Multiple sequence alignment - TraesCS3B01G497500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G497500 chr3B 100.000 2737 0 0 1 2737 741353488 741350752 0.000000e+00 5055.0
1 TraesCS3B01G497500 chr3B 82.652 1297 167 29 670 1940 741384934 741383670 0.000000e+00 1096.0
2 TraesCS3B01G497500 chr3A 91.186 1282 73 13 670 1937 694990114 694988859 0.000000e+00 1705.0
3 TraesCS3B01G497500 chr3A 81.912 973 124 28 987 1940 695021289 695020350 0.000000e+00 774.0
4 TraesCS3B01G497500 chr3A 83.060 549 81 9 14 558 61995885 61995345 3.170000e-134 488.0
5 TraesCS3B01G497500 chr3A 84.865 370 31 10 2128 2482 694988692 694988333 1.560000e-92 350.0
6 TraesCS3B01G497500 chr3A 86.572 283 19 9 670 939 695021568 695021292 7.410000e-76 294.0
7 TraesCS3B01G497500 chr3A 90.435 115 10 1 1956 2069 633923387 633923273 1.700000e-32 150.0
8 TraesCS3B01G497500 chr3A 90.164 61 6 0 2066 2126 512308713 512308653 2.260000e-11 80.5
9 TraesCS3B01G497500 chr3A 100.000 31 0 0 1933 1963 694988724 694988694 1.060000e-04 58.4
10 TraesCS3B01G497500 chr3D 90.000 1330 52 21 657 1950 558662184 558663468 0.000000e+00 1644.0
11 TraesCS3B01G497500 chr3D 81.893 972 132 26 987 1940 558709027 558708082 0.000000e+00 780.0
12 TraesCS3B01G497500 chr3D 81.917 553 86 12 17 558 439204548 439203999 3.210000e-124 455.0
13 TraesCS3B01G497500 chr3D 88.448 277 15 6 670 939 558709296 558709030 4.400000e-83 318.0
14 TraesCS3B01G497500 chr3D 94.886 176 2 3 2218 2389 558663540 558663712 4.490000e-68 268.0
15 TraesCS3B01G497500 chr3D 89.655 116 12 0 1954 2069 163136774 163136889 6.110000e-32 148.0
16 TraesCS3B01G497500 chr4D 83.670 545 79 7 18 559 254698991 254699528 3.150000e-139 505.0
17 TraesCS3B01G497500 chr4D 82.474 194 31 3 367 558 378493560 378493368 1.690000e-37 167.0
18 TraesCS3B01G497500 chr2D 81.915 564 74 17 18 558 602338817 602339375 4.160000e-123 451.0
19 TraesCS3B01G497500 chr2D 80.874 549 87 10 14 559 223382801 223383334 1.520000e-112 416.0
20 TraesCS3B01G497500 chr5D 81.703 552 87 12 18 558 255766755 255766207 5.380000e-122 448.0
21 TraesCS3B01G497500 chr5D 91.743 109 9 0 1961 2069 166628016 166628124 4.720000e-33 152.0
22 TraesCS3B01G497500 chr7A 81.651 545 82 9 18 558 8417824 8418354 1.160000e-118 436.0
23 TraesCS3B01G497500 chr7A 81.818 165 25 3 1962 2126 420780936 420780777 1.710000e-27 134.0
24 TraesCS3B01G497500 chr1D 80.882 544 86 11 18 559 134999724 135000251 1.960000e-111 412.0
25 TraesCS3B01G497500 chr4B 80.686 554 81 20 18 558 5332770 5333310 9.120000e-110 407.0
26 TraesCS3B01G497500 chr7D 87.021 339 35 7 20 357 292918970 292918640 9.250000e-100 374.0
27 TraesCS3B01G497500 chr6D 85.879 347 42 6 14 357 328820638 328820980 2.000000e-96 363.0
28 TraesCS3B01G497500 chr4A 78.330 563 97 14 18 559 709565329 709565887 9.390000e-90 340.0
29 TraesCS3B01G497500 chrUn 80.409 342 59 5 220 558 389459669 389460005 1.260000e-63 254.0
30 TraesCS3B01G497500 chr2B 92.661 109 8 0 1961 2069 632645950 632646058 1.010000e-34 158.0
31 TraesCS3B01G497500 chr2B 96.552 87 3 0 2590 2676 543148168 543148254 7.900000e-31 145.0
32 TraesCS3B01G497500 chr2B 96.970 66 1 1 2489 2554 543147927 543147991 2.880000e-20 110.0
33 TraesCS3B01G497500 chr5B 89.516 124 12 1 1947 2069 689882538 689882661 3.650000e-34 156.0
34 TraesCS3B01G497500 chr5B 83.234 167 24 4 1962 2126 411855346 411855510 1.700000e-32 150.0
35 TraesCS3B01G497500 chr1B 92.661 109 6 2 1962 2069 399799578 399799471 3.650000e-34 156.0
36 TraesCS3B01G497500 chr1B 91.071 112 10 0 1958 2069 123955453 123955342 4.720000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G497500 chr3B 741350752 741353488 2736 True 5055.000000 5055 100.0000 1 2737 1 chr3B.!!$R1 2736
1 TraesCS3B01G497500 chr3B 741383670 741384934 1264 True 1096.000000 1096 82.6520 670 1940 1 chr3B.!!$R2 1270
2 TraesCS3B01G497500 chr3A 694988333 694990114 1781 True 704.466667 1705 92.0170 670 2482 3 chr3A.!!$R4 1812
3 TraesCS3B01G497500 chr3A 695020350 695021568 1218 True 534.000000 774 84.2420 670 1940 2 chr3A.!!$R5 1270
4 TraesCS3B01G497500 chr3A 61995345 61995885 540 True 488.000000 488 83.0600 14 558 1 chr3A.!!$R1 544
5 TraesCS3B01G497500 chr3D 558662184 558663712 1528 False 956.000000 1644 92.4430 657 2389 2 chr3D.!!$F2 1732
6 TraesCS3B01G497500 chr3D 558708082 558709296 1214 True 549.000000 780 85.1705 670 1940 2 chr3D.!!$R2 1270
7 TraesCS3B01G497500 chr3D 439203999 439204548 549 True 455.000000 455 81.9170 17 558 1 chr3D.!!$R1 541
8 TraesCS3B01G497500 chr4D 254698991 254699528 537 False 505.000000 505 83.6700 18 559 1 chr4D.!!$F1 541
9 TraesCS3B01G497500 chr2D 602338817 602339375 558 False 451.000000 451 81.9150 18 558 1 chr2D.!!$F2 540
10 TraesCS3B01G497500 chr2D 223382801 223383334 533 False 416.000000 416 80.8740 14 559 1 chr2D.!!$F1 545
11 TraesCS3B01G497500 chr5D 255766207 255766755 548 True 448.000000 448 81.7030 18 558 1 chr5D.!!$R1 540
12 TraesCS3B01G497500 chr7A 8417824 8418354 530 False 436.000000 436 81.6510 18 558 1 chr7A.!!$F1 540
13 TraesCS3B01G497500 chr1D 134999724 135000251 527 False 412.000000 412 80.8820 18 559 1 chr1D.!!$F1 541
14 TraesCS3B01G497500 chr4B 5332770 5333310 540 False 407.000000 407 80.6860 18 558 1 chr4B.!!$F1 540
15 TraesCS3B01G497500 chr4A 709565329 709565887 558 False 340.000000 340 78.3300 18 559 1 chr4A.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 489 0.096976 CGCGCCCTAAACATGACTTG 59.903 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1929 0.037697 TCGACGATGGTCCTTGGTTG 60.038 55.0 1.93 1.78 40.17 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.175284 TGCATCTAAGGATGGCAATGGA 59.825 45.455 7.89 0.00 46.77 3.41
38 39 2.138535 AGGATGGCAATGGATAGGGA 57.861 50.000 0.00 0.00 0.00 4.20
39 40 2.431997 AGGATGGCAATGGATAGGGAA 58.568 47.619 0.00 0.00 0.00 3.97
44 45 5.513233 GATGGCAATGGATAGGGAATATGT 58.487 41.667 0.00 0.00 0.00 2.29
46 47 4.353489 TGGCAATGGATAGGGAATATGTGA 59.647 41.667 0.00 0.00 0.00 3.58
50 51 3.851979 TGGATAGGGAATATGTGACGGA 58.148 45.455 0.00 0.00 0.00 4.69
52 53 4.222810 TGGATAGGGAATATGTGACGGATG 59.777 45.833 0.00 0.00 0.00 3.51
100 102 9.174166 GTGTAGTCAATGGGTACAAAATTCTAT 57.826 33.333 0.00 0.00 0.00 1.98
133 135 9.139734 TCGTATCTATGGGTATGAAACTTTACT 57.860 33.333 0.00 0.00 0.00 2.24
136 138 6.278363 TCTATGGGTATGAAACTTTACTCGC 58.722 40.000 0.00 0.00 0.00 5.03
190 192 4.384427 GGGTATCCAACGGGTAGATCAAAA 60.384 45.833 0.00 0.00 34.93 2.44
358 390 2.533266 AGCTCACGACACACTTCATT 57.467 45.000 0.00 0.00 0.00 2.57
364 396 5.063944 GCTCACGACACACTTCATTGATAAT 59.936 40.000 0.00 0.00 0.00 1.28
365 397 6.402550 GCTCACGACACACTTCATTGATAATT 60.403 38.462 0.00 0.00 0.00 1.40
367 399 8.541133 TCACGACACACTTCATTGATAATTAA 57.459 30.769 0.00 0.00 0.00 1.40
368 400 8.655970 TCACGACACACTTCATTGATAATTAAG 58.344 33.333 0.00 0.00 0.00 1.85
398 439 7.388776 CACATGTCAGTATAAATGGGTAGGATG 59.611 40.741 0.00 0.00 0.00 3.51
426 467 0.180171 TCCACGGATACAAGGCCATG 59.820 55.000 5.01 5.77 0.00 3.66
448 489 0.096976 CGCGCCCTAAACATGACTTG 59.903 55.000 0.00 0.00 0.00 3.16
451 492 2.422597 CGCCCTAAACATGACTTGACA 58.577 47.619 0.00 0.00 0.00 3.58
452 493 2.811431 CGCCCTAAACATGACTTGACAA 59.189 45.455 0.00 0.00 0.00 3.18
461 502 5.148651 ACATGACTTGACAAGTAGGGTAC 57.851 43.478 20.61 8.02 43.03 3.34
471 512 5.046304 TGACAAGTAGGGTACGAGTACTACT 60.046 44.000 12.44 10.28 36.36 2.57
502 543 8.227791 GGTATAAAATTATGTCCATACACTGCG 58.772 37.037 0.00 0.00 38.78 5.18
506 547 2.908688 ATGTCCATACACTGCGCATA 57.091 45.000 12.24 0.00 38.78 3.14
549 591 8.091385 GGTACCCGTACTATGAATAAAATTGG 57.909 38.462 0.00 0.00 36.36 3.16
559 601 9.082313 ACTATGAATAAAATTGGCATCCTTAGG 57.918 33.333 0.00 0.00 0.00 2.69
560 602 7.919385 ATGAATAAAATTGGCATCCTTAGGT 57.081 32.000 0.00 0.00 0.00 3.08
561 603 7.111247 TGAATAAAATTGGCATCCTTAGGTG 57.889 36.000 0.00 0.00 0.00 4.00
562 604 3.893326 AAAATTGGCATCCTTAGGTGC 57.107 42.857 14.47 14.47 40.55 5.01
563 605 2.530460 AATTGGCATCCTTAGGTGCA 57.470 45.000 21.00 7.78 43.00 4.57
564 606 2.761786 ATTGGCATCCTTAGGTGCAT 57.238 45.000 21.00 9.28 43.00 3.96
565 607 2.057137 TTGGCATCCTTAGGTGCATC 57.943 50.000 21.00 10.01 43.00 3.91
566 608 0.179048 TGGCATCCTTAGGTGCATCG 60.179 55.000 21.00 0.00 43.00 3.84
