00 3.51
3677 3713 2.065512 GGGGTAAAATTGTGCTTTGCG 58.934 47.619 0.00 0.00 0.00 4.85
3681 3717 4.291783 GGTAAAATTGTGCTTTGCGTGTA 58.708 39.130 0.00 0.00 0.00 2.90
3682 3718 4.147479 GGTAAAATTGTGCTTTGCGTGTAC 59.853 41.667 0.00 0.00 0.00 2.90
3683 3719 3.428746 AAATTGTGCTTTGCGTGTACA 57.571 38.095 0.00 0.00 0.00 2.90
3684 3720 3.641437 AATTGTGCTTTGCGTGTACAT 57.359 38.095 0.00 0.00 30.79 2.29
3685 3721 3.641437 ATTGTGCTTTGCGTGTACATT 57.359 38.095 0.00 0.00 30.79 2.71
3686 3722 2.679355 TGTGCTTTGCGTGTACATTC 57.321 45.000 0.00 0.00 0.00 2.67
3687 3723 2.217750 TGTGCTTTGCGTGTACATTCT 58.782 42.857 0.00 0.00 0.00 2.40
3688 3724 2.032117 TGTGCTTTGCGTGTACATTCTG 60.032 45.455 0.00 0.00 0.00 3.02
3689 3725 2.032030 GTGCTTTGCGTGTACATTCTGT 60.032 45.455 0.00 0.00 0.00 3.41
3690 3726 3.185594 GTGCTTTGCGTGTACATTCTGTA 59.814 43.478 0.00 0.00 0.00 2.74
3691 3727 3.431912 TGCTTTGCGTGTACATTCTGTAG 59.568 43.478 0.00 0.00 32.84 2.74
3692 3728 3.432252 GCTTTGCGTGTACATTCTGTAGT 59.568 43.478 0.00 0.00 32.84 2.73
3693 3729 4.624024 GCTTTGCGTGTACATTCTGTAGTA 59.376 41.667 0.00 0.00 32.84 1.82
3694 3730 5.119588 GCTTTGCGTGTACATTCTGTAGTAA 59.880 40.000 0.00 0.00 32.84 2.24
3695 3731 6.347079 GCTTTGCGTGTACATTCTGTAGTAAA 60.347 38.462 0.00 0.00 32.84 2.01
3696 3732 7.479897 TTTGCGTGTACATTCTGTAGTAAAA 57.520 32.000 0.00 0.00 32.84 1.52
3697 3733 7.479897 TTGCGTGTACATTCTGTAGTAAAAA 57.520 32.000 0.00 0.00 32.84 1.94
4064 4100 6.940298 TGACATTTCCCAAAGAACCTAGTTAG 59.060 38.462 0.00 0.00 32.95 2.34
4379 4418 9.645059 TTTTTATCAAAGAACATGTTTCACACA 57.355 25.926 13.36 0.00 40.71 3.72
4422 4461 4.141733 CCATCCCAGGTTTTTGAACTTGTT 60.142 41.667 1.64 0.00 0.00 2.83
4432 4471 6.308041 GGTTTTTGAACTTGTTTCTCACTCAC 59.692 38.462 0.00 0.00 34.97 3.51
4434 4473 3.541632 TGAACTTGTTTCTCACTCACCC 58.458 45.455 0.00 0.00 34.97 4.61
4556 4595 1.108727 TTGTTGGAAGCCAGGCTGTG 61.109 55.000 17.05 6.19 39.62 3.66
4586 4625 6.965500 CAGCAACATTCTCTATTGTAAAGCAG 59.035 38.462 0.00 0.00 0.00 4.24
4733 4772 5.163290 TGCATTCGGTGATACAACCCTTATA 60.163 40.000 0.00 0.00 36.84 0.98
4833 4872 7.365497 TCCAGCATTCTCATTTACTGATAGA 57.635 36.000 0.00 0.00 32.10 1.98
4964 5003 8.761575 ACATAATATTTGCCTTGTTGTTTCTG 57.238 30.769 0.00 0.00 0.00 3.02
4973 5012 6.872920 TGCCTTGTTGTTTCTGTTATTCTTT 58.127 32.000 0.00 0.00 0.00 2.52
5020 5059 2.484417 CCTCATCCCTCATGAAGGTTCG 60.484 54.545 10.22 0.90 44.56 3.95
5549 5588 2.257034 GTGATAAGAACCACCGACGAC 58.743 52.381 0.00 0.00 0.00 4.34
5962 6001 4.481368 TTTACTATGTGTAGCCTGGTGG 57.519 45.455 0.00 0.00 32.08 4.61
6041 6080 5.176406 GTCACCGGTTAAAACTGACTAGTTC 59.824 44.000 2.97 0.00 46.14 3.01
6046 6085 6.351626 CCGGTTAAAACTGACTAGTTCCCTAT 60.352 42.308 0.00 0.00 46.14 2.57
6049 6088 7.277319 GGTTAAAACTGACTAGTTCCCTATTCG 59.723 40.741 0.00 0.00 46.14 3.34
6062 6101 4.236195 TCCCTATTCGGATACCATTTGGA 58.764 43.478 3.01 0.00 35.02 3.53
6063 6102 4.849810 TCCCTATTCGGATACCATTTGGAT 59.150 41.667 3.01 0.00 35.02 3.41
6064 6103 6.026834 TCCCTATTCGGATACCATTTGGATA 58.973 40.000 3.01 0.00 35.02 2.59
6065 6104 6.502510 TCCCTATTCGGATACCATTTGGATAA 59.497 38.462 3.01 0.00 35.02 1.75
6066 6105 7.183839 TCCCTATTCGGATACCATTTGGATAAT 59.816 37.037 3.01 0.00 35.02 1.28
6067 6106 7.283127 CCCTATTCGGATACCATTTGGATAATG 59.717 40.741 3.01 0.00 35.02 1.90
6068 6107 5.957842 TTCGGATACCATTTGGATAATGC 57.042 39.130 3.01 0.00 38.94 3.56
6069 6108 4.331968 TCGGATACCATTTGGATAATGCC 58.668 43.478 3.01 0.00 38.94 4.40
6070 6109 4.042809 TCGGATACCATTTGGATAATGCCT 59.957 41.667 3.01 0.00 38.94 4.75
6071 6110 4.766891 CGGATACCATTTGGATAATGCCTT 59.233 41.667 3.01 0.00 38.94 4.35
6072 6111 5.106157 CGGATACCATTTGGATAATGCCTTC 60.106 44.000 3.01 0.00 38.94 3.46
6073 6112 6.012745 GGATACCATTTGGATAATGCCTTCT 58.987 40.000 3.01 0.00 38.94 2.85
6117 6342 5.794687 TGCTTACTGTTTATGTTCCATCG 57.205 39.130 0.00 0.00 0.00 3.84
6155 6417 3.884895 TCCTTTATGCCATTGTCATCGT 58.115 40.909 0.00 0.00 0.00 3.73
6160 6422 0.904649 TGCCATTGTCATCGTCCTCT 59.095 50.000 0.00 0.00 0.00 3.69
6202 6464 3.817709 TCCCCTTGCTTTTTGAAGTTG 57.182 42.857 0.00 0.00 0.00 3.16
6204 6466 3.118811 TCCCCTTGCTTTTTGAAGTTGTG 60.119 43.478 0.00 0.00 0.00 3.33
6262 6525 0.889994 GCATGTGTTGCCTGGATGAA 59.110 50.000 0.00 0.00 46.15 2.57
6311 6575 8.060020 TCTAATGTGAAAACATTGCGAAAAAG 57.940 30.769 13.04 2.68 40.20 2.27
6312 6576 6.660887 AATGTGAAAACATTGCGAAAAAGT 57.339 29.167 3.39 0.00 38.72 2.66
6313 6577 5.694674 TGTGAAAACATTGCGAAAAAGTC 57.305 34.783 0.00 0.00 0.00 3.01
6314 6578 5.164233 TGTGAAAACATTGCGAAAAAGTCA 58.836 33.333 0.00 0.00 0.00 3.41
6316 6580 4.564769 TGAAAACATTGCGAAAAAGTCACC 59.435 37.500 0.00 0.00 0.00 4.02
6338 6620 9.674068 TCACCTGCTTTATACATGTGTTAATTA 57.326 29.630 9.11 0.00 35.79 1.40
