Multiple sequence alignment - TraesCS3B01G497200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G497200 chr3B 100.000 4970 0 0 1 4970 740547708 740542739 0.000000e+00 9178.0
1 TraesCS3B01G497200 chr3B 88.164 414 36 12 2619 3030 222318456 222318858 9.680000e-132 481.0
2 TraesCS3B01G497200 chr3B 92.735 234 12 4 3979 4208 740496864 740496632 2.870000e-87 333.0
3 TraesCS3B01G497200 chr3B 87.302 252 24 8 4431 4676 740518388 740518139 1.050000e-71 281.0
4 TraesCS3B01G497200 chr3B 84.436 257 31 6 4432 4683 740095833 740095581 1.380000e-60 244.0
5 TraesCS3B01G497200 chr3B 86.667 195 25 1 1963 2157 755664689 755664496 1.080000e-51 215.0
6 TraesCS3B01G497200 chr3B 82.645 242 37 4 4432 4672 740508114 740507877 5.040000e-50 209.0
7 TraesCS3B01G497200 chr3B 98.039 51 1 0 1841 1891 740545792 740545742 6.850000e-14 89.8
8 TraesCS3B01G497200 chr3B 98.039 51 1 0 1917 1967 740545868 740545818 6.850000e-14 89.8
9 TraesCS3B01G497200 chr3B 92.308 52 3 1 3925 3976 740496957 740496907 6.900000e-09 73.1
10 TraesCS3B01G497200 chrUn 93.892 1801 78 12 2186 3981 295855893 295854120 0.000000e+00 2687.0
11 TraesCS3B01G497200 chrUn 92.989 542 25 8 4431 4970 295853543 295853013 0.000000e+00 778.0
12 TraesCS3B01G497200 chrUn 91.652 563 28 7 567 1121 351523068 351522517 0.000000e+00 761.0
13 TraesCS3B01G497200 chrUn 92.034 477 33 3 1171 1647 473829986 473830457 0.000000e+00 665.0
14 TraesCS3B01G497200 chrUn 87.234 470 30 14 3984 4425 295854070 295853603 4.440000e-140 508.0
15 TraesCS3B01G497200 chrUn 88.475 295 32 2 244 537 351523361 351523068 6.120000e-94 355.0
16 TraesCS3B01G497200 chrUn 93.893 131 4 1 1 127 351523492 351523362 1.410000e-45 195.0
17 TraesCS3B01G497200 chrUn 97.170 106 3 0 1714 1819 295856159 295856054 3.950000e-41 180.0
18 TraesCS3B01G497200 chr3D 91.321 1544 67 28 2478 3981 557925656 557924140 0.000000e+00 2047.0
19 TraesCS3B01G497200 chr3D 87.816 1346 104 25 356 1690 557927574 557926278 0.000000e+00 1522.0
20 TraesCS3B01G497200 chr3D 92.647 544 23 11 4431 4970 557923545 557923015 0.000000e+00 767.0
21 TraesCS3B01G497200 chr3D 96.538 260 9 0 2160 2419 557925922 557925663 9.880000e-117 431.0
22 TraesCS3B01G497200 chr3D 82.688 491 34 19 3986 4425 557924088 557923598 6.030000e-104 388.0
23 TraesCS3B01G497200 chr3D 86.508 252 26 8 4431 4676 557917014 557916765 2.280000e-68 270.0
24 TraesCS3B01G497200 chr3D 87.692 195 22 2 1963 2157 482595410 482595218 5.010000e-55 226.0
25 TraesCS3B01G497200 chr3D 86.802 197 23 3 1963 2158 567043724 567043918 3.010000e-52 217.0
26 TraesCS3B01G497200 chr3D 95.690 116 5 0 1 116 557927925 557927810 2.360000e-43 187.0
27 TraesCS3B01G497200 chr3D 97.143 105 3 0 1714 1818 557926289 557926185 1.420000e-40 178.0
28 TraesCS3B01G497200 chr6D 87.500 440 34 11 2620 3038 82636264 82635825 5.780000e-134 488.0
29 TraesCS3B01G497200 chr6D 87.893 413 42 6 2615 3026 332499016 332499421 3.480000e-131 479.0
30 TraesCS3B01G497200 chr5D 87.351 419 41 10 2614 3031 442331793 442332200 2.090000e-128 470.0
31 TraesCS3B01G497200 chr5D 87.047 193 24 1 1966 2158 271336084 271335893 3.010000e-52 217.0
32 TraesCS3B01G497200 chr5D 80.791 177 33 1 349 524 408775412 408775236 2.410000e-28 137.0
33 TraesCS3B01G497200 chr5B 87.351 419 41 10 2614 3031 538542400 538542807 2.090000e-128 470.0
34 TraesCS3B01G497200 chr5B 95.868 121 4 1 126 246 38365124 38365243 1.410000e-45 195.0
35 TraesCS3B01G497200 chr5B 94.309 123 6 1 124 246 517216986 517217107 2.360000e-43 187.0
36 TraesCS3B01G497200 chr5B 100.000 33 0 0 4274 4306 263225770 263225738 1.490000e-05 62.1
37 TraesCS3B01G497200 chr6B 86.788 439 33 17 2620 3035 157664257 157663821 2.710000e-127 466.0
38 TraesCS3B01G497200 chr6A 86.517 445 29 17 2620 3035 99424049 99424491 1.260000e-125 460.0
39 TraesCS3B01G497200 chr6A 88.811 143 13 3 113 255 108948117 108947978 6.610000e-39 172.0
40 TraesCS3B01G497200 chr2B 84.173 417 55 9 2619 3031 208626807 208626398 1.300000e-105 394.0
41 TraesCS3B01G497200 chr2A 84.173 417 55 9 2619 3031 152008513 152008922 1.300000e-105 394.0
42 TraesCS3B01G497200 chr2A 86.735 196 25 1 1963 2158 20328881 20328687 3.010000e-52 217.0
43 TraesCS3B01G497200 chr2A 95.726 117 5 0 126 242 389220926 389220810 6.570000e-44 189.0
44 TraesCS3B01G497200 chr2D 83.933 417 56 9 2619 3031 149683886 149683477 6.030000e-104 388.0
45 TraesCS3B01G497200 chr2D 87.179 195 24 1 1963 2157 295166450 295166643 2.330000e-53 220.0
46 TraesCS3B01G497200 chr3A 87.550 249 23 8 4434 4676 693650081 693649835 1.050000e-71 281.0
47 TraesCS3B01G497200 chr3A 84.047 257 32 6 4432 4683 693616111 693615859 6.430000e-59 239.0
48 TraesCS3B01G497200 chr1A 86.802 197 23 3 1963 2158 555801142 555800948 3.010000e-52 217.0
49 TraesCS3B01G497200 chr1A 80.864 162 31 0 361 522 438651318 438651157 1.450000e-25 128.0
50 TraesCS3B01G497200 chr7D 86.667 195 25 1 1963 2157 121514229 121514036 1.080000e-51 215.0
51 TraesCS3B01G497200 chr7D 90.977 133 10 2 126 258 561921955 561921825 1.420000e-40 178.0
52 TraesCS3B01G497200 chr7D 91.837 49 4 0 356 404 446304127 446304079 8.930000e-08 69.4
53 TraesCS3B01G497200 chr7A 86.294 197 26 1 1963 2159 238582478 238582283 3.900000e-51 213.0
54 TraesCS3B01G497200 chr7B 93.130 131 8 1 126 255 436210790 436210920 1.830000e-44 191.0
55 TraesCS3B01G497200 chr4B 95.041 121 5 1 123 242 254413245 254413365 6.570000e-44 189.0
56 TraesCS3B01G497200 chr4B 92.913 127 7 2 126 251 636708196 636708071 3.060000e-42 183.0
57 TraesCS3B01G497200 chr4D 94.262 122 6 1 126 246 285317752 285317873 8.500000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G497200 chr3B 740542739 740547708 4969 True 3119.200000 9178 98.692667 1 4970 3 chr3B.!!$R6 4969
1 TraesCS3B01G497200 chrUn 295853013 295856159 3146 True 1038.250000 2687 92.821250 1714 4970 4 chrUn.!!$R1 3256
2 TraesCS3B01G497200 chrUn 351522517 351523492 975 True 437.000000 761 91.340000 1 1121 3 chrUn.!!$R2 1120
3 TraesCS3B01G497200 chr3D 557923015 557927925 4910 True 788.571429 2047 91.977571 1 4970 7 chr3D.!!$R3 4969

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 243 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.0 13.64 0.00 46.06 4.20 F
991 1032 0.035458 GAGCCTGCTGGTAAGTGTGT 59.965 55.0 11.69 0.00 35.27 3.72 F
2024 2184 0.107410 AGCAAAAGTGACACCGGTGA 60.107 50.0 40.21 17.43 0.00 4.02 F
2125 2285 0.517316 AGTTGAATGTCGGAAAGCGC 59.483 50.0 0.00 0.00 0.00 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2005 2165 0.107410 TCACCGGTGTCACTTTTGCT 60.107 50.000 32.74 0.00 0.00 3.91 R
2106 2266 0.517316 GCGCTTTCCGACATTCAACT 59.483 50.000 0.00 0.00 40.02 3.16 R
3964 4178 0.398098 TTAGAAGGCCGACCCTAGGG 60.398 60.000 27.36 27.36 45.62 3.53 R
4061 4325 1.625315 TCTGTACTTGCACAGGCTCAT 59.375 47.619 3.61 0.00 44.98 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 96 0.445436 GAACCACTGCAGCTCGAATG 59.555 55.000 15.27 2.87 0.00 2.67
101 106 0.453793 AGCTCGAATGACACTCTCCG 59.546 55.000 0.00 0.00 0.00 4.63
118 123 4.270834 TCTCCGCTACAGATTACACTCTT 58.729 43.478 0.00 0.00 0.00 2.85
127 132 7.646130 GCTACAGATTACACTCTTCACATCTAC 59.354 40.741 0.00 0.00 0.00 2.59
129 134 7.767261 ACAGATTACACTCTTCACATCTACTC 58.233 38.462 0.00 0.00 0.00 2.59
131 136 5.916661 TTACACTCTTCACATCTACTCCC 57.083 43.478 0.00 0.00 0.00 4.30
134 139 4.264172 ACACTCTTCACATCTACTCCCTCT 60.264 45.833 0.00 0.00 0.00 3.69
135 140 5.044772 ACACTCTTCACATCTACTCCCTCTA 60.045 44.000 0.00 0.00 0.00 2.43
136 141 6.068010 CACTCTTCACATCTACTCCCTCTAT 58.932 44.000 0.00 0.00 0.00 1.98
137 142 6.206634 CACTCTTCACATCTACTCCCTCTATC 59.793 46.154 0.00 0.00 0.00 2.08
139 144 4.022413 TCACATCTACTCCCTCTATCCG 57.978 50.000 0.00 0.00 0.00 4.18
140 145 3.085533 CACATCTACTCCCTCTATCCGG 58.914 54.545 0.00 0.00 0.00 5.14
141 146 2.987437 ACATCTACTCCCTCTATCCGGA 59.013 50.000 6.61 6.61 0.00 5.14
142 147 3.398292 ACATCTACTCCCTCTATCCGGAA 59.602 47.826 9.01 0.00 0.00 4.30
143 148 4.140994 ACATCTACTCCCTCTATCCGGAAA 60.141 45.833 9.01 0.00 0.00 3.13
144 149 4.743705 TCTACTCCCTCTATCCGGAAAT 57.256 45.455 9.01 0.00 0.00 2.17
145 150 5.855338 TCTACTCCCTCTATCCGGAAATA 57.145 43.478 9.01 0.00 0.00 1.40
146 151 5.568392 TCTACTCCCTCTATCCGGAAATAC 58.432 45.833 9.01 0.00 0.00 1.89
147 152 4.472690 ACTCCCTCTATCCGGAAATACT 57.527 45.455 9.01 0.00 0.00 2.12
149 154 4.589374 ACTCCCTCTATCCGGAAATACTTG 59.411 45.833 9.01 0.00 0.00 3.16
150 155 4.553678 TCCCTCTATCCGGAAATACTTGT 58.446 43.478 9.01 0.00 0.00 3.16
151 156 4.587684 TCCCTCTATCCGGAAATACTTGTC 59.412 45.833 9.01 0.00 0.00 3.18
152 157 4.547532 CCTCTATCCGGAAATACTTGTCG 58.452 47.826 9.01 0.00 0.00 4.35
153 158 4.547532 CTCTATCCGGAAATACTTGTCGG 58.452 47.826 9.01 0.00 41.80 4.79
156 161 3.681593 TCCGGAAATACTTGTCGGAAA 57.318 42.857 0.00 0.00 45.40 3.13
160 165 5.092781 CCGGAAATACTTGTCGGAAAAATG 58.907 41.667 0.00 0.00 42.94 2.32
161 166 5.092781 CGGAAATACTTGTCGGAAAAATGG 58.907 41.667 0.00 0.00 0.00 3.16
162 167 5.106475 CGGAAATACTTGTCGGAAAAATGGA 60.106 40.000 0.00 0.00 0.00 3.41
163 168 6.404293 CGGAAATACTTGTCGGAAAAATGGAT 60.404 38.462 0.00 0.00 0.00 3.41
167 172 8.519799 AATACTTGTCGGAAAAATGGATGTAT 57.480 30.769 0.00 0.00 0.00 2.29
168 173 6.436843 ACTTGTCGGAAAAATGGATGTATC 57.563 37.500 0.00 0.00 0.00 2.24
169 174 6.180472 ACTTGTCGGAAAAATGGATGTATCT 58.820 36.000 0.00 0.00 0.00 1.98
170 175 7.335627 ACTTGTCGGAAAAATGGATGTATCTA 58.664 34.615 0.00 0.00 0.00 1.98
171 176 7.495934 ACTTGTCGGAAAAATGGATGTATCTAG 59.504 37.037 0.00 0.00 0.00 2.43
175 180 7.657761 GTCGGAAAAATGGATGTATCTAGATGT 59.342 37.037 15.79 1.25 0.00 3.06
177 182 9.658799 CGGAAAAATGGATGTATCTAGATGTAT 57.341 33.333 15.79 9.11 0.00 2.29
215 220 9.859427 ATACATCCATTTTTATCCATTTATGCG 57.141 29.630 0.00 0.00 0.00 4.73
216 221 7.950512 ACATCCATTTTTATCCATTTATGCGA 58.049 30.769 0.00 0.00 0.00 5.10
217 222 7.867403 ACATCCATTTTTATCCATTTATGCGAC 59.133 33.333 0.00 0.00 0.00 5.19
218 223 7.340122 TCCATTTTTATCCATTTATGCGACA 57.660 32.000 0.00 0.00 0.00 4.35
219 224 7.776107 TCCATTTTTATCCATTTATGCGACAA 58.224 30.769 0.00 0.00 0.00 3.18
220 225 7.920151 TCCATTTTTATCCATTTATGCGACAAG 59.080 33.333 0.00 0.00 0.00 3.16
221 226 7.706179 CCATTTTTATCCATTTATGCGACAAGT 59.294 33.333 0.00 0.00 0.00 3.16
222 227 9.729023 CATTTTTATCCATTTATGCGACAAGTA 57.271 29.630 0.00 0.00 0.00 2.24
226 231 9.944663 TTTATCCATTTATGCGACAAGTAATTC 57.055 29.630 0.00 0.00 0.00 2.17
227 232 6.371809 TCCATTTATGCGACAAGTAATTCC 57.628 37.500 0.00 0.00 0.00 3.01
228 233 5.007234 TCCATTTATGCGACAAGTAATTCCG 59.993 40.000 0.00 0.00 0.00 4.30
229 234 4.868450 TTTATGCGACAAGTAATTCCGG 57.132 40.909 0.00 0.00 0.00 5.14
230 235 2.684001 ATGCGACAAGTAATTCCGGA 57.316 45.000 0.00 0.00 0.00 5.14
231 236 1.717194 TGCGACAAGTAATTCCGGAC 58.283 50.000 1.83 0.00 0.00 4.79
232 237 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
233 238 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
234 239 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
235 240 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
236 241 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
237 242 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
238 243 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
239 244 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
240 245 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
241 246 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
242 247 0.467659 ATTCCGGACGGAGGGAGTAG 60.468 60.000 13.64 0.00 46.06 2.57
243 248 1.856539 TTCCGGACGGAGGGAGTAGT 61.857 60.000 13.64 0.00 46.06 2.73
244 249 0.982852 TCCGGACGGAGGGAGTAGTA 60.983 60.000 9.76 0.00 39.76 1.82
245 250 0.110104 CCGGACGGAGGGAGTAGTAT 59.890 60.000 4.40 0.00 37.50 2.12
250 255 4.439968 GGACGGAGGGAGTAGTATTTTTG 58.560 47.826 0.00 0.00 0.00 2.44
254 259 6.301486 ACGGAGGGAGTAGTATTTTTGTTTT 58.699 36.000 0.00 0.00 0.00 2.43
303 308 6.919662 ACTCTACATTCAAAAATGCACACAAG 59.080 34.615 0.00 0.00 45.16 3.16
320 325 7.967854 TGCACACAAGCATCTTTATTATGTTAC 59.032 33.333 0.00 0.00 40.11 2.50
412 449 0.732571 CCAACGCGCACCATCTAATT 59.267 50.000 5.73 0.00 0.00 1.40
413 450 1.132262 CCAACGCGCACCATCTAATTT 59.868 47.619 5.73 0.00 0.00 1.82
423 460 1.949525 CCATCTAATTTGGTGGCCTCG 59.050 52.381 6.24 0.00 0.00 4.63
440 478 2.594592 GTCAAGCCGCCCAACAGT 60.595 61.111 0.00 0.00 0.00 3.55
450 488 0.247736 GCCCAACAGTGAGTCGAGAT 59.752 55.000 0.00 0.00 0.00 2.75
458 496 3.761218 ACAGTGAGTCGAGATCATCAACT 59.239 43.478 0.00 0.00 0.00 3.16
474 512 3.085533 TCAACTGGTCTAGCAGACTCTC 58.914 50.000 15.62 0.00 44.46 3.20
475 513 2.822561 CAACTGGTCTAGCAGACTCTCA 59.177 50.000 15.62 0.00 44.46 3.27
482 520 1.938657 TAGCAGACTCTCAGCACGCC 61.939 60.000 0.00 0.00 30.69 5.68
500 538 4.156622 CCGCATGCACACGCTCTG 62.157 66.667 19.57 0.00 39.64 3.35
504 542 1.792301 CATGCACACGCTCTGGAAG 59.208 57.895 0.00 0.00 39.64 3.46
532 570 1.854227 GCCATCTTCCGCAGTAGTAC 58.146 55.000 0.00 0.00 0.00 2.73
537 575 0.589229 CTTCCGCAGTAGTACTCGCG 60.589 60.000 26.48 26.48 41.70 5.87
549 587 4.943142 AGTACTCGCGGCTATATTACTC 57.057 45.455 6.13 0.00 0.00 2.59
550 588 4.321718 AGTACTCGCGGCTATATTACTCA 58.678 43.478 6.13 0.00 0.00 3.41
552 590 3.409570 ACTCGCGGCTATATTACTCAGA 58.590 45.455 6.13 0.00 0.00 3.27
553 591 3.437395 ACTCGCGGCTATATTACTCAGAG 59.563 47.826 6.13 0.00 0.00 3.35
554 592 3.409570 TCGCGGCTATATTACTCAGAGT 58.590 45.455 6.13 8.50 0.00 3.24
555 593 4.572909 TCGCGGCTATATTACTCAGAGTA 58.427 43.478 6.13 6.15 0.00 2.59
556 594 4.391216 TCGCGGCTATATTACTCAGAGTAC 59.609 45.833 10.02 0.00 28.93 2.73
584 622 7.423199 TGTAGTACTAGCATTTTACTCGATGG 58.577 38.462 1.87 0.00 0.00 3.51
631 669 8.101419 AGCTAATCCCCCTATTTTATAACGAAG 58.899 37.037 0.00 0.00 0.00 3.79
730 768 3.509967 ACTGACACACATCGATAAGGACA 59.490 43.478 0.00 0.00 0.00 4.02
778 817 0.168788 AATGTGGCGATGCGTGAAAG 59.831 50.000 0.00 0.00 0.00 2.62
779 818 2.202349 GTGGCGATGCGTGAAAGC 60.202 61.111 0.00 0.00 37.71 3.51
820 860 6.262273 AGGCATAAATATAAGACCAACCAACG 59.738 38.462 0.00 0.00 0.00 4.10
859 900 4.183865 CTGTCACTCACAAAGTCACAAGA 58.816 43.478 0.00 0.00 38.64 3.02
904 945 3.721706 CCCACCTCCTCACAGGGC 61.722 72.222 0.00 0.00 37.96 5.19
957 998 1.002087 GGTCACTGAAGGTGGTCGATT 59.998 52.381 0.00 0.00 45.38 3.34
969 1010 0.039527 GGTCGATTTTGTGGCGCTTT 60.040 50.000 7.64 0.00 0.00 3.51
991 1032 0.035458 GAGCCTGCTGGTAAGTGTGT 59.965 55.000 11.69 0.00 35.27 3.72
1005 1046 3.726517 GTGTTCTGGCGCATGCGT 61.727 61.111 37.54 0.00 44.10 5.24
1118 1168 3.766691 GGAGTTCCGGCTGCCGTA 61.767 66.667 35.82 21.92 46.80 4.02
1121 1171 4.382320 GTTCCGGCTGCCGTACCA 62.382 66.667 35.82 16.51 46.80 3.25
1122 1172 4.382320 TTCCGGCTGCCGTACCAC 62.382 66.667 35.82 0.00 46.80 4.16
1162 1212 4.610714 GAAGCCCGCCGGAGATCC 62.611 72.222 5.05 0.00 0.00 3.36
1197 1247 1.680522 ATCTCCGGCTCGTGATTGCT 61.681 55.000 0.00 0.00 0.00 3.91
1210 1260 2.527951 GATTGCTGGCACCTCCGACT 62.528 60.000 0.00 0.00 37.80 4.18
1219 1269 3.062466 CCTCCGACTCGCTGTCCA 61.062 66.667 0.00 0.00 42.49 4.02
1250 1303 3.393800 CTGCGACCAAGAAGAAGAAGAA 58.606 45.455 0.00 0.00 0.00 2.52
1251 1304 3.393800 TGCGACCAAGAAGAAGAAGAAG 58.606 45.455 0.00 0.00 0.00 2.85
1252 1305 2.158645 GCGACCAAGAAGAAGAAGAAGC 59.841 50.000 0.00 0.00 0.00 3.86
1253 1306 2.410053 CGACCAAGAAGAAGAAGAAGCG 59.590 50.000 0.00 0.00 0.00 4.68
1254 1307 3.654414 GACCAAGAAGAAGAAGAAGCGA 58.346 45.455 0.00 0.00 0.00 4.93
1255 1308 4.058817 GACCAAGAAGAAGAAGAAGCGAA 58.941 43.478 0.00 0.00 0.00 4.70
1302 1355 1.897615 GCATGCATGGAGGCCTCTC 60.898 63.158 31.36 21.36 39.25 3.20
1321 1374 6.171921 CCTCTCAATCCATCCTTCATATGAC 58.828 44.000 4.48 0.00 0.00 3.06
1331 1384 8.689061 TCCATCCTTCATATGACTTGATTTTTG 58.311 33.333 4.48 0.00 0.00 2.44
1347 1400 6.166982 TGATTTTTGATGAGCAATTGCATGA 58.833 32.000 30.89 14.98 45.16 3.07
1348 1401 6.651225 TGATTTTTGATGAGCAATTGCATGAA 59.349 30.769 30.89 14.84 45.16 2.57
1369 1422 7.111247 TGAATGATTTGGACTGTTTCAACTT 57.889 32.000 0.00 0.00 0.00 2.66
1371 1424 5.168526 TGATTTGGACTGTTTCAACTTCG 57.831 39.130 0.00 0.00 0.00 3.79
1372 1425 4.036262 TGATTTGGACTGTTTCAACTTCGG 59.964 41.667 0.00 0.00 0.00 4.30
1373 1426 2.702592 TGGACTGTTTCAACTTCGGT 57.297 45.000 0.00 0.00 0.00 4.69
1374 1427 2.993937 TGGACTGTTTCAACTTCGGTT 58.006 42.857 0.00 0.00 38.94 4.44
1391 1444 8.142994 ACTTCGGTTGAACTGCTATATATTTG 57.857 34.615 0.00 0.00 0.00 2.32
1395 1448 7.985184 TCGGTTGAACTGCTATATATTTGTTCT 59.015 33.333 16.04 0.00 35.99 3.01
1396 1449 8.064222 CGGTTGAACTGCTATATATTTGTTCTG 58.936 37.037 16.04 6.56 35.99 3.02
1397 1450 8.345565 GGTTGAACTGCTATATATTTGTTCTGG 58.654 37.037 16.04 0.00 35.99 3.86
1400 1453 7.715249 TGAACTGCTATATATTTGTTCTGGGAC 59.285 37.037 16.04 0.00 35.99 4.46
1401 1454 7.136822 ACTGCTATATATTTGTTCTGGGACA 57.863 36.000 0.00 0.00 0.00 4.02
1402 1455 7.573710 ACTGCTATATATTTGTTCTGGGACAA 58.426 34.615 0.00 0.00 38.70 3.18
1414 1467 6.065374 TGTTCTGGGACAATTTTAGTTGCTA 58.935 36.000 0.00 0.00 38.70 3.49
1419 1472 8.646900 TCTGGGACAATTTTAGTTGCTAAATTT 58.353 29.630 0.00 0.00 38.70 1.82
1420 1473 9.271828 CTGGGACAATTTTAGTTGCTAAATTTT 57.728 29.630 0.00 0.00 38.70 1.82
1453 1506 3.194005 TGAACTCTGTGTTTCCTGGTC 57.806 47.619 0.00 0.00 39.30 4.02
1460 1513 2.738846 CTGTGTTTCCTGGTCGATCTTG 59.261 50.000 0.00 0.00 0.00 3.02
1466 1519 3.081710 TCCTGGTCGATCTTGTGACTA 57.918 47.619 0.00 0.00 35.45 2.59
1482 1535 8.461222 TCTTGTGACTAGCAATTATTGATTTGG 58.539 33.333 9.36 0.00 0.00 3.28
1484 1537 5.682862 GTGACTAGCAATTATTGATTTGGCG 59.317 40.000 9.36 0.00 0.00 5.69
1499 1552 0.739462 TGGCGAAGTCAATAGTGGCG 60.739 55.000 0.00 0.00 42.02 5.69
1528 1581 4.241681 GTTCATCAGTCAGTCCAAGTCTC 58.758 47.826 0.00 0.00 0.00 3.36
1569 1622 6.724441 AGGACGGGAATGACAAGACATATATA 59.276 38.462 0.00 0.00 0.00 0.86
1570 1623 7.400339 AGGACGGGAATGACAAGACATATATAT 59.600 37.037 0.00 0.00 0.00 0.86
1604 1657 7.272084 CACTAGATTGCTTGTAGATTTGTTTGC 59.728 37.037 0.00 0.00 0.00 3.68
1608 1661 6.586868 TTGCTTGTAGATTTGTTTGCAAAG 57.413 33.333 13.26 0.00 46.30 2.77
1647 1700 8.682936 TGGCTATAGTGTAGTAGGTTTAGTAC 57.317 38.462 0.84 0.00 36.59 2.73
1696 1749 8.726870 TTAAATTTCTTAGATAGTGTTCCCCG 57.273 34.615 0.00 0.00 0.00 5.73
1697 1750 3.814005 TTCTTAGATAGTGTTCCCCGC 57.186 47.619 0.00 0.00 0.00 6.13
1698 1751 2.742348 TCTTAGATAGTGTTCCCCGCA 58.258 47.619 0.00 0.00 0.00 5.69
1699 1752 3.101437 TCTTAGATAGTGTTCCCCGCAA 58.899 45.455 0.00 0.00 0.00 4.85
1700 1753 3.516300 TCTTAGATAGTGTTCCCCGCAAA 59.484 43.478 0.00 0.00 0.00 3.68
1701 1754 2.871096 AGATAGTGTTCCCCGCAAAA 57.129 45.000 0.00 0.00 0.00 2.44
1702 1755 3.149005 AGATAGTGTTCCCCGCAAAAA 57.851 42.857 0.00 0.00 0.00 1.94
1770 1823 1.063942 TCCTGCTAGAAGTCGATCCCA 60.064 52.381 0.00 0.00 0.00 4.37
1819 1872 7.663905 TGCGGTATATGCCAAGTTTCTATAATT 59.336 33.333 10.70 0.00 0.00 1.40
1820 1873 8.512138 GCGGTATATGCCAAGTTTCTATAATTT 58.488 33.333 10.70 0.00 0.00 1.82
1841 1924 3.614092 TCGGGGACAGTTGTAGTAGTAG 58.386 50.000 0.00 0.00 0.00 2.57
1867 1963 6.855836 AGTATTTTGAAGTGTGGTATGCATG 58.144 36.000 10.16 0.00 0.00 4.06
1886 1982 4.022589 GCATGTGAACCCATCCTTCATATG 60.023 45.833 11.44 11.44 44.20 1.78
1888 1984 4.780815 TGTGAACCCATCCTTCATATGAC 58.219 43.478 4.48 0.00 30.46 3.06
1889 1985 4.474651 TGTGAACCCATCCTTCATATGACT 59.525 41.667 4.48 0.00 30.46 3.41
1891 1987 5.297776 GTGAACCCATCCTTCATATGACTTG 59.702 44.000 4.48 1.08 30.46 3.16
1892 1988 5.044919 TGAACCCATCCTTCATATGACTTGT 60.045 40.000 4.48 0.00 0.00 3.16
1893 1989 5.456921 ACCCATCCTTCATATGACTTGTT 57.543 39.130 4.48 0.00 0.00 2.83
1895 1991 6.969043 ACCCATCCTTCATATGACTTGTTTA 58.031 36.000 4.48 0.00 0.00 2.01
1896 1992 6.828785 ACCCATCCTTCATATGACTTGTTTAC 59.171 38.462 4.48 0.00 0.00 2.01
1898 1994 7.227512 CCCATCCTTCATATGACTTGTTTACTC 59.772 40.741 4.48 0.00 0.00 2.59
1900 1996 9.039870 CATCCTTCATATGACTTGTTTACTCTC 57.960 37.037 4.48 0.00 0.00 3.20
1901 1997 8.367660 TCCTTCATATGACTTGTTTACTCTCT 57.632 34.615 4.48 0.00 0.00 3.10
1902 1998 8.470805 TCCTTCATATGACTTGTTTACTCTCTC 58.529 37.037 4.48 0.00 0.00 3.20
1904 2000 7.718334 TCATATGACTTGTTTACTCTCTCCA 57.282 36.000 0.00 0.00 0.00 3.86
1905 2001 8.311395 TCATATGACTTGTTTACTCTCTCCAT 57.689 34.615 0.00 0.00 0.00 3.41
1906 2002 8.762645 TCATATGACTTGTTTACTCTCTCCATT 58.237 33.333 0.00 0.00 0.00 3.16
1907 2003 9.039870 CATATGACTTGTTTACTCTCTCCATTC 57.960 37.037 0.00 0.00 0.00 2.67
1908 2004 5.794894 TGACTTGTTTACTCTCTCCATTCC 58.205 41.667 0.00 0.00 0.00 3.01
1909 2005 5.306937 TGACTTGTTTACTCTCTCCATTCCA 59.693 40.000 0.00 0.00 0.00 3.53
1910 2006 6.183361 TGACTTGTTTACTCTCTCCATTCCAA 60.183 38.462 0.00 0.00 0.00 3.53
1911 2007 6.601332 ACTTGTTTACTCTCTCCATTCCAAA 58.399 36.000 0.00 0.00 0.00 3.28
1912 2008 7.060421 ACTTGTTTACTCTCTCCATTCCAAAA 58.940 34.615 0.00 0.00 0.00 2.44
1913 2009 7.725844 ACTTGTTTACTCTCTCCATTCCAAAAT 59.274 33.333 0.00 0.00 0.00 1.82
1914 2010 9.231297 CTTGTTTACTCTCTCCATTCCAAAATA 57.769 33.333 0.00 0.00 0.00 1.40
1915 2011 8.561738 TGTTTACTCTCTCCATTCCAAAATAC 57.438 34.615 0.00 0.00 0.00 1.89
1916 2012 8.160765 TGTTTACTCTCTCCATTCCAAAATACA 58.839 33.333 0.00 0.00 0.00 2.29
1917 2013 8.669243 GTTTACTCTCTCCATTCCAAAATACAG 58.331 37.037 0.00 0.00 0.00 2.74
1943 2103 6.855836 AGTATTTTGAAGTGTGGTATGCATG 58.144 36.000 10.16 0.00 0.00 4.06
1955 2115 2.423373 GGTATGCATGTGAACCCATCCT 60.423 50.000 10.16 0.00 0.00 3.24
1958 2118 1.075212 TGCATGTGAACCCATCCTTCA 59.925 47.619 0.00 0.00 0.00 3.02
1962 2122 5.163109 TGCATGTGAACCCATCCTTCATATA 60.163 40.000 0.00 0.00 30.71 0.86
1967 2127 7.410174 TGTGAACCCATCCTTCATATAACTTT 58.590 34.615 0.00 0.00 30.46 2.66
1968 2128 7.339212 TGTGAACCCATCCTTCATATAACTTTG 59.661 37.037 0.00 0.00 30.46 2.77
1970 2130 8.281531 TGAACCCATCCTTCATATAACTTTGAT 58.718 33.333 0.00 0.00 0.00 2.57
1971 2131 8.697507 AACCCATCCTTCATATAACTTTGATC 57.302 34.615 0.00 0.00 0.00 2.92
1972 2132 7.815383 ACCCATCCTTCATATAACTTTGATCA 58.185 34.615 0.00 0.00 0.00 2.92
1973 2133 8.451245 ACCCATCCTTCATATAACTTTGATCAT 58.549 33.333 0.00 0.00 0.00 2.45
1974 2134 9.964354 CCCATCCTTCATATAACTTTGATCATA 57.036 33.333 0.00 0.00 0.00 2.15
1995 2155 8.745464 TCATAAATTTAACTAACAAAACCGGC 57.255 30.769 0.00 0.00 0.00 6.13
1996 2156 8.578151 TCATAAATTTAACTAACAAAACCGGCT 58.422 29.630 0.00 0.00 0.00 5.52
1997 2157 9.843334 CATAAATTTAACTAACAAAACCGGCTA 57.157 29.630 0.00 0.00 0.00 3.93
1998 2158 9.844790 ATAAATTTAACTAACAAAACCGGCTAC 57.155 29.630 0.00 0.00 0.00 3.58
1999 2159 6.880942 ATTTAACTAACAAAACCGGCTACA 57.119 33.333 0.00 0.00 0.00 2.74
2000 2160 5.927954 TTAACTAACAAAACCGGCTACAG 57.072 39.130 0.00 0.00 0.00 2.74
2001 2161 2.148768 ACTAACAAAACCGGCTACAGC 58.851 47.619 0.00 0.00 41.14 4.40
2002 2162 2.147958 CTAACAAAACCGGCTACAGCA 58.852 47.619 0.00 0.00 44.36 4.41
2003 2163 0.951558 AACAAAACCGGCTACAGCAG 59.048 50.000 0.00 0.00 44.36 4.24
2009 2169 2.265739 CGGCTACAGCAGGAGCAA 59.734 61.111 16.02 0.00 45.49 3.91
2010 2170 1.375908 CGGCTACAGCAGGAGCAAA 60.376 57.895 16.02 0.00 45.49 3.68
2011 2171 0.955428 CGGCTACAGCAGGAGCAAAA 60.955 55.000 16.02 0.00 45.49 2.44
2012 2172 0.807496 GGCTACAGCAGGAGCAAAAG 59.193 55.000 16.02 0.00 45.49 2.27
2013 2173 1.528129 GCTACAGCAGGAGCAAAAGT 58.472 50.000 8.73 0.00 45.49 2.66
2014 2174 1.198637 GCTACAGCAGGAGCAAAAGTG 59.801 52.381 8.73 0.00 45.49 3.16
2015 2175 2.771089 CTACAGCAGGAGCAAAAGTGA 58.229 47.619 0.00 0.00 45.49 3.41
2016 2176 1.312815 ACAGCAGGAGCAAAAGTGAC 58.687 50.000 0.00 0.00 45.49 3.67
2017 2177 1.311859 CAGCAGGAGCAAAAGTGACA 58.688 50.000 0.00 0.00 45.49 3.58
2018 2178 1.002033 CAGCAGGAGCAAAAGTGACAC 60.002 52.381 0.00 0.00 45.49 3.67
2019 2179 0.312102 GCAGGAGCAAAAGTGACACC 59.688 55.000 0.84 0.00 41.58 4.16
2020 2180 0.588252 CAGGAGCAAAAGTGACACCG 59.412 55.000 0.84 0.00 0.00 4.94
2021 2181 0.535102 AGGAGCAAAAGTGACACCGG 60.535 55.000 0.00 0.00 0.00 5.28
2022 2182 0.818040 GGAGCAAAAGTGACACCGGT 60.818 55.000 0.00 0.00 0.00 5.28
2023 2183 0.307760 GAGCAAAAGTGACACCGGTG 59.692 55.000 32.83 32.83 0.00 4.94
2024 2184 0.107410 AGCAAAAGTGACACCGGTGA 60.107 50.000 40.21 17.43 0.00 4.02
2025 2185 0.736053 GCAAAAGTGACACCGGTGAA 59.264 50.000 40.21 24.45 0.00 3.18
2026 2186 1.336755 GCAAAAGTGACACCGGTGAAT 59.663 47.619 40.21 20.28 0.00 2.57
2027 2187 2.223711 GCAAAAGTGACACCGGTGAATT 60.224 45.455 40.21 21.55 0.00 2.17
2028 2188 3.628017 CAAAAGTGACACCGGTGAATTC 58.372 45.455 40.21 26.69 0.00 2.17
2029 2189 2.631160 AAGTGACACCGGTGAATTCA 57.369 45.000 40.21 28.93 0.00 2.57
2030 2190 2.859165 AGTGACACCGGTGAATTCAT 57.141 45.000 40.21 17.76 0.00 2.57
2031 2191 3.973206 AGTGACACCGGTGAATTCATA 57.027 42.857 40.21 14.60 0.00 2.15
2032 2192 4.487714 AGTGACACCGGTGAATTCATAT 57.512 40.909 40.21 21.37 0.00 1.78
2033 2193 4.843728 AGTGACACCGGTGAATTCATATT 58.156 39.130 40.21 18.74 0.00 1.28
2034 2194 4.876107 AGTGACACCGGTGAATTCATATTC 59.124 41.667 40.21 23.09 40.50 1.75
2035 2195 4.634004 GTGACACCGGTGAATTCATATTCA 59.366 41.667 40.21 25.34 45.99 2.57
2079 2239 3.739167 TTTTTCCCACCGCAGTCG 58.261 55.556 0.00 0.00 0.00 4.18
2089 2249 3.244105 CGCAGTCGGTCTTGTTGG 58.756 61.111 0.00 0.00 0.00 3.77
2090 2250 1.594293 CGCAGTCGGTCTTGTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
2091 2251 1.157870 CGCAGTCGGTCTTGTTGGTT 61.158 55.000 0.00 0.00 0.00 3.67
2092 2252 1.870580 CGCAGTCGGTCTTGTTGGTTA 60.871 52.381 0.00 0.00 0.00 2.85
2093 2253 2.215196 GCAGTCGGTCTTGTTGGTTAA 58.785 47.619 0.00 0.00 0.00 2.01
2094 2254 2.614983 GCAGTCGGTCTTGTTGGTTAAA 59.385 45.455 0.00 0.00 0.00 1.52
2095 2255 3.252458 GCAGTCGGTCTTGTTGGTTAAAT 59.748 43.478 0.00 0.00 0.00 1.40
2096 2256 4.261447 GCAGTCGGTCTTGTTGGTTAAATT 60.261 41.667 0.00 0.00 0.00 1.82
2097 2257 5.735070 GCAGTCGGTCTTGTTGGTTAAATTT 60.735 40.000 0.00 0.00 0.00 1.82
2098 2258 6.513720 GCAGTCGGTCTTGTTGGTTAAATTTA 60.514 38.462 0.00 0.00 0.00 1.40
2099 2259 7.590279 CAGTCGGTCTTGTTGGTTAAATTTAT 58.410 34.615 0.00 0.00 0.00 1.40
2100 2260 7.537306 CAGTCGGTCTTGTTGGTTAAATTTATG 59.463 37.037 0.00 0.00 0.00 1.90
2101 2261 6.804783 GTCGGTCTTGTTGGTTAAATTTATGG 59.195 38.462 0.00 0.00 0.00 2.74
2102 2262 6.490721 TCGGTCTTGTTGGTTAAATTTATGGT 59.509 34.615 0.00 0.00 0.00 3.55
2103 2263 7.014422 TCGGTCTTGTTGGTTAAATTTATGGTT 59.986 33.333 0.00 0.00 0.00 3.67
2104 2264 8.298140 CGGTCTTGTTGGTTAAATTTATGGTTA 58.702 33.333 0.00 0.00 0.00 2.85
2105 2265 9.984190 GGTCTTGTTGGTTAAATTTATGGTTAA 57.016 29.630 0.00 0.00 0.00 2.01
2118 2278 8.980143 AATTTATGGTTAAAGTTGAATGTCGG 57.020 30.769 0.00 0.00 31.07 4.79
2119 2279 7.747155 TTTATGGTTAAAGTTGAATGTCGGA 57.253 32.000 0.00 0.00 0.00 4.55
2120 2280 7.747155 TTATGGTTAAAGTTGAATGTCGGAA 57.253 32.000 0.00 0.00 0.00 4.30
2121 2281 6.642707 ATGGTTAAAGTTGAATGTCGGAAA 57.357 33.333 0.00 0.00 0.00 3.13
2122 2282 6.067263 TGGTTAAAGTTGAATGTCGGAAAG 57.933 37.500 0.00 0.00 0.00 2.62
2123 2283 4.915667 GGTTAAAGTTGAATGTCGGAAAGC 59.084 41.667 0.00 0.00 0.00 3.51
2124 2284 2.969443 AAGTTGAATGTCGGAAAGCG 57.031 45.000 0.00 0.00 0.00 4.68
2125 2285 0.517316 AGTTGAATGTCGGAAAGCGC 59.483 50.000 0.00 0.00 0.00 5.92
2126 2286 0.789383 GTTGAATGTCGGAAAGCGCG 60.789 55.000 0.00 0.00 0.00 6.86
2127 2287 0.946700 TTGAATGTCGGAAAGCGCGA 60.947 50.000 12.10 0.00 0.00 5.87
2128 2288 1.345176 GAATGTCGGAAAGCGCGAG 59.655 57.895 12.10 0.00 0.00 5.03
2143 2303 3.339884 CGCGAGCGCACTATATTTTAG 57.660 47.619 11.47 0.00 42.06 1.85
2144 2304 2.977829 CGCGAGCGCACTATATTTTAGA 59.022 45.455 11.47 0.00 42.06 2.10
2145 2305 3.424198 CGCGAGCGCACTATATTTTAGAA 59.576 43.478 11.47 0.00 42.06 2.10
2146 2306 4.090066 CGCGAGCGCACTATATTTTAGAAT 59.910 41.667 11.47 0.00 42.06 2.40
2147 2307 5.308927 GCGAGCGCACTATATTTTAGAATG 58.691 41.667 11.47 0.00 41.49 2.67
2148 2308 5.668866 GCGAGCGCACTATATTTTAGAATGG 60.669 44.000 11.47 0.00 41.49 3.16
2149 2309 5.633601 CGAGCGCACTATATTTTAGAATGGA 59.366 40.000 11.47 0.00 0.00 3.41
2150 2310 6.183360 CGAGCGCACTATATTTTAGAATGGAG 60.183 42.308 11.47 0.00 0.00 3.86
2151 2311 5.934625 AGCGCACTATATTTTAGAATGGAGG 59.065 40.000 11.47 0.00 0.00 4.30
2152 2312 5.122396 GCGCACTATATTTTAGAATGGAGGG 59.878 44.000 0.30 0.00 0.00 4.30
2153 2313 6.464222 CGCACTATATTTTAGAATGGAGGGA 58.536 40.000 0.00 0.00 0.00 4.20
2154 2314 6.591834 CGCACTATATTTTAGAATGGAGGGAG 59.408 42.308 0.00 0.00 0.00 4.30
2155 2315 7.454225 GCACTATATTTTAGAATGGAGGGAGT 58.546 38.462 0.00 0.00 0.00 3.85
2207 2376 6.293790 GCTAAATTCGTGTGGTTTTAGTTCCT 60.294 38.462 0.00 0.00 35.23 3.36
2214 2383 5.238650 CGTGTGGTTTTAGTTCCTGAATTCT 59.761 40.000 7.05 0.00 0.00 2.40
2273 2442 6.085573 TGTGACTGCAATTATTGATTTGTCG 58.914 36.000 9.36 0.00 0.00 4.35
2293 2462 2.012673 GAAGTCAATAGTGGCAGCCAG 58.987 52.381 16.83 2.14 32.34 4.85
2392 2561 6.590292 CGTCTGTTTCAACAATATACTCCACT 59.410 38.462 0.00 0.00 38.66 4.00
2393 2562 7.758076 CGTCTGTTTCAACAATATACTCCACTA 59.242 37.037 0.00 0.00 38.66 2.74
2394 2563 9.088512 GTCTGTTTCAACAATATACTCCACTAG 57.911 37.037 0.00 0.00 38.66 2.57
2395 2564 9.031537 TCTGTTTCAACAATATACTCCACTAGA 57.968 33.333 0.00 0.00 38.66 2.43
2396 2565 9.823647 CTGTTTCAACAATATACTCCACTAGAT 57.176 33.333 0.00 0.00 38.66 1.98
2401 2570 9.817809 TCAACAATATACTCCACTAGATTGTTC 57.182 33.333 10.36 0.00 42.53 3.18
2402 2571 8.755941 CAACAATATACTCCACTAGATTGTTCG 58.244 37.037 10.36 5.41 42.53 3.95
2436 2605 7.254795 GCTTGTACGATTATTAATGAGTTGGCT 60.255 37.037 0.00 0.00 0.00 4.75
2471 2640 5.527033 CCTATGGTCTAGGTTTAGTAACGC 58.473 45.833 0.00 0.00 35.00 4.84
2474 2643 3.696051 TGGTCTAGGTTTAGTAACGCGAT 59.304 43.478 15.93 2.34 35.00 4.58
2475 2644 4.201950 TGGTCTAGGTTTAGTAACGCGATC 60.202 45.833 15.93 2.00 35.00 3.69
2476 2645 4.201950 GGTCTAGGTTTAGTAACGCGATCA 60.202 45.833 15.93 0.00 35.00 2.92
2477 2646 5.335127 GTCTAGGTTTAGTAACGCGATCAA 58.665 41.667 15.93 0.00 35.00 2.57
2493 2662 5.678483 CGCGATCAAGAAATGGTTAATCAAG 59.322 40.000 0.00 0.00 0.00 3.02
2525 2694 7.607250 AGCTAATGACCTCGAAATTATCTAGG 58.393 38.462 0.00 6.64 44.66 3.02
2560 2729 4.332819 AGAAATGCTTAGTATTCACGCCAC 59.667 41.667 0.00 0.00 0.00 5.01
2561 2730 1.635844 TGCTTAGTATTCACGCCACG 58.364 50.000 0.00 0.00 0.00 4.94
2587 2756 1.208844 TGATTTTGGGCCGGGGTAGA 61.209 55.000 2.18 0.00 0.00 2.59
2589 2758 0.634465 ATTTTGGGCCGGGGTAGAAT 59.366 50.000 2.18 0.00 0.00 2.40
2611 2780 7.933033 AGAATTTTTCAAGTGTGGTATGCATTT 59.067 29.630 3.54 0.00 0.00 2.32
2614 2783 5.528043 TTCAAGTGTGGTATGCATTTGTT 57.472 34.783 3.54 0.00 35.79 2.83
2615 2784 4.869215 TCAAGTGTGGTATGCATTTGTTG 58.131 39.130 3.54 0.19 35.79 3.33
2765 2939 2.032681 AACCTGCCGTGGAAGCTC 59.967 61.111 0.00 0.00 0.00 4.09
2882 3056 1.375396 CGACCTCACCGGCATCAAA 60.375 57.895 0.00 0.00 35.61 2.69
3069 3254 4.147322 CGTCCGTTGCATGCGTCC 62.147 66.667 14.09 1.92 0.00 4.79
3324 3532 2.812499 GCCTTCGAGCCGGACATA 59.188 61.111 5.05 0.00 0.00 2.29
3666 3874 3.028366 GCTCGACCGCTTTCCTTGC 62.028 63.158 0.00 0.00 0.00 4.01
3671 3879 3.737172 CCGCTTTCCTTGCACCGG 61.737 66.667 0.00 0.00 0.00 5.28
3797 4005 4.025401 CGGCACCACAAGGAACGC 62.025 66.667 0.00 0.00 38.69 4.84
3981 4195 2.041819 CCCTAGGGTCGGCCTTCT 60.042 66.667 20.88 0.00 34.45 2.85
3982 4196 1.232216 CCCTAGGGTCGGCCTTCTA 59.768 63.158 20.88 0.00 34.45 2.10
3983 4197 0.398098 CCCTAGGGTCGGCCTTCTAA 60.398 60.000 20.88 0.00 34.45 2.10
3984 4198 1.718280 CCTAGGGTCