Multiple sequence alignment - TraesCS3B01G497900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G497900 chr3B 100.000 3202 0 0 1 3202 741505142 741501941 0.000000e+00 5914.0
1 TraesCS3B01G497900 chr3B 90.541 74 7 0 3129 3202 762509341 762509268 7.310000e-17 99.0
2 TraesCS3B01G497900 chr3D 95.684 2456 87 14 430 2875 558725952 558723506 0.000000e+00 3930.0
3 TraesCS3B01G497900 chr3D 91.264 435 26 6 1 428 607463292 607462863 1.660000e-162 582.0
4 TraesCS3B01G497900 chr3D 90.345 435 29 8 1 428 83825136 83825564 2.790000e-155 558.0
5 TraesCS3B01G497900 chr3D 76.866 402 47 10 1212 1604 558563388 558563024 5.450000e-43 185.0
6 TraesCS3B01G497900 chr3A 93.745 2334 109 21 430 2749 695044123 695041813 0.000000e+00 3467.0
7 TraesCS3B01G497900 chr3A 89.655 435 34 7 1 428 30144010 30144440 7.810000e-151 544.0
8 TraesCS3B01G497900 chr3A 82.707 399 28 9 2743 3119 695027998 695027619 1.850000e-82 316.0
9 TraesCS3B01G497900 chr3A 76.847 406 48 12 1210 1604 694970420 694970050 1.520000e-43 187.0
10 TraesCS3B01G497900 chr3A 87.179 78 9 1 3126 3202 65438527 65438604 1.580000e-13 87.9
11 TraesCS3B01G497900 chr5D 91.034 435 25 9 1 428 535573093 535573520 2.770000e-160 575.0
12 TraesCS3B01G497900 chr5D 90.805 435 26 9 1 428 108353295 108353722 1.290000e-158 569.0
13 TraesCS3B01G497900 chr5D 90.183 438 30 7 1 428 389930099 389930533 2.790000e-155 558.0
14 TraesCS3B01G497900 chr5D 90.160 437 29 10 1 428 466690789 466691220 1.000000e-154 556.0
15 TraesCS3B01G497900 chr5D 89.726 438 30 9 1 428 15078821 15078389 2.170000e-151 545.0
16 TraesCS3B01G497900 chr2D 90.783 434 29 7 1 428 43109316 43108888 1.290000e-158 569.0
17 TraesCS3B01G497900 chr5B 96.970 66 2 0 3137 3202 520109268 520109203 9.390000e-21 111.0
18 TraesCS3B01G497900 chr5B 92.308 65 5 0 3136 3200 103343635 103343699 3.400000e-15 93.5
19 TraesCS3B01G497900 chr5B 89.855 69 7 0 3134 3202 366499694 366499762 4.400000e-14 89.8
20 TraesCS3B01G497900 chr4B 92.105 76 5 1 3128 3202 37148652 37148577 4.370000e-19 106.0
21 TraesCS3B01G497900 chr4A 96.610 59 2 0 3144 3202 39586732 39586674 7.310000e-17 99.0
22 TraesCS3B01G497900 chr6B 91.176 68 6 0 3134 3201 173653857 173653790 3.400000e-15 93.5
23 TraesCS3B01G497900 chr1A 82.828 99 15 2 3019 3116 300503397 300503494 1.580000e-13 87.9
24 TraesCS3B01G497900 chr6A 88.571 70 8 0 3133 3202 39521093 39521024 5.690000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G497900 chr3B 741501941 741505142 3201 True 5914 5914 100.000 1 3202 1 chr3B.!!$R1 3201
1 TraesCS3B01G497900 chr3D 558723506 558725952 2446 True 3930 3930 95.684 430 2875 1 chr3D.!!$R2 2445
2 TraesCS3B01G497900 chr3A 695041813 695044123 2310 True 3467 3467 93.745 430 2749 1 chr3A.!!$R3 2319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 837 0.034198 TTTCATGGTGTTCTCGCCGA 59.966 50.0 0.0 0.0 46.3 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2641 2656 0.244721 TGATCCTCGCAGCATATCCG 59.755 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.127533 GGCGTACAAGGGCAGCAG 61.128 66.667 0.00 0.00 0.00 4.24
43 44 3.127533 GCGTACAAGGGCAGCAGG 61.128 66.667 0.00 0.00 0.00 4.85
44 45 3.127533 CGTACAAGGGCAGCAGGC 61.128 66.667 0.00 0.00 43.74 4.85
45 46 3.127533 GTACAAGGGCAGCAGGCG 61.128 66.667 0.00 0.00 46.16 5.52
46 47 4.408821 TACAAGGGCAGCAGGCGG 62.409 66.667 0.00 0.00 46.16 6.13
68 69 4.637489 CAGGAGATCGGCCGCGAG 62.637 72.222 23.51 0.00 0.00 5.03
122 123 2.233355 CAAGCTGTTAATTGCACGACG 58.767 47.619 0.00 0.00 0.00 5.12
123 124 1.790755 AGCTGTTAATTGCACGACGA 58.209 45.000 0.00 0.00 0.00 4.20
124 125 2.346803 AGCTGTTAATTGCACGACGAT 58.653 42.857 0.00 0.00 0.00 3.73
125 126 3.517602 AGCTGTTAATTGCACGACGATA 58.482 40.909 0.00 0.00 0.00 2.92
126 127 3.306166 AGCTGTTAATTGCACGACGATAC 59.694 43.478 0.00 0.00 0.00 2.24
127 128 3.834302 CTGTTAATTGCACGACGATACG 58.166 45.455 0.00 0.00 39.31 3.06
128 129 2.599527 TGTTAATTGCACGACGATACGG 59.400 45.455 0.00 0.00 37.61 4.02
129 130 1.202203 TAATTGCACGACGATACGGC 58.798 50.000 0.00 0.00 37.61 5.68
130 131 1.426041 AATTGCACGACGATACGGCC 61.426 55.000 0.00 0.00 37.61 6.13
131 132 4.840288 TGCACGACGATACGGCCG 62.840 66.667 26.86 26.86 37.61 6.13
132 133 4.842091 GCACGACGATACGGCCGT 62.842 66.667 36.01 36.01 43.56 5.68
137 138 4.183686 ACGATACGGCCGTCCACG 62.184 66.667 38.01 34.87 34.97 4.94
148 149 4.595538 GTCCACGCCACGTCCACA 62.596 66.667 0.00 0.00 38.32 4.17
149 150 4.595538 TCCACGCCACGTCCACAC 62.596 66.667 0.00 0.00 38.32 3.82
159 160 4.747529 GTCCACACGTACGCCCCC 62.748 72.222 16.72 0.00 0.00 5.40
183 184 3.337301 GGTCAACGCCGACTTTTTAAA 57.663 42.857 0.00 0.00 36.12 1.52
184 185 3.693654 GGTCAACGCCGACTTTTTAAAA 58.306 40.909 0.00 0.00 36.12 1.52
185 186 4.292599 GGTCAACGCCGACTTTTTAAAAT 58.707 39.130 0.55 0.00 36.12 1.82
186 187 5.451039 GGTCAACGCCGACTTTTTAAAATA 58.549 37.500 0.55 0.00 36.12 1.40
187 188 5.914074 GGTCAACGCCGACTTTTTAAAATAA 59.086 36.000 0.55 0.00 36.12 1.40
188 189 6.417339 GGTCAACGCCGACTTTTTAAAATAAA 59.583 34.615 0.55 0.00 36.12 1.40
189 190 7.043524 GGTCAACGCCGACTTTTTAAAATAAAA 60.044 33.333 0.55 0.00 36.12 1.52
190 191 7.784308 GTCAACGCCGACTTTTTAAAATAAAAC 59.216 33.333 0.55 0.00 32.92 2.43
191 192 7.487189 TCAACGCCGACTTTTTAAAATAAAACA 59.513 29.630 0.55 0.00 0.00 2.83
192 193 7.152290 ACGCCGACTTTTTAAAATAAAACAC 57.848 32.000 0.55 0.00 0.00 3.32
193 194 6.075467 ACGCCGACTTTTTAAAATAAAACACG 60.075 34.615 0.55 4.22 0.00 4.49
194 195 6.060150 GCCGACTTTTTAAAATAAAACACGC 58.940 36.000 0.55 0.00 0.00 5.34
195 196 6.574245 CCGACTTTTTAAAATAAAACACGCC 58.426 36.000 0.55 0.00 0.00 5.68
196 197 6.345961 CCGACTTTTTAAAATAAAACACGCCC 60.346 38.462 0.55 0.00 0.00 6.13
197 198 6.418523 CGACTTTTTAAAATAAAACACGCCCT 59.581 34.615 0.55 0.00 0.00 5.19
198 199 7.471657 ACTTTTTAAAATAAAACACGCCCTG 57.528 32.000 0.55 0.00 0.00 4.45
199 200 5.908916 TTTTAAAATAAAACACGCCCTGC 57.091 34.783 0.00 0.00 0.00 4.85
200 201 4.585955 TTAAAATAAAACACGCCCTGCA 57.414 36.364 0.00 0.00 0.00 4.41
201 202 3.676291 AAAATAAAACACGCCCTGCAT 57.324 38.095 0.00 0.00 0.00 3.96
202 203 2.939460 AATAAAACACGCCCTGCATC 57.061 45.000 0.00 0.00 0.00 3.91
203 204 2.128771 ATAAAACACGCCCTGCATCT 57.871 45.000 0.00 0.00 0.00 2.90
204 205 1.164411 TAAAACACGCCCTGCATCTG 58.836 50.000 0.00 0.00 0.00 2.90
205 206 0.537143 AAAACACGCCCTGCATCTGA 60.537 50.000 0.00 0.00 0.00 3.27
206 207 1.237285 AAACACGCCCTGCATCTGAC 61.237 55.000 0.00 0.00 0.00 3.51
207 208 2.046988 CACGCCCTGCATCTGACA 60.047 61.111 0.00 0.00 0.00 3.58
208 209 1.450848 CACGCCCTGCATCTGACAT 60.451 57.895 0.00 0.00 0.00 3.06
209 210 0.179076 CACGCCCTGCATCTGACATA 60.179 55.000 0.00 0.00 0.00 2.29
210 211 0.179073 ACGCCCTGCATCTGACATAC 60.179 55.000 0.00 0.00 0.00 2.39
211 212 0.105593 CGCCCTGCATCTGACATACT 59.894 55.000 0.00 0.00 0.00 2.12
212 213 1.590932 GCCCTGCATCTGACATACTG 58.409 55.000 0.00 0.00 0.00 2.74
213 214 1.813092 GCCCTGCATCTGACATACTGG 60.813 57.143 0.00 0.00 0.00 4.00
214 215 1.202734 CCCTGCATCTGACATACTGGG 60.203 57.143 0.00 0.00 33.83 4.45
215 216 1.590932 CTGCATCTGACATACTGGGC 58.409 55.000 0.00 0.00 0.00 5.36
216 217 0.181114 TGCATCTGACATACTGGGCC 59.819 55.000 0.00 0.00 0.00 5.80
217 218 0.536006 GCATCTGACATACTGGGCCC 60.536 60.000 17.59 17.59 0.00 5.80
218 219 0.839277 CATCTGACATACTGGGCCCA 59.161 55.000 26.67 26.67 0.00 5.36
219 220 1.422781 CATCTGACATACTGGGCCCAT 59.577 52.381 28.82 18.13 0.00 4.00
220 221 0.839277 TCTGACATACTGGGCCCATG 59.161 55.000 28.82 23.87 0.00 3.66
221 222 0.179009 CTGACATACTGGGCCCATGG 60.179 60.000 28.82 18.21 0.00 3.66
222 223 0.623031 TGACATACTGGGCCCATGGA 60.623 55.000 28.82 17.16 0.00 3.41
223 224 0.773644 GACATACTGGGCCCATGGAT 59.226 55.000 28.82 18.78 0.00 3.41
224 225 0.479815 ACATACTGGGCCCATGGATG 59.520 55.000 30.29 30.29 0.00 3.51
225 226 0.896940 CATACTGGGCCCATGGATGC 60.897 60.000 28.82 9.12 0.00 3.91
226 227 1.070127 ATACTGGGCCCATGGATGCT 61.070 55.000 28.82 6.61 0.00 3.79
227 228 0.401250 TACTGGGCCCATGGATGCTA 60.401 55.000 28.82 5.62 0.00 3.49
228 229 1.288508 ACTGGGCCCATGGATGCTAA 61.289 55.000 28.82 0.00 0.00 3.09
229 230 0.825010 CTGGGCCCATGGATGCTAAC 60.825 60.000 28.82 4.81 0.00 2.34
230 231 1.288508 TGGGCCCATGGATGCTAACT 61.289 55.000 24.45 0.00 0.00 2.24