6397 6679 6.603997 TCCAAAAAGCAAACTAGTTGGAAGTA 59.396 34.615 14.52 0.00 42.09 2.24
6432 6714 6.172630 CAACTATTTTGCCCCTAAATTTGCT 58.827 36.000 0.00 0.00 0.00 3.91
6443 6725 5.423290 CCCCTAAATTTGCTTTTCCTCTCAT 59.577 40.000 0.00 0.00 0.00 2.90
6452 6742 7.907214 TTGCTTTTCCTCTCATTAAGTACTC 57.093 36.000 0.00 0.00 0.00 2.59
6506 6798 5.948162 AGGTGCTCAAACAATTATGTCTCAT 59.052 36.000 0.00 0.00 39.40 2.90
6582 6874 1.835267 GTTCCCGGTGCCCCTTTTT 60.835 57.895 0.00 0.00 0.00 1.94
6586 6878 2.570284 CCGGTGCCCCTTTTTGACC 61.570 63.158 0.00 0.00 0.00 4.02
6618 6910 6.630071 TCGTAGTCAGATGATTGTCATTTCA 58.370 36.000 0.00 0.00 37.20 2.69
6658 6950 6.839124 TTGAAAGTATTGTCATTCTGGCAT 57.161 33.333 0.00 0.00 29.04 4.40
6689 6981 7.775093 TCTTCTTTCTTGAACTGAATTGAAGGA 59.225 33.333 1.69 0.00 36.38 3.36
6690 6982 7.502120 TCTTTCTTGAACTGAATTGAAGGAG 57.498 36.000 0.00 0.00 32.76 3.69
6691 6983 6.488006 TCTTTCTTGAACTGAATTGAAGGAGG 59.512 38.462 0.00 0.00 32.76 4.30
6700 6992 4.836825 TGAATTGAAGGAGGTGTCTGATC 58.163 43.478 0.00 0.00 0.00 2.92
6706 6998 3.971245 AGGAGGTGTCTGATCAGAAAC 57.029 47.619 30.62 30.62 43.39 2.78
6728 7021 0.112412 TTTCCTCCCTTTCCAGTGCC 59.888 55.000 0.00 0.00 0.00 5.01
6866 7159 2.563976 GCGCTGTGCATGTTAATATCG 58.436 47.619 8.57 0.00 45.45 2.92
6972 7276 4.812626 TGTACTTCTTCTTTTGGGAACGAC 59.187 41.667 0.00 0.00 0.00 4.34
7007 7311 6.081536 CGATTTTGTCGCATAAATTTTGCT 57.918 33.333 17.37 3.67 44.33 3.91
7039 7343 7.070571 CCCCCTTAATCTGTATAAATTTTGCCA 59.929 37.037 0.00 0.00 0.00 4.92
7095 7400 4.939255 AGAATGGTGTCATCCAAATTCCT 58.061 39.130 0.00 0.00 41.09 3.36
7188 7494 4.403432 CCTCCCTGTGCAAACATATGAAAT 59.597 41.667 10.38 0.00 0.00 2.17
7200 7506 5.074584 ACATATGAAATGCATGCACACAA 57.925 34.783 25.37 10.07 37.87 3.33
7201 7507 4.865925 ACATATGAAATGCATGCACACAAC 59.134 37.500 25.37 13.17 37.87 3.32
7202 7508 2.884894 TGAAATGCATGCACACAACA 57.115 40.000 25.37 15.58 0.00 3.33
7203 7509 2.471818 TGAAATGCATGCACACAACAC 58.528 42.857 25.37 10.73 0.00 3.32
7204 7510 2.159142 TGAAATGCATGCACACAACACA 60.159 40.909 25.37 13.14 0.00 3.72
7205 7511 2.598686 AATGCATGCACACAACACAA 57.401 40.000 25.37 0.00 0.00 3.33
7206 7512 2.143008 ATGCATGCACACAACACAAG 57.857 45.000 25.37 0.00 0.00 3.16
7207 7513 0.816373 TGCATGCACACAACACAAGT 59.184 45.000 18.46 0.00 0.00 3.16
7208 7514 1.202203 GCATGCACACAACACAAGTG 58.798 50.000 14.21 0.00 42.56 3.16
7221 7527 2.400467 ACAAGTGTGACCTACTCCCT 57.600 50.000 0.00 0.00 0.00 4.20
7222 7528 2.249139 ACAAGTGTGACCTACTCCCTC 58.751 52.381 0.00 0.00 0.00 4.30
7223 7529 1.550976 CAAGTGTGACCTACTCCCTCC 59.449 57.143 0.00 0.00 0.00 4.30
7224 7530 0.323542 AGTGTGACCTACTCCCTCCG 60.324 60.000 0.00 0.00 0.00 4.63
7225 7531 0.611340 GTGTGACCTACTCCCTCCGT 60.611 60.000 0.00 0.00 0.00 4.69
7226 7532 0.113776 TGTGACCTACTCCCTCCGTT 59.886 55.000 0.00 0.00 0.00 4.44
7227 7533 0.816373 GTGACCTACTCCCTCCGTTC 59.184 60.000 0.00 0.00 0.00 3.95
7228 7534 0.324091 TGACCTACTCCCTCCGTTCC 60.324 60.000 0.00 0.00 0.00 3.62
7229 7535 0.033306 GACCTACTCCCTCCGTTCCT 60.033 60.000 0.00 0.00 0.00 3.36
7230 7536 1.213926 GACCTACTCCCTCCGTTCCTA 59.786 57.143 0.00 0.00 0.00 2.94
7231 7537 1.642762 ACCTACTCCCTCCGTTCCTAA 59.357 52.381 0.00 0.00 0.00 2.69
7232 7538 2.043526 ACCTACTCCCTCCGTTCCTAAA 59.956 50.000 0.00 0.00 0.00 1.85
7233 7539 3.306613 CCTACTCCCTCCGTTCCTAAAT 58.693 50.000 0.00 0.00 0.00 1.40
7234 7540 4.078980 ACCTACTCCCTCCGTTCCTAAATA 60.079 45.833 0.00 0.00 0.00 1.40
7235 7541 4.280425 CCTACTCCCTCCGTTCCTAAATAC 59.720 50.000 0.00 0.00 0.00 1.89
7236 7542 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
7237 7543 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
7238 7544 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
7239 7545 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
7240 7546 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
7241 7547 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
7242 7548 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
7243 7549 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
7244 7550 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
7245 7551 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
7246 7552 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
7247 7553 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
7248 7554 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
7249 7555 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
7250 7556 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
7251 7557 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
7252 7558 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
7253 7559 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