567 609 1.510480 GGCATCCTTAGGTGCATCGC 61.510 60.000 21.00 7.60 43.00 4.58
568 610 1.510480 GCATCCTTAGGTGCATCGCC 61.510 60.000 16.81 0.00 40.94 5.54
569 611 0.886490 CATCCTTAGGTGCATCGCCC 60.886 60.000 0.00 0.00 33.99 6.13
570 612 2.056906 ATCCTTAGGTGCATCGCCCC 62.057 60.000 0.00 0.00 33.99 5.80
571 613 2.588877 CTTAGGTGCATCGCCCCG 60.589 66.667 0.00 0.00 33.99 5.73
572 614 3.385749 CTTAGGTGCATCGCCCCGT 62.386 63.158 0.00 0.00 33.99 5.28
573 615 3.673956 TTAGGTGCATCGCCCCGTG 62.674 63.158 0.00 0.00 33.99 4.94
579 621 4.386951 CATCGCCCCGTGTCCACA 62.387 66.667 0.00 0.00 0.00 4.17
580 622 3.399181 ATCGCCCCGTGTCCACAT 61.399 61.111 0.00 0.00 0.00 3.21
581 623 3.680620 ATCGCCCCGTGTCCACATG 62.681 63.158 0.00 0.00 0.00 3.21
582 624 4.697756 CGCCCCGTGTCCACATGT 62.698 66.667 0.00 0.00 0.00 3.21
583 625 2.746277 GCCCCGTGTCCACATGTC 60.746 66.667 0.00 0.00 0.00 3.06
584 626 2.046314 CCCCGTGTCCACATGTCC 60.046 66.667 0.00 0.00 0.00 4.02
585 627 2.434185 CCCGTGTCCACATGTCCG 60.434 66.667 0.00 0.00 0.00 4.79
586 628 3.118454 CCGTGTCCACATGTCCGC 61.118 66.667 0.00 0.00 0.00 5.54
587 629 3.118454 CGTGTCCACATGTCCGCC 61.118 66.667 0.00 0.00 0.00 6.13
588 630 3.118454 GTGTCCACATGTCCGCCG 61.118 66.667 0.00 0.00 0.00 6.46
607 649 4.038080 GGTCCGTTTTGCCGCCTG 62.038 66.667 0.00 0.00 0.00 4.85
608 650 2.975799 GTCCGTTTTGCCGCCTGA 60.976 61.111 0.00 0.00 0.00 3.86
609 651 2.203224 TCCGTTTTGCCGCCTGAA 60.203 55.556 0.00 0.00 0.00 3.02
610 652 1.824329 TCCGTTTTGCCGCCTGAAA 60.824 52.632 0.00 0.00 0.00 2.69
611 653 1.660264 CCGTTTTGCCGCCTGAAAC 60.660 57.895 0.00 0.00 0.00 2.78
612 654 1.064946 CGTTTTGCCGCCTGAAACA 59.935 52.632 11.98 0.00 33.93 2.83
613 655 0.526524 CGTTTTGCCGCCTGAAACAA 60.527 50.000 11.98 0.00 33.93 2.83
614 656 1.646189 GTTTTGCCGCCTGAAACAAA 58.354 45.000 8.42 0.00 34.34 2.83
615 657 1.326245 GTTTTGCCGCCTGAAACAAAC 59.674 47.619 8.42 0.00 34.34 2.93
616 658 0.532573 TTTGCCGCCTGAAACAAACA 59.467 45.000 0.00 0.00 0.00 2.83
617 659 0.532573 TTGCCGCCTGAAACAAACAA 59.467 45.000 0.00 0.00 0.00 2.83
618 660 0.532573 TGCCGCCTGAAACAAACAAA 59.467 45.000 0.00 0.00 0.00 2.83
619 661 1.066858 TGCCGCCTGAAACAAACAAAA 60.067 42.857 0.00 0.00 0.00 2.44
620 662 2.003301 GCCGCCTGAAACAAACAAAAA 58.997 42.857 0.00 0.00 0.00 1.94
645 687 5.494863 GAATGAAATTCGTTTCCGTTTGG 57.505 39.130 1.63 0.00 44.37 3.28
646 688 3.357166 TGAAATTCGTTTCCGTTTGGG 57.643 42.857 0.00 0.00 35.24 4.12
647 689 2.688958 TGAAATTCGTTTCCGTTTGGGT 59.311 40.909 0.00 0.00 37.00 4.51
648 690 3.243134 TGAAATTCGTTTCCGTTTGGGTC 60.243 43.478 0.00 0.00 37.00 4.46
649 691 0.869730 ATTCGTTTCCGTTTGGGTCG 59.130 50.000 0.00 0.00 37.00 4.79
651 693 2.640989 GTTTCCGTTTGGGTCGGC 59.359 61.111 0.00 0.00 46.49 5.54
652 694 2.595172 TTTCCGTTTGGGTCGGCC 60.595 61.111 0.00 0.00 46.49 6.13
668 710 2.203422 CCCGGTTGAAGTTGCCCA 60.203 61.111 0.00 0.00 0.00 5.36
690 735 0.617413 CTGCCTGGTGAGAGTCCAAT 59.383 55.000 0.00 0.00 34.35 3.16
767 815 0.109532 TGGGCAATCGGTTGAGTTCA 59.890 50.000 13.85 0.99 37.53 3.18
780 828 1.171308 GAGTTCACCATGCATGCACT 58.829 50.000 25.37 13.80 0.00 4.40
812 867 5.805728 ACCCTATCAGTTTTACCACTTCTG 58.194 41.667 0.00 0.00 0.00 3.02
876 941 3.885901 TCGTCATCCTATCAGTTCTCCTG 59.114 47.826 0.00 0.00 42.97 3.86
941 1010 1.338337 TCTTCTTCGGAGATCATCGGC 59.662 52.381 0.00 0.00 35.04 5.54
997 1087 2.167693 TGGCTCGGTTTTGATACGATCT 59.832 45.455 0.00 0.00 35.93 2.75
1005 1098 4.213482 GGTTTTGATACGATCTACATGGCC 59.787 45.833 0.00 0.00 0.00 5.36
1278 1371 2.364324 CCATTGATTTGCCATCTGGAGG 59.636 50.000 0.00 0.00 37.39 4.30
1302 1395 4.191544 CAAATCGACCTAATCCTTCTGCA 58.808 43.478 0.00 0.00 0.00 4.41
1511 1608 1.746615 CGGACACTGCAAGGATGGG 60.747 63.158 0.00 0.00 39.30 4.00
1581 1678 1.226603 GCATCGTCGCCGTTAGAGT 60.227 57.895 0.00 0.00 35.01 3.24
1605 1702 2.608998 CCGACGGATCCATCATCTTCAG 60.609 54.545 8.64 0.00 0.00 3.02
1757 1870 5.661458 TGAGCAAATCTTAGTGTAGGCTAC 58.339 41.667 17.76 17.76 0.00 3.58
1799 1919 3.952675 GTGGTGTGCGTGCCTGTG 61.953 66.667 0.00 0.00 0.00 3.66
1800 1920 4.481617 TGGTGTGCGTGCCTGTGT 62.482 61.111 0.00 0.00 0.00 3.72
1801 1921 3.952675 GGTGTGCGTGCCTGTGTG 61.953 66.667 0.00 0.00 0.00 3.82
1802 1922 4.612536 GTGTGCGTGCCTGTGTGC 62.613 66.667 0.00 0.00 0.00 4.57
1809 1929 2.894879 TGCCTGTGTGCGTGTGAC 60.895 61.111 0.00 0.00 0.00 3.67
1812 1932 1.351707 CCTGTGTGCGTGTGACAAC 59.648 57.895 0.00 0.00 0.00 3.32
1823 1943 1.880027 GTGTGACAACCAAGGACCATC 59.120 52.381 0.00 0.00 0.00 3.51
1824 1944 1.156736 GTGACAACCAAGGACCATCG 58.843 55.000 0.00 0.00 0.00 3.84
1839 1959 5.301045 AGGACCATCGTCGATTTAGTATCAA 59.699 40.000 4.63 0.00 40.17 2.57
1840 1960 5.629849 GGACCATCGTCGATTTAGTATCAAG 59.370 44.000 4.63 0.00 40.17 3.02
1867 1987 3.193056 TCGGTTTGATGTATCGTGTACCA 59.807 43.478 0.00 0.00 0.00 3.25
1882 2006 4.119862 GTGTACCATCTTCGCATGTGTAT 58.880 43.478 6.09 0.00 0.00 2.29
1883 2007 4.209288 GTGTACCATCTTCGCATGTGTATC 59.791 45.833 6.09 0.00 0.00 2.24
1894 2019 4.084066 TCGCATGTGTATCAACAACAACTC 60.084 41.667 6.09 0.00 37.36 3.01
1896 2021 5.149273 GCATGTGTATCAACAACAACTCTG 58.851 41.667 0.00 0.00 37.36 3.35
1901 2026 7.247728 TGTGTATCAACAACAACTCTGTTTTC 58.752 34.615 0.00 0.00 43.45 2.29
1963 2236 7.065803 TGCAGCCTTGAATTTGAGTTATACTAC 59.934 37.037 0.00 0.00 0.00 2.73
1964 2237 7.281100 GCAGCCTTGAATTTGAGTTATACTACT 59.719 37.037 0.00 0.00 0.00 2.57
1965 2238 8.821894 CAGCCTTGAATTTGAGTTATACTACTC 58.178 37.037 0.00 0.00 43.86 2.59
1966 2239 7.988028 AGCCTTGAATTTGAGTTATACTACTCC 59.012 37.037 2.78 0.00 43.11 3.85
1967 2240 7.226918 GCCTTGAATTTGAGTTATACTACTCCC 59.773 40.741 2.78 0.00 43.11 4.30
1968 2241 8.487028 CCTTGAATTTGAGTTATACTACTCCCT 58.513 37.037 2.78 0.00 43.11 4.20
1969 2242 9.535878 CTTGAATTTGAGTTATACTACTCCCTC 57.464 37.037 2.78 0.00 43.11 4.30
1970 2243 8.019656 TGAATTTGAGTTATACTACTCCCTCC 57.980 38.462 2.78 0.00 43.11 4.30
1971 2244 6.651975 ATTTGAGTTATACTACTCCCTCCG 57.348 41.667 2.78 0.00 43.11 4.63
1972 2245 4.785346 TGAGTTATACTACTCCCTCCGT 57.215 45.455 2.78 0.00 43.11 4.69
1973 2246 4.712476 TGAGTTATACTACTCCCTCCGTC 58.288 47.826 2.78 0.00 43.11 4.79
1974 2247 4.071423 GAGTTATACTACTCCCTCCGTCC 58.929 52.174 0.00 0.00 38.88 4.79
1975 2248 2.810852 GTTATACTACTCCCTCCGTCCG 59.189 54.545 0.00 0.00 0.00 4.79
1976 2249 1.135094 ATACTACTCCCTCCGTCCGA 58.865 55.000 0.00 0.00 0.00 4.55
1977 2250 0.911769 TACTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
1978 2251 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
1979 2252 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
1980 2253 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
1981 2254 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1982 2255 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1983 2256 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1984 2257 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1985 2258 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1986 2259 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1987 2260 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1988 2261 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1989 2262 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1990 2263 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1991 2264 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1992 2265 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1993 2266 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1994 2267 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1995 2268 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1996 2269 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1997 2270 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
1998 2271 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
1999 2272 8.638565 CCGAAAATACTTGTCATCAAAATGAAC 58.361 33.333 0.00 0.00 43.42 3.18
2000 2273 9.179552 CGAAAATACTTGTCATCAAAATGAACA 57.820 29.630 0.00 0.00 43.42 3.18
2006 2279 8.638685 ACTTGTCATCAAAATGAACAAAAGAG 57.361 30.769 0.00 0.00 43.42 2.85
2007 2280 8.469200 ACTTGTCATCAAAATGAACAAAAGAGA 58.531 29.630 0.00 0.00 43.42 3.10
2008 2281 9.304731 CTTGTCATCAAAATGAACAAAAGAGAA 57.695 29.630 0.87 0.00 43.42 2.87
2009 2282 9.820725 TTGTCATCAAAATGAACAAAAGAGAAT 57.179 25.926 0.00 0.00 43.42 2.40