231 232 0.825010 GGGCCCATGGATGCTAACTG 60.825 60.000 19.95 0.00 0.00 3.16
232 233 1.458639 GGCCCATGGATGCTAACTGC 61.459 60.000 15.22 4.10 43.25 4.40
233 234 0.466922 GCCCATGGATGCTAACTGCT 60.467 55.000 15.22 0.00 43.37 4.24
234 235 2.025863 GCCCATGGATGCTAACTGCTT 61.026 52.381 15.22 0.00 43.37 3.91
235 236 1.679680 CCCATGGATGCTAACTGCTTG 59.320 52.381 15.22 0.00 43.37 4.01
236 237 1.679680 CCATGGATGCTAACTGCTTGG 59.320 52.381 5.56 0.00 43.37 3.61
237 238 1.066605 CATGGATGCTAACTGCTTGGC 59.933 52.381 0.00 0.00 43.37 4.52
238 239 0.329261 TGGATGCTAACTGCTTGGCT 59.671 50.000 0.00 0.00 43.37 4.75
239 240 1.020437 GGATGCTAACTGCTTGGCTC 58.980 55.000 0.00 0.00 43.37 4.70
240 241 0.654683 GATGCTAACTGCTTGGCTCG 59.345 55.000 0.00 0.00 43.37 5.03
241 242 1.372087 ATGCTAACTGCTTGGCTCGC 61.372 55.000 0.00 0.00 43.37 5.03
242 243 3.084579 CTAACTGCTTGGCTCGCG 58.915 61.111 0.00 0.00 0.00 5.87
243 244 1.738099 CTAACTGCTTGGCTCGCGT 60.738 57.895 5.77 0.00 0.00 6.01
244 245 1.687494 CTAACTGCTTGGCTCGCGTC 61.687 60.000 5.77 0.00 0.00 5.19
246 247 4.749310 CTGCTTGGCTCGCGTCCT 62.749 66.667 17.94 0.00 0.00 3.85
247 248 4.742201 TGCTTGGCTCGCGTCCTC 62.742 66.667 17.94 9.76 0.00 3.71
248 249 4.742201 GCTTGGCTCGCGTCCTCA 62.742 66.667 17.94 6.04 0.00 3.86
249 250 2.811317 CTTGGCTCGCGTCCTCAC 60.811 66.667 17.94 1.44 0.00 3.51
258 259 4.680237 CGTCCTCACGGCTGCCAA 62.680 66.667 20.29 2.19 42.73 4.52
259 260 2.743928 GTCCTCACGGCTGCCAAG 60.744 66.667 20.29 12.17 0.00 3.61
279 280 4.803426 GCTCGGCTCGTCCCACAG 62.803 72.222 0.00 0.00 0.00 3.66
280 281 4.803426 CTCGGCTCGTCCCACAGC 62.803 72.222 0.00 0.00 34.65 4.40
286 287 4.682334 TCGTCCCACAGCCCCGTA 62.682 66.667 0.00 0.00 0.00 4.02
287 288 3.467226 CGTCCCACAGCCCCGTAT 61.467 66.667 0.00 0.00 0.00 3.06
288 289 2.129146 CGTCCCACAGCCCCGTATA 61.129 63.158 0.00 0.00 0.00 1.47
289 290 1.444672 GTCCCACAGCCCCGTATAC 59.555 63.158 0.00 0.00 0.00 1.47
290 291 1.001888 TCCCACAGCCCCGTATACA 59.998 57.895 3.32 0.00 0.00 2.29
291 292 1.145377 CCCACAGCCCCGTATACAC 59.855 63.158 3.32 0.00 0.00 2.90
292 293 1.618876 CCCACAGCCCCGTATACACA 61.619 60.000 3.32 0.00 0.00 3.72
293 294 0.179084 CCACAGCCCCGTATACACAG 60.179 60.000 3.32 0.00 0.00 3.66
294 295 0.179084 CACAGCCCCGTATACACAGG 60.179 60.000 3.32 1.21 0.00 4.00
295 296 1.227556 CAGCCCCGTATACACAGGC 60.228 63.158 16.35 16.35 41.83 4.85
296 297 1.687840 AGCCCCGTATACACAGGCA 60.688 57.895 22.77 0.00 43.24 4.75
297 298 1.523032 GCCCCGTATACACAGGCAC 60.523 63.158 18.28 2.45 41.38 5.01
298 299 1.227147 CCCCGTATACACAGGCACG 60.227 63.158 3.32 0.00 0.00 5.34
299 300 1.881252 CCCGTATACACAGGCACGC 60.881 63.158 3.32 0.00 33.19 5.34
300 301 2.228241 CCGTATACACAGGCACGCG 61.228 63.158 3.53 3.53 33.19 6.01
301 302 2.228241 CGTATACACAGGCACGCGG 61.228 63.158 12.47 0.00 0.00 6.46
302 303 1.881252 GTATACACAGGCACGCGGG 60.881 63.158 12.47 7.92 0.00 6.13
303 304 3.083848 TATACACAGGCACGCGGGG 62.084 63.158 11.92 2.33 0.00 5.73
306 307 4.467084 CACAGGCACGCGGGGTAT 62.467 66.667 11.92 0.00 0.00 2.73
307 308 4.157120 ACAGGCACGCGGGGTATC 62.157 66.667 11.92 0.00 0.00 2.24
316 317 4.580551 CGGGGTATCGGCGTGGAC 62.581 72.222 6.85 3.30 0.00 4.02
317 318 4.580551 GGGGTATCGGCGTGGACG 62.581 72.222 6.85 0.00 43.27 4.79
357 358 5.459110 TTTTTACATAAGACGATCGTGCC 57.541 39.130 28.12 12.52 0.00 5.01
358 359 2.787601 TACATAAGACGATCGTGCCC 57.212 50.000 28.12 11.69 0.00 5.36
359 360 0.104304 ACATAAGACGATCGTGCCCC 59.896 55.000 28.12 11.29 0.00 5.80
360 361 0.389391 CATAAGACGATCGTGCCCCT 59.611 55.000 28.12 13.68 0.00 4.79
361 362 0.389391 ATAAGACGATCGTGCCCCTG 59.611 55.000 28.12 0.00 0.00 4.45
362 363 0.681887 TAAGACGATCGTGCCCCTGA 60.682 55.000 28.12 6.56 0.00 3.86
363 364 2.202756 GACGATCGTGCCCCTGAC 60.203 66.667 28.12 4.32 0.00 3.51
364 365 2.994995 ACGATCGTGCCCCTGACA 60.995 61.111 22.06 0.00 0.00 3.58
365 366 2.264480 CGATCGTGCCCCTGACAA 59.736 61.111 7.03 0.00 0.00 3.18
366 367 2.100631 CGATCGTGCCCCTGACAAC 61.101 63.158 7.03 0.00 0.00 3.32
367 368 2.047274 ATCGTGCCCCTGACAACG 60.047 61.111 0.00 0.00 0.00 4.10
368 369 2.501223 GATCGTGCCCCTGACAACGA 62.501 60.000 2.10 2.10 0.00 3.85
369 370 2.107041 ATCGTGCCCCTGACAACGAA 62.107 55.000 3.64 0.00 33.34 3.85
370 371 2.317609 CGTGCCCCTGACAACGAAG 61.318 63.158 0.00 0.00 0.00 3.79
371 372 1.966451 GTGCCCCTGACAACGAAGG 60.966 63.158 0.00 0.00 0.00 3.46
377 378 2.024176 CCTGACAACGAAGGGGTATG 57.976 55.000 0.00 0.00 0.00 2.39
378 379 1.406887 CCTGACAACGAAGGGGTATGG 60.407 57.143 0.00 0.00 0.00 2.74
379 380 1.553248 CTGACAACGAAGGGGTATGGA 59.447 52.381 0.00 0.00 0.00 3.41
380 381 1.276989 TGACAACGAAGGGGTATGGAC 59.723 52.381 0.00 0.00 0.00 4.02
381 382 0.248289 ACAACGAAGGGGTATGGACG 59.752 55.000 0.00 0.00 0.00 4.79
382 383 0.533491 CAACGAAGGGGTATGGACGA 59.467 55.000 0.00 0.00 0.00 4.20
383 384 1.066716 CAACGAAGGGGTATGGACGAA 60.067 52.381 0.00 0.00 0.00 3.85
384 385 1.492764 ACGAAGGGGTATGGACGAAT 58.507 50.000 0.00 0.00 0.00 3.34
385 386 1.411612 ACGAAGGGGTATGGACGAATC 59.588 52.381 0.00 0.00 0.00 2.52
386 387 1.687123 CGAAGGGGTATGGACGAATCT 59.313 52.381 0.00 0.00 0.00 2.40
387 388 2.288273 CGAAGGGGTATGGACGAATCTC 60.288 54.545 0.00 0.00 0.00 2.75
388 389 2.471815 AGGGGTATGGACGAATCTCA 57.528 50.000 0.00 0.00 0.00 3.27
389 390 2.977808 AGGGGTATGGACGAATCTCAT 58.022 47.619 0.00 0.00 0.00 2.90
390 391 2.900546 AGGGGTATGGACGAATCTCATC 59.099 50.000 0.00 0.00 0.00 2.92
391 392 2.028020 GGGGTATGGACGAATCTCATCC 60.028 54.545 0.00 0.00 0.00 3.51
392 393 2.028020 GGGTATGGACGAATCTCATCCC 60.028 54.545 0.00 0.00 0.00 3.85
393 394 2.900546 GGTATGGACGAATCTCATCCCT 59.099 50.000 0.00 0.00 0.00 4.20
394 395 3.325135 GGTATGGACGAATCTCATCCCTT 59.675 47.826 0.00 0.00 0.00 3.95
395 396 2.988010 TGGACGAATCTCATCCCTTG 57.012 50.000 0.00 0.00 0.00 3.61
396 397 2.466846 TGGACGAATCTCATCCCTTGA 58.533 47.619 0.00 0.00 0.00 3.02
397 398 3.041211 TGGACGAATCTCATCCCTTGAT 58.959 45.455 0.00 0.00 32.72 2.57
399 400 3.181461 GGACGAATCTCATCCCTTGATGT 60.181 47.826 0.00 0.00 46.96 3.06
400 401 3.801698 ACGAATCTCATCCCTTGATGTG 58.198 45.455 0.00 1.11 46.96 3.21
401 402 3.198635 ACGAATCTCATCCCTTGATGTGT 59.801 43.478 0.00 0.00 46.96 3.72
402 403 4.194640 CGAATCTCATCCCTTGATGTGTT 58.805 43.478 2.77 0.00 46.96 3.32
403 404 4.637534 CGAATCTCATCCCTTGATGTGTTT 59.362 41.667 2.77 2.55 46.96 2.83
404 405 5.817296 CGAATCTCATCCCTTGATGTGTTTA 59.183 40.000 2.77 0.00 46.96 2.01
405 406 6.316140 CGAATCTCATCCCTTGATGTGTTTAA 59.684 38.462 2.77 0.00 46.96 1.52
406 407 7.466455 CGAATCTCATCCCTTGATGTGTTTAAG 60.466 40.741 2.77 0.00 46.96 1.85
407 408 6.373005 TCTCATCCCTTGATGTGTTTAAGA 57.627 37.500 2.77 0.00 46.96 2.10
408 409 6.409704 TCTCATCCCTTGATGTGTTTAAGAG 58.590 40.000 2.77 0.00 46.96 2.85
409 410 5.500234 TCATCCCTTGATGTGTTTAAGAGG 58.500 41.667 2.77 0.00 46.96 3.69
410 411 4.301072 TCCCTTGATGTGTTTAAGAGGG 57.699 45.455 0.00 0.00 42.96 4.30
411 412 3.655777 TCCCTTGATGTGTTTAAGAGGGT 59.344 43.478 5.51 0.00 42.36 4.34
412 413 3.758554 CCCTTGATGTGTTTAAGAGGGTG 59.241 47.826 0.00 0.00 38.01 4.61
413 414 4.398319 CCTTGATGTGTTTAAGAGGGTGT 58.602 43.478 0.00 0.00 0.00 4.16
414 415 5.514136 CCCTTGATGTGTTTAAGAGGGTGTA 60.514 44.000 0.00 0.00 38.01 2.90
415 416 5.411669 CCTTGATGTGTTTAAGAGGGTGTAC 59.588 44.000 0.00 0.00 0.00 2.90
416 417 5.818678 TGATGTGTTTAAGAGGGTGTACT 57.181 39.130 0.00 0.00 0.00 2.73
417 418 5.790593 TGATGTGTTTAAGAGGGTGTACTC 58.209 41.667 0.00 0.00 37.77 2.59
418 419 5.305902 TGATGTGTTTAAGAGGGTGTACTCA 59.694 40.000 0.00 0.00 39.97 3.41
419 420 5.617528 TGTGTTTAAGAGGGTGTACTCAA 57.382 39.130 0.00 0.00 39.97 3.02
420 421 5.607477 TGTGTTTAAGAGGGTGTACTCAAG 58.393 41.667 0.00 0.00 39.97 3.02
421 422 4.451435 GTGTTTAAGAGGGTGTACTCAAGC 59.549 45.833 0.00 0.00 39.97 4.01
422 423 4.101898 TGTTTAAGAGGGTGTACTCAAGCA 59.898 41.667 0.00 0.00 39.97 3.91
423 424 4.537135 TTAAGAGGGTGTACTCAAGCAG 57.463 45.455 0.00 0.00 39.97 4.24
424 425 2.310779 AGAGGGTGTACTCAAGCAGA 57.689 50.000 0.00 0.00 39.97 4.26
425 426 2.609747 AGAGGGTGTACTCAAGCAGAA 58.390 47.619 0.00 0.00 39.97 3.02
426 427 2.564947 AGAGGGTGTACTCAAGCAGAAG 59.435 50.000 0.00 0.00 39.97 2.85
427 428 2.300437 GAGGGTGTACTCAAGCAGAAGT 59.700 50.000 0.00 0.00 37.44 3.01