7255 7561 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
7256 7562 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
7257 7563 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
7258 7564 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
7259 7565 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
7260 7566 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
7261 7567 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
7262 7568 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
7263 7569 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
7264 7570 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
7265 7571 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
7266 7572 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
7267 7573 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
7268 7574 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
7269 7575 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
7270 7576 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
7271 7577 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
7272 7578 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
7273 7579 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
7274 7580 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
7275 7581 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
7276 7582 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
7277 7583 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
7278 7584 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
7279 7585 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
7280 7586 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
7281 7587 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
7282 7588 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
7283 7589 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
7284 7590 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
7285 7591 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
7286 7592 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
7287 7593 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
7288 7594 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
7289 7595 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
7290 7596 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
7291 7597 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
7292 7598 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
7293 7599 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
7294 7600 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
7295 7601 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
7304 7610 2.893637 GTGAATCTACACTGCATCCGT 58.106 47.619 0.00 0.00 37.73 4.69
7305 7611 4.041740 GTGAATCTACACTGCATCCGTA 57.958 45.455 0.00 0.00 37.73 4.02
7306 7612 4.621991 GTGAATCTACACTGCATCCGTAT 58.378 43.478 0.00 0.00 37.73 3.06
7307 7613 4.445718 GTGAATCTACACTGCATCCGTATG 59.554 45.833 0.00 0.00 37.73 2.39
7308 7614 4.099419 TGAATCTACACTGCATCCGTATGT 59.901 41.667 0.00 0.00 35.38 2.29
7309 7615 5.300792 TGAATCTACACTGCATCCGTATGTA 59.699 40.000 0.00 0.00 35.38 2.29
7316 7622 4.830826 CTGCATCCGTATGTAGTAGTCA 57.169 45.455 0.00 0.00 40.02 3.41
7317 7623 5.378292 CTGCATCCGTATGTAGTAGTCAT 57.622 43.478 0.00 0.00 40.02 3.06
7318 7624 5.773575 CTGCATCCGTATGTAGTAGTCATT 58.226 41.667 0.00 0.00 40.02 2.57
7319 7625 6.156748 TGCATCCGTATGTAGTAGTCATTT 57.843 37.500 0.00 0.00 35.38 2.32
7320 7626 5.983118 TGCATCCGTATGTAGTAGTCATTTG 59.017 40.000 0.00 0.00 35.38 2.32
7321 7627 6.183360 TGCATCCGTATGTAGTAGTCATTTGA 60.183 38.462 0.00 0.00 35.38 2.69
7322 7628 6.700081 GCATCCGTATGTAGTAGTCATTTGAA 59.300 38.462 0.00 0.00 35.38 2.69
7323 7629 7.223971 GCATCCGTATGTAGTAGTCATTTGAAA 59.776 37.037 0.00 0.00 35.38 2.69
7324 7630 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
7325 7631 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
7326 7632 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
7327 7633 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
7328 7634 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
7352 7658 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
7353 7659 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
7354 7660 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
7355 7661 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
7356 7662 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
7357 7663 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
7362 7668 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
7409 7715 6.770785 GGGAACATCTATATACAACTGCCAAA 59.229 38.462 0.00 0.00 0.00 3.28
7420 7726 3.706086 ACAACTGCCAAATGAAAGGTCTT 59.294 39.130 0.00 0.00 0.00 3.01