2010 2283 9.251792 TGTCATCAAAATGAACAAAAGAGAATG 57.748 29.630 0.00 0.00 43.42 2.67
2011 2284 9.252962 GTCATCAAAATGAACAAAAGAGAATGT 57.747 29.630 0.00 0.00 43.42 2.71
2115 2388 9.959749 TCATTTTGATAACAAGTACTTTTGGAC 57.040 29.630 5.07 0.00 37.32 4.02
2116 2389 8.901748 CATTTTGATAACAAGTACTTTTGGACG 58.098 33.333 5.07 0.00 37.32 4.79
2117 2390 5.600908 TGATAACAAGTACTTTTGGACGC 57.399 39.130 5.07 0.00 32.32 5.19
2118 2391 5.057819 TGATAACAAGTACTTTTGGACGCA 58.942 37.500 5.07 0.00 32.32 5.24
2119 2392 5.703592 TGATAACAAGTACTTTTGGACGCAT 59.296 36.000 5.07 0.00 32.32 4.73
2120 2393 3.896648 ACAAGTACTTTTGGACGCATG 57.103 42.857 5.07 0.00 32.32 4.06
2121 2394 2.552315 ACAAGTACTTTTGGACGCATGG 59.448 45.455 5.07 0.00 32.32 3.66
2122 2395 2.811431 CAAGTACTTTTGGACGCATGGA 59.189 45.455 5.07 0.00 0.00 3.41
2123 2396 2.699954 AGTACTTTTGGACGCATGGAG 58.300 47.619 0.00 0.00 0.00 3.86
2132 2405 1.467342 GGACGCATGGAGTACAAAACC 59.533 52.381 0.00 0.00 0.00 3.27
2174 2448 6.951643 ACTTTACAACTTACGGATGAACAAC 58.048 36.000 0.00 0.00 0.00 3.32
2182 2456 8.755941 CAACTTACGGATGAACAACTGATATAG 58.244 37.037 0.00 0.00 0.00 1.31
2192 2492 5.654603 ACAACTGATATAGGACGTGAACA 57.345 39.130 0.00 0.00 0.00 3.18
2194 2494 4.650754 ACTGATATAGGACGTGAACACC 57.349 45.455 0.00 0.00 0.00 4.16
2196 2496 4.464951 ACTGATATAGGACGTGAACACCAA 59.535 41.667 0.00 0.00 0.00 3.67
2197 2497 5.128827 ACTGATATAGGACGTGAACACCAAT 59.871 40.000 0.00 0.00 0.00 3.16
2198 2498 6.322969 ACTGATATAGGACGTGAACACCAATA 59.677 38.462 0.00 0.00 0.00 1.90
2199 2499 7.015292 ACTGATATAGGACGTGAACACCAATAT 59.985 37.037 0.00 0.00 0.00 1.28
2200 2500 8.411991 TGATATAGGACGTGAACACCAATATA 57.588 34.615 0.00 0.00 0.00 0.86
2201 2501 8.520351 TGATATAGGACGTGAACACCAATATAG 58.480 37.037 0.00 0.00 0.00 1.31
2202 2502 4.402056 AGGACGTGAACACCAATATAGG 57.598 45.455 0.00 0.00 0.00 2.57
2203 2503 3.134081 AGGACGTGAACACCAATATAGGG 59.866 47.826 0.00 0.00 0.00 3.53
2204 2504 3.463944 GACGTGAACACCAATATAGGGG 58.536 50.000 0.00 0.00 38.34 4.79
2205 2505 2.171870 ACGTGAACACCAATATAGGGGG 59.828 50.000 0.00 0.00 35.95 5.40
2346 2651 0.329596 CCTCTGTAGCCCCTTTGCTT 59.670 55.000 0.00 0.00 42.75 3.91
2347 2652 1.272147 CCTCTGTAGCCCCTTTGCTTT 60.272 52.381 0.00 0.00 42.75 3.51
2348 2653 2.026262 CCTCTGTAGCCCCTTTGCTTTA 60.026 50.000 0.00 0.00 42.75 1.85
2389 2702 5.248640 TCCAGAATTAGTTCTTTGAGGCAG 58.751 41.667 0.00 0.00 41.92 4.85
2390 2703 4.142513 CCAGAATTAGTTCTTTGAGGCAGC 60.143 45.833 0.00 0.00 41.92 5.25
2392 2705 4.940654 AGAATTAGTTCTTTGAGGCAGCTC 59.059 41.667 0.00 0.00 41.92 4.09
2393 2706 3.769739 TTAGTTCTTTGAGGCAGCTCA 57.230 42.857 0.00 0.00 0.00 4.26
2394 2707 2.875094 AGTTCTTTGAGGCAGCTCAT 57.125 45.000 0.00 0.00 32.91 2.90
2395 2708 3.988976 AGTTCTTTGAGGCAGCTCATA 57.011 42.857 0.00 0.00 32.91 2.15
2396 2709 4.500499 AGTTCTTTGAGGCAGCTCATAT 57.500 40.909 0.00 0.00 32.91 1.78
2397 2710 5.620738 AGTTCTTTGAGGCAGCTCATATA 57.379 39.130 0.00 0.00 32.91 0.86
2406 2719 9.881649 TTTGAGGCAGCTCATATATTTATAGAG 57.118 33.333 0.00 0.00 32.91 2.43
2425 2738 2.166664 GAGGAAATCTCTACGTGCCACT 59.833 50.000 0.00 0.00 39.38 4.00
2441 2754 0.524392 CACTCGCTAGTCAAGGCTCG 60.524 60.000 0.00 0.00 31.97 5.03
2471 2784 3.621953 GCTAGCTGCCCTCCTTATG 57.378 57.895 7.70 0.00 35.15 1.90
2474 2787 2.042464 CTAGCTGCCCTCCTTATGTGA 58.958 52.381 0.00 0.00 0.00 3.58
2482 2795 2.771943 CCCTCCTTATGTGACTAGCCAA 59.228 50.000 0.00 0.00 0.00 4.52
2483 2796 3.432326 CCCTCCTTATGTGACTAGCCAAC 60.432 52.174 0.00 0.00 0.00 3.77
2484 2797 3.432326 CCTCCTTATGTGACTAGCCAACC 60.432 52.174 0.00 0.00 0.00 3.77
2485 2798 2.167693 TCCTTATGTGACTAGCCAACCG 59.832 50.000 0.00 0.00 0.00 4.44
2486 2799 2.167693 CCTTATGTGACTAGCCAACCGA 59.832 50.000 0.00 0.00 0.00 4.69
2487 2800 3.181465 CCTTATGTGACTAGCCAACCGAT 60.181 47.826 0.00 0.00 0.00 4.18
2488 2801 4.038763 CCTTATGTGACTAGCCAACCGATA 59.961 45.833 0.00 0.00 0.00 2.92
2489 2802 5.452776 CCTTATGTGACTAGCCAACCGATAA 60.453 44.000 0.00 0.00 0.00 1.75
2490 2803 3.520290 TGTGACTAGCCAACCGATAAG 57.480 47.619 0.00 0.00 0.00 1.73
2491 2804 3.093814 TGTGACTAGCCAACCGATAAGA 58.906 45.455 0.00 0.00 0.00 2.10
2492 2805 3.119245 TGTGACTAGCCAACCGATAAGAC 60.119 47.826 0.00 0.00 0.00 3.01
2493 2806 2.429610 TGACTAGCCAACCGATAAGACC 59.570 50.000 0.00 0.00 0.00 3.85
2494 2807 2.429610 GACTAGCCAACCGATAAGACCA 59.570 50.000 0.00 0.00 0.00 4.02
2495 2808 2.835764 ACTAGCCAACCGATAAGACCAA 59.164 45.455 0.00 0.00 0.00 3.67
2496 2809 3.454812 ACTAGCCAACCGATAAGACCAAT 59.545 43.478 0.00 0.00 0.00 3.16
2497 2810 4.652421 ACTAGCCAACCGATAAGACCAATA 59.348 41.667 0.00 0.00 0.00 1.90
2498 2811 4.073293 AGCCAACCGATAAGACCAATAG 57.927 45.455 0.00 0.00 0.00 1.73
2499 2812 3.454812 AGCCAACCGATAAGACCAATAGT 59.545 43.478 0.00 0.00 0.00 2.12
2500 2813 3.560068 GCCAACCGATAAGACCAATAGTG 59.440 47.826 0.00 0.00 0.00 2.74
2501 2814 3.560068 CCAACCGATAAGACCAATAGTGC 59.440 47.826 0.00 0.00 0.00 4.40
2502 2815 4.442706 CAACCGATAAGACCAATAGTGCT 58.557 43.478 0.00 0.00 0.00 4.40
2503 2816 5.452776 CCAACCGATAAGACCAATAGTGCTA 60.453 44.000 0.00 0.00 0.00 3.49
2504 2817 5.197682 ACCGATAAGACCAATAGTGCTAC 57.802 43.478 0.00 0.00 0.00 3.58
2505 2818 4.647853 ACCGATAAGACCAATAGTGCTACA 59.352 41.667 0.00 0.00 0.00 2.74
2506 2819 5.304614 ACCGATAAGACCAATAGTGCTACAT 59.695 40.000 0.00 0.00 0.00 2.29
2507 2820 5.864474 CCGATAAGACCAATAGTGCTACATC 59.136 44.000 0.00 0.00 0.00 3.06
2508 2821 6.294787 CCGATAAGACCAATAGTGCTACATCT 60.295 42.308 0.00 0.00 0.00 2.90
2509 2822 7.094334 CCGATAAGACCAATAGTGCTACATCTA 60.094 40.741 0.00 0.00 0.00 1.98
2510 2823 7.751348 CGATAAGACCAATAGTGCTACATCTAC 59.249 40.741 0.00 0.00 0.00 2.59
2511 2824 5.440234 AGACCAATAGTGCTACATCTACG 57.560 43.478 0.00 0.00 0.00 3.51
2512 2825 4.278669 AGACCAATAGTGCTACATCTACGG 59.721 45.833 0.00 0.00 0.00 4.02
2513 2826 4.212716 ACCAATAGTGCTACATCTACGGA 58.787 43.478 0.00 0.00 0.00 4.69
2514 2827 4.037684 ACCAATAGTGCTACATCTACGGAC 59.962 45.833 0.00 0.00 0.00 4.79
2515 2828 4.037565 CCAATAGTGCTACATCTACGGACA 59.962 45.833 0.00 0.00 0.00 4.02
2516 2829 5.451381 CCAATAGTGCTACATCTACGGACAA 60.451 44.000 0.00 0.00 0.00 3.18
2517 2830 5.847111 ATAGTGCTACATCTACGGACAAA 57.153 39.130 0.00 0.00 0.00 2.83
2518 2831 4.737855 AGTGCTACATCTACGGACAAAT 57.262 40.909 0.00 0.00 0.00 2.32
2519 2832 5.086104 AGTGCTACATCTACGGACAAATT 57.914 39.130 0.00 0.00 0.00 1.82
2520 2833 4.870426 AGTGCTACATCTACGGACAAATTG 59.130 41.667 0.00 0.00 0.00 2.32
2521 2834 3.621268 TGCTACATCTACGGACAAATTGC 59.379 43.478 0.00 0.00 0.00 3.56
2522 2835 3.871594 GCTACATCTACGGACAAATTGCT 59.128 43.478 0.00 0.00 0.00 3.91
2523 2836 5.047847 GCTACATCTACGGACAAATTGCTA 58.952 41.667 0.00 0.00 0.00 3.49
2524 2837 5.050972 GCTACATCTACGGACAAATTGCTAC 60.051 44.000 0.00 0.00 0.00 3.58
2525 2838 3.863424 ACATCTACGGACAAATTGCTACG 59.137 43.478 0.00 0.00 0.00 3.51
2526 2839 2.883574 TCTACGGACAAATTGCTACGG 58.116 47.619 8.81 1.98 0.00 4.02
2527 2840 2.492881 TCTACGGACAAATTGCTACGGA 59.507 45.455 8.81 0.63 0.00 4.69
2528 2841 1.435577 ACGGACAAATTGCTACGGAC 58.564 50.000 8.81 0.00 0.00 4.79
2529 2842 0.368907 CGGACAAATTGCTACGGACG 59.631 55.000 0.00 0.00 0.00 4.79
2530 2843 0.725117 GGACAAATTGCTACGGACGG 59.275 55.000 0.00 0.00 0.00 4.79
2531 2844 1.673626 GGACAAATTGCTACGGACGGA 60.674 52.381 0.00 0.00 0.00 4.69
2532 2845 1.659098 GACAAATTGCTACGGACGGAG 59.341 52.381 0.00 0.00 0.00 4.63
2537 2850 2.720605 GCTACGGACGGAGCCTAC 59.279 66.667 17.74 0.00 45.96 3.18
2538 2851 2.117156 GCTACGGACGGAGCCTACA 61.117 63.158 17.74 0.00 45.96 2.74
2539 2852 2.023318 CTACGGACGGAGCCTACAG 58.977 63.158 0.00 0.00 0.00 2.74
2540 2853 0.463295 CTACGGACGGAGCCTACAGA 60.463 60.000 0.00 0.00 0.00 3.41
2541 2854 0.745845 TACGGACGGAGCCTACAGAC 60.746 60.000 0.00 0.00 0.00 3.51
2542 2855 1.749638 CGGACGGAGCCTACAGACT 60.750 63.158 0.00 0.00 0.00 3.24
2543 2856 1.810532 GGACGGAGCCTACAGACTG 59.189 63.158 0.00 0.00 0.00 3.51
2544 2857 0.680280 GGACGGAGCCTACAGACTGA 60.680 60.000 10.08 0.00 0.00 3.41
2545 2858 1.394618 GACGGAGCCTACAGACTGAT 58.605 55.000 10.08 0.00 0.00 2.90
2546 2859 1.066303 GACGGAGCCTACAGACTGATG 59.934 57.143 10.08 1.01 0.00 3.07
2547 2860 1.107114 CGGAGCCTACAGACTGATGT 58.893 55.000 10.08 0.00 37.19 3.06