428 429 3.507411 AGGGTGTACTCAAGCAGAAGTA 58.493 45.455 0.00 0.00 0.00 2.24
453 454 5.588648 AGAAAAGAAAAGGACGTTCACATGA 59.411 36.000 0.00 0.00 0.00 3.07
544 545 3.164269 CCCAGCCCGTGCCTATCT 61.164 66.667 0.00 0.00 38.69 1.98
545 546 2.109799 CCAGCCCGTGCCTATCTG 59.890 66.667 0.00 0.00 38.69 2.90
651 654 2.365293 AGTGCCCAACTAAAGCAAAAGG 59.635 45.455 0.00 0.00 37.36 3.11
683 686 2.961768 GGCCAAAGCGCTAAAGCA 59.038 55.556 22.12 0.00 42.21 3.91
826 830 6.566197 ACTTCTGAATCTTTCATGGTGTTC 57.434 37.500 0.00 0.00 39.30 3.18
830 834 3.436704 TGAATCTTTCATGGTGTTCTCGC 59.563 43.478 0.00 0.00 34.08 5.03
832 836 0.443869 CTTTCATGGTGTTCTCGCCG 59.556 55.000 0.00 0.00 46.30 6.46
833 837 0.034198 TTTCATGGTGTTCTCGCCGA 59.966 50.000 0.00 0.00 46.30 5.54
912 923 2.125106 GAGCGGCCAGGACGAATT 60.125 61.111 22.66 1.78 35.20 2.17
981 992 1.675641 GGCACCAAGATTCGGCAGT 60.676 57.895 0.00 0.00 0.00 4.40
988 999 1.536766 CAAGATTCGGCAGTGAAGCAA 59.463 47.619 0.00 0.00 36.74 3.91
1303 1314 2.665603 GCTTCTTCCAGGTCCGCT 59.334 61.111 0.00 0.00 0.00 5.52
1325 1336 1.480545 CATGTACCAGTCGACCCATCA 59.519 52.381 13.01 6.24 0.00 3.07
1329 1340 0.541998 ACCAGTCGACCCATCACTGA 60.542 55.000 13.01 0.00 36.70 3.41
1348 1359 4.564372 ACTGAATCACTTCGTCAATCATCG 59.436 41.667 0.00 0.00 33.86 3.84
1532 1546 1.211969 CGCCTTCGTCTTCTCCGAA 59.788 57.895 0.00 0.00 41.60 4.30
1784 1798 1.291272 GAACTTCTACCCGCCGTGT 59.709 57.895 0.00 0.00 0.00 4.49
1985 1999 1.805945 CGGCAGGTACAAGAGCGTC 60.806 63.158 0.00 0.00 0.00 5.19
2075 2089 4.070552 GTCGAGCTCGGCCCACTT 62.071 66.667 33.98 0.00 38.15 3.16
2087 2101 1.900545 GCCCACTTCCGGAGCTAGTT 61.901 60.000 3.34 0.00 0.00 2.24
2213 2227 3.260884 AGATCAACTAGACCGCCAAGAAA 59.739 43.478 0.00 0.00 0.00 2.52
2224 2238 6.465084 AGACCGCCAAGAAATATAATCCTAC 58.535 40.000 0.00 0.00 0.00 3.18
2281 2295 7.295930 GTTTGTGTACAGGATTGCTAAGTAAC 58.704 38.462 0.00 0.00 0.00 2.50
2345 2359 5.420409 CAGAAGAACTGTATTCCTGGTACC 58.580 45.833 4.43 4.43 41.30 3.34
2375 2389 3.702147 CCAAGCAACAATTGGCCAA 57.298 47.368 23.00 23.00 40.74 4.52
2489 2503 8.286191 AGGACTTTAACCATGATCATTCTTTC 57.714 34.615 5.16 0.00 0.00 2.62
2490 2504 7.340487 AGGACTTTAACCATGATCATTCTTTCC 59.660 37.037 5.16 4.37 0.00 3.13
2513 2528 5.350365 CCATCCATTGACAATTGAAAAGCAG 59.650 40.000 13.59 1.19 0.00 4.24
2547 2562 5.080969 TCCATCACTAGGAAAAGGTAACG 57.919 43.478 0.00 0.00 34.64 3.18
2558 2573 0.393820 AAGGTAACGGCGGTGAGAAA 59.606 50.000 8.19 0.00 46.39 2.52
2566 2581 1.244019 GGCGGTGAGAAACAAGGCAT 61.244 55.000 0.00 0.00 35.35 4.40
2731 2746 0.107017 GCAGAGCAGGGCTTGGAATA 60.107 55.000 0.00 0.00 39.88 1.75
2809 2825 5.079643 AGCAACAAACTTGACCTGGAATAT 58.920 37.500 0.00 0.00 0.00 1.28
2824 2840 5.473162 CCTGGAATATATGAAAACGCATCCA 59.527 40.000 0.00 0.00 0.00 3.41
2875 2892 5.631026 ACATAAGCAAGCTTCAAACATACG 58.369 37.500 11.05 0.00 37.47 3.06
2876 2893 2.619013 AGCAAGCTTCAAACATACGC 57.381 45.000 0.00 0.00 0.00 4.42
2877 2894 1.879380 AGCAAGCTTCAAACATACGCA 59.121 42.857 0.00 0.00 0.00 5.24
2878 2895 2.293122 AGCAAGCTTCAAACATACGCAA 59.707 40.909 0.00 0.00 0.00 4.85
2879 2896 3.049206 GCAAGCTTCAAACATACGCAAA 58.951 40.909 0.00 0.00 0.00 3.68
2880 2897 3.121362 GCAAGCTTCAAACATACGCAAAC 60.121 43.478 0.00 0.00 0.00 2.93
2882 2899 1.382088 GCTTCAAACATACGCAAACGC 59.618 47.619 0.00 0.00 45.53 4.84
2883 2900 2.645163 CTTCAAACATACGCAAACGCA 58.355 42.857 0.00 0.00 45.53 5.24
2884 2901 2.757686 TCAAACATACGCAAACGCAA 57.242 40.000 0.00 0.00 45.53 4.85
2885 2902 2.376956 TCAAACATACGCAAACGCAAC 58.623 42.857 0.00 0.00 45.53 4.17
2886 2903 2.112522 CAAACATACGCAAACGCAACA 58.887 42.857 0.00 0.00 45.53 3.33
2887 2904 2.697431 AACATACGCAAACGCAACAT 57.303 40.000 0.00 0.00 45.53 2.71
2888 2905 2.241259 ACATACGCAAACGCAACATC 57.759 45.000 0.00 0.00 45.53 3.06
2889 2906 1.171052 CATACGCAAACGCAACATCG 58.829 50.000 0.00 0.00 45.53 3.84
2890 2907 0.096281 ATACGCAAACGCAACATCGG 59.904 50.000 0.00 0.00 45.53 4.18
2891 2908 0.944788 TACGCAAACGCAACATCGGA 60.945 50.000 0.00 0.00 45.53 4.55
2892 2909 1.082431 CGCAAACGCAACATCGGAA 60.082 52.632 0.00 0.00 0.00 4.30
2893 2910 1.059657 CGCAAACGCAACATCGGAAG 61.060 55.000 0.00 0.00 0.00 3.46
2894 2911 1.337110 GCAAACGCAACATCGGAAGC 61.337 55.000 0.00 0.00 0.00 3.86
2895 2912 0.040514 CAAACGCAACATCGGAAGCA 60.041 50.000 0.00 0.00 0.00 3.91
2896 2913 0.040425 AAACGCAACATCGGAAGCAC 60.040 50.000 0.00 0.00 0.00 4.40
2897 2914 1.163420 AACGCAACATCGGAAGCACA 61.163 50.000 0.00 0.00 0.00 4.57
2898 2915 1.154413 CGCAACATCGGAAGCACAC 60.154 57.895 0.00 0.00 0.00 3.82
2899 2916 1.840630 CGCAACATCGGAAGCACACA 61.841 55.000 0.00 0.00 0.00 3.72
2900 2917 0.310543 GCAACATCGGAAGCACACAA 59.689 50.000 0.00 0.00 0.00 3.33
2901 2918 1.268999 GCAACATCGGAAGCACACAAA 60.269 47.619 0.00 0.00 0.00 2.83
2902 2919 2.607771 GCAACATCGGAAGCACACAAAT 60.608 45.455 0.00 0.00 0.00 2.32
2903 2920 2.981805 CAACATCGGAAGCACACAAATG 59.018 45.455 0.00 0.00 0.00 2.32
2904 2921 2.229792 ACATCGGAAGCACACAAATGT 58.770 42.857 0.00 0.00 40.80 2.71
2905 2922 3.407698 ACATCGGAAGCACACAAATGTA 58.592 40.909 0.00 0.00 36.72 2.29
2906 2923 3.188460 ACATCGGAAGCACACAAATGTAC 59.812 43.478 0.00 0.00 36.72 2.90
2907 2924 2.839975 TCGGAAGCACACAAATGTACA 58.160 42.857 0.00 0.00 36.72 2.90
2908 2925 3.206964 TCGGAAGCACACAAATGTACAA 58.793 40.909 0.00 0.00 36.72 2.41
2909 2926 3.628032 TCGGAAGCACACAAATGTACAAA 59.372 39.130 0.00 0.00 36.72 2.83
2910 2927 4.096532 TCGGAAGCACACAAATGTACAAAA 59.903 37.500 0.00 0.00 36.72 2.44
2911 2928 4.800993 CGGAAGCACACAAATGTACAAAAA 59.199 37.500 0.00 0.00 36.72 1.94
2912 2929 5.051774 CGGAAGCACACAAATGTACAAAAAG 60.052 40.000 0.00 0.00 36.72 2.27
2913 2930 6.039616 GGAAGCACACAAATGTACAAAAAGA 58.960 36.000 0.00 0.00 36.72 2.52
2914 2931 6.198966 GGAAGCACACAAATGTACAAAAAGAG 59.801 38.462 0.00 0.00 36.72 2.85
2915 2932 6.207691 AGCACACAAATGTACAAAAAGAGT 57.792 33.333 0.00 0.00 36.72 3.24
2916 2933 6.630071 AGCACACAAATGTACAAAAAGAGTT 58.370 32.000 0.00 0.00 36.72 3.01
2917 2934 7.767261 AGCACACAAATGTACAAAAAGAGTTA 58.233 30.769 0.00 0.00 36.72 2.24
2918 2935 8.413229 AGCACACAAATGTACAAAAAGAGTTAT 58.587 29.630 0.00 0.00 36.72 1.89
2919 2936 9.672086 GCACACAAATGTACAAAAAGAGTTATA 57.328 29.630 0.00 0.00 36.72 0.98
2944 2961 8.682936 AATAAATATAAAGTGGCCACAGAGAG 57.317 34.615 36.39 0.00 0.00 3.20
2945 2962 5.700402 AATATAAAGTGGCCACAGAGAGT 57.300 39.130 36.39 18.95 0.00 3.24
2946 2963 5.700402 ATATAAAGTGGCCACAGAGAGTT 57.300 39.130 36.39 18.68 0.00 3.01
2947 2964 6.808321 ATATAAAGTGGCCACAGAGAGTTA 57.192 37.500 36.39 21.94 0.00 2.24
2948 2965 5.700402 ATAAAGTGGCCACAGAGAGTTAT 57.300 39.130 36.39 22.95 0.00 1.89
2949 2966 4.373156 AAAGTGGCCACAGAGAGTTATT 57.627 40.909 36.39 16.43 0.00 1.40
2950 2967 4.373156 AAGTGGCCACAGAGAGTTATTT 57.627 40.909 36.39 15.68 0.00 1.40
2951 2968 4.373156 AGTGGCCACAGAGAGTTATTTT 57.627 40.909 36.39 9.21 0.00 1.82
2952 2969 4.729868 AGTGGCCACAGAGAGTTATTTTT 58.270 39.130 36.39 8.73 0.00 1.94
2953 2970 4.520492 AGTGGCCACAGAGAGTTATTTTTG 59.480 41.667 36.39 0.00 0.00 2.44
2954 2971 3.255642 TGGCCACAGAGAGTTATTTTTGC 59.744 43.478 0.00 0.00 0.00 3.68
2955 2972 3.255642 GGCCACAGAGAGTTATTTTTGCA 59.744 43.478 0.00 0.00 0.00 4.08
2956 2973 4.082026 GGCCACAGAGAGTTATTTTTGCAT 60.082 41.667 0.00 0.00 0.00 3.96
2957 2974 5.098211 GCCACAGAGAGTTATTTTTGCATC 58.902 41.667 0.00 0.00 0.00 3.91
2958 2975 5.327091 CCACAGAGAGTTATTTTTGCATCG 58.673 41.667 0.00 0.00 0.00 3.84
2959 2976 5.327091 CACAGAGAGTTATTTTTGCATCGG 58.673 41.667 0.00 0.00 0.00 4.18
2960 2977 5.122239 CACAGAGAGTTATTTTTGCATCGGA 59.878 40.000 0.00 0.00 0.00 4.55
2961 2978 5.705441 ACAGAGAGTTATTTTTGCATCGGAA 59.295 36.000 0.00 0.00 0.00 4.30
2962 2979 6.024049 CAGAGAGTTATTTTTGCATCGGAAC 58.976 40.000 0.00 0.00 0.00 3.62
2963 2980 5.123979 AGAGAGTTATTTTTGCATCGGAACC 59.876 40.000 0.00 0.00 0.00 3.62
2964 2981 4.764823 AGAGTTATTTTTGCATCGGAACCA 59.235 37.500 0.00 0.00 0.00 3.67
2965 2982 5.418840 AGAGTTATTTTTGCATCGGAACCAT 59.581 36.000 0.00 0.00 0.00 3.55
2966 2983 5.650543 AGTTATTTTTGCATCGGAACCATC 58.349 37.500 0.00 0.00 0.00 3.51
2967 2984 5.184864 AGTTATTTTTGCATCGGAACCATCA 59.815 36.000 0.00 0.00 0.00 3.07
2968 2985 4.533919 ATTTTTGCATCGGAACCATCAA 57.466 36.364 0.00 0.00 0.00 2.57