7426 7734 3.758554 GCCAAATGAAAGGTCTTGAGCTA 59.241 43.478 2.63 0.00 0.00 3.32
7495 7804 2.637025 CGACACAAACTTGCGGGG 59.363 61.111 0.00 0.00 0.00 5.73
7500 7809 0.457851 CACAAACTTGCGGGGAAACA 59.542 50.000 0.00 0.00 0.00 2.83
7510 7819 2.224670 TGCGGGGAAACAAGACTGTTAT 60.225 45.455 0.00 0.00 45.25 1.89
7512 7821 3.119955 GCGGGGAAACAAGACTGTTATTC 60.120 47.826 0.00 0.00 45.25 1.75
7529 7838 3.367743 CACATGCAGCAAGGCGGT 61.368 61.111 0.00 0.00 36.28 5.68
7755 8064 4.414677 CATCTATCTGGATCACCTGGAGA 58.585 47.826 0.00 0.00 36.08 3.71
7792 8106 3.033184 CTGGTCGGTAATAACAGGGGTA 58.967 50.000 0.00 0.00 0.00 3.69
7797 8111 6.010219 GGTCGGTAATAACAGGGGTACTATA 58.990 44.000 0.00 0.00 0.00 1.31
7799 8113 7.179160 GGTCGGTAATAACAGGGGTACTATATT 59.821 40.741 0.00 0.00 0.00 1.28
7886 8200 1.400242 GCAGCGACCATGTCTTGAAAC 60.400 52.381 0.00 0.00 0.00 2.78
7934 8248 0.108138 CTACCTGCTTCCTTGACGGG 60.108 60.000 0.00 0.00 35.85 5.28
7938 8252 0.951040 CTGCTTCCTTGACGGGACAC 60.951 60.000 0.00 0.00 34.78 3.67
8014 8328 1.272490 TCTAGTCTCAAACACCGCCTG 59.728 52.381 0.00 0.00 0.00 4.85
8033 8347 3.465742 TGCAAAGCAGCAAAACCATAA 57.534 38.095 0.00 0.00 42.46 1.90
8042 8356 3.369756 CAGCAAAACCATAAGCAAGCATG 59.630 43.478 0.00 0.00 0.00 4.06
8043 8357 3.007182 AGCAAAACCATAAGCAAGCATGT 59.993 39.130 0.00 0.00 0.00 3.21
8044 8358 3.368843 GCAAAACCATAAGCAAGCATGTC 59.631 43.478 0.00 0.00 0.00 3.06
8045 8359 3.492421 AAACCATAAGCAAGCATGTCG 57.508 42.857 0.00 0.00 0.00 4.35
8046 8360 2.401583 ACCATAAGCAAGCATGTCGA 57.598 45.000 0.00 0.00 0.00 4.20
8047 8361 2.923121 ACCATAAGCAAGCATGTCGAT 58.077 42.857 0.00 0.00 0.00 3.59
8048 8362 2.615447 ACCATAAGCAAGCATGTCGATG 59.385 45.455 0.00 0.00 0.00 3.84
8049 8363 2.615447 CCATAAGCAAGCATGTCGATGT 59.385 45.455 0.00 0.00 31.50 3.06
8050 8364 3.065786 CCATAAGCAAGCATGTCGATGTT 59.934 43.478 0.00 0.00 31.50 2.71
8051 8365 4.273235 CCATAAGCAAGCATGTCGATGTTA 59.727 41.667 0.00 0.00 31.50 2.41
8052 8366 3.747099 AAGCAAGCATGTCGATGTTAC 57.253 42.857 0.00 0.00 31.50 2.50
8053 8367 2.977914 AGCAAGCATGTCGATGTTACT 58.022 42.857 0.00 0.00 31.50 2.24
8054 8368 2.932614 AGCAAGCATGTCGATGTTACTC 59.067 45.455 0.00 0.00 31.50 2.59
8055 8369 2.672874 GCAAGCATGTCGATGTTACTCA 59.327 45.455 0.00 0.00 31.50 3.41
8056 8370 3.310774 GCAAGCATGTCGATGTTACTCAT 59.689 43.478 0.00 0.00 39.77 2.90
8057 8371 4.551603 GCAAGCATGTCGATGTTACTCATC 60.552 45.833 0.00 0.00 46.68 2.92
8081 8395 7.894708 TCATTTCTGATTTAAATGACTTGGCA 58.105 30.769 5.17 0.00 44.39 4.92
8082 8396 8.366401 TCATTTCTGATTTAAATGACTTGGCAA 58.634 29.630 5.17 0.00 44.39 4.52
8083 8397 9.158233 CATTTCTGATTTAAATGACTTGGCAAT 57.842 29.630 5.17 0.00 43.79 3.56
8086 8400 9.638239 TTCTGATTTAAATGACTTGGCAATAAC 57.362 29.630 5.17 0.00 0.00 1.89
8087 8401 8.801299 TCTGATTTAAATGACTTGGCAATAACA 58.199 29.630 5.17 1.94 0.00 2.41
8088 8402 9.421806 CTGATTTAAATGACTTGGCAATAACAA 57.578 29.630 5.17 0.00 0.00 2.83
8089 8403 9.770097 TGATTTAAATGACTTGGCAATAACAAA 57.230 25.926 5.17 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 67 9.620259 ATCAGATCTATACTAAGTATGCATCGA 57.380 33.333 0.19 0.00 30.19 3.59
101 104 6.323996 CCATGAGTACTCATCCAAAGTACCTA 59.676 42.308 31.17 3.94 46.57 3.08
102 105 5.129485 CCATGAGTACTCATCCAAAGTACCT 59.871 44.000 31.17 8.25 46.57 3.08
103 106 5.104900 ACCATGAGTACTCATCCAAAGTACC 60.105 44.000 31.17 0.00 46.57 3.34
189 192 1.153107 CATTGGCGGGATCAGCTGA 60.153 57.895 20.79 20.79 34.52 4.26
261 264 2.627217 CCTGGGAGCCTCCTAACTACTT 60.627 54.545 11.29 0.00 36.57 2.24
290 293 7.394016 TGATAACTAGATCAAAAAGGCACAGA 58.606 34.615 0.00 0.00 32.84 3.41
302 305 9.645059 GCTAGCATAACAATGATAACTAGATCA 57.355 33.333 10.63 0.00 40.08 2.92
581 587 1.548357 AAGGGAGAGCAGTGCGACAT 61.548 55.000 10.00 0.00 0.00 3.06
597 605 2.103941 GGGAGAGAAGCCATACTCAAGG 59.896 54.545 0.00 0.00 35.83 3.61
660 668 1.512694 GTAACCCTACCACGACCCG 59.487 63.158 0.00 0.00 0.00 5.28
683 691 4.637534 CGAGACATTTGGTTGGATCAGATT 59.362 41.667 0.00 0.00 0.00 2.40
747 756 4.992511 TCGCCGTTGTTTCCCCGG 62.993 66.667 0.00 0.00 44.46 5.73
814 823 5.240183 GCATATCTCAAGGCTTTATTGCTCA 59.760 40.000 0.00 0.00 0.00 4.26
862 871 6.381481 TGTTCATGGATAGCTTGCATTTAG 57.619 37.500 0.00 0.00 33.53 1.85
866 875 3.635373 CCTTGTTCATGGATAGCTTGCAT 59.365 43.478 0.00 0.00 36.74 3.96
873 882 3.824133 TCATGCCCTTGTTCATGGATAG 58.176 45.455 6.34 0.00 40.20 2.08
903 912 5.817816 CACCGTATGCTATTTTCCTTCTCTT 59.182 40.000 0.00 0.00 0.00 2.85
984 994 2.721859 CTGCGGATCATCGGTCGA 59.278 61.111 0.00 0.00 0.00 4.20
988 998 2.356793 GAGGCTGCGGATCATCGG 60.357 66.667 0.00 0.00 0.00 4.18
1014 1024 0.462789 AGTTATAGAACACGGGGGCG 59.537 55.000 2.62 0.00 38.10 6.13
1248 1259 0.748367 GGAGAAACCGGCCCTGATTC 60.748 60.000 0.00 0.00 0.00 2.52
1274 1292 2.044352 CCACCCCGAACCATTCCC 60.044 66.667 0.00 0.00 0.00 3.97
1285 1303 2.614013 ACCTCCACATCCCACCCC 60.614 66.667 0.00 0.00 0.00 4.95
1289 1307 2.300967 GCCAGACCTCCACATCCCA 61.301 63.158 0.00 0.00 0.00 4.37
1291 1309 2.187946 CGCCAGACCTCCACATCC 59.812 66.667 0.00 0.00 0.00 3.51
1304 1324 4.750695 TTCCCTGATCCCCCGCCA 62.751 66.667 0.00 0.00 0.00 5.69
1384 1404 1.758936 ATCGAACCCCGGGAAAAATC 58.241 50.000 26.32 11.33 39.14 2.17
1418 1438 4.739716 ACAAAGAACAAAATGCTAACTGCG 59.260 37.500 0.00 0.00 46.63 5.18
1423 1443 9.598517 AGATTGAAACAAAGAACAAAATGCTAA 57.401 25.926 0.00 0.00 0.00 3.09
1444 1464 6.109359 ACCCAAATCTAGTCGAGAAAGATTG 58.891 40.000 14.32 10.02 39.34 2.67
1485 1505 3.053395 ACCCATACCATTCATTCACAGCT 60.053 43.478 0.00 0.00 0.00 4.24
1619 1639 7.623999 ATCAGACCCTCACTATGATTACAAT 57.376 36.000 0.00 0.00 0.00 2.71
1665 1685 7.203255 ACTGGCACTTCTCTGTATTTTTAAC 57.797 36.000 0.00 0.00 0.00 2.01
2131 2159 8.239314 ACAACAATATGAACTTCATGATGACAC 58.761 33.333 15.03 6.56 37.70 3.67
2139 2167 6.886459 ACCAGCTACAACAATATGAACTTCAT 59.114 34.615 9.26 9.26 40.72 2.57
2185 2213 9.499479 GTGATTTATTATGATCTCCATGTGAGT 57.501 33.333 9.98 0.67 42.12 3.41
2471 2499 4.876107 GCTTATTTCTCCTCGATTGACCAA 59.124 41.667 0.00 0.00 0.00 3.67
2472 2500 4.081142 TGCTTATTTCTCCTCGATTGACCA 60.081 41.667 0.00 0.00 0.00 4.02
2473 2501 4.442706 TGCTTATTTCTCCTCGATTGACC 58.557 43.478 0.00 0.00 0.00 4.02
2474 2502 4.025313 GCTGCTTATTTCTCCTCGATTGAC 60.025 45.833 0.00 0.00 0.00 3.18
2475 2503 4.122776 GCTGCTTATTTCTCCTCGATTGA 58.877 43.478 0.00 0.00 0.00 2.57
2476 2504 4.025061 CAGCTGCTTATTTCTCCTCGATTG 60.025 45.833 0.00 0.00 0.00 2.67
2477 2505 4.125703 CAGCTGCTTATTTCTCCTCGATT 58.874 43.478 0.00 0.00 0.00 3.34
2478 2506 3.726607 CAGCTGCTTATTTCTCCTCGAT 58.273 45.455 0.00 0.00 0.00 3.59
2479 2507 2.739932 GCAGCTGCTTATTTCTCCTCGA 60.740 50.000 31.33 0.00 38.21 4.04
2480 2508 1.596727 GCAGCTGCTTATTTCTCCTCG 59.403 52.381 31.33 0.00 38.21 4.63
2487 2515 9.075712 TACAAAAGTGTCAGCAGCTGCTTATTT 62.076 37.037 38.08 26.77 43.38 1.40
2488 2516 7.684111 TACAAAAGTGTCAGCAGCTGCTTATT 61.684 38.462 38.08 23.13 43.38 1.40
2489 2517 6.261463 TACAAAAGTGTCAGCAGCTGCTTAT 61.261 40.000 38.08 16.47 43.38 1.73
2490 2518 4.981845 TACAAAAGTGTCAGCAGCTGCTTA 60.982 41.667 38.08 28.39 43.38 3.09
2491 2519 4.243039 TACAAAAGTGTCAGCAGCTGCTT 61.243 43.478 38.08 21.29 43.38 3.91
2492 2520 2.746142 TACAAAAGTGTCAGCAGCTGCT 60.746 45.455 35.32 35.32 45.27 4.24
2493 2521 0.383231 ACAAAAGTGTCAGCAGCTGC 59.617 50.000 31.53 31.53 35.34 5.25
2494 2522 2.225019 CCTACAAAAGTGTCAGCAGCTG 59.775 50.000 17.10 17.10 39.30 4.24
2495 2523 2.158755 ACCTACAAAAGTGTCAGCAGCT 60.159 45.455 0.00 0.00 39.30 4.24
2496 2524 2.031682 CACCTACAAAAGTGTCAGCAGC 60.032 50.000 0.00 0.00 39.30 5.25
2497 2525 2.549754 CCACCTACAAAAGTGTCAGCAG 59.450 50.000 0.00 0.00 39.30 4.24
2498 2526 2.571212 CCACCTACAAAAGTGTCAGCA 58.429 47.619 0.00 0.00 39.30 4.41
2499 2527 1.880027 CCCACCTACAAAAGTGTCAGC 59.120 52.381 0.00 0.00 39.30 4.26
2500 2528 1.880027 GCCCACCTACAAAAGTGTCAG 59.120 52.381 0.00 0.00 39.30 3.51
2501 2529 1.477923 GGCCCACCTACAAAAGTGTCA 60.478 52.381 0.00 0.00 39.30 3.58
2502 2530 1.244816 GGCCCACCTACAAAAGTGTC 58.755 55.000 0.00 0.00 39.30 3.67
2663 2691 4.380531 TGACAGTTTTGTGCTTCTCTAGG 58.619 43.478 0.00 0.00 37.76 3.02
2680 2708 2.943033 ACAAGAAGTCCGGTTTTGACAG 59.057 45.455 0.00 0.00 35.15 3.51
2690 2718 4.681942 CAGAGAACTACAACAAGAAGTCCG 59.318 45.833 0.00 0.00 0.00 4.79
2890 2918 1.070134 ACCAGTAGCTCGAACTTGCAA 59.930 47.619 0.00 0.00 0.00 4.08
2963 2991 7.928908 CACAAGCACATGTGTTTAAATACTT 57.071 32.000 24.94 14.68 44.46 2.24
3091 3127 1.480545 ACCATACAGTGCATCGTGCTA 59.519 47.619 10.54 0.00 45.31 3.49
3351 3387 9.722056 CAGAACCTGTATAGAAATAAATTGTGC 57.278 33.333 0.00 0.00 0.00 4.57
3482 3518 3.681593 TCCAATTCCACCAATGCAAAG 57.318 42.857 0.00 0.00 0.00 2.77
3619 3655 7.097834 ACAGTTACTAACCTGTCATAGAAAGC 58.902 38.462 0.00 0.00 0.00 3.51
3639 3675 3.850173 ACCCCCTGTATATGTTGACAGTT 59.150 43.478 3.33 0.00 41.28 3.16
3656 3692 2.422597 GCAAAGCACAATTTTACCCCC 58.577 47.619 0.00 0.00 0.00 5.40
3726 3762 4.494091 ACATAGCTTCACTGCCTGTAAT 57.506 40.909 0.00 0.00 30.79 1.89
3880 3916 3.279116 CACACAGCACCACACCCG 61.279 66.667 0.00 0.00 0.00 5.28
4064 4100 6.103330 ACAATTTGGTACACAACAAAGAACC 58.897 36.000 0.78 0.00 39.29 3.62
4379 4418 3.880490 TGGAGTCATAAAAACTTGTGCGT 59.120 39.130 0.00 0.00 0.00 5.24
4434 4473 2.245438 GAAGGAGCGAAGGTGAGGGG 62.245 65.000 0.00 0.00 39.88 4.79
4444 4483 0.039764 TTGGAGAGAGGAAGGAGCGA 59.960 55.000 0.00 0.00 0.00 4.93
4613 4652 3.745975 TCGATGTGTGAACAATCTTCACC 59.254 43.478 10.02 3.69 46.01 4.02
4769 4808 9.322773 CTATGTGCAAGAAAGATCTTAATCTCA 57.677 33.333 8.75 3.91 44.11 3.27
4964 5003 6.751888 CGGTTTCAATGGATCCAAAGAATAAC 59.248 38.462 24.51 20.81 0.00 1.89
4973 5012 2.577606 ACACGGTTTCAATGGATCCA 57.422 45.000 18.88 18.88 0.00 3.41
5020 5059 2.592308 GCACCCATCCTCCCTGAC 59.408 66.667 0.00 0.00 0.00 3.51
5942 5981 3.446968 ACCACCAGGCTACACATAGTAA 58.553 45.455 0.00 0.00 39.06 2.24
5962 6001 3.123050 GCCCACATTGTGAACAAAAGAC 58.877 45.455 18.33 0.00 39.55 3.01
6041 6080 4.634012 TCCAAATGGTATCCGAATAGGG 57.366 45.455 0.00 0.00 37.23 3.53
6046 6085 4.764823 GGCATTATCCAAATGGTATCCGAA 59.235 41.667 0.00 0.00 36.34 4.30
6049 6088 6.012745 AGAAGGCATTATCCAAATGGTATCC 58.987 40.000 0.00 0.00 36.34 2.59
6117 6342 5.405935 AAAGGATGTTTTATGACCCTTGC 57.594 39.130 0.00 0.00 34.57 4.01
6155 6417 4.089361 TGACAGATGAAACTAGCAGAGGA 58.911 43.478 0.00 0.00 0.00 3.71
6160 6422 6.767902 GGGAATAATGACAGATGAAACTAGCA 59.232 38.462 0.00 0.00 0.00 3.49
6202 6464 8.284693 AGTTTACGTACAATTTATGTCCAACAC 58.715 33.333 0.00 0.00 42.70 3.32
6204 6466 9.667989 AAAGTTTACGTACAATTTATGTCCAAC 57.332 29.630 5.44 0.00 42.70 3.77
6254 6517 5.165961 TCCAGACTACCTTTTTCATCCAG 57.834 43.478 0.00 0.00 0.00 3.86
6304 6568 6.236017 TGTATAAAGCAGGTGACTTTTTCG 57.764 37.500 0.00 0.00 40.21 3.46
6338 6620 8.497745 ACAGGAATATTACTTCTTCACCATGAT 58.502 33.333 0.00 0.00 0.00 2.45
6360 6642 2.223805 GCTTTTTGGACAGGAACACAGG 60.224 50.000 0.00 0.00 0.00 4.00
6462 6752 6.433404 GCACCTAGCATAGTATACCTACAGAA 59.567 42.308 0.00 0.00 44.79 3.02
6582 6874 2.496070 CTGACTACGAAATCAGGGGTCA 59.504 50.000 0.00 0.00 38.97 4.02
6586 6878 4.655762 TCATCTGACTACGAAATCAGGG 57.344 45.455 12.38 7.38 42.25 4.45
6618 6910 6.752168 ACTTTCAAAAGCAACAGCAATATCT 58.248 32.000 2.43 0.00 39.63 1.98
6658 6950 9.357652 CAATTCAGTTCAAGAAAGAAGAAACAA 57.642 29.630 5.56 0.00 0.00 2.83
6689 6981 5.474876 GGAAAATGTTTCTGATCAGACACCT 59.525 40.000 29.99 21.67 37.33 4.00
6690 6982 5.474876 AGGAAAATGTTTCTGATCAGACACC 59.525 40.000 29.99 20.15 37.33 4.16
6691 6983 6.348868 GGAGGAAAATGTTTCTGATCAGACAC 60.349 42.308 27.75 27.75 38.32 3.67
6700 6992 4.588528 TGGAAAGGGAGGAAAATGTTTCTG 59.411 41.667 1.11 0.00 0.00 3.02
6706 6998 2.232208 GCACTGGAAAGGGAGGAAAATG 59.768 50.000 0.00 0.00 0.00 2.32
6728 7021 1.098050 GCAATAGGGCTTCACAGGTG 58.902 55.000 0.00 0.00 0.00 4.00
6757 7050 2.419324 GAGATTGCAGCTTGAACTCCAG 59.581 50.000 0.00 0.00 0.00 3.86
6758 7051 2.039480 AGAGATTGCAGCTTGAACTCCA 59.961 45.455 0.00 0.00 0.00 3.86
7007 7311 6.584471 TTATACAGATTAAGGGGGAAAGCA 57.416 37.500 0.00 0.00 0.00 3.91
7039 7343 3.118738 CGCAGATAGGTTACAGGGAAAGT 60.119 47.826 0.00 0.00 0.00 2.66
7154 7459 0.825010 ACAGGGAGGCTTGCTTTGTG 60.825 55.000 0.00 0.00 0.00 3.33
7188 7494 0.816373 ACTTGTGTTGTGTGCATGCA 59.184 45.000 18.46 18.46 0.00 3.96
7200 7506 1.692519 GGGAGTAGGTCACACTTGTGT 59.307 52.381 9.16 0.00 45.76 3.72
7201 7507 1.971357 AGGGAGTAGGTCACACTTGTG 59.029 52.381 2.75 2.75 46.91 3.33
7202 7508 2.249139 GAGGGAGTAGGTCACACTTGT 58.751 52.381 0.00 0.00 0.00 3.16
7203 7509 1.550976 GGAGGGAGTAGGTCACACTTG 59.449 57.143 0.00 0.00 0.00 3.16
7204 7510 1.891450 CGGAGGGAGTAGGTCACACTT 60.891 57.143 0.00 0.00 0.00 3.16
7205 7511 0.323542 CGGAGGGAGTAGGTCACACT 60.324 60.000 0.00 0.00 0.00 3.55
7206 7512 0.611340 ACGGAGGGAGTAGGTCACAC 60.611 60.000 0.00 0.00 0.00 3.82
7207 7513 0.113776 AACGGAGGGAGTAGGTCACA 59.886 55.000 0.00 0.00 0.00 3.58
7208 7514 0.816373 GAACGGAGGGAGTAGGTCAC 59.184 60.000 0.00 0.00 0.00 3.67
7209 7515 0.324091 GGAACGGAGGGAGTAGGTCA 60.324 60.000 0.00 0.00 0.00 4.02
7210 7516 0.033306 AGGAACGGAGGGAGTAGGTC 60.033 60.000 0.00 0.00 0.00 3.85
7212 7518 2.449137 TTAGGAACGGAGGGAGTAGG 57.551 55.000 0.00 0.00 0.00 3.18
7213 7519 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
7214 7520 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
7215 7521 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
7216 7522 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
7217 7523 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
7218 7524 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
7219 7525 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
7220 7526 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
7221 7527 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
7222 7528 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
7223 7529 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
7224 7530 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
7225 7531 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
7226 7532 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
7227 7533 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