2548 2861 1.202348 CGGAGCCTACAGACTGATGTG 60.202 57.143 10.08 0.00 34.56 3.21
2549 2862 1.137872 GGAGCCTACAGACTGATGTGG 59.862 57.143 10.08 6.46 34.56 4.17
2550 2863 0.539051 AGCCTACAGACTGATGTGGC 59.461 55.000 10.08 15.27 42.62 5.01
2551 2864 0.807667 GCCTACAGACTGATGTGGCG 60.808 60.000 10.08 0.00 37.51 5.69
2552 2865 0.807667 CCTACAGACTGATGTGGCGC 60.808 60.000 10.08 0.00 34.56 6.53
2553 2866 0.108662 CTACAGACTGATGTGGCGCA 60.109 55.000 10.83 1.92 34.56 6.09
2554 2867 0.389817 TACAGACTGATGTGGCGCAC 60.390 55.000 10.83 6.37 34.56 5.34
2555 2868 1.375140 CAGACTGATGTGGCGCACT 60.375 57.895 10.83 0.00 35.11 4.40
2556 2869 1.375140 AGACTGATGTGGCGCACTG 60.375 57.895 10.83 4.57 35.11 3.66
2557 2870 3.031964 GACTGATGTGGCGCACTGC 62.032 63.158 10.83 0.00 45.38 4.40
2558 2871 2.745100 CTGATGTGGCGCACTGCT 60.745 61.111 10.83 0.00 45.43 4.24
2559 2872 3.035576 CTGATGTGGCGCACTGCTG 62.036 63.158 10.83 0.00 45.43 4.41
2560 2873 3.052082 GATGTGGCGCACTGCTGT 61.052 61.111 10.83 0.00 45.43 4.40
2561 2874 3.318539 GATGTGGCGCACTGCTGTG 62.319 63.158 18.54 18.54 45.43 3.66
2562 2875 3.830464 ATGTGGCGCACTGCTGTGA 62.830 57.895 25.94 5.52 46.55 3.58
2563 2876 3.279116 GTGGCGCACTGCTGTGAA 61.279 61.111 25.94 6.37 46.55 3.18
2564 2877 2.515757 TGGCGCACTGCTGTGAAA 60.516 55.556 25.94 6.03 46.55 2.69
2565 2878 2.117779 TGGCGCACTGCTGTGAAAA 61.118 52.632 25.94 6.36 46.55 2.29
2566 2879 1.286880 GGCGCACTGCTGTGAAAAT 59.713 52.632 25.94 0.00 46.55 1.82
2567 2880 1.005294 GGCGCACTGCTGTGAAAATG 61.005 55.000 25.94 10.88 46.55 2.32
2568 2881 1.005294 GCGCACTGCTGTGAAAATGG 61.005 55.000 25.94 8.86 46.55 3.16
2569 2882 0.387622 CGCACTGCTGTGAAAATGGG 60.388 55.000 25.94 3.84 46.55 4.00
2570 2883 0.961019 GCACTGCTGTGAAAATGGGA 59.039 50.000 25.94 0.00 46.55 4.37
2571 2884 1.547372 GCACTGCTGTGAAAATGGGAT 59.453 47.619 25.94 0.00 46.55 3.85
2572 2885 2.673043 GCACTGCTGTGAAAATGGGATG 60.673 50.000 25.94 0.00 46.55 3.51
2573 2886 1.547372 ACTGCTGTGAAAATGGGATGC 59.453 47.619 0.00 0.00 0.00 3.91
2574 2887 1.546923 CTGCTGTGAAAATGGGATGCA 59.453 47.619 0.00 0.00 0.00 3.96
2575 2888 2.167693 CTGCTGTGAAAATGGGATGCAT 59.832 45.455 0.00 0.00 0.00 3.96
2576 2889 2.093921 TGCTGTGAAAATGGGATGCATG 60.094 45.455 2.46 0.00 0.00 4.06
2577 2890 2.093869 GCTGTGAAAATGGGATGCATGT 60.094 45.455 2.46 0.00 0.00 3.21
2578 2891 3.618019 GCTGTGAAAATGGGATGCATGTT 60.618 43.478 2.46 0.00 0.00 2.71
2579 2892 4.571919 CTGTGAAAATGGGATGCATGTTT 58.428 39.130 2.46 0.00 0.00 2.83
2580 2893 4.970711 TGTGAAAATGGGATGCATGTTTT 58.029 34.783 2.46 6.18 0.00 2.43
2581 2894 5.374921 TGTGAAAATGGGATGCATGTTTTT 58.625 33.333 2.46 4.62 0.00 1.94
2582 2895 5.469421 TGTGAAAATGGGATGCATGTTTTTC 59.531 36.000 2.46 13.53 34.98 2.29
2583 2896 4.689812 TGAAAATGGGATGCATGTTTTTCG 59.310 37.500 2.46 0.00 36.40 3.46
2584 2897 2.965572 ATGGGATGCATGTTTTTCGG 57.034 45.000 2.46 0.00 0.00 4.30
2585 2898 1.916506 TGGGATGCATGTTTTTCGGA 58.083 45.000 2.46 0.00 0.00 4.55
2586 2899 1.818060 TGGGATGCATGTTTTTCGGAG 59.182 47.619 2.46 0.00 0.00 4.63
2587 2900 1.469767 GGGATGCATGTTTTTCGGAGC 60.470 52.381 2.46 0.00 0.00 4.70
2588 2901 1.202114 GGATGCATGTTTTTCGGAGCA 59.798 47.619 2.46 0.00 36.34 4.26
2589 2902 2.352617 GGATGCATGTTTTTCGGAGCAA 60.353 45.455 2.46 0.00 35.45 3.91
2590 2903 2.132740 TGCATGTTTTTCGGAGCAAC 57.867 45.000 0.00 0.00 0.00 4.17
2591 2904 1.680735 TGCATGTTTTTCGGAGCAACT 59.319 42.857 0.00 0.00 0.00 3.16
2592 2905 2.053627 GCATGTTTTTCGGAGCAACTG 58.946 47.619 0.00 0.00 0.00 3.16
2593 2906 2.543653 GCATGTTTTTCGGAGCAACTGT 60.544 45.455 0.00 0.00 0.00 3.55
2594 2907 3.705604 CATGTTTTTCGGAGCAACTGTT 58.294 40.909 0.00 0.00 0.00 3.16
2595 2908 3.143807 TGTTTTTCGGAGCAACTGTTG 57.856 42.857 15.98 15.98 0.00 3.33
2596 2909 2.750166 TGTTTTTCGGAGCAACTGTTGA 59.250 40.909 23.81 0.00 0.00 3.18
2597 2910 3.105937 GTTTTTCGGAGCAACTGTTGAC 58.894 45.455 23.81 15.29 0.00 3.18
2598 2911 2.325583 TTTCGGAGCAACTGTTGACT 57.674 45.000 23.81 18.49 0.00 3.41
2599 2912 1.581934 TTCGGAGCAACTGTTGACTG 58.418 50.000 23.81 18.95 0.00 3.51
2600 2913 0.464036 TCGGAGCAACTGTTGACTGT 59.536 50.000 23.81 4.91 0.00 3.55
2601 2914 1.684450 TCGGAGCAACTGTTGACTGTA 59.316 47.619 23.81 3.27 0.00 2.74
2602 2915 2.061773 CGGAGCAACTGTTGACTGTAG 58.938 52.381 23.81 9.54 0.00 2.74
2603 2916 1.801178 GGAGCAACTGTTGACTGTAGC 59.199 52.381 23.81 6.68 0.00 3.58
2604 2917 1.801178 GAGCAACTGTTGACTGTAGCC 59.199 52.381 23.81 3.78 0.00 3.93
2605 2918 1.140852 AGCAACTGTTGACTGTAGCCA 59.859 47.619 23.81 0.00 0.00 4.75
2606 2919 1.264288 GCAACTGTTGACTGTAGCCAC 59.736 52.381 23.81 0.00 0.00 5.01
2607 2920 1.873591 CAACTGTTGACTGTAGCCACC 59.126 52.381 15.26 0.00 0.00 4.61
2608 2921 0.396811 ACTGTTGACTGTAGCCACCC 59.603 55.000 0.00 0.00 0.00 4.61
2609 2922 0.670546 CTGTTGACTGTAGCCACCCG 60.671 60.000 0.00 0.00 0.00 5.28
2610 2923 2.033194 GTTGACTGTAGCCACCCGC 61.033 63.158 0.00 0.00 37.98 6.13
2611 2924 2.512355 TTGACTGTAGCCACCCGCA 61.512 57.895 0.00 0.00 41.38 5.69
2612 2925 2.434359 GACTGTAGCCACCCGCAC 60.434 66.667 0.00 0.00 41.38 5.34
2613 2926 3.234630 GACTGTAGCCACCCGCACA 62.235 63.158 0.00 0.00 41.38 4.57
2614 2927 2.031919 CTGTAGCCACCCGCACAA 59.968 61.111 0.00 0.00 41.38 3.33
2615 2928 2.031919 TGTAGCCACCCGCACAAG 59.968 61.111 0.00 0.00 41.38 3.16
2616 2929 3.431725 GTAGCCACCCGCACAAGC 61.432 66.667 0.00 0.00 41.38 4.01
2617 2930 4.715523 TAGCCACCCGCACAAGCC 62.716 66.667 0.00 0.00 41.38 4.35
2623 2936 4.690719 CCCGCACAAGCCCACGTA 62.691 66.667 0.00 0.00 37.52 3.57
2624 2937 3.419759 CCGCACAAGCCCACGTAC 61.420 66.667 0.00 0.00 37.52 3.67
2625 2938 2.663520 CGCACAAGCCCACGTACA 60.664 61.111 0.00 0.00 37.52 2.90
2626 2939 2.032634 CGCACAAGCCCACGTACAT 61.033 57.895 0.00 0.00 37.52 2.29
2627 2940 1.501741 GCACAAGCCCACGTACATG 59.498 57.895 0.00 0.00 33.58 3.21
2628 2941 1.234615 GCACAAGCCCACGTACATGT 61.235 55.000 2.69 2.69 33.58 3.21
2629 2942 0.796312 CACAAGCCCACGTACATGTC 59.204 55.000 0.00 0.00 0.00 3.06
2630 2943 0.321298 ACAAGCCCACGTACATGTCC 60.321 55.000 0.00 0.00 0.00 4.02
2631 2944 1.079405 AAGCCCACGTACATGTCCG 60.079 57.895 9.49 9.49 0.00 4.79
2632 2945 1.823169 AAGCCCACGTACATGTCCGT 61.823 55.000 11.00 11.00 37.90 4.69
2633 2946 0.966875 AGCCCACGTACATGTCCGTA 60.967 55.000 16.46 0.00 35.16 4.02
2634 2947 0.108709 GCCCACGTACATGTCCGTAA 60.109 55.000 16.46 0.00 35.16 3.18
2635 2948 1.632422 CCCACGTACATGTCCGTAAC 58.368 55.000 16.46 0.60 35.16 2.50
2636 2949 1.067706 CCCACGTACATGTCCGTAACA 60.068 52.381 16.46 0.00 43.51 2.41
2637 2950 1.987770 CCACGTACATGTCCGTAACAC 59.012 52.381 16.46 0.00 41.75 3.32
2638 2951 1.987770 CACGTACATGTCCGTAACACC 59.012 52.381 16.46 0.00 41.75 4.16
2639 2952 1.612950 ACGTACATGTCCGTAACACCA 59.387 47.619 15.33 0.00 41.75 4.17
2640 2953 2.256174 CGTACATGTCCGTAACACCAG 58.744 52.381 0.00 0.00 41.75 4.00
2641 2954 1.997606 GTACATGTCCGTAACACCAGC 59.002 52.381 0.00 0.00 41.75 4.85
2642 2955 0.669318 ACATGTCCGTAACACCAGCG 60.669 55.000 0.00 0.00 41.75 5.18
2643 2956 1.740296 ATGTCCGTAACACCAGCGC 60.740 57.895 0.00 0.00 41.75 5.92
2644 2957 2.356553 GTCCGTAACACCAGCGCA 60.357 61.111 11.47 0.00 0.00 6.09
2645 2958 1.740296 GTCCGTAACACCAGCGCAT 60.740 57.895 11.47 0.00 0.00 4.73
2646 2959 0.458889 GTCCGTAACACCAGCGCATA 60.459 55.000 11.47 0.00 0.00 3.14
2647 2960 0.246910 TCCGTAACACCAGCGCATAA 59.753 50.000 11.47 0.00 0.00 1.90
2648 2961 1.080298 CCGTAACACCAGCGCATAAA 58.920 50.000 11.47 0.00 0.00 1.40
2649 2962 1.668751 CCGTAACACCAGCGCATAAAT 59.331 47.619 11.47 0.00 0.00 1.40
2650 2963 2.096819 CCGTAACACCAGCGCATAAATT 59.903 45.455 11.47 0.20 0.00 1.82
2651 2964 3.350912 CGTAACACCAGCGCATAAATTC 58.649 45.455 11.47 0.00 0.00 2.17
2652 2965 3.063452 CGTAACACCAGCGCATAAATTCT 59.937 43.478 11.47 0.00 0.00 2.40
2653 2966 4.436852 CGTAACACCAGCGCATAAATTCTT 60.437 41.667 11.47 0.00 0.00 2.52
2654 2967 4.519540 AACACCAGCGCATAAATTCTTT 57.480 36.364 11.47 0.00 0.00 2.52
2655 2968 4.096732 ACACCAGCGCATAAATTCTTTC 57.903 40.909 11.47 0.00 0.00 2.62
2656 2969 3.119495 ACACCAGCGCATAAATTCTTTCC 60.119 43.478 11.47 0.00 0.00 3.13
2657 2970 2.097466 ACCAGCGCATAAATTCTTTCCG 59.903 45.455 11.47 0.00 0.00 4.30
2658 2971 2.097466 CCAGCGCATAAATTCTTTCCGT 59.903 45.455 11.47 0.00 0.00 4.69
2659 2972 3.311322 CCAGCGCATAAATTCTTTCCGTA 59.689 43.478 11.47 0.00 0.00 4.02
2660 2973 4.201871 CCAGCGCATAAATTCTTTCCGTAA 60.202 41.667 11.47 0.00 0.00 3.18
2661 2974 4.963953 CAGCGCATAAATTCTTTCCGTAAG 59.036 41.667 11.47 0.00 35.04 2.34
2662 2975 4.634443 AGCGCATAAATTCTTTCCGTAAGT 59.366 37.500 11.47 0.00 35.28 2.24
2663 2976 4.962151 GCGCATAAATTCTTTCCGTAAGTC 59.038 41.667 0.30 0.00 35.28 3.01
2664 2977 5.220605 GCGCATAAATTCTTTCCGTAAGTCT 60.221 40.000 0.30 0.00 35.28 3.24
2665 2978 6.019318 GCGCATAAATTCTTTCCGTAAGTCTA 60.019 38.462 0.30 0.00 35.28 2.59
2666 2979 7.556433 CGCATAAATTCTTTCCGTAAGTCTAG 58.444 38.462 0.00 0.00 35.28 2.43
2667 2980 7.345943 GCATAAATTCTTTCCGTAAGTCTAGC 58.654 38.462 0.00 0.00 35.28 3.42
2668 2981 7.011109 GCATAAATTCTTTCCGTAAGTCTAGCA 59.989 37.037 0.00 0.00 35.28 3.49
2669 2982 9.046296 CATAAATTCTTTCCGTAAGTCTAGCAT 57.954 33.333 0.00 0.00 35.28 3.79
2670 2983 7.923414 AAATTCTTTCCGTAAGTCTAGCATT 57.077 32.000 0.00 0.00 35.28 3.56
2672 2985 9.614792 AAATTCTTTCCGTAAGTCTAGCATTAT 57.385 29.630 0.00 0.00 35.28 1.28
2673 2986 9.614792 AATTCTTTCCGTAAGTCTAGCATTATT 57.385 29.630 0.00 0.00 35.28 1.40
2674 2987 8.420374 TTCTTTCCGTAAGTCTAGCATTATTG 57.580 34.615 0.00 0.00 35.28 1.90
2675 2988 7.553334 TCTTTCCGTAAGTCTAGCATTATTGT 58.447 34.615 0.00 0.00 35.28 2.71
2676 2989 7.491372 TCTTTCCGTAAGTCTAGCATTATTGTG 59.509 37.037 0.00 0.00 35.28 3.33
2677 2990 6.459670 TCCGTAAGTCTAGCATTATTGTGA 57.540 37.500 0.00 0.00 0.00 3.58
2678 2991 6.270815 TCCGTAAGTCTAGCATTATTGTGAC 58.729 40.000 0.00 0.00 0.00 3.67
2679 2992 5.462398 CCGTAAGTCTAGCATTATTGTGACC 59.538 44.000 0.00 0.00 0.00 4.02
2680 2993 5.462398 CGTAAGTCTAGCATTATTGTGACCC 59.538 44.000 0.00 0.00 0.00 4.46
2681 2994 5.700402 AAGTCTAGCATTATTGTGACCCT 57.300 39.130 0.00 0.00 0.00 4.34
2682 2995 5.028549 AGTCTAGCATTATTGTGACCCTG 57.971 43.478 0.00 0.00 0.00 4.45
2683 2996 4.471386 AGTCTAGCATTATTGTGACCCTGT 59.529 41.667 0.00 0.00 0.00 4.00
2684 2997 5.045578 AGTCTAGCATTATTGTGACCCTGTT 60.046 40.000 0.00 0.00 0.00 3.16
2685 2998 5.294552 GTCTAGCATTATTGTGACCCTGTTC 59.705 44.000 0.00 0.00 0.00 3.18
2686 2999 4.307032 AGCATTATTGTGACCCTGTTCT 57.693 40.909 0.00 0.00 0.00 3.01
2687 3000 4.012374 AGCATTATTGTGACCCTGTTCTG 58.988 43.478 0.00 0.00 0.00 3.02
2688 3001 3.129287 GCATTATTGTGACCCTGTTCTGG 59.871 47.826 0.00 0.00 0.00 3.86
2689 3002 4.588899 CATTATTGTGACCCTGTTCTGGA 58.411 43.478 0.00 0.00 0.00 3.86
2690 3003 2.867109 ATTGTGACCCTGTTCTGGAG 57.133 50.000 0.00 0.00 0.00 3.86
2691 3004 0.764890 TTGTGACCCTGTTCTGGAGG 59.235 55.000 0.00 0.00 0.00 4.30
2692 3005 1.003233 GTGACCCTGTTCTGGAGGC 60.003 63.158 0.00 0.00 0.00 4.70
2693 3006 1.461268 TGACCCTGTTCTGGAGGCA 60.461 57.895 0.00 0.00 0.00 4.75
2694 3007 1.003233 GACCCTGTTCTGGAGGCAC 60.003 63.158 0.00 0.00 0.00 5.01
2695 3008 2.352805 CCCTGTTCTGGAGGCACC 59.647 66.667 0.00 0.00 39.54 5.01
2697 3010 1.302832 CCTGTTCTGGAGGCACCAC 60.303 63.158 0.00 0.00 44.64 4.16
2698 3011 1.302832 CTGTTCTGGAGGCACCACC 60.303 63.158 0.00 0.00 44.64 4.61
2699 3012 2.034221 GTTCTGGAGGCACCACCC 59.966 66.667 0.00 0.00 44.64 4.61
2700 3013 3.256960 TTCTGGAGGCACCACCCC 61.257 66.667 0.00 0.00 44.64 4.95
2706 3019 4.279507 AGGCACCACCCCCACCTA 62.280 66.667 0.00 0.00 40.58 3.08
2707 3020 4.043100 GGCACCACCCCCACCTAC 62.043 72.222 0.00 0.00 0.00 3.18
2708 3021 2.933834 GCACCACCCCCACCTACT 60.934 66.667 0.00 0.00 0.00 2.57
2709 3022 2.535331 GCACCACCCCCACCTACTT 61.535 63.158 0.00 0.00 0.00 2.24
2710 3023 1.202769 GCACCACCCCCACCTACTTA 61.203 60.000 0.00 0.00 0.00 2.24
2711 3024 0.909623 CACCACCCCCACCTACTTAG 59.090 60.000 0.00 0.00 0.00 2.18
2712 3025 0.495008 ACCACCCCCACCTACTTAGT 59.505 55.000 0.00 0.00 0.00 2.24
2713 3026 0.909623 CCACCCCCACCTACTTAGTG 59.090 60.000 0.00 0.00 34.91 2.74
2732 3045 2.759973 CGGAGCCAGCCTCAGGTA 60.760 66.667 0.00 0.00 42.62 3.08
2733 3046 2.790791 CGGAGCCAGCCTCAGGTAG 61.791 68.421 0.00 0.00 42.62 3.18
2734 3047 2.503546 GAGCCAGCCTCAGGTAGC 59.496 66.667 0.00 0.00 40.45 3.58
2735 3048 3.086600 AGCCAGCCTCAGGTAGCC 61.087 66.667 0.00 0.00 0.00 3.93
2736 3049 3.402681 GCCAGCCTCAGGTAGCCA 61.403 66.667 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.748005 CCTTAGATGCACCCCAACGG 60.748 60.000 0.00 0.00 37.81 4.44
3 4 0.251916 TCCTTAGATGCACCCCAACG 59.748 55.000 0.00 0.00 0.00 4.10
4 5 2.301346 CATCCTTAGATGCACCCCAAC 58.699 52.381 0.00 0.00 43.35 3.77
5 6 2.734755 CATCCTTAGATGCACCCCAA 57.265 50.000 0.00 0.00 43.35 4.12
32 33 4.425772 TCCATCCGTCACATATTCCCTAT 58.574 43.478 0.00 0.00 0.00 2.57
38 39 3.558931 TTGCTCCATCCGTCACATATT 57.441 42.857 0.00 0.00 0.00 1.28
39 40 3.777106 ATTGCTCCATCCGTCACATAT 57.223 42.857 0.00 0.00 0.00 1.78
44 45 1.199615 TGGTATTGCTCCATCCGTCA 58.800 50.000 0.00 0.00 0.00 4.35
46 47 2.038557 GGTATGGTATTGCTCCATCCGT 59.961 50.000 0.53 0.00 43.58 4.69
50 51 4.018415 GGTATGGGTATGGTATTGCTCCAT 60.018 45.833 3.02 3.02 46.00 3.41
52 53 3.618997 CGGTATGGGTATGGTATTGCTCC 60.619 52.174 0.00 0.00 0.00 4.70
100 102 6.965607 TCATACCCATAGATACGAGTATGGA 58.034 40.000 9.51 0.00 46.07 3.41
114 116 5.813672 GTGCGAGTAAAGTTTCATACCCATA 59.186 40.000 0.00 0.00 0.00 2.74
133 135 3.829044 CGTCGGGTATGGGTGCGA 61.829 66.667 0.00 0.00 0.00 5.10
165 167 1.784358 TCTACCCGTTGGATACCCAG 58.216 55.000 0.00 0.00 44.60 4.45
172 174 4.360951 ACTTTTTGATCTACCCGTTGGA 57.639 40.909 0.00 0.00 34.81 3.53
254 263 8.053026 ACTCATCTAACACGTCATTAAGTAGT 57.947 34.615 0.00 0.00 0.00 2.73
327 336 3.508402 TGTCGTGAGCTTGTGAACCTATA 59.492 43.478 0.00 0.00 0.00 1.31
364 396 9.173021 CCATTTATACTGACATGTGGAACTTAA 57.827 33.333 1.15 0.00 38.04 1.85
365 397 7.773224 CCCATTTATACTGACATGTGGAACTTA 59.227 37.037 1.15 0.00 38.04 2.24
367 399 6.122277 CCCATTTATACTGACATGTGGAACT 58.878 40.000 1.15 0.00 38.04 3.01
368 400 5.885912 ACCCATTTATACTGACATGTGGAAC 59.114 40.000 1.15 0.00 37.35 3.62
411 452 3.749981 GGCATGGCCTTGTATCCG 58.250 61.111 19.05 0.00 46.69 4.18
426 467 3.887868 CATGTTTAGGGCGCGGGC 61.888 66.667 17.31 17.31 38.90 6.13
431 472 2.422597 TGTCAAGTCATGTTTAGGGCG 58.577 47.619 0.00 0.00 0.00 6.13
438 479 4.706842 ACCCTACTTGTCAAGTCATGTT 57.293 40.909 21.40 1.68 41.77 2.71
439 480 4.321750 CGTACCCTACTTGTCAAGTCATGT 60.322 45.833 21.40 17.24 41.77 3.21
448 489 5.423886 AGTAGTACTCGTACCCTACTTGTC 58.576 45.833 0.00 0.00 36.75 3.18
497 538 2.103538 CGTACCCGTATGCGCAGT 59.896 61.111 18.32 10.61 36.67 4.40
502 543 1.668047 GCAGATACCGTACCCGTATGC 60.668 57.143 5.26 2.54 0.00 3.14
506 547 2.484062 CCGCAGATACCGTACCCGT 61.484 63.158 0.00 0.00 0.00 5.28
539 581 5.424895 TGCACCTAAGGATGCCAATTTTATT 59.575 36.000 5.41 0.00 41.33 1.40
540 582 4.961730 TGCACCTAAGGATGCCAATTTTAT 59.038 37.500 5.41 0.00 41.33 1.40
549 591 1.510480 GGCGATGCACCTAAGGATGC 61.510 60.000 0.00 0.00 42.40 3.91
562 604 3.680620 ATGTGGACACGGGGCGATG 62.681 63.158 0.00 0.00 0.00 3.84
563 605 3.399181 ATGTGGACACGGGGCGAT 61.399 61.111 0.00 0.00 0.00 4.58
564 606 4.386951 CATGTGGACACGGGGCGA 62.387 66.667 0.00 0.00 0.00 5.54
565 607 4.697756 ACATGTGGACACGGGGCG 62.698 66.667 0.00 0.00 0.00 6.13
566 608 2.746277 GACATGTGGACACGGGGC 60.746 66.667 1.15 0.00 0.00 5.80
567 609 2.046314 GGACATGTGGACACGGGG 60.046 66.667 1.15 0.00 0.00 5.73
568 610 2.434185 CGGACATGTGGACACGGG 60.434 66.667 1.15 0.00 0.00 5.28
569 611 3.118454 GCGGACATGTGGACACGG 61.118 66.667 1.15 0.00 0.00 4.94
570 612 3.118454 GGCGGACATGTGGACACG 61.118 66.667 1.15 0.92 0.00 4.49
571 613 3.118454 CGGCGGACATGTGGACAC 61.118 66.667 1.15 0.00 0.00 3.67
590 632 4.038080 CAGGCGGCAAAACGGACC 62.038 66.667 13.08 0.00 0.00 4.46
591 633 2.065906 TTTCAGGCGGCAAAACGGAC 62.066 55.000 13.08 0.00 0.00 4.79
592 634 1.824329 TTTCAGGCGGCAAAACGGA 60.824 52.632 13.08 0.00 0.00 4.69
593 635 1.660264 GTTTCAGGCGGCAAAACGG 60.660 57.895 19.17 0.57 0.00 4.44
594 636 0.526524 TTGTTTCAGGCGGCAAAACG 60.527 50.000 24.58 5.95 36.02 3.60
595 637 1.326245 GTTTGTTTCAGGCGGCAAAAC 59.674 47.619 24.00 24.00 33.43 2.43
596 638 1.066858 TGTTTGTTTCAGGCGGCAAAA 60.067 42.857 13.08 8.66 33.43 2.44
597 639 0.532573 TGTTTGTTTCAGGCGGCAAA 59.467 45.000 13.08 0.15 0.00 3.68
598 640 0.532573 TTGTTTGTTTCAGGCGGCAA 59.467 45.000 13.08 0.00 0.00 4.52
599 641 0.532573 TTTGTTTGTTTCAGGCGGCA 59.467 45.000 13.08 0.00 0.00 5.69