2969 2986 3.296322 TTTTGCATCGGAACCATCAAC 57.704 42.857 0.00 0.00 0.00 3.18
2970 2987 0.801872 TTGCATCGGAACCATCAACG 59.198 50.000 0.00 0.00 0.00 4.10
2971 2988 1.062525 GCATCGGAACCATCAACGC 59.937 57.895 0.00 0.00 0.00 4.84
2972 2989 1.369091 GCATCGGAACCATCAACGCT 61.369 55.000 0.00 0.00 0.00 5.07
2973 2990 1.086696 CATCGGAACCATCAACGCTT 58.913 50.000 0.00 0.00 0.00 4.68
2974 2991 1.468520 CATCGGAACCATCAACGCTTT 59.531 47.619 0.00 0.00 0.00 3.51
2975 2992 1.153353 TCGGAACCATCAACGCTTTC 58.847 50.000 0.00 0.00 0.00 2.62
2976 2993 1.156736 CGGAACCATCAACGCTTTCT 58.843 50.000 0.00 0.00 0.00 2.52
2977 2994 2.028839 TCGGAACCATCAACGCTTTCTA 60.029 45.455 0.00 0.00 0.00 2.10
2978 2995 2.093783 CGGAACCATCAACGCTTTCTAC 59.906 50.000 0.00 0.00 0.00 2.59
2979 2996 3.071479 GGAACCATCAACGCTTTCTACA 58.929 45.455 0.00 0.00 0.00 2.74
2980 2997 3.120304 GGAACCATCAACGCTTTCTACAC 60.120 47.826 0.00 0.00 0.00 2.90
2981 2998 2.423577 ACCATCAACGCTTTCTACACC 58.576 47.619 0.00 0.00 0.00 4.16
2982 2999 1.737793 CCATCAACGCTTTCTACACCC 59.262 52.381 0.00 0.00 0.00 4.61
2983 3000 2.422597 CATCAACGCTTTCTACACCCA 58.577 47.619 0.00 0.00 0.00 4.51
2984 3001 2.851263 TCAACGCTTTCTACACCCAT 57.149 45.000 0.00 0.00 0.00 4.00
2985 3002 2.422597 TCAACGCTTTCTACACCCATG 58.577 47.619 0.00 0.00 0.00 3.66
2986 3003 1.135689 CAACGCTTTCTACACCCATGC 60.136 52.381 0.00 0.00 0.00 4.06
2987 3004 0.324943 ACGCTTTCTACACCCATGCT 59.675 50.000 0.00 0.00 0.00 3.79
2988 3005 1.553248 ACGCTTTCTACACCCATGCTA 59.447 47.619 0.00 0.00 0.00 3.49
2989 3006 1.933853 CGCTTTCTACACCCATGCTAC 59.066 52.381 0.00 0.00 0.00 3.58
2990 3007 2.676750 CGCTTTCTACACCCATGCTACA 60.677 50.000 0.00 0.00 0.00 2.74
2991 3008 2.678336 GCTTTCTACACCCATGCTACAC 59.322 50.000 0.00 0.00 0.00 2.90
2992 3009 3.868369 GCTTTCTACACCCATGCTACACA 60.868 47.826 0.00 0.00 0.00 3.72
2993 3010 4.323417 CTTTCTACACCCATGCTACACAA 58.677 43.478 0.00 0.00 0.00 3.33
2994 3011 4.359434 TTCTACACCCATGCTACACAAA 57.641 40.909 0.00 0.00 0.00 2.83
2995 3012 3.670625 TCTACACCCATGCTACACAAAC 58.329 45.455 0.00 0.00 0.00 2.93
2996 3013 2.656947 ACACCCATGCTACACAAACT 57.343 45.000 0.00 0.00 0.00 2.66
2997 3014 2.944129 ACACCCATGCTACACAAACTT 58.056 42.857 0.00 0.00 0.00 2.66
2998 3015 2.622942 ACACCCATGCTACACAAACTTG 59.377 45.455 0.00 0.00 0.00 3.16
2999 3016 1.613437 ACCCATGCTACACAAACTTGC 59.387 47.619 0.00 0.00 0.00 4.01
3000 3017 1.612950 CCCATGCTACACAAACTTGCA 59.387 47.619 0.00 0.00 38.05 4.08
3001 3018 2.607771 CCCATGCTACACAAACTTGCAC 60.608 50.000 0.00 0.00 36.44 4.57
3002 3019 2.309693 CATGCTACACAAACTTGCACG 58.690 47.619 0.00 0.00 36.44 5.34
3003 3020 1.657822 TGCTACACAAACTTGCACGA 58.342 45.000 0.00 0.00 0.00 4.35
3004 3021 2.217750 TGCTACACAAACTTGCACGAT 58.782 42.857 0.00 0.00 0.00 3.73
3005 3022 2.032117 TGCTACACAAACTTGCACGATG 60.032 45.455 0.00 0.00 0.00 3.84
3006 3023 2.665519 GCTACACAAACTTGCACGATGG 60.666 50.000 0.00 0.00 0.00 3.51
3007 3024 0.030638 ACACAAACTTGCACGATGGC 59.969 50.000 0.00 0.00 0.00 4.40
3008 3025 0.030504 CACAAACTTGCACGATGGCA 59.969 50.000 0.00 0.00 43.19 4.92
3022 3039 3.019964 TGGCAACAGATCGCAAAGT 57.980 47.368 0.00 0.00 46.17 2.66
3023 3040 0.874390 TGGCAACAGATCGCAAAGTC 59.126 50.000 0.00 0.00 46.17 3.01
3024 3041 0.874390 GGCAACAGATCGCAAAGTCA 59.126 50.000 0.00 0.00 0.00 3.41
3025 3042 1.135859 GGCAACAGATCGCAAAGTCAG 60.136 52.381 0.00 0.00 0.00 3.51
3026 3043 1.532868 GCAACAGATCGCAAAGTCAGT 59.467 47.619 0.00 0.00 0.00 3.41
3027 3044 2.031682 GCAACAGATCGCAAAGTCAGTT 60.032 45.455 0.00 0.00 0.00 3.16
3028 3045 3.548818 GCAACAGATCGCAAAGTCAGTTT 60.549 43.478 0.00 0.00 0.00 2.66
3034 3051 4.210447 CAAAGTCAGTTTGCGCGG 57.790 55.556 8.83 0.00 39.29 6.46
3035 3052 1.355210 CAAAGTCAGTTTGCGCGGT 59.645 52.632 8.83 0.00 39.29 5.68
3036 3053 0.584396 CAAAGTCAGTTTGCGCGGTA 59.416 50.000 8.83 0.00 39.29 4.02
3037 3054 0.584876 AAAGTCAGTTTGCGCGGTAC 59.415 50.000 8.83 0.00 0.00 3.34
3038 3055 1.226030 AAGTCAGTTTGCGCGGTACC 61.226 55.000 8.83 0.16 0.00 3.34
3039 3056 1.666872 GTCAGTTTGCGCGGTACCT 60.667 57.895 8.83 0.00 0.00 3.08
3040 3057 0.388907 GTCAGTTTGCGCGGTACCTA 60.389 55.000 8.83 0.00 0.00 3.08
3041 3058 0.388907 TCAGTTTGCGCGGTACCTAC 60.389 55.000 8.83 0.61 0.00 3.18
3042 3059 1.079612 AGTTTGCGCGGTACCTACC 60.080 57.895 8.83 0.00 42.98 3.18
3050 3067 4.039042 GGTACCTACCGGCAAGGA 57.961 61.111 26.15 10.09 45.00 3.36
3051 3068 2.524611 GGTACCTACCGGCAAGGAT 58.475 57.895 26.15 14.45 45.00 3.24
3052 3069 0.391966 GGTACCTACCGGCAAGGATC 59.608 60.000 26.15 17.68 45.00 3.36
3053 3070 1.411041 GTACCTACCGGCAAGGATCT 58.589 55.000 26.15 9.73 45.00 2.75
3054 3071 1.340568 GTACCTACCGGCAAGGATCTC 59.659 57.143 26.15 11.44 45.00 2.75
3055 3072 0.325296 ACCTACCGGCAAGGATCTCA 60.325 55.000 26.15 0.00 45.00 3.27
3056 3073 1.051812 CCTACCGGCAAGGATCTCAT 58.948 55.000 16.83 0.00 45.00 2.90
3057 3074 1.001406 CCTACCGGCAAGGATCTCATC 59.999 57.143 16.83 0.00 45.00 2.92
3058 3075 0.673985 TACCGGCAAGGATCTCATCG 59.326 55.000 0.00 0.00 45.00 3.84
3059 3076 1.330655 ACCGGCAAGGATCTCATCGT 61.331 55.000 0.00 0.00 45.00 3.73
3060 3077 0.179073 CCGGCAAGGATCTCATCGTT 60.179 55.000 0.00 0.00 45.00 3.85
3061 3078 1.656652 CGGCAAGGATCTCATCGTTT 58.343 50.000 0.00 0.00 35.40 3.60
3062 3079 1.328680 CGGCAAGGATCTCATCGTTTG 59.671 52.381 0.00 0.00 35.40 2.93
3063 3080 1.064654 GGCAAGGATCTCATCGTTTGC 59.935 52.381 12.45 12.45 43.64 3.68
3064 3081 1.739466 GCAAGGATCTCATCGTTTGCA 59.261 47.619 14.54 0.00 43.73 4.08
3065 3082 2.162208 GCAAGGATCTCATCGTTTGCAA 59.838 45.455 14.54 0.00 43.73 4.08
3066 3083 3.751621 CAAGGATCTCATCGTTTGCAAC 58.248 45.455 0.00 0.00 35.40 4.17
3067 3084 2.359900 AGGATCTCATCGTTTGCAACC 58.640 47.619 0.00 0.00 0.00 3.77
3068 3085 1.401905 GGATCTCATCGTTTGCAACCC 59.598 52.381 0.00 0.00 0.00 4.11
3069 3086 1.062587 GATCTCATCGTTTGCAACCCG 59.937 52.381 0.00 4.84 0.00 5.28
3070 3087 1.154225 CTCATCGTTTGCAACCCGC 60.154 57.895 11.75 0.00 42.89 6.13
3071 3088 1.577328 CTCATCGTTTGCAACCCGCT 61.577 55.000 11.75 1.21 43.06 5.52
3072 3089 1.169661 TCATCGTTTGCAACCCGCTT 61.170 50.000 11.75 1.34 43.06 4.68
3073 3090 0.318614 CATCGTTTGCAACCCGCTTT 60.319 50.000 11.75 0.00 43.06 3.51
3074 3091 1.068885 CATCGTTTGCAACCCGCTTTA 60.069 47.619 11.75 0.00 43.06 1.85
3075 3092 1.022735 TCGTTTGCAACCCGCTTTAA 58.977 45.000 11.75 0.00 43.06 1.52
3076 3093 1.002251 TCGTTTGCAACCCGCTTTAAG 60.002 47.619 11.75 0.00 43.06 1.85
3077 3094 1.002251 CGTTTGCAACCCGCTTTAAGA 60.002 47.619 0.00 0.00 43.06 2.10
3078 3095 2.351350 CGTTTGCAACCCGCTTTAAGAT 60.351 45.455 0.00 0.00 43.06 2.40
3079 3096 3.120130 CGTTTGCAACCCGCTTTAAGATA 60.120 43.478 0.00 0.00 43.06 1.98
3080 3097 4.163552 GTTTGCAACCCGCTTTAAGATAC 58.836 43.478 0.00 0.00 43.06 2.24
3081 3098 3.060736 TGCAACCCGCTTTAAGATACA 57.939 42.857 0.00 0.00 43.06 2.29
3082 3099 3.413327 TGCAACCCGCTTTAAGATACAA 58.587 40.909 0.00 0.00 43.06 2.41
3083 3100 3.438781 TGCAACCCGCTTTAAGATACAAG 59.561 43.478 0.00 0.00 43.06 3.16
3084 3101 3.730963 GCAACCCGCTTTAAGATACAAGC 60.731 47.826 0.00 0.00 41.79 4.01
3085 3102 2.640184 ACCCGCTTTAAGATACAAGCC 58.360 47.619 0.00 0.00 42.15 4.35
3086 3103 2.026636 ACCCGCTTTAAGATACAAGCCA 60.027 45.455 0.00 0.00 42.15 4.75
3087 3104 3.013921 CCCGCTTTAAGATACAAGCCAA 58.986 45.455 0.00 0.00 42.15 4.52
3088 3105 3.065371 CCCGCTTTAAGATACAAGCCAAG 59.935 47.826 0.00 0.00 42.15 3.61
3089 3106 3.065371 CCGCTTTAAGATACAAGCCAAGG 59.935 47.826 0.00 0.00 42.15 3.61
3090 3107 3.938963 CGCTTTAAGATACAAGCCAAGGA 59.061 43.478 0.00 0.00 42.15 3.36
3091 3108 4.201822 CGCTTTAAGATACAAGCCAAGGAC 60.202 45.833 0.00 0.00 42.15 3.85
3092 3109 4.700213 GCTTTAAGATACAAGCCAAGGACA 59.300 41.667 0.00 0.00 39.70 4.02
3093 3110 5.163713 GCTTTAAGATACAAGCCAAGGACAG 60.164 44.000 0.00 0.00 39.70 3.51
3094 3111 2.409948 AGATACAAGCCAAGGACAGC 57.590 50.000 0.00 0.00 0.00 4.40
3095 3112 1.912043 AGATACAAGCCAAGGACAGCT 59.088 47.619 0.00 0.00 42.40 4.24
3096 3113 2.012673 GATACAAGCCAAGGACAGCTG 58.987 52.381 13.48 13.48 39.87 4.24
3097 3114 0.764890 TACAAGCCAAGGACAGCTGT 59.235 50.000 21.88 21.88 39.87 4.40
3098 3115 0.106519 ACAAGCCAAGGACAGCTGTT 60.107 50.000 22.65 2.27 39.87 3.16