7229 7535 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
7230 7536 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
7231 7537 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
7232 7538 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
7233 7539 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
7234 7540 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
7235 7541 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
7236 7542 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
7237 7543 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
7238 7544 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
7239 7545 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
7240 7546 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
7241 7547 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
7242 7548 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
7243 7549 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
7244 7550 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
7245 7551 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
7246 7552 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
7247 7553 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
7248 7554 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
7249 7555 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
7250 7556 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
7251 7557 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
7252 7558 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
7253 7559 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
7254 7560 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
7255 7561 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
7256 7562 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
7257 7563 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
7258 7564 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
7259 7565 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
7260 7566 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
7261 7567 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
7262 7568 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
7263 7569 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
7264 7570 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
7265 7571 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
7266 7572 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
7267 7573 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
7268 7574 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
7269 7575 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
7270 7576 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
7271 7577 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
7272 7578 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
7273 7579 6.541086 CAGTGTAGATTCACTCATTTTGCTC 58.459 40.000 0.00 0.00 45.37 4.26
7274 7580 5.106396 GCAGTGTAGATTCACTCATTTTGCT 60.106 40.000 0.00 0.00 45.37 3.91
7275 7581 5.091431 GCAGTGTAGATTCACTCATTTTGC 58.909 41.667 0.00 0.00 45.37 3.68
7276 7582 6.245115 TGCAGTGTAGATTCACTCATTTTG 57.755 37.500 0.00 0.00 45.37 2.44
7277 7583 6.094603 GGATGCAGTGTAGATTCACTCATTTT 59.905 38.462 0.00 0.00 45.37 1.82
7278 7584 5.587844 GGATGCAGTGTAGATTCACTCATTT 59.412 40.000 0.00 0.00 45.37 2.32
7279 7585 5.121811 GGATGCAGTGTAGATTCACTCATT 58.878 41.667 0.00 0.00 45.37 2.57
7280 7586 4.701765 GGATGCAGTGTAGATTCACTCAT 58.298 43.478 0.00 0.00 45.37 2.90
7281 7587 3.429410 CGGATGCAGTGTAGATTCACTCA 60.429 47.826 0.00 0.00 45.37 3.41
7282 7588 3.119291 CGGATGCAGTGTAGATTCACTC 58.881 50.000 0.00 0.00 45.37 3.51
7283 7589 8.081105 ACATACGGATGCAGTGTAGATTCACT 62.081 42.308 7.78 0.00 41.31 3.41
7284 7590 2.893637 ACGGATGCAGTGTAGATTCAC 58.106 47.619 0.00 0.00 38.46 3.18
7285 7591 4.099419 ACATACGGATGCAGTGTAGATTCA 59.901 41.667 7.78 0.00 36.43 2.57
7286 7592 4.621991 ACATACGGATGCAGTGTAGATTC 58.378 43.478 7.78 0.00 36.43 2.52
7287 7593 4.672587 ACATACGGATGCAGTGTAGATT 57.327 40.909 7.78 0.00 36.43 2.40
7288 7594 4.827835 ACTACATACGGATGCAGTGTAGAT 59.172 41.667 12.92 0.00 42.90 1.98
7289 7595 4.204799 ACTACATACGGATGCAGTGTAGA 58.795 43.478 12.92 3.57 42.90 2.59
7290 7596 4.569761 ACTACATACGGATGCAGTGTAG 57.430 45.455 12.92 8.16 44.72 2.74
7291 7597 5.128205 ACTACTACATACGGATGCAGTGTA 58.872 41.667 21.72 11.68 39.56 2.90
7292 7598 3.952323 ACTACTACATACGGATGCAGTGT 59.048 43.478 21.72 14.69 39.56 3.55
7293 7599 4.036380 TGACTACTACATACGGATGCAGTG 59.964 45.833 21.72 14.14 39.56 3.66
7294 7600 4.204799 TGACTACTACATACGGATGCAGT 58.795 43.478 17.59 17.59 41.64 4.40
7295 7601 4.830826 TGACTACTACATACGGATGCAG 57.169 45.455 7.78 6.97 36.43 4.41
7296 7602 5.784578 AATGACTACTACATACGGATGCA 57.215 39.130 7.78 0.00 36.43 3.96
7297 7603 6.213677 TCAAATGACTACTACATACGGATGC 58.786 40.000 7.78 0.00 36.43 3.91
7298 7604 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
7299 7605 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
7300 7606 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
7301 7607 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
7302 7608 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
7326 7632 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
7327 7633 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
7328 7634 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
7329 7635 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
7330 7636 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
7331 7637 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
7332 7638 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
7333 7639 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
7334 7640 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
7335 7641 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
7336 7642 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
7337 7643 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
7338 7644 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
7339 7645 4.646492 TGTACTCCCTCCGTTCCTAAATAC 59.354 45.833 0.00 0.00 0.00 1.89
7340 7646 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
7341 7647 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
7342 7648 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
7343 7649 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
7344 7650 2.042162 ACTTGTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
7345 7651 1.203149 ACTTGTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
7346 7652 1.204231 GACTTGTACTCCCTCCGTTCC 59.796 57.143 0.00 0.00 0.00 3.62
7347 7653 2.169330 AGACTTGTACTCCCTCCGTTC 58.831 52.381 0.00 0.00 0.00 3.95
7348 7654 2.305858 AGACTTGTACTCCCTCCGTT 57.694 50.000 0.00 0.00 0.00 4.44
7349 7655 2.944991 GCTAGACTTGTACTCCCTCCGT 60.945 54.545 0.00 0.00 0.00 4.69
7350 7656 1.677052 GCTAGACTTGTACTCCCTCCG 59.323 57.143 0.00 0.00 0.00 4.63
7351 7657 2.033372 GGCTAGACTTGTACTCCCTCC 58.967 57.143 0.00 0.00 0.00 4.30
7352 7658 3.021177 AGGCTAGACTTGTACTCCCTC 57.979 52.381 0.00 0.00 0.00 4.30
7353 7659 3.100671 CAAGGCTAGACTTGTACTCCCT 58.899 50.000 27.51 1.29 42.18 4.20
7354 7660 3.528597 CAAGGCTAGACTTGTACTCCC 57.471 52.381 27.51 0.00 42.18 4.30
7362 7668 6.214819 TCCCAGTAAAATACAAGGCTAGACTT 59.785 38.462 4.51 4.51 0.00 3.01
7409 7715 4.160439 TCGACATAGCTCAAGACCTTTCAT 59.840 41.667 0.00 0.00 0.00 2.57
7420 7726 2.627699 TGTGCCATATCGACATAGCTCA 59.372 45.455 0.00 0.00 0.00 4.26
7426 7734 0.179086 TGCGTGTGCCATATCGACAT 60.179 50.000 0.00 0.00 41.78 3.06
7443 7751 3.873361 TGCAGAGCTTATGTAGTTCATGC 59.127 43.478 0.00 0.00 38.01 4.06
7495 7804 6.437928 TGCATGTGAATAACAGTCTTGTTTC 58.562 36.000 0.00 0.00 45.01 2.78
7500 7809 4.074259 TGCTGCATGTGAATAACAGTCTT 58.926 39.130 0.00 0.00 43.64 3.01
7510 7819 2.628696 CCGCCTTGCTGCATGTGAA 61.629 57.895 1.84 0.00 0.00 3.18
7512 7821 3.367743 ACCGCCTTGCTGCATGTG 61.368 61.111 1.84 4.70 0.00 3.21
7529 7838 1.881973 GTTCAGCTGTTTGATGCTCCA 59.118 47.619 14.67 0.00 37.44 3.86
7589 7898 2.997315 CGGTGACCTCTCCAGGCA 60.997 66.667 0.00 0.00 45.05 4.75
7593 7902 2.037367 CCTCCGGTGACCTCTCCA 59.963 66.667 4.76 0.00 0.00 3.86
7692 8001 2.097825 GCATTCTGGGAGAGCAACAAT 58.902 47.619 0.00 0.00 0.00 2.71
7755 8064 5.126067 CCGACCAGGATACATCTTTCATTT 58.874 41.667 0.00 0.00 45.00 2.32
7797 8111 9.905713 ACTAAGTGGTTGTATCATATGTTCAAT 57.094 29.630 1.90 0.00 0.00 2.57
7799 8113 9.378551 GAACTAAGTGGTTGTATCATATGTTCA 57.621 33.333 1.90 0.00 0.00 3.18
7886 8200 3.137176 TGGGGAATAAAGCATCTCCAGAG 59.863 47.826 0.00 0.00 41.30 3.35
8014 8328 2.158254 GCTTATGGTTTTGCTGCTTTGC 59.842 45.455 0.00 0.00 0.00 3.68
8027 8341 2.401583 TCGACATGCTTGCTTATGGT 57.598 45.000 0.00 0.00 0.00 3.55
8032 8346 3.338249 AGTAACATCGACATGCTTGCTT 58.662 40.909 0.00 0.00 32.57 3.91
8033 8347 2.932614 GAGTAACATCGACATGCTTGCT 59.067 45.455 0.00 0.00 32.57 3.91
8056 8370 7.894708 TGCCAAGTCATTTAAATCAGAAATGA 58.105 30.769 6.69 6.69 46.16 2.57
8057 8371 8.537049 TTGCCAAGTCATTTAAATCAGAAATG 57.463 30.769 0.00 2.39 42.94 2.32
8060 8374 9.638239 GTTATTGCCAAGTCATTTAAATCAGAA 57.362 29.630 0.00 0.00 0.00 3.02
8061 8375 8.801299 TGTTATTGCCAAGTCATTTAAATCAGA 58.199 29.630 0.00 0.00 0.00 3.27
8062 8376 8.984891 TGTTATTGCCAAGTCATTTAAATCAG 57.015 30.769 0.00 0.00 0.00 2.90
8063 8377 9.770097 TTTGTTATTGCCAAGTCATTTAAATCA 57.230 25.926 0.00 0.00 0.00 2.57



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.