600 642 1.646189 TTTTGTTTGTTTCAGGCGGC 58.354 45.000 0.00 0.00 0.00 6.53
645 687 3.837570 AACTTCAACCGGGCCGACC 62.838 63.158 30.79 0.00 0.00 4.79
646 688 2.281276 AACTTCAACCGGGCCGAC 60.281 61.111 30.79 0.00 0.00 4.79
647 689 2.281208 CAACTTCAACCGGGCCGA 60.281 61.111 30.79 3.57 0.00 5.54
648 690 4.038080 GCAACTTCAACCGGGCCG 62.038 66.667 21.46 21.46 0.00 6.13
649 691 3.680786 GGCAACTTCAACCGGGCC 61.681 66.667 6.32 1.56 0.00 5.80
650 692 3.680786 GGGCAACTTCAACCGGGC 61.681 66.667 6.32 0.00 0.00 6.13
651 693 1.395826 TTTGGGCAACTTCAACCGGG 61.396 55.000 6.32 0.00 0.00 5.73
652 694 0.249280 GTTTGGGCAACTTCAACCGG 60.249 55.000 0.00 0.00 31.92 5.28
653 695 0.744281 AGTTTGGGCAACTTCAACCG 59.256 50.000 0.00 0.00 43.89 4.44
654 696 1.806247 GCAGTTTGGGCAACTTCAACC 60.806 52.381 0.00 0.00 43.89 3.77
655 697 1.570813 GCAGTTTGGGCAACTTCAAC 58.429 50.000 0.00 0.00 43.89 3.18
659 701 1.402107 CCAGGCAGTTTGGGCAACTT 61.402 55.000 0.00 0.00 43.89 2.66
668 710 0.398318 GGACTCTCACCAGGCAGTTT 59.602 55.000 0.00 0.00 0.00 2.66
690 735 4.980805 GAGGTGGCGAACGTGGCA 62.981 66.667 13.11 6.14 42.76 4.92
767 815 1.077212 GGGAGAGTGCATGCATGGT 60.077 57.895 25.64 11.91 0.00 3.55
780 828 1.223501 ACTGATAGGGTCGAGGGAGA 58.776 55.000 0.00 0.00 0.00 3.71
831 894 5.922053 AGAAATTTATGGGGGTACTACGTC 58.078 41.667 0.00 0.00 0.00 4.34
1278 1371 3.561725 CAGAAGGATTAGGTCGATTTGGC 59.438 47.826 0.00 0.00 0.00 4.52
1302 1395 2.563620 TGCATGTCCATTTGCATTCACT 59.436 40.909 0.00 0.00 43.54 3.41
1511 1608 5.432645 AGGACTTTAATTAGGAGCTTCTGC 58.567 41.667 4.19 0.00 40.05 4.26
1757 1870 9.988350 ACGCACTAAAGAACTAATCAATTATTG 57.012 29.630 0.00 0.00 0.00 1.90
1794 1914 1.351707 GTTGTCACACGCACACAGG 59.648 57.895 0.00 0.00 0.00 4.00
1795 1915 1.351707 GGTTGTCACACGCACACAG 59.648 57.895 0.00 0.00 0.00 3.66
1796 1916 0.955919 TTGGTTGTCACACGCACACA 60.956 50.000 0.00 0.00 0.00 3.72
1797 1917 0.248054 CTTGGTTGTCACACGCACAC 60.248 55.000 0.00 0.00 0.00 3.82
1798 1918 1.372838 CCTTGGTTGTCACACGCACA 61.373 55.000 0.00 0.00 0.00 4.57
1799 1919 1.092921 TCCTTGGTTGTCACACGCAC 61.093 55.000 0.00 0.00 0.00 5.34
1800 1920 1.092921 GTCCTTGGTTGTCACACGCA 61.093 55.000 0.00 0.00 0.00 5.24
1801 1921 1.647084 GTCCTTGGTTGTCACACGC 59.353 57.895 0.00 0.00 0.00 5.34
1802 1922 0.462937 TGGTCCTTGGTTGTCACACG 60.463 55.000 0.00 0.00 0.00 4.49
1803 1923 1.880027 GATGGTCCTTGGTTGTCACAC 59.120 52.381 0.00 0.00 0.00 3.82
1804 1924 1.542328 CGATGGTCCTTGGTTGTCACA 60.542 52.381 0.00 0.00 0.00 3.58
1805 1925 1.156736 CGATGGTCCTTGGTTGTCAC 58.843 55.000 0.00 0.00 0.00 3.67
1809 1929 0.037697 TCGACGATGGTCCTTGGTTG 60.038 55.000 1.93 1.78 40.17 3.77
1812 1932 2.024176 AAATCGACGATGGTCCTTGG 57.976 50.000 11.83 0.00 40.17 3.61
1823 1943 5.052567 CGAACACCTTGATACTAAATCGACG 60.053 44.000 0.00 0.00 0.00 5.12
1824 1944 5.231568 CCGAACACCTTGATACTAAATCGAC 59.768 44.000 0.00 0.00 0.00 4.20
1839 1959 3.259064 CGATACATCAAACCGAACACCT 58.741 45.455 0.00 0.00 0.00 4.00
1840 1960 2.997986 ACGATACATCAAACCGAACACC 59.002 45.455 0.00 0.00 0.00 4.16
1867 1987 4.694982 TGTTGTTGATACACATGCGAAGAT 59.305 37.500 0.00 0.00 32.98 2.40
1882 2006 9.391006 AGTATAAGAAAACAGAGTTGTTGTTGA 57.609 29.630 0.00 0.00 46.54 3.18
1894 2019 6.645415 ACGGAGACACAAGTATAAGAAAACAG 59.355 38.462 0.00 0.00 0.00 3.16
1896 2021 7.417496 AACGGAGACACAAGTATAAGAAAAC 57.583 36.000 0.00 0.00 0.00 2.43
1901 2026 4.978186 TCGAACGGAGACACAAGTATAAG 58.022 43.478 0.00 0.00 0.00 1.73
1963 2236 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
1964 2237 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1965 2238 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1966 2239 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1967 2240 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1968 2241 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1969 2242 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1970 2243 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1971 2244 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
1972 2245 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
1973 2246 8.638565 GTTCATTTTGATGACAAGTATTTTCGG 58.361 33.333 0.00 0.00 37.32 4.30
1974 2247 9.179552 TGTTCATTTTGATGACAAGTATTTTCG 57.820 29.630 0.00 0.00 37.32 3.46
1980 2253 9.734620 CTCTTTTGTTCATTTTGATGACAAGTA 57.265 29.630 0.00 0.00 37.32 2.24
1981 2254 8.469200 TCTCTTTTGTTCATTTTGATGACAAGT 58.531 29.630 0.00 0.00 37.32 3.16
1982 2255 8.861033 TCTCTTTTGTTCATTTTGATGACAAG 57.139 30.769 0.00 0.00 37.32 3.16
1983 2256 9.820725 ATTCTCTTTTGTTCATTTTGATGACAA 57.179 25.926 0.00 0.00 0.00 3.18
1984 2257 9.251792 CATTCTCTTTTGTTCATTTTGATGACA 57.748 29.630 0.00 0.00 0.00 3.58
1985 2258 9.252962 ACATTCTCTTTTGTTCATTTTGATGAC 57.747 29.630 0.00 0.00 0.00 3.06
2089 2362 9.959749 GTCCAAAAGTACTTGTTATCAAAATGA 57.040 29.630 9.34 0.00 32.87 2.57
2090 2363 8.901748 CGTCCAAAAGTACTTGTTATCAAAATG 58.098 33.333 9.34 0.00 32.87 2.32
2091 2364 7.593644 GCGTCCAAAAGTACTTGTTATCAAAAT 59.406 33.333 9.34 0.00 32.87 1.82
2092 2365 6.913673 GCGTCCAAAAGTACTTGTTATCAAAA 59.086 34.615 9.34 0.00 32.87 2.44
2093 2366 6.038382 TGCGTCCAAAAGTACTTGTTATCAAA 59.962 34.615 9.34 0.00 32.87 2.69
2094 2367 5.527951 TGCGTCCAAAAGTACTTGTTATCAA 59.472 36.000 9.34 0.00 0.00 2.57
2095 2368 5.057819 TGCGTCCAAAAGTACTTGTTATCA 58.942 37.500 9.34 0.00 0.00 2.15
2096 2369 5.600908 TGCGTCCAAAAGTACTTGTTATC 57.399 39.130 9.34 0.07 0.00 1.75
2097 2370 5.106317 CCATGCGTCCAAAAGTACTTGTTAT 60.106 40.000 9.34 0.00 0.00 1.89
2098 2371 4.214545 CCATGCGTCCAAAAGTACTTGTTA 59.785 41.667 9.34 0.00 0.00 2.41
2099 2372 3.004315 CCATGCGTCCAAAAGTACTTGTT 59.996 43.478 9.34 3.24 0.00 2.83
2100 2373 2.552315 CCATGCGTCCAAAAGTACTTGT 59.448 45.455 9.34 0.00 0.00 3.16
2101 2374 2.811431 TCCATGCGTCCAAAAGTACTTG 59.189 45.455 9.34 0.00 0.00 3.16
2102 2375 3.074412 CTCCATGCGTCCAAAAGTACTT 58.926 45.455 1.12 1.12 0.00 2.24
2103 2376 2.038557 ACTCCATGCGTCCAAAAGTACT 59.961 45.455 0.00 0.00 0.00 2.73
2104 2377 2.423577 ACTCCATGCGTCCAAAAGTAC 58.576 47.619 0.00 0.00 0.00 2.73
2105 2378 2.851263 ACTCCATGCGTCCAAAAGTA 57.149 45.000 0.00 0.00 0.00 2.24
2106 2379 2.224426 TGTACTCCATGCGTCCAAAAGT 60.224 45.455 0.00 0.00 0.00 2.66
2107 2380 2.422597 TGTACTCCATGCGTCCAAAAG 58.577 47.619 0.00 0.00 0.00 2.27
2108 2381 2.552599 TGTACTCCATGCGTCCAAAA 57.447 45.000 0.00 0.00 0.00 2.44
2109 2382 2.552599 TTGTACTCCATGCGTCCAAA 57.447 45.000 0.00 0.00 0.00 3.28
2110 2383 2.550606 GTTTTGTACTCCATGCGTCCAA 59.449 45.455 0.00 0.00 0.00 3.53
2111 2384 2.147958 GTTTTGTACTCCATGCGTCCA 58.852 47.619 0.00 0.00 0.00 4.02
2112 2385 1.467342 GGTTTTGTACTCCATGCGTCC 59.533 52.381 0.00 0.00 0.00 4.79
2113 2386 2.147958 TGGTTTTGTACTCCATGCGTC 58.852 47.619 0.00 0.00 0.00 5.19
2114 2387 2.264005 TGGTTTTGTACTCCATGCGT 57.736 45.000 0.00 0.00 0.00 5.24
2115 2388 2.351350 GGTTGGTTTTGTACTCCATGCG 60.351 50.000 0.00 0.00 0.00 4.73
2116 2389 2.625790 TGGTTGGTTTTGTACTCCATGC 59.374 45.455 0.00 0.00 0.00 4.06
2117 2390 4.927978 TTGGTTGGTTTTGTACTCCATG 57.072 40.909 0.00 0.00 0.00 3.66
2118 2391 4.343814 CCTTTGGTTGGTTTTGTACTCCAT 59.656 41.667 0.00 0.00 0.00 3.41
2119 2392 3.702045 CCTTTGGTTGGTTTTGTACTCCA 59.298 43.478 0.00 0.00 0.00 3.86
2120 2393 3.069016 CCCTTTGGTTGGTTTTGTACTCC 59.931 47.826 0.00 0.00 0.00 3.85
2121 2394 3.702548 ACCCTTTGGTTGGTTTTGTACTC 59.297 43.478 0.00 0.00 44.75 2.59
2122 2395 3.715287 ACCCTTTGGTTGGTTTTGTACT 58.285 40.909 0.00 0.00 44.75 2.73
2123 2396 5.595257 TTACCCTTTGGTTGGTTTTGTAC 57.405 39.130 0.00 0.00 44.75 2.90
2132 2405 9.819267 TTGTAAAGTAAAATTACCCTTTGGTTG 57.181 29.630 0.00 0.00 44.75 3.77
2147 2421 8.659925 TGTTCATCCGTAAGTTGTAAAGTAAA 57.340 30.769 0.00 0.00 0.00 2.01
2148 2422 8.550376 GTTGTTCATCCGTAAGTTGTAAAGTAA 58.450 33.333 0.00 0.00 0.00 2.24
2149 2423 7.927629 AGTTGTTCATCCGTAAGTTGTAAAGTA 59.072 33.333 0.00 0.00 0.00 2.24
2150 2424 6.764560 AGTTGTTCATCCGTAAGTTGTAAAGT 59.235 34.615 0.00 0.00 0.00 2.66
2151 2425 7.042321 TCAGTTGTTCATCCGTAAGTTGTAAAG 60.042 37.037 0.00 0.00 0.00 1.85
2174 2448 4.649088 TGGTGTTCACGTCCTATATCAG 57.351 45.455 0.00 0.00 0.00 2.90
2182 2456 3.463944 CCCTATATTGGTGTTCACGTCC 58.536 50.000 2.42 0.00 0.00 4.79
2212 2512 4.681978 AAGGTCACTGGGTCGCGC 62.682 66.667 0.00 0.00 0.00 6.86
2213 2513 2.030562 AAAGGTCACTGGGTCGCG 59.969 61.111 0.00 0.00 0.00 5.87
2214 2514 2.617274 GCAAAGGTCACTGGGTCGC 61.617 63.158 0.00 0.00 0.00 5.19
2215 2515 0.817634 TTGCAAAGGTCACTGGGTCG 60.818 55.000 0.00 0.00 0.00 4.79
2216 2516 1.067060 GTTTGCAAAGGTCACTGGGTC 59.933 52.381 13.26 0.00 0.00 4.46
2220 2520 0.738389 ACGGTTTGCAAAGGTCACTG 59.262 50.000 13.26 8.81 0.00 3.66
2406 2719 2.541556 GAGTGGCACGTAGAGATTTCC 58.458 52.381 12.71 0.00 0.00 3.13
2420 2733 1.811679 GCCTTGACTAGCGAGTGGC 60.812 63.158 3.45 7.66 44.05 5.01
2425 2738 1.103803 ATTCGAGCCTTGACTAGCGA 58.896 50.000 0.00 0.00 0.00 4.93
2441 2754 1.144936 AGCTAGCCCGCTCACATTC 59.855 57.895 12.13 0.00 34.57 2.67
2454 2767 2.042464 TCACATAAGGAGGGCAGCTAG 58.958 52.381 0.00 0.00 0.00 3.42
2469 2782 3.704566 TCTTATCGGTTGGCTAGTCACAT 59.295 43.478 0.00 0.00 0.00 3.21
2470 2783 3.093814 TCTTATCGGTTGGCTAGTCACA 58.906 45.455 0.00 0.00 0.00 3.58
2471 2784 3.445857 GTCTTATCGGTTGGCTAGTCAC 58.554 50.000 0.00 0.00 0.00 3.67
2474 2787 2.463752 TGGTCTTATCGGTTGGCTAGT 58.536 47.619 0.00 0.00 0.00 2.57
2482 2795 4.647853 TGTAGCACTATTGGTCTTATCGGT 59.352 41.667 0.00 0.00 34.50 4.69
2483 2796 5.196341 TGTAGCACTATTGGTCTTATCGG 57.804 43.478 0.00 0.00 34.50 4.18
2484 2797 6.682746 AGATGTAGCACTATTGGTCTTATCG 58.317 40.000 0.00 0.00 34.50 2.92
2485 2798 7.751348 CGTAGATGTAGCACTATTGGTCTTATC 59.249 40.741 0.00 0.00 34.50 1.75
2486 2799 7.309255 CCGTAGATGTAGCACTATTGGTCTTAT 60.309 40.741 0.00 0.00 34.50 1.73
2487 2800 6.016527 CCGTAGATGTAGCACTATTGGTCTTA 60.017 42.308 0.00 0.00 34.50 2.10
2488 2801 5.221263 CCGTAGATGTAGCACTATTGGTCTT 60.221 44.000 0.00 0.00 34.50 3.01
2489 2802 4.278669 CCGTAGATGTAGCACTATTGGTCT 59.721 45.833 0.00 0.00 34.50 3.85
2490 2803 4.277672 TCCGTAGATGTAGCACTATTGGTC 59.722 45.833 0.00 0.00 34.50 4.02
2491 2804 4.037684 GTCCGTAGATGTAGCACTATTGGT 59.962 45.833 0.00 0.00 37.24 3.67
2492 2805 4.037565 TGTCCGTAGATGTAGCACTATTGG 59.962 45.833 0.00 0.00 0.00 3.16
2493 2806 5.183014 TGTCCGTAGATGTAGCACTATTG 57.817 43.478 0.00 0.00 0.00 1.90
2494 2807 5.847111 TTGTCCGTAGATGTAGCACTATT 57.153 39.130 0.00 0.00 0.00 1.73
2495 2808 5.847111 TTTGTCCGTAGATGTAGCACTAT 57.153 39.130 0.00 0.00 0.00 2.12
2496 2809 5.847111 ATTTGTCCGTAGATGTAGCACTA 57.153 39.130 0.00 0.00 0.00 2.74
2497 2810 4.737855 ATTTGTCCGTAGATGTAGCACT 57.262 40.909 0.00 0.00 0.00 4.40
2498 2811 4.494199 GCAATTTGTCCGTAGATGTAGCAC 60.494 45.833 0.00 0.00 0.00 4.40
2499 2812 3.621268 GCAATTTGTCCGTAGATGTAGCA 59.379 43.478 0.00 0.00 0.00 3.49
2500 2813 3.871594 AGCAATTTGTCCGTAGATGTAGC 59.128 43.478 0.00 0.00 0.00 3.58
2501 2814 5.173312 CGTAGCAATTTGTCCGTAGATGTAG 59.827 44.000 0.00 0.00 0.00 2.74
2502 2815 5.038683 CGTAGCAATTTGTCCGTAGATGTA 58.961 41.667 0.00 0.00 0.00 2.29
2503 2816 3.863424 CGTAGCAATTTGTCCGTAGATGT 59.137 43.478 0.00 0.00 0.00 3.06
2504 2817 3.245284 CCGTAGCAATTTGTCCGTAGATG 59.755 47.826 0.00 0.00 0.00 2.90
2505 2818 3.131577 TCCGTAGCAATTTGTCCGTAGAT 59.868 43.478 0.00 0.00 0.00 1.98
2506 2819 2.492881 TCCGTAGCAATTTGTCCGTAGA 59.507 45.455 0.00 0.00 0.00 2.59
2507 2820 2.601763 GTCCGTAGCAATTTGTCCGTAG 59.398 50.000 0.00 0.00 0.00 3.51
2508 2821 2.609350 GTCCGTAGCAATTTGTCCGTA 58.391 47.619 0.00 0.00 0.00 4.02
2509 2822 1.435577 GTCCGTAGCAATTTGTCCGT 58.564 50.000 0.00 0.00 0.00 4.69
2510 2823 0.368907 CGTCCGTAGCAATTTGTCCG 59.631 55.000 0.00 0.00 0.00 4.79
2511 2824 0.725117 CCGTCCGTAGCAATTTGTCC 59.275 55.000 0.00 0.00 0.00 4.02
2512 2825 1.659098 CTCCGTCCGTAGCAATTTGTC 59.341 52.381 0.00 0.00 0.00 3.18
2513 2826 1.722011 CTCCGTCCGTAGCAATTTGT 58.278 50.000 0.00 0.00 0.00 2.83
2514 2827 0.373716 GCTCCGTCCGTAGCAATTTG 59.626 55.000 0.00 0.00 38.63 2.32
2515 2828 0.743345 GGCTCCGTCCGTAGCAATTT 60.743 55.000 6.60 0.00 40.61 1.82
2516 2829 1.153429 GGCTCCGTCCGTAGCAATT 60.153 57.895 6.60 0.00 40.61 2.32
2517 2830 0.754217 TAGGCTCCGTCCGTAGCAAT 60.754 55.000 6.60 0.00 40.61 3.56
2518 2831 1.378911 TAGGCTCCGTCCGTAGCAA 60.379 57.895 6.60 0.00 40.61 3.91
2519 2832 2.117156 GTAGGCTCCGTCCGTAGCA 61.117 63.158 6.60 0.00 40.61 3.49
2520 2833 2.061182 CTGTAGGCTCCGTCCGTAGC 62.061 65.000 0.00 0.00 38.03 3.58
2521 2834 0.463295 TCTGTAGGCTCCGTCCGTAG 60.463 60.000 0.00 0.00 0.00 3.51
2522 2835 0.745845 GTCTGTAGGCTCCGTCCGTA 60.746 60.000 0.00 0.00 0.00 4.02
2523 2836 2.045131 GTCTGTAGGCTCCGTCCGT 61.045 63.158 0.00 0.00 0.00 4.69
2524 2837 1.749638 AGTCTGTAGGCTCCGTCCG 60.750 63.158 0.00 0.00 0.00 4.79
2525 2838 0.680280 TCAGTCTGTAGGCTCCGTCC 60.680 60.000 0.00 0.00 0.00 4.79
2526 2839 1.066303 CATCAGTCTGTAGGCTCCGTC 59.934 57.143 0.00 0.00 0.00 4.79
2527 2840 1.107114 CATCAGTCTGTAGGCTCCGT 58.893 55.000 0.00 0.00 0.00 4.69
2528 2841 1.107114 ACATCAGTCTGTAGGCTCCG 58.893 55.000 0.00 0.00 0.00 4.63
2529 2842 1.137872 CCACATCAGTCTGTAGGCTCC 59.862 57.143 0.00 0.00 0.00 4.70
2530 2843 1.472376 GCCACATCAGTCTGTAGGCTC 60.472 57.143 15.43 0.00 38.83 4.70
2531 2844 0.539051 GCCACATCAGTCTGTAGGCT 59.461 55.000 15.43 0.00 38.83 4.58
2532 2845 0.807667 CGCCACATCAGTCTGTAGGC 60.808 60.000 13.74 13.74 38.68 3.93
2533 2846 0.807667 GCGCCACATCAGTCTGTAGG 60.808 60.000 0.00 0.00 0.00 3.18
2534 2847 0.108662 TGCGCCACATCAGTCTGTAG 60.109 55.000 4.18 0.00 0.00 2.74
2535 2848 0.389817 GTGCGCCACATCAGTCTGTA 60.390 55.000 4.18 0.00 34.08 2.74
2536 2849 1.669115 GTGCGCCACATCAGTCTGT 60.669 57.895 4.18 0.00 34.08 3.41
2537 2850 1.375140 AGTGCGCCACATCAGTCTG 60.375 57.895 4.18 0.00 36.74 3.51
2538 2851 1.375140 CAGTGCGCCACATCAGTCT 60.375 57.895 4.18 0.00 36.74 3.24
2539 2852 3.031964 GCAGTGCGCCACATCAGTC 62.032 63.158 4.18 0.00 36.74 3.51
2540 2853 3.052082 GCAGTGCGCCACATCAGT 61.052 61.111 4.18 0.00 36.74 3.41
2541 2854 2.745100 AGCAGTGCGCCACATCAG 60.745 61.111 10.00 0.00 44.04 2.90
2542 2855 3.051479 CAGCAGTGCGCCACATCA 61.051 61.111 10.00 0.00 44.04 3.07
2543 2856 3.052082 ACAGCAGTGCGCCACATC 61.052 61.111 10.00 0.00 44.04 3.06
2544 2857 3.359523 CACAGCAGTGCGCCACAT 61.360 61.111 10.00 0.00 44.04 3.21
2545 2858 4.544047 TCACAGCAGTGCGCCACA 62.544 61.111 10.00 0.00 45.49 4.17
2546 2859 2.335052 TTTTCACAGCAGTGCGCCAC 62.335 55.000 10.00 3.02 45.49 5.01
2547 2860 1.454572 ATTTTCACAGCAGTGCGCCA 61.455 50.000 10.00 0.00 45.49 5.69
2548 2861 1.005294 CATTTTCACAGCAGTGCGCC 61.005 55.000 10.00 0.00 45.49 6.53
2549 2862 1.005294 CCATTTTCACAGCAGTGCGC 61.005 55.000 10.00 0.00 45.49 6.09
2550 2863 0.387622 CCCATTTTCACAGCAGTGCG 60.388 55.000 10.00 7.44 45.49 5.34
2551 2864 0.961019 TCCCATTTTCACAGCAGTGC 59.039 50.000 7.13 7.13 45.49 4.40
2553 2866 1.547372 GCATCCCATTTTCACAGCAGT 59.453 47.619 0.00 0.00 0.00 4.40
2554 2867 1.546923 TGCATCCCATTTTCACAGCAG 59.453 47.619 0.00 0.00 0.00 4.24
2555 2868 1.630223 TGCATCCCATTTTCACAGCA 58.370 45.000 0.00 0.00 0.00 4.41
2556 2869 2.093869 ACATGCATCCCATTTTCACAGC 60.094 45.455 0.00 0.00 29.71 4.40
2557 2870 3.880047 ACATGCATCCCATTTTCACAG 57.120 42.857 0.00 0.00 29.71 3.66
2558 2871 4.620589 AAACATGCATCCCATTTTCACA 57.379 36.364 0.00 0.00 29.71 3.58
2559 2872 5.389725 CGAAAAACATGCATCCCATTTTCAC 60.390 40.000 22.42 13.35 31.91 3.18
2560 2873 4.689812 CGAAAAACATGCATCCCATTTTCA 59.310 37.500 22.42 0.00 31.91 2.69
2561 2874 4.093261 CCGAAAAACATGCATCCCATTTTC 59.907 41.667 17.48 17.48 30.31 2.29
2562 2875 4.002316 CCGAAAAACATGCATCCCATTTT 58.998 39.130 0.00 2.16 29.71 1.82
2563 2876 3.260380 TCCGAAAAACATGCATCCCATTT 59.740 39.130 0.00 0.00 29.71 2.32
2564 2877 2.830923 TCCGAAAAACATGCATCCCATT 59.169 40.909 0.00 0.00 29.71 3.16
2565 2878 2.428171 CTCCGAAAAACATGCATCCCAT 59.572 45.455 0.00 0.00 33.39 4.00
2566 2879 1.818060 CTCCGAAAAACATGCATCCCA 59.182 47.619 0.00 0.00 0.00 4.37
2567 2880 1.469767 GCTCCGAAAAACATGCATCCC 60.470 52.381 0.00 0.00 0.00 3.85
2568 2881 1.202114 TGCTCCGAAAAACATGCATCC 59.798 47.619 0.00 0.00 0.00 3.51
2569 2882 2.634982 TGCTCCGAAAAACATGCATC 57.365 45.000 0.00 0.00 0.00 3.91
2570 2883 2.297033 AGTTGCTCCGAAAAACATGCAT 59.703 40.909 0.00 0.00 0.00 3.96
2571 2884 1.680735 AGTTGCTCCGAAAAACATGCA 59.319 42.857 0.00 0.00 0.00 3.96
2572 2885 2.053627 CAGTTGCTCCGAAAAACATGC 58.946 47.619 0.00 0.00 0.00 4.06
2573 2886 3.354089 ACAGTTGCTCCGAAAAACATG 57.646 42.857 0.00 0.00 0.00 3.21
2574 2887 3.380004 TCAACAGTTGCTCCGAAAAACAT 59.620 39.130 8.58 0.00 0.00 2.71
2575 2888 2.750166 TCAACAGTTGCTCCGAAAAACA 59.250 40.909 8.58 0.00 0.00 2.83
2576 2889 3.105937 GTCAACAGTTGCTCCGAAAAAC 58.894 45.455 8.58 0.00 0.00 2.43
2577 2890 3.013921 AGTCAACAGTTGCTCCGAAAAA 58.986 40.909 8.58 0.00 0.00 1.94
2578 2891 2.354510 CAGTCAACAGTTGCTCCGAAAA 59.645 45.455 8.58 0.00 0.00 2.29
2579 2892 1.939934 CAGTCAACAGTTGCTCCGAAA 59.060 47.619 8.58 0.00 0.00 3.46
2580 2893 1.134521 ACAGTCAACAGTTGCTCCGAA 60.135 47.619 8.58 0.00 0.00 4.30
2581 2894 0.464036 ACAGTCAACAGTTGCTCCGA 59.536 50.000 8.58 0.00 0.00 4.55
2582 2895 2.061773 CTACAGTCAACAGTTGCTCCG 58.938 52.381 8.58 0.00 0.00 4.63
2583 2896 1.801178 GCTACAGTCAACAGTTGCTCC 59.199 52.381 8.58 0.00 33.12 4.70
2584 2897 1.801178 GGCTACAGTCAACAGTTGCTC 59.199 52.381 8.58 4.52 35.32 4.26
2585 2898 1.140852 TGGCTACAGTCAACAGTTGCT 59.859 47.619 8.58 6.43 35.32 3.91
2586 2899 1.264288 GTGGCTACAGTCAACAGTTGC 59.736 52.381 8.58 4.17 34.54 4.17
2587 2900 1.873591 GGTGGCTACAGTCAACAGTTG 59.126 52.381 6.99 6.99 37.30 3.16
2588 2901 1.202770 GGGTGGCTACAGTCAACAGTT 60.203 52.381 1.52 0.00 39.56 3.16
2589 2902 0.396811 GGGTGGCTACAGTCAACAGT 59.603 55.000 1.52 0.00 39.56 3.55
2590 2903 0.670546 CGGGTGGCTACAGTCAACAG 60.671 60.000 1.52 0.00 39.56 3.16
2591 2904 1.369692 CGGGTGGCTACAGTCAACA 59.630 57.895 1.52 0.00 39.56 3.33
2592 2905 2.033194 GCGGGTGGCTACAGTCAAC 61.033 63.158 1.52 0.00 36.43 3.18
2593 2906 2.345991 GCGGGTGGCTACAGTCAA 59.654 61.111 1.52 0.00 39.11 3.18
2594 2907 2.920384 TGCGGGTGGCTACAGTCA 60.920 61.111 1.52 0.00 44.05 3.41
2595 2908 2.434359 GTGCGGGTGGCTACAGTC 60.434 66.667 1.52 0.00 44.05 3.51
2596 2909 2.731691 CTTGTGCGGGTGGCTACAGT 62.732 60.000 1.52 0.00 44.05 3.55
2597 2910 2.031919 TTGTGCGGGTGGCTACAG 59.968 61.111 1.52 0.00 44.05 2.74
2598 2911 2.031919 CTTGTGCGGGTGGCTACA 59.968 61.111 1.52 0.00 44.05 2.74
2599 2912 3.431725 GCTTGTGCGGGTGGCTAC 61.432 66.667 0.00 0.00 44.05 3.58
2600 2913 4.715523 GGCTTGTGCGGGTGGCTA 62.716 66.667 0.00 0.00 44.05 3.93
2606 2919 4.690719 TACGTGGGCTTGTGCGGG 62.691 66.667 0.00 0.00 40.82 6.13
2607 2920 3.419759 GTACGTGGGCTTGTGCGG 61.420 66.667 0.00 0.00 40.82 5.69
2608 2921 2.032634 ATGTACGTGGGCTTGTGCG 61.033 57.895 0.00 0.00 40.82 5.34
2609 2922 1.234615 ACATGTACGTGGGCTTGTGC 61.235 55.000 19.05 0.00 38.76 4.57
2610 2923 0.796312 GACATGTACGTGGGCTTGTG 59.204 55.000 19.05 0.00 0.00 3.33
2611 2924 0.321298 GGACATGTACGTGGGCTTGT 60.321 55.000 19.05 3.16 0.00 3.16
2612 2925 1.358725 CGGACATGTACGTGGGCTTG 61.359 60.000 22.63 0.00 30.94 4.01
2613 2926 1.079405 CGGACATGTACGTGGGCTT 60.079 57.895 22.63 0.00 30.94 4.35
2614 2927 2.577059 CGGACATGTACGTGGGCT 59.423 61.111 22.63 0.00 30.94 5.19
2620 2933 2.256174 CTGGTGTTACGGACATGTACG 58.744 52.381 28.62 28.62 41.10 3.67
2621 2934 1.997606 GCTGGTGTTACGGACATGTAC 59.002 52.381 0.00 0.00 41.10 2.90
2622 2935 1.403116 CGCTGGTGTTACGGACATGTA 60.403 52.381 0.00 0.00 41.10 2.29
2623 2936 0.669318 CGCTGGTGTTACGGACATGT 60.669 55.000 0.00 0.00 41.10 3.21
2624 2937 1.966493 GCGCTGGTGTTACGGACATG 61.966 60.000 0.00 0.00 41.10 3.21
2625 2938 1.740296 GCGCTGGTGTTACGGACAT 60.740 57.895 0.00 0.00 41.10 3.06
2626 2939 2.356553 GCGCTGGTGTTACGGACA 60.357 61.111 0.00 0.00 35.42 4.02
2627 2940 0.458889 TATGCGCTGGTGTTACGGAC 60.459 55.000 9.73 0.00 0.00 4.79
2628 2941 0.246910 TTATGCGCTGGTGTTACGGA 59.753 50.000 9.73 0.00 0.00 4.69
2629 2942 1.080298 TTTATGCGCTGGTGTTACGG 58.920 50.000 9.73 0.00 0.00 4.02
2630 2943 3.063452 AGAATTTATGCGCTGGTGTTACG 59.937 43.478 9.73 0.00 0.00 3.18
2631 2944 4.616181 AGAATTTATGCGCTGGTGTTAC 57.384 40.909 9.73 0.00 0.00 2.50
2632 2945 5.392595 GGAAAGAATTTATGCGCTGGTGTTA 60.393 40.000 9.73 0.00 39.27 2.41
2633 2946 4.485163 GAAAGAATTTATGCGCTGGTGTT 58.515 39.130 9.73 0.00 39.27 3.32
2634 2947 3.119495 GGAAAGAATTTATGCGCTGGTGT 60.119 43.478 9.73 0.00 39.27 4.16
2635 2948 3.438360 GGAAAGAATTTATGCGCTGGTG 58.562 45.455 9.73 0.00 39.27 4.17
2636 2949 2.097466 CGGAAAGAATTTATGCGCTGGT 59.903 45.455 9.73 0.00 39.27 4.00
2637 2950 2.097466 ACGGAAAGAATTTATGCGCTGG 59.903 45.455 9.73 0.00 39.27 4.85
2638 2951 3.405170 ACGGAAAGAATTTATGCGCTG 57.595 42.857 9.73 0.00 39.27 5.18
2639 2952 4.634443 ACTTACGGAAAGAATTTATGCGCT 59.366 37.500 9.73 0.00 39.27 5.92
2640 2953 4.905269 ACTTACGGAAAGAATTTATGCGC 58.095 39.130 0.00 0.00 39.27 6.09
2641 2954 6.345920 AGACTTACGGAAAGAATTTATGCG 57.654 37.500 6.77 0.00 39.27 4.73
2642 2955 7.011109 TGCTAGACTTACGGAAAGAATTTATGC 59.989 37.037 6.77 0.00 39.27 3.14
2643 2956 8.420374 TGCTAGACTTACGGAAAGAATTTATG 57.580 34.615 6.77 0.00 39.27 1.90
2644 2957 9.614792 AATGCTAGACTTACGGAAAGAATTTAT 57.385 29.630 6.77 0.00 39.27 1.40
2646 2959 7.923414 AATGCTAGACTTACGGAAAGAATTT 57.077 32.000 6.77 0.00 43.98 1.82
2647 2960 9.614792 AATAATGCTAGACTTACGGAAAGAATT 57.385 29.630 6.77 0.00 38.67 2.17
2648 2961 9.046296 CAATAATGCTAGACTTACGGAAAGAAT 57.954 33.333 6.77 0.00 38.67 2.40
2649 2962 8.038944 ACAATAATGCTAGACTTACGGAAAGAA 58.961 33.333 6.77 0.00 38.67 2.52
2650 2963 7.491372 CACAATAATGCTAGACTTACGGAAAGA 59.509 37.037 6.77 0.00 38.67 2.52
2651 2964 7.491372 TCACAATAATGCTAGACTTACGGAAAG 59.509 37.037 0.00 0.00 41.33 2.62
2652 2965 7.277098 GTCACAATAATGCTAGACTTACGGAAA 59.723 37.037 0.00 0.00 0.00 3.13
2653 2966 6.755141 GTCACAATAATGCTAGACTTACGGAA 59.245 38.462 0.00 0.00 0.00 4.30
2654 2967 6.270815 GTCACAATAATGCTAGACTTACGGA 58.729 40.000 0.00 0.00 0.00 4.69
2655 2968 5.462398 GGTCACAATAATGCTAGACTTACGG 59.538 44.000 0.00 0.00 0.00 4.02
2656 2969 5.462398 GGGTCACAATAATGCTAGACTTACG 59.538 44.000 0.00 0.00 0.00 3.18
2657 2970 6.480320 CAGGGTCACAATAATGCTAGACTTAC 59.520 42.308 0.00 0.00 0.00 2.34
2658 2971 6.156256 ACAGGGTCACAATAATGCTAGACTTA 59.844 38.462 0.00 0.00 0.00 2.24
2659 2972 5.045578 ACAGGGTCACAATAATGCTAGACTT 60.046 40.000 0.00 0.00 0.00 3.01
2660 2973 4.471386 ACAGGGTCACAATAATGCTAGACT 59.529 41.667 0.00 0.00 0.00 3.24
2661 2974 4.770795 ACAGGGTCACAATAATGCTAGAC 58.229 43.478 0.00 0.00 0.00 2.59
2662 2975 5.189736 AGAACAGGGTCACAATAATGCTAGA 59.810 40.000 0.00 0.00 0.00 2.43
2663 2976 5.295292 CAGAACAGGGTCACAATAATGCTAG 59.705 44.000 0.00 0.00 0.00 3.42
2664 2977 5.185454 CAGAACAGGGTCACAATAATGCTA 58.815 41.667 0.00 0.00 0.00 3.49
2665 2978 4.012374 CAGAACAGGGTCACAATAATGCT 58.988 43.478 0.00 0.00 0.00 3.79
2666 2979 3.129287 CCAGAACAGGGTCACAATAATGC 59.871 47.826 0.00 0.00 0.00 3.56
2667 2980 4.588899 TCCAGAACAGGGTCACAATAATG 58.411 43.478 0.00 0.00 0.00 1.90
2668 2981 4.324563 CCTCCAGAACAGGGTCACAATAAT 60.325 45.833 0.00 0.00 0.00 1.28
2669 2982 3.009033 CCTCCAGAACAGGGTCACAATAA 59.991 47.826 0.00 0.00 0.00 1.40
2670 2983 2.571653 CCTCCAGAACAGGGTCACAATA 59.428 50.000 0.00 0.00 0.00 1.90
2671 2984 1.352352 CCTCCAGAACAGGGTCACAAT 59.648 52.381 0.00 0.00 0.00 2.71
2672 2985 0.764890 CCTCCAGAACAGGGTCACAA 59.235 55.000 0.00 0.00 0.00 3.33
2673 2986 1.768684 GCCTCCAGAACAGGGTCACA 61.769 60.000 0.00 0.00 0.00 3.58
2674 2987 1.003233 GCCTCCAGAACAGGGTCAC 60.003 63.158 0.00 0.00 0.00 3.67
2675 2988 1.461268 TGCCTCCAGAACAGGGTCA 60.461 57.895 0.00 0.00 0.00 4.02
2676 2989 1.003233 GTGCCTCCAGAACAGGGTC 60.003 63.158 0.00 0.00 0.00 4.46
2677 2990 2.529744 GGTGCCTCCAGAACAGGGT 61.530 63.158 0.00 0.00 35.97 4.34
2678 2991 2.352805 GGTGCCTCCAGAACAGGG 59.647 66.667 0.00 0.00 35.97 4.45
2679 2992 3.160585 TGGTGCCTCCAGAACAGG 58.839 61.111 0.00 0.00 41.93 4.00
2689 3002 4.279507 TAGGTGGGGGTGGTGCCT 62.280 66.667 0.00 0.00 37.43 4.75
2690 3003 4.043100 GTAGGTGGGGGTGGTGCC 62.043 72.222 0.00 0.00 0.00 5.01
2691 3004 1.202769 TAAGTAGGTGGGGGTGGTGC 61.203 60.000 0.00 0.00 0.00 5.01
2692 3005 0.909623 CTAAGTAGGTGGGGGTGGTG 59.090 60.000 0.00 0.00 0.00 4.17
2693 3006 0.495008 ACTAAGTAGGTGGGGGTGGT 59.505 55.000 0.00 0.00 0.00 4.16
2694 3007 0.909623 CACTAAGTAGGTGGGGGTGG 59.090 60.000 0.00 0.00 0.00 4.61
2701 3014 0.179108 GCTCCGCCACTAAGTAGGTG 60.179 60.000 0.00 0.00 35.20 4.00
2702 3015 2.200052 GCTCCGCCACTAAGTAGGT 58.800 57.895 0.00 0.00 0.00 3.08
2715 3028 2.759973 TACCTGAGGCTGGCTCCG 60.760 66.667 25.97 20.12 0.00 4.63
2716 3029 3.100503 GCTACCTGAGGCTGGCTCC 62.101 68.421 25.97 10.58 0.00 4.70
2717 3030 2.503546 GCTACCTGAGGCTGGCTC 59.496 66.667 22.95 22.95 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.