3099 3116 1.142870 ACAAGCCAAGGACAGCTGTTA 59.857 47.619 22.65 0.00 39.87 2.41
3100 3117 2.224867 ACAAGCCAAGGACAGCTGTTAT 60.225 45.455 22.65 10.00 39.87 1.89
3101 3118 3.009033 ACAAGCCAAGGACAGCTGTTATA 59.991 43.478 22.65 0.00 39.87 0.98
3102 3119 3.268023 AGCCAAGGACAGCTGTTATAC 57.732 47.619 22.65 11.86 38.11 1.47
3103 3120 2.092914 AGCCAAGGACAGCTGTTATACC 60.093 50.000 22.65 17.30 38.11 2.73
3104 3121 2.092914 GCCAAGGACAGCTGTTATACCT 60.093 50.000 22.65 19.40 0.00 3.08
3105 3122 3.622455 GCCAAGGACAGCTGTTATACCTT 60.622 47.826 24.71 24.71 38.10 3.50
3106 3123 4.192317 CCAAGGACAGCTGTTATACCTTC 58.808 47.826 26.61 11.07 35.88 3.46
3107 3124 4.192317 CAAGGACAGCTGTTATACCTTCC 58.808 47.826 26.61 18.36 35.88 3.46
3108 3125 3.725634 AGGACAGCTGTTATACCTTCCT 58.274 45.455 22.65 16.73 0.00 3.36
3109 3126 4.104831 AGGACAGCTGTTATACCTTCCTT 58.895 43.478 22.65 0.00 0.00 3.36
3110 3127 4.536489 AGGACAGCTGTTATACCTTCCTTT 59.464 41.667 22.65 0.00 0.00 3.11
3111 3128 4.876679 GGACAGCTGTTATACCTTCCTTTC 59.123 45.833 22.65 2.14 0.00 2.62
3112 3129 5.338463 GGACAGCTGTTATACCTTCCTTTCT 60.338 44.000 22.65 0.00 0.00 2.52
3113 3130 6.127140 GGACAGCTGTTATACCTTCCTTTCTA 60.127 42.308 22.65 0.00 0.00 2.10
3114 3131 6.641474 ACAGCTGTTATACCTTCCTTTCTAC 58.359 40.000 15.25 0.00 0.00 2.59
3115 3132 6.440965 ACAGCTGTTATACCTTCCTTTCTACT 59.559 38.462 15.25 0.00 0.00 2.57
3116 3133 6.758886 CAGCTGTTATACCTTCCTTTCTACTG 59.241 42.308 5.25 0.00 0.00 2.74
3117 3134 6.440965 AGCTGTTATACCTTCCTTTCTACTGT 59.559 38.462 0.00 0.00 0.00 3.55
3118 3135 7.618512 AGCTGTTATACCTTCCTTTCTACTGTA 59.381 37.037 0.00 0.00 0.00 2.74
3119 3136 7.705752 GCTGTTATACCTTCCTTTCTACTGTAC 59.294 40.741 0.00 0.00 0.00 2.90
3120 3137 8.890410 TGTTATACCTTCCTTTCTACTGTACT 57.110 34.615 0.00 0.00 0.00 2.73
3121 3138 9.979897 TGTTATACCTTCCTTTCTACTGTACTA 57.020 33.333 0.00 0.00 0.00 1.82
3126 3143 8.890410 ACCTTCCTTTCTACTGTACTATACAA 57.110 34.615 0.00 0.00 38.38 2.41
3127 3144 9.490083 ACCTTCCTTTCTACTGTACTATACAAT 57.510 33.333 0.00 0.00 38.38 2.71
3192 3209 8.417884 AGTTATCTCACATCTAAGTTTAGAGCC 58.582 37.037 7.57 0.00 42.55 4.70
3193 3210 5.250235 TCTCACATCTAAGTTTAGAGCCG 57.750 43.478 7.57 2.28 42.55 5.52
3194 3211 4.705507 TCTCACATCTAAGTTTAGAGCCGT 59.294 41.667 7.57 2.80 42.55 5.68
3195 3212 4.995124 TCACATCTAAGTTTAGAGCCGTC 58.005 43.478 7.57 0.00 42.55 4.79
3196 3213 3.791887 CACATCTAAGTTTAGAGCCGTCG 59.208 47.826 7.57 0.00 42.55 5.12
3197 3214 3.181489 ACATCTAAGTTTAGAGCCGTCGG 60.181 47.826 6.99 6.99 42.55 4.79
3198 3215 2.715046 TCTAAGTTTAGAGCCGTCGGA 58.285 47.619 17.49 0.00 34.99 4.55
3199 3216 3.285484 TCTAAGTTTAGAGCCGTCGGAT 58.715 45.455 17.49 9.33 34.99 4.18
3200 3217 2.580966 AAGTTTAGAGCCGTCGGATC 57.419 50.000 21.82 21.82 38.56 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.127533 CTGCTGCCCTTGTACGCC 61.128 66.667 0.00 0.00 0.00 5.68
26 27 3.127533 CCTGCTGCCCTTGTACGC 61.128 66.667 0.00 0.00 0.00 4.42
27 28 3.127533 GCCTGCTGCCCTTGTACG 61.128 66.667 0.00 0.00 0.00 3.67
28 29 3.127533 CGCCTGCTGCCCTTGTAC 61.128 66.667 0.00 0.00 36.24 2.90
29 30 4.408821 CCGCCTGCTGCCCTTGTA 62.409 66.667 0.00 0.00 36.24 2.41
51 52 4.637489 CTCGCGGCCGATCTCCTG 62.637 72.222 33.48 8.57 43.47 3.86
93 94 4.618489 GCAATTAACAGCTTGCAGTAACTG 59.382 41.667 6.63 5.98 45.50 3.16
94 95 4.798574 GCAATTAACAGCTTGCAGTAACT 58.201 39.130 6.63 0.00 45.50 2.24
101 102 1.978782 GTCGTGCAATTAACAGCTTGC 59.021 47.619 4.85 4.85 46.19 4.01
102 103 2.096466 TCGTCGTGCAATTAACAGCTTG 60.096 45.455 0.00 0.00 0.00 4.01
103 104 2.139917 TCGTCGTGCAATTAACAGCTT 58.860 42.857 0.00 0.00 0.00 3.74
104 105 1.790755 TCGTCGTGCAATTAACAGCT 58.209 45.000 0.00 0.00 0.00 4.24
105 106 2.806288 ATCGTCGTGCAATTAACAGC 57.194 45.000 0.00 0.00 0.00 4.40
106 107 3.301579 CCGTATCGTCGTGCAATTAACAG 60.302 47.826 0.00 0.00 0.00 3.16
107 108 2.599527 CCGTATCGTCGTGCAATTAACA 59.400 45.455 0.00 0.00 0.00 2.41
108 109 2.595881 GCCGTATCGTCGTGCAATTAAC 60.596 50.000 0.00 0.00 0.00 2.01
109 110 1.589320 GCCGTATCGTCGTGCAATTAA 59.411 47.619 0.00 0.00 0.00 1.40
110 111 1.202203 GCCGTATCGTCGTGCAATTA 58.798 50.000 0.00 0.00 0.00 1.40
111 112 1.426041 GGCCGTATCGTCGTGCAATT 61.426 55.000 0.00 0.00 0.00 2.32
112 113 1.881252 GGCCGTATCGTCGTGCAAT 60.881 57.895 0.00 0.00 0.00 3.56
113 114 2.507547 GGCCGTATCGTCGTGCAA 60.508 61.111 0.00 0.00 0.00 4.08
114 115 4.840288 CGGCCGTATCGTCGTGCA 62.840 66.667 19.50 0.00 0.00 4.57
115 116 4.842091 ACGGCCGTATCGTCGTGC 62.842 66.667 33.34 0.00 35.87 5.34
116 117 2.649975 GACGGCCGTATCGTCGTG 60.650 66.667 34.36 0.00 45.53 4.35
120 121 4.183686 CGTGGACGGCCGTATCGT 62.184 66.667 34.36 8.19 44.03 3.73
131 132 4.595538 TGTGGACGTGGCGTGGAC 62.596 66.667 0.00 0.00 41.37 4.02
132 133 4.595538 GTGTGGACGTGGCGTGGA 62.596 66.667 0.00 0.00 41.37 4.02
142 143 4.747529 GGGGGCGTACGTGTGGAC 62.748 72.222 17.90 0.00 0.00 4.02
163 164 3.337301 TTTAAAAAGTCGGCGTTGACC 57.663 42.857 6.85 0.00 39.77 4.02
164 165 6.973006 TTATTTTAAAAAGTCGGCGTTGAC 57.027 33.333 6.85 0.00 39.21 3.18
165 166 7.487189 TGTTTTATTTTAAAAAGTCGGCGTTGA 59.513 29.630 6.85 0.00 0.00 3.18
166 167 7.576248 GTGTTTTATTTTAAAAAGTCGGCGTTG 59.424 33.333 6.85 0.00 0.00 4.10
167 168 7.513350 CGTGTTTTATTTTAAAAAGTCGGCGTT 60.513 33.333 6.85 0.00 0.00 4.84
168 169 6.075467 CGTGTTTTATTTTAAAAAGTCGGCGT 60.075 34.615 6.85 0.00 0.00 5.68
169 170 6.275945 CGTGTTTTATTTTAAAAAGTCGGCG 58.724 36.000 4.44 0.00 0.00 6.46
170 171 6.060150 GCGTGTTTTATTTTAAAAAGTCGGC 58.940 36.000 4.44 0.00 31.90 5.54
171 172 6.345961 GGGCGTGTTTTATTTTAAAAAGTCGG 60.346 38.462 4.44 0.00 31.90 4.79
172 173 6.418523 AGGGCGTGTTTTATTTTAAAAAGTCG 59.581 34.615 4.44 5.07 33.13 4.18
173 174 7.560700 CAGGGCGTGTTTTATTTTAAAAAGTC 58.439 34.615 4.44 0.00 0.00 3.01
174 175 6.018588 GCAGGGCGTGTTTTATTTTAAAAAGT 60.019 34.615 4.44 0.00 0.00 2.66
175 176 6.018669 TGCAGGGCGTGTTTTATTTTAAAAAG 60.019 34.615 4.44 0.00 0.00 2.27
176 177 5.815740 TGCAGGGCGTGTTTTATTTTAAAAA 59.184 32.000 4.44 0.00 0.00 1.94
177 178 5.357257 TGCAGGGCGTGTTTTATTTTAAAA 58.643 33.333 9.16 2.51 0.00 1.52
178 179 4.945246 TGCAGGGCGTGTTTTATTTTAAA 58.055 34.783 9.16 0.00 0.00 1.52
179 180 4.585955 TGCAGGGCGTGTTTTATTTTAA 57.414 36.364 9.16 0.00 0.00 1.52
180 181 4.461081 AGATGCAGGGCGTGTTTTATTTTA 59.539 37.500 9.16 0.00 0.00 1.52
181 182 3.258123 AGATGCAGGGCGTGTTTTATTTT 59.742 39.130 9.16 0.00 0.00 1.82
182 183 2.825532 AGATGCAGGGCGTGTTTTATTT 59.174 40.909 9.16 0.00 0.00 1.40
183 184 2.164219 CAGATGCAGGGCGTGTTTTATT 59.836 45.455 9.16 0.00 0.00 1.40
184 185 1.745087 CAGATGCAGGGCGTGTTTTAT 59.255 47.619 9.16 0.00 0.00 1.40
185 186 1.164411 CAGATGCAGGGCGTGTTTTA 58.836 50.000 9.16 0.00 0.00 1.52
186 187 0.537143 TCAGATGCAGGGCGTGTTTT 60.537 50.000 9.16 0.00 0.00 2.43
187 188 1.073025 TCAGATGCAGGGCGTGTTT 59.927 52.632 9.16 0.00 0.00 2.83
188 189 1.672356 GTCAGATGCAGGGCGTGTT 60.672 57.895 9.16 0.00 0.00 3.32
189 190 2.046892 GTCAGATGCAGGGCGTGT 60.047 61.111 9.16 0.00 0.00 4.49
190 191 0.179076 TATGTCAGATGCAGGGCGTG 60.179 55.000 2.14 2.14 0.00 5.34
191 192 0.179073 GTATGTCAGATGCAGGGCGT 60.179 55.000 0.00 0.00 0.00 5.68
192 193 0.105593 AGTATGTCAGATGCAGGGCG 59.894 55.000 0.00 0.00 0.00 6.13
193 194 1.590932 CAGTATGTCAGATGCAGGGC 58.409 55.000 0.00 0.00 0.00 5.19
194 195 1.202734 CCCAGTATGTCAGATGCAGGG 60.203 57.143 0.00 0.00 0.00 4.45
195 196 1.813092 GCCCAGTATGTCAGATGCAGG 60.813 57.143 0.00 0.00 0.00 4.85
196 197 1.590932 GCCCAGTATGTCAGATGCAG 58.409 55.000 0.00 0.00 0.00 4.41
197 198 0.181114 GGCCCAGTATGTCAGATGCA 59.819 55.000 0.00 0.00 0.00 3.96
198 199 0.536006 GGGCCCAGTATGTCAGATGC 60.536 60.000 19.95 0.00 0.00 3.91
199 200 0.839277 TGGGCCCAGTATGTCAGATG 59.161 55.000 24.45 0.00 0.00 2.90
200 201 1.422781 CATGGGCCCAGTATGTCAGAT 59.577 52.381 31.97 5.90 0.00 2.90
201 202 0.839277 CATGGGCCCAGTATGTCAGA 59.161 55.000 31.97 1.14 0.00 3.27
202 203 0.179009 CCATGGGCCCAGTATGTCAG 60.179 60.000 31.97 11.42 0.00 3.51
203 204 0.623031 TCCATGGGCCCAGTATGTCA 60.623 55.000 31.97 9.54 0.00 3.58
204 205 0.773644 ATCCATGGGCCCAGTATGTC 59.226 55.000 31.97 0.00 0.00 3.06
205 206 0.479815 CATCCATGGGCCCAGTATGT 59.520 55.000 31.97 10.39 0.00 2.29
206 207 0.896940 GCATCCATGGGCCCAGTATG 60.897 60.000 31.97 29.35 0.00 2.39
207 208 1.070127 AGCATCCATGGGCCCAGTAT 61.070 55.000 31.97 19.73 0.00 2.12
208 209 0.401250 TAGCATCCATGGGCCCAGTA 60.401 55.000 31.97 18.23 0.00 2.74
209 210 1.288508 TTAGCATCCATGGGCCCAGT 61.289 55.000 31.97 15.73 0.00 4.00
210 211 0.825010 GTTAGCATCCATGGGCCCAG 60.825 60.000 31.97 21.15 0.00 4.45
211 212 1.229927 GTTAGCATCCATGGGCCCA 59.770 57.895 30.92 30.92 0.00 5.36
212 213 0.825010 CAGTTAGCATCCATGGGCCC 60.825 60.000 17.59 17.59 0.00 5.80
213 214 1.458639 GCAGTTAGCATCCATGGGCC 61.459 60.000 13.02 0.00 44.79 5.80
214 215 2.036236 GCAGTTAGCATCCATGGGC 58.964 57.895 13.02 8.54 44.79 5.36
224 225 2.787915 GCGAGCCAAGCAGTTAGC 59.212 61.111 0.00 0.00 46.19 3.09
225 226 1.687494 GACGCGAGCCAAGCAGTTAG 61.687 60.000 15.93 0.00 34.19 2.34
226 227 1.736645 GACGCGAGCCAAGCAGTTA 60.737 57.895 15.93 0.00 34.19 2.24
227 228 3.044305 GACGCGAGCCAAGCAGTT 61.044 61.111 15.93 0.00 34.19 3.16
229 230 4.749310 AGGACGCGAGCCAAGCAG 62.749 66.667 15.93 0.00 34.19 4.24
230 231 4.742201 GAGGACGCGAGCCAAGCA 62.742 66.667 15.93 0.00 34.19 3.91
231 232 4.742201 TGAGGACGCGAGCCAAGC 62.742 66.667 15.93 8.09 0.00 4.01
232 233 2.811317 GTGAGGACGCGAGCCAAG 60.811 66.667 15.93 0.00 0.00 3.61
262 263 4.803426 CTGTGGGACGAGCCGAGC 62.803 72.222 1.50 0.00 37.63 5.03
263 264 4.803426 GCTGTGGGACGAGCCGAG 62.803 72.222 1.50 0.00 37.63 4.63
269 270 2.570774 TATACGGGGCTGTGGGACGA 62.571 60.000 0.00 0.00 0.00 4.20
270 271 2.129146 TATACGGGGCTGTGGGACG 61.129 63.158 0.00 0.00 0.00 4.79
271 272 1.332144 TGTATACGGGGCTGTGGGAC 61.332 60.000 0.00 0.00 0.00 4.46
272 273 1.001888 TGTATACGGGGCTGTGGGA 59.998 57.895 0.00 0.00 0.00 4.37
273 274 1.145377 GTGTATACGGGGCTGTGGG 59.855 63.158 0.00 0.00 0.00 4.61
274 275 0.179084 CTGTGTATACGGGGCTGTGG 60.179 60.000 0.00 0.00 0.00 4.17
275 276 3.362581 CTGTGTATACGGGGCTGTG 57.637 57.895 0.00 0.00 0.00 3.66
282 283 2.228241 CGCGTGCCTGTGTATACGG 61.228 63.158 0.00 0.00 37.06 4.02
283 284 2.228241 CCGCGTGCCTGTGTATACG 61.228 63.158 4.92 0.00 39.37 3.06
284 285 1.881252 CCCGCGTGCCTGTGTATAC 60.881 63.158 4.92 0.00 0.00 1.47
285 286 2.497293 CCCGCGTGCCTGTGTATA 59.503 61.111 4.92 0.00 0.00 1.47
286 287 4.467084 CCCCGCGTGCCTGTGTAT 62.467 66.667 4.92 0.00 0.00 2.29
289 290 4.467084 ATACCCCGCGTGCCTGTG 62.467 66.667 4.92 0.00 0.00 3.66
290 291 4.157120 GATACCCCGCGTGCCTGT 62.157 66.667 4.92 0.00 0.00 4.00
299 300 4.580551 GTCCACGCCGATACCCCG 62.581 72.222 0.00 0.00 0.00 5.73
300 301 4.580551 CGTCCACGCCGATACCCC 62.581 72.222 0.00 0.00 0.00 4.95
335 336 4.330620 GGGCACGATCGTCTTATGTAAAAA 59.669 41.667 19.84 0.00 0.00 1.94
336 337 3.866910 GGGCACGATCGTCTTATGTAAAA 59.133 43.478 19.84 0.00 0.00 1.52
337 338 3.450578 GGGCACGATCGTCTTATGTAAA 58.549 45.455 19.84 0.00 0.00 2.01
338 339 2.223876 GGGGCACGATCGTCTTATGTAA 60.224 50.000 19.84 0.00 0.00 2.41
339 340 1.338973 GGGGCACGATCGTCTTATGTA 59.661 52.381 19.84 0.00 0.00 2.29
340 341 0.104304 GGGGCACGATCGTCTTATGT 59.896 55.000 19.84 0.00 0.00 2.29
341 342 0.389391 AGGGGCACGATCGTCTTATG 59.611 55.000 19.84 8.12 0.00 1.90
342 343 0.389391 CAGGGGCACGATCGTCTTAT 59.611 55.000 19.84 0.38 0.00 1.73
343 344 0.681887 TCAGGGGCACGATCGTCTTA 60.682 55.000 19.84 0.81 0.00 2.10
344 345 1.982395 TCAGGGGCACGATCGTCTT 60.982 57.895 19.84 0.30 0.00 3.01
345 346 2.362503 TCAGGGGCACGATCGTCT 60.363 61.111 19.84 9.74 0.00 4.18
346 347 2.202756 GTCAGGGGCACGATCGTC 60.203 66.667 19.84 13.04 0.00 4.20
347 348 2.579657 TTGTCAGGGGCACGATCGT 61.580 57.895 16.60 16.60 0.00 3.73
348 349 2.100631 GTTGTCAGGGGCACGATCG 61.101 63.158 14.88 14.88 0.00 3.69
349 350 2.100631 CGTTGTCAGGGGCACGATC 61.101 63.158 0.00 0.00 0.00 3.69
350 351 2.047274 CGTTGTCAGGGGCACGAT 60.047 61.111 0.00 0.00 0.00 3.73
351 352 2.709125 CTTCGTTGTCAGGGGCACGA 62.709 60.000 0.00 0.00 0.00 4.35
352 353 2.280524 TTCGTTGTCAGGGGCACG 60.281 61.111 0.00 0.00 0.00 5.34
353 354 1.966451 CCTTCGTTGTCAGGGGCAC 60.966 63.158 0.00 0.00 0.00 5.01
354 355 2.429930 CCTTCGTTGTCAGGGGCA 59.570 61.111 0.00 0.00 0.00 5.36
355 356 2.359975 CCCTTCGTTGTCAGGGGC 60.360 66.667 0.00 0.00 45.75 5.80
358 359 1.406887 CCATACCCCTTCGTTGTCAGG 60.407 57.143 0.00 0.00 0.00 3.86
359 360 1.553248 TCCATACCCCTTCGTTGTCAG 59.447 52.381 0.00 0.00 0.00 3.51
360 361 1.276989 GTCCATACCCCTTCGTTGTCA 59.723 52.381 0.00 0.00 0.00 3.58
361 362 1.738030 CGTCCATACCCCTTCGTTGTC 60.738 57.143 0.00 0.00 0.00 3.18
362 363 0.248289 CGTCCATACCCCTTCGTTGT 59.752 55.000 0.00 0.00 0.00 3.32
363 364 0.533491 TCGTCCATACCCCTTCGTTG 59.467 55.000 0.00 0.00 0.00 4.10
364 365 1.269012 TTCGTCCATACCCCTTCGTT 58.731 50.000 0.00 0.00 0.00 3.85
365 366 1.411612 GATTCGTCCATACCCCTTCGT 59.588 52.381 0.00 0.00 0.00 3.85
366 367 1.687123 AGATTCGTCCATACCCCTTCG 59.313 52.381 0.00 0.00 0.00 3.79
367 368 2.698797 TGAGATTCGTCCATACCCCTTC 59.301 50.000 0.00 0.00 0.00 3.46
368 369 2.759355 TGAGATTCGTCCATACCCCTT 58.241 47.619 0.00 0.00 0.00 3.95
369 370 2.471815 TGAGATTCGTCCATACCCCT 57.528 50.000 0.00 0.00 0.00 4.79
370 371 3.320673 GATGAGATTCGTCCATACCCC 57.679 52.381 0.00 0.00 0.00 4.95
388 389 4.292306 ACCCTCTTAAACACATCAAGGGAT 59.708 41.667 11.37 0.00 43.93 3.85
389 390 3.655777 ACCCTCTTAAACACATCAAGGGA 59.344 43.478 11.37 0.00 43.93 4.20
390 391 3.758554 CACCCTCTTAAACACATCAAGGG 59.241 47.826 3.01 3.01 46.13 3.95
391 392 4.398319 ACACCCTCTTAAACACATCAAGG 58.602 43.478 0.00 0.00 0.00 3.61
392 393 6.231211 AGTACACCCTCTTAAACACATCAAG 58.769 40.000 0.00 0.00 0.00 3.02
393 394 6.182507 AGTACACCCTCTTAAACACATCAA 57.817 37.500 0.00 0.00 0.00 2.57
394 395 5.305902 TGAGTACACCCTCTTAAACACATCA 59.694 40.000 0.00 0.00 32.50 3.07
395 396 5.790593 TGAGTACACCCTCTTAAACACATC 58.209 41.667 0.00 0.00 32.50 3.06
396 397 5.818678 TGAGTACACCCTCTTAAACACAT 57.181 39.130 0.00 0.00 32.50 3.21
397 398 5.607477 CTTGAGTACACCCTCTTAAACACA 58.393 41.667 0.00 0.00 32.50 3.72
398 399 4.451435 GCTTGAGTACACCCTCTTAAACAC 59.549 45.833 0.00 0.00 32.50 3.32
399 400 4.101898 TGCTTGAGTACACCCTCTTAAACA 59.898 41.667 0.00 0.00 32.50 2.83
400 401 4.638304 TGCTTGAGTACACCCTCTTAAAC 58.362 43.478 0.00 0.00 32.50 2.01
401 402 4.591498 TCTGCTTGAGTACACCCTCTTAAA 59.409 41.667 0.00 0.00 32.50 1.52
402 403 4.157246 TCTGCTTGAGTACACCCTCTTAA 58.843 43.478 0.00 0.00 32.50 1.85
403 404 3.774734 TCTGCTTGAGTACACCCTCTTA 58.225 45.455 0.00 0.00 32.50 2.10
404 405 2.609747 TCTGCTTGAGTACACCCTCTT 58.390 47.619 0.00 0.00 32.50 2.85
405 406 2.310779 TCTGCTTGAGTACACCCTCT 57.689 50.000 0.00 0.00 32.50 3.69
406 407 2.300437 ACTTCTGCTTGAGTACACCCTC 59.700 50.000 0.00 0.00 0.00 4.30
407 408 2.330216 ACTTCTGCTTGAGTACACCCT 58.670 47.619 0.00 0.00 0.00 4.34
408 409 2.841442 ACTTCTGCTTGAGTACACCC 57.159 50.000 0.00 0.00 0.00 4.61
409 410 5.135508 TCTTACTTCTGCTTGAGTACACC 57.864 43.478 0.00 0.00 0.00 4.16
410 411 7.438459 TCTTTTCTTACTTCTGCTTGAGTACAC 59.562 37.037 0.00 0.00 0.00 2.90
411 412 7.497595 TCTTTTCTTACTTCTGCTTGAGTACA 58.502 34.615 0.00 0.00 0.00 2.90
412 413 7.948278 TCTTTTCTTACTTCTGCTTGAGTAC 57.052 36.000 0.00 0.00 0.00 2.73
413 414 8.958119 TTTCTTTTCTTACTTCTGCTTGAGTA 57.042 30.769 0.00 0.00 0.00 2.59
414 415 7.865706 TTTCTTTTCTTACTTCTGCTTGAGT 57.134 32.000 0.00 0.00 0.00 3.41
415 416 7.859875 CCTTTTCTTTTCTTACTTCTGCTTGAG 59.140 37.037 0.00 0.00 0.00 3.02
416 417 7.556275 TCCTTTTCTTTTCTTACTTCTGCTTGA 59.444 33.333 0.00 0.00 0.00 3.02
417 418 7.645735 GTCCTTTTCTTTTCTTACTTCTGCTTG 59.354 37.037 0.00 0.00 0.00 4.01
418 419 7.467403 CGTCCTTTTCTTTTCTTACTTCTGCTT 60.467 37.037 0.00 0.00 0.00 3.91
419 420 6.017852 CGTCCTTTTCTTTTCTTACTTCTGCT 60.018 38.462 0.00 0.00 0.00 4.24
420 421 6.136743 CGTCCTTTTCTTTTCTTACTTCTGC 58.863 40.000 0.00 0.00 0.00 4.26
421 422 7.247929 ACGTCCTTTTCTTTTCTTACTTCTG 57.752 36.000 0.00 0.00 0.00 3.02
422 423 7.551617 TGAACGTCCTTTTCTTTTCTTACTTCT 59.448 33.333 0.00 0.00 0.00 2.85
423 424 7.639072 GTGAACGTCCTTTTCTTTTCTTACTTC 59.361 37.037 0.00 0.00 0.00 3.01
424 425 7.120138 TGTGAACGTCCTTTTCTTTTCTTACTT 59.880 33.333 0.00 0.00 0.00 2.24
425 426 6.596497 TGTGAACGTCCTTTTCTTTTCTTACT 59.404 34.615 0.00 0.00 0.00 2.24
426 427 6.778108 TGTGAACGTCCTTTTCTTTTCTTAC 58.222 36.000 0.00 0.00 0.00 2.34
427 428 6.988622 TGTGAACGTCCTTTTCTTTTCTTA 57.011 33.333 0.00 0.00 0.00 2.10
428 429 5.890424 TGTGAACGTCCTTTTCTTTTCTT 57.110 34.783 0.00 0.00 0.00 2.52
453 454 1.671979 CGTGATGGTGGCTCATGATT 58.328 50.000 0.00 0.00 32.46 2.57
484 485 1.524621 CCGTGATGATGGGGACTGC 60.525 63.158 0.00 0.00 0.00 4.40
626 628 1.953686 TGCTTTAGTTGGGCACTGTTC 59.046 47.619 0.00 0.00 35.97 3.18
651 654 2.677979 GGCCGGTTTCTTCGTGAGC 61.678 63.158 1.90 0.00 0.00 4.26
655 658 1.792118 GCTTTGGCCGGTTTCTTCGT 61.792 55.000 1.90 0.00 0.00 3.85
715 718 3.568853 GCTCCGAGTTGGCTACTATTCTA 59.431 47.826 0.53 0.00 37.17 2.10
826 830 3.137459 AGCTCCACTCTCGGCGAG 61.137 66.667 30.10 30.10 45.56 5.03
912 923 1.550524 CGAGAGGGAAACATCACTGGA 59.449 52.381 0.00 0.00 45.49 3.86
960 971 2.824041 CCGAATCTTGGTGCCGGG 60.824 66.667 2.18 0.00 36.81 5.73
981 992 2.357034 GCCGACCGTCTTGCTTCA 60.357 61.111 0.00 0.00 0.00 3.02
988 999 3.254024 AAGCCATTGCCGACCGTCT 62.254 57.895 0.00 0.00 38.69 4.18
1043 1054 1.220236 CATCCTTCTCCTCCTCCTCCT 59.780 57.143 0.00 0.00 0.00 3.69
1045 1056 1.062505 ACCATCCTTCTCCTCCTCCTC 60.063 57.143 0.00 0.00 0.00 3.71
1303 1314 1.188871 TGGGTCGACTGGTACATGCA 61.189 55.000 16.46 0.00 38.20 3.96
1329 1340 6.073927 CATGATCGATGATTGACGAAGTGATT 60.074 38.462 0.54 0.00 41.65 2.57
1348 1359 4.024809 CACAGCATCATCAGTCACATGATC 60.025 45.833 0.00 0.00 38.67 2.92
1410 1424 0.820226 CTCTCCATCTCGTCCAGCAA 59.180 55.000 0.00 0.00 0.00 3.91
1532 1546 2.271940 CCAGTCGAGCTTCTGGTCT 58.728 57.895 18.99 0.00 44.19 3.85
2075 2089 2.361992 TCGGCAACTAGCTCCGGA 60.362 61.111 2.93 2.93 44.79 5.14
2345 2359 1.201414 GTTGCTTGGTTACCCATTCCG 59.799 52.381 0.00 0.00 41.49 4.30
2358 2372 5.686159 TTTAATTGGCCAATTGTTGCTTG 57.314 34.783 41.35 0.00 40.83 4.01
2489 2503 5.239351 TGCTTTTCAATTGTCAATGGATGG 58.761 37.500 5.13 0.00 0.00 3.51
2490 2504 6.090358 GTCTGCTTTTCAATTGTCAATGGATG 59.910 38.462 5.13 0.00 0.00 3.51
2513 2528 5.128827 TCCTAGTGATGGATGGTAAAGTGTC 59.871 44.000 0.00 0.00 0.00 3.67
2547 2562 1.244019 ATGCCTTGTTTCTCACCGCC 61.244 55.000 0.00 0.00 0.00 6.13
2566 2581 2.300956 TGCTTAGCCCATGGTTTTCA 57.699 45.000 11.73 0.00 0.00 2.69
2641 2656 0.244721 TGATCCTCGCAGCATATCCG 59.755 55.000 0.00 0.00 0.00 4.18
2731 2746 5.034152 CGCCGTAATTGTTTGCATTTCTAT 58.966 37.500 0.00 0.00 0.00 1.98
2767 2783 2.351157 GCTAAGGTTGCAAGTTGCTCTG 60.351 50.000 27.17 12.38 45.31 3.35
2787 2803 3.733443 ATTCCAGGTCAAGTTTGTTGC 57.267 42.857 0.00 0.00 0.00 4.17
2809 2825 5.188327 TGTGTTTTGGATGCGTTTTCATA 57.812 34.783 0.00 0.00 0.00 2.15
2824 2840 6.438763 GCTTGATGCTACTTTACTGTGTTTT 58.561 36.000 0.00 0.00 38.95 2.43
2875 2892 1.337110 GCTTCCGATGTTGCGTTTGC 61.337 55.000 0.00 0.00 43.20 3.68
2876 2893 0.040514 TGCTTCCGATGTTGCGTTTG 60.041 50.000 0.00 0.00 0.00 2.93
2877 2894 0.040425 GTGCTTCCGATGTTGCGTTT 60.040 50.000 0.00 0.00 0.00 3.60
2878 2895 1.163420 TGTGCTTCCGATGTTGCGTT 61.163 50.000 0.00 0.00 0.00 4.84
2879 2896 1.596752 TGTGCTTCCGATGTTGCGT 60.597 52.632 0.00 0.00 0.00 5.24
2880 2897 1.154413 GTGTGCTTCCGATGTTGCG 60.154 57.895 0.00 0.00 0.00 4.85
2881 2898 0.310543 TTGTGTGCTTCCGATGTTGC 59.689 50.000 0.00 0.00 0.00 4.17
2882 2899 2.772568 TTTGTGTGCTTCCGATGTTG 57.227 45.000 0.00 0.00 0.00 3.33
2883 2900 2.622942 ACATTTGTGTGCTTCCGATGTT 59.377 40.909 0.00 0.00 0.00 2.71
2884 2901 2.229792 ACATTTGTGTGCTTCCGATGT 58.770 42.857 0.00 0.00 0.00 3.06
2885 2902 2.995466 ACATTTGTGTGCTTCCGATG 57.005 45.000 0.00 0.00 0.00 3.84
2886 2903 3.407698 TGTACATTTGTGTGCTTCCGAT 58.592 40.909 0.00 0.00 0.00 4.18
2887 2904 2.839975 TGTACATTTGTGTGCTTCCGA 58.160 42.857 0.00 0.00 0.00 4.55
2888 2905 3.617540 TTGTACATTTGTGTGCTTCCG 57.382 42.857 0.00 0.00 0.00 4.30
2889 2906 6.039616 TCTTTTTGTACATTTGTGTGCTTCC 58.960 36.000 0.00 0.00 0.00 3.46
2890 2907 6.751888 ACTCTTTTTGTACATTTGTGTGCTTC 59.248 34.615 0.00 0.00 0.00 3.86
2891 2908 6.630071 ACTCTTTTTGTACATTTGTGTGCTT 58.370 32.000 0.00 0.00 0.00 3.91
2892 2909 6.207691 ACTCTTTTTGTACATTTGTGTGCT 57.792 33.333 0.00 0.00 0.00 4.40
2893 2910 6.885735 AACTCTTTTTGTACATTTGTGTGC 57.114 33.333 0.00 0.00 0.00 4.57
2918 2935 9.778741 CTCTCTGTGGCCACTTTATATTTATTA 57.221 33.333 34.75 10.35 0.00 0.98
2919 2936 8.275040 ACTCTCTGTGGCCACTTTATATTTATT 58.725 33.333 34.75 6.95 0.00 1.40
2920 2937 7.806180 ACTCTCTGTGGCCACTTTATATTTAT 58.194 34.615 34.75 9.44 0.00 1.40
2921 2938 7.195374 ACTCTCTGTGGCCACTTTATATTTA 57.805 36.000 34.75 11.86 0.00 1.40
2922 2939 6.067217 ACTCTCTGTGGCCACTTTATATTT 57.933 37.500 34.75 11.05 0.00 1.40
2923 2940 5.700402 ACTCTCTGTGGCCACTTTATATT 57.300 39.130 34.75 12.39 0.00 1.28
2924 2941 5.700402 AACTCTCTGTGGCCACTTTATAT 57.300 39.130 34.75 15.03 0.00 0.86
2925 2942 6.808321 ATAACTCTCTGTGGCCACTTTATA 57.192 37.500 34.75 18.52 0.00 0.98
2926 2943 5.700402 ATAACTCTCTGTGGCCACTTTAT 57.300 39.130 34.75 21.68 0.00 1.40
2927 2944 5.499004 AATAACTCTCTGTGGCCACTTTA 57.501 39.130 34.75 20.63 0.00 1.85
2928 2945 4.373156 AATAACTCTCTGTGGCCACTTT 57.627 40.909 34.75 19.35 0.00 2.66
2929 2946 4.373156 AAATAACTCTCTGTGGCCACTT 57.627 40.909 34.75 21.97 0.00 3.16
2930 2947 4.373156 AAAATAACTCTCTGTGGCCACT 57.627 40.909 34.75 16.58 0.00 4.00
2931 2948 4.798574 CAAAAATAACTCTCTGTGGCCAC 58.201 43.478 29.67 29.67 0.00 5.01
2932 2949 3.255642 GCAAAAATAACTCTCTGTGGCCA 59.744 43.478 0.00 0.00 0.00 5.36
2933 2950 3.255642 TGCAAAAATAACTCTCTGTGGCC 59.744 43.478 0.00 0.00 0.00 5.36
2934 2951 4.503741 TGCAAAAATAACTCTCTGTGGC 57.496 40.909 0.00 0.00 0.00 5.01
2935 2952 5.327091 CGATGCAAAAATAACTCTCTGTGG 58.673 41.667 0.00 0.00 0.00 4.17
2936 2953 5.122239 TCCGATGCAAAAATAACTCTCTGTG 59.878 40.000 0.00 0.00 0.00 3.66
2937 2954 5.245531 TCCGATGCAAAAATAACTCTCTGT 58.754 37.500 0.00 0.00 0.00 3.41
2938 2955 5.801350 TCCGATGCAAAAATAACTCTCTG 57.199 39.130 0.00 0.00 0.00 3.35
2939 2956 5.123979 GGTTCCGATGCAAAAATAACTCTCT 59.876 40.000 0.00 0.00 0.00 3.10
2940 2957 5.106317 TGGTTCCGATGCAAAAATAACTCTC 60.106 40.000 0.00 0.00 0.00 3.20
2941 2958 4.764823 TGGTTCCGATGCAAAAATAACTCT 59.235 37.500 0.00 0.00 0.00 3.24
2942 2959 5.054390 TGGTTCCGATGCAAAAATAACTC 57.946 39.130 0.00 0.00 0.00 3.01
2943 2960 5.184864 TGATGGTTCCGATGCAAAAATAACT 59.815 36.000 0.00 0.00 0.00 2.24
2944 2961 5.406649 TGATGGTTCCGATGCAAAAATAAC 58.593 37.500 0.00 0.00 0.00 1.89
2945 2962 5.651387 TGATGGTTCCGATGCAAAAATAA 57.349 34.783 0.00 0.00 0.00 1.40
2946 2963 5.406649 GTTGATGGTTCCGATGCAAAAATA 58.593 37.500 0.00 0.00 0.00 1.40
2947 2964 4.244862 GTTGATGGTTCCGATGCAAAAAT 58.755 39.130 0.00 0.00 0.00 1.82
2948 2965 3.648009 GTTGATGGTTCCGATGCAAAAA 58.352 40.909 0.00 0.00 0.00 1.94
2949 2966 2.351253 CGTTGATGGTTCCGATGCAAAA 60.351 45.455 0.00 0.00 0.00 2.44
2950 2967 1.198867 CGTTGATGGTTCCGATGCAAA 59.801 47.619 0.00 0.00 0.00 3.68
2951 2968 0.801872 CGTTGATGGTTCCGATGCAA 59.198 50.000 0.00 0.00 0.00 4.08
2952 2969 1.643868 GCGTTGATGGTTCCGATGCA 61.644 55.000 0.00 0.00 0.00 3.96
2953 2970 1.062525 GCGTTGATGGTTCCGATGC 59.937 57.895 0.00 0.00 0.00 3.91
2954 2971 1.086696 AAGCGTTGATGGTTCCGATG 58.913 50.000 0.00 0.00 0.00 3.84
2955 2972 1.737793 GAAAGCGTTGATGGTTCCGAT 59.262 47.619 0.00 0.00 0.00 4.18
2956 2973 1.153353 GAAAGCGTTGATGGTTCCGA 58.847 50.000 0.00 0.00 0.00 4.55
2957 2974 1.156736 AGAAAGCGTTGATGGTTCCG 58.843 50.000 0.00 0.00 0.00 4.30
2958 2975 3.071479 TGTAGAAAGCGTTGATGGTTCC 58.929 45.455 0.00 0.00 0.00 3.62
2959 2976 3.120304 GGTGTAGAAAGCGTTGATGGTTC 60.120 47.826 0.00 0.00 0.00 3.62
2960 2977 2.812011 GGTGTAGAAAGCGTTGATGGTT 59.188 45.455 0.00 0.00 0.00 3.67
2961 2978 2.423577 GGTGTAGAAAGCGTTGATGGT 58.576 47.619 0.00 0.00 0.00 3.55
2962 2979 1.737793 GGGTGTAGAAAGCGTTGATGG 59.262 52.381 0.00 0.00 0.00 3.51
2963 2980 2.422597 TGGGTGTAGAAAGCGTTGATG 58.577 47.619 0.00 0.00 0.00 3.07
2964 2981 2.851263 TGGGTGTAGAAAGCGTTGAT 57.149 45.000 0.00 0.00 0.00 2.57
2965 2982 2.422597 CATGGGTGTAGAAAGCGTTGA 58.577 47.619 0.00 0.00 0.00 3.18
2966 2983 1.135689 GCATGGGTGTAGAAAGCGTTG 60.136 52.381 0.00 0.00 0.00 4.10
2967 2984 1.165270 GCATGGGTGTAGAAAGCGTT 58.835 50.000 0.00 0.00 0.00 4.84
2968 2985 0.324943 AGCATGGGTGTAGAAAGCGT 59.675 50.000 0.00 0.00 0.00 5.07
2969 2986 1.933853 GTAGCATGGGTGTAGAAAGCG 59.066 52.381 0.00 0.00 0.00 4.68
2970 2987 2.678336 GTGTAGCATGGGTGTAGAAAGC 59.322 50.000 0.00 0.00 0.00 3.51
2971 2988 3.937814 TGTGTAGCATGGGTGTAGAAAG 58.062 45.455 0.00 0.00 0.00 2.62
2972 2989 4.359434 TTGTGTAGCATGGGTGTAGAAA 57.641 40.909 0.00 0.00 0.00 2.52
2973 2990 4.069304 GTTTGTGTAGCATGGGTGTAGAA 58.931 43.478 0.00 0.00 0.00 2.10
2974 2991 3.326588 AGTTTGTGTAGCATGGGTGTAGA 59.673 43.478 0.00 0.00 0.00 2.59
2975 2992 3.674997 AGTTTGTGTAGCATGGGTGTAG 58.325 45.455 0.00 0.00 0.00 2.74
2976 2993 3.780804 AGTTTGTGTAGCATGGGTGTA 57.219 42.857 0.00 0.00 0.00 2.90
2977 2994 2.622942 CAAGTTTGTGTAGCATGGGTGT 59.377 45.455 0.00 0.00 0.00 4.16
2978 2995 2.607771 GCAAGTTTGTGTAGCATGGGTG 60.608 50.000 0.00 0.00 0.00 4.61
2979 2996 1.613437 GCAAGTTTGTGTAGCATGGGT 59.387 47.619 0.00 0.00 0.00 4.51
2980 2997 1.612950 TGCAAGTTTGTGTAGCATGGG 59.387 47.619 0.00 0.00 0.00 4.00
2981 2998 2.664916 GTGCAAGTTTGTGTAGCATGG 58.335 47.619 0.00 0.00 37.56 3.66
2982 2999 2.032117 TCGTGCAAGTTTGTGTAGCATG 60.032 45.455 0.00 0.00 42.08 4.06
2983 3000 2.217750 TCGTGCAAGTTTGTGTAGCAT 58.782 42.857 0.00 0.00 37.56 3.79
2984 3001 1.657822 TCGTGCAAGTTTGTGTAGCA 58.342 45.000 0.00 0.00 0.00 3.49
2985 3002 2.574322 CATCGTGCAAGTTTGTGTAGC 58.426 47.619 0.00 0.00 0.00 3.58
2986 3003 2.665519 GCCATCGTGCAAGTTTGTGTAG 60.666 50.000 0.00 0.00 0.00 2.74
2987 3004 1.265635 GCCATCGTGCAAGTTTGTGTA 59.734 47.619 0.00 0.00 0.00 2.90
2988 3005 0.030638 GCCATCGTGCAAGTTTGTGT 59.969 50.000 0.00 0.00 0.00 3.72
2989 3006 0.030504 TGCCATCGTGCAAGTTTGTG 59.969 50.000 0.00 0.00 38.56 3.33
2990 3007 0.743688 TTGCCATCGTGCAAGTTTGT 59.256 45.000 0.00 0.00 45.77 2.83
2991 3008 3.566273 TTGCCATCGTGCAAGTTTG 57.434 47.368 0.00 0.00 45.77 2.93
2997 3014 1.360931 CGATCTGTTGCCATCGTGCA 61.361 55.000 0.00 0.00 37.67 4.57
2998 3015 1.349627 CGATCTGTTGCCATCGTGC 59.650 57.895 0.00 0.00 37.67 5.34
2999 3016 1.349627 GCGATCTGTTGCCATCGTG 59.650 57.895 3.51 0.00 43.18 4.35
3000 3017 0.673333 TTGCGATCTGTTGCCATCGT 60.673 50.000 3.51 0.00 43.18 3.73
3001 3018 0.447406 TTTGCGATCTGTTGCCATCG 59.553 50.000 0.00 0.00 43.93 3.84
3002 3019 1.470098 ACTTTGCGATCTGTTGCCATC 59.530 47.619 0.00 0.00 33.52 3.51
3003 3020 1.470098 GACTTTGCGATCTGTTGCCAT 59.530 47.619 0.00 0.00 33.52 4.40
3004 3021 0.874390 GACTTTGCGATCTGTTGCCA 59.126 50.000 0.00 0.00 33.52 4.92
3005 3022 0.874390 TGACTTTGCGATCTGTTGCC 59.126 50.000 0.00 0.00 33.52 4.52
3006 3023 1.532868 ACTGACTTTGCGATCTGTTGC 59.467 47.619 0.00 0.00 35.16 4.17
3007 3024 3.885484 AACTGACTTTGCGATCTGTTG 57.115 42.857 0.00 0.00 36.15 3.33
3008 3025 4.214980 CAAACTGACTTTGCGATCTGTT 57.785 40.909 0.00 0.00 38.27 3.16
3009 3026 3.885484 CAAACTGACTTTGCGATCTGT 57.115 42.857 0.00 0.00 33.06 3.41
3017 3034 0.584396 TACCGCGCAAACTGACTTTG 59.416 50.000 8.75 0.00 42.12 2.77
3018 3035 0.584876 GTACCGCGCAAACTGACTTT 59.415 50.000 8.75 0.00 0.00 2.66
3019 3036 1.226030 GGTACCGCGCAAACTGACTT 61.226 55.000 8.75 0.00 0.00 3.01
3020 3037 1.666872 GGTACCGCGCAAACTGACT 60.667 57.895 8.75 0.00 0.00 3.41
3021 3038 0.388907 TAGGTACCGCGCAAACTGAC 60.389 55.000 8.75 0.00 0.00 3.51
3022 3039 0.388907 GTAGGTACCGCGCAAACTGA 60.389 55.000 8.75 0.00 0.00 3.41
3023 3040 1.356527 GGTAGGTACCGCGCAAACTG 61.357 60.000 8.75 0.00 36.50 3.16
3024 3041 1.079612 GGTAGGTACCGCGCAAACT 60.080 57.895 8.75 2.20 36.50 2.66
3025 3042 3.478226 GGTAGGTACCGCGCAAAC 58.522 61.111 8.75 1.08 36.50 2.93
3033 3050 0.391966 GATCCTTGCCGGTAGGTACC 59.608 60.000 20.03 2.73 42.98 3.34
3034 3051 1.340568 GAGATCCTTGCCGGTAGGTAC 59.659 57.143 20.03 15.57 40.50 3.34
3035 3052 1.063492 TGAGATCCTTGCCGGTAGGTA 60.063 52.381 20.03 10.47 40.50 3.08
3036 3053 0.325296 TGAGATCCTTGCCGGTAGGT 60.325 55.000 20.03 10.61 40.50 3.08
3037 3054 1.001406 GATGAGATCCTTGCCGGTAGG 59.999 57.143 16.19 16.19 41.62 3.18
3038 3055 1.336332 CGATGAGATCCTTGCCGGTAG 60.336 57.143 1.90 0.31 0.00 3.18
3039 3056 0.673985 CGATGAGATCCTTGCCGGTA 59.326 55.000 1.90 0.00 0.00 4.02
3040 3057 1.330655 ACGATGAGATCCTTGCCGGT 61.331 55.000 1.90 0.00 0.00 5.28
3041 3058 0.179073 AACGATGAGATCCTTGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
3042 3059 1.328680 CAAACGATGAGATCCTTGCCG 59.671 52.381 0.00 0.00 0.00 5.69
3043 3060 1.064654 GCAAACGATGAGATCCTTGCC 59.935 52.381 0.00 0.00 38.06 4.52
3044 3061 1.739466 TGCAAACGATGAGATCCTTGC 59.261 47.619 0.00 0.00 41.44 4.01
3045 3062 3.751621 GTTGCAAACGATGAGATCCTTG 58.248 45.455 0.00 0.00 36.92 3.61
3062 3079 3.730963 GCTTGTATCTTAAAGCGGGTTGC 60.731 47.826 0.00 0.00 46.98 4.17
3063 3080 4.016113 GCTTGTATCTTAAAGCGGGTTG 57.984 45.455 0.00 0.00 39.43 3.77
3069 3086 4.700213 TGTCCTTGGCTTGTATCTTAAAGC 59.300 41.667 0.00 0.00 46.48 3.51
3070 3087 5.163713 GCTGTCCTTGGCTTGTATCTTAAAG 60.164 44.000 0.00 0.00 0.00 1.85
3071 3088 4.700213 GCTGTCCTTGGCTTGTATCTTAAA 59.300 41.667 0.00 0.00 0.00 1.52
3072 3089 4.019321 AGCTGTCCTTGGCTTGTATCTTAA 60.019 41.667 0.00 0.00 34.96 1.85
3073 3090 3.519510 AGCTGTCCTTGGCTTGTATCTTA 59.480 43.478 0.00 0.00 34.96 2.10
3074 3091 2.307098 AGCTGTCCTTGGCTTGTATCTT 59.693 45.455 0.00 0.00 34.96 2.40
3075 3092 1.912043 AGCTGTCCTTGGCTTGTATCT 59.088 47.619 0.00 0.00 34.96 1.98
3076 3093 2.012673 CAGCTGTCCTTGGCTTGTATC 58.987 52.381 5.25 0.00 36.59 2.24
3077 3094 1.352352 ACAGCTGTCCTTGGCTTGTAT 59.648 47.619 15.25 0.00 36.59 2.29
3078 3095 0.764890 ACAGCTGTCCTTGGCTTGTA 59.235 50.000 15.25 0.00 36.59 2.41
3079 3096 0.106519 AACAGCTGTCCTTGGCTTGT 60.107 50.000 21.95 0.00 36.59 3.16
3080 3097 1.896220 TAACAGCTGTCCTTGGCTTG 58.104 50.000 21.95 0.00 36.59 4.01
3081 3098 2.887151 ATAACAGCTGTCCTTGGCTT 57.113 45.000 21.95 4.01 36.59 4.35
3082 3099 2.092914 GGTATAACAGCTGTCCTTGGCT 60.093 50.000 21.95 4.85 39.60 4.75
3083 3100 2.092914 AGGTATAACAGCTGTCCTTGGC 60.093 50.000 21.95 8.53 32.41 4.52
3084 3101 3.914426 AGGTATAACAGCTGTCCTTGG 57.086 47.619 21.95 0.00 32.41 3.61
3085 3102 4.080863 AGGAAGGTATAACAGCTGTCCTTG 60.081 45.833 31.52 4.66 38.24 3.61
3086 3103 4.104831 AGGAAGGTATAACAGCTGTCCTT 58.895 43.478 28.48 28.48 38.24 3.36
3087 3104 3.725634 AGGAAGGTATAACAGCTGTCCT 58.274 45.455 21.95 19.07 37.41 3.85
3088 3105 4.489306 AAGGAAGGTATAACAGCTGTCC 57.511 45.455 21.95 16.93 34.44 4.02
3089 3106 5.735766 AGAAAGGAAGGTATAACAGCTGTC 58.264 41.667 21.95 7.33 34.44 3.51
3090 3107 5.763876 AGAAAGGAAGGTATAACAGCTGT 57.236 39.130 15.25 15.25 34.44 4.40
3091 3108 6.758886 CAGTAGAAAGGAAGGTATAACAGCTG 59.241 42.308 13.48 13.48 34.44 4.24
3092 3109 6.440965 ACAGTAGAAAGGAAGGTATAACAGCT 59.559 38.462 0.00 0.00 36.21 4.24
3093 3110 6.641474 ACAGTAGAAAGGAAGGTATAACAGC 58.359 40.000 0.00 0.00 0.00 4.40
3094 3111 8.968969 AGTACAGTAGAAAGGAAGGTATAACAG 58.031 37.037 0.00 0.00 0.00 3.16
3095 3112 8.890410 AGTACAGTAGAAAGGAAGGTATAACA 57.110 34.615 0.00 0.00 0.00 2.41
3100 3117 9.979897 TTGTATAGTACAGTAGAAAGGAAGGTA 57.020 33.333 0.00 0.00 40.24 3.08
3101 3118 8.890410 TTGTATAGTACAGTAGAAAGGAAGGT 57.110 34.615 0.00 0.00 40.24 3.50
3166 3183 8.417884 GGCTCTAAACTTAGATGTGAGATAACT 58.582 37.037 0.00 0.00 38.95 2.24
3167 3184 7.380065 CGGCTCTAAACTTAGATGTGAGATAAC 59.620 40.741 0.00 0.00 38.95 1.89
3168 3185 7.068348 ACGGCTCTAAACTTAGATGTGAGATAA 59.932 37.037 0.00 0.00 38.95 1.75
3169 3186 6.546403 ACGGCTCTAAACTTAGATGTGAGATA 59.454 38.462 0.00 0.00 38.95 1.98
3170 3187 5.361285 ACGGCTCTAAACTTAGATGTGAGAT 59.639 40.000 0.00 0.00 38.95 2.75
3171 3188 4.705507 ACGGCTCTAAACTTAGATGTGAGA 59.294 41.667 0.00 0.00 38.95 3.27
3172 3189 5.000012 ACGGCTCTAAACTTAGATGTGAG 58.000 43.478 0.00 0.00 38.95 3.51
3173 3190 4.438336 CGACGGCTCTAAACTTAGATGTGA 60.438 45.833 0.00 0.00 38.95 3.58
3174 3191 3.791887 CGACGGCTCTAAACTTAGATGTG 59.208 47.826 0.00 0.00 38.95 3.21
3175 3192 3.181489 CCGACGGCTCTAAACTTAGATGT 60.181 47.826 0.00 0.57 38.95 3.06
3176 3193 3.066342 TCCGACGGCTCTAAACTTAGATG 59.934 47.826 9.66 0.00 38.95 2.90
3177 3194 3.285484 TCCGACGGCTCTAAACTTAGAT 58.715 45.455 9.66 0.00 38.95 1.98
3178 3195 2.715046 TCCGACGGCTCTAAACTTAGA 58.285 47.619 9.66 0.00 37.44 2.10
3179 3196 3.315749 AGATCCGACGGCTCTAAACTTAG 59.684 47.826 18.33 0.00 0.00 2.18
3180 3197 3.285484 AGATCCGACGGCTCTAAACTTA 58.715 45.455 18.33 0.00 0.00 2.24
3181 3198 2.100989 AGATCCGACGGCTCTAAACTT 58.899 47.619 18.33 0.00 0.00 2.66
3182 3199 1.765230 AGATCCGACGGCTCTAAACT 58.235 50.000 18.33 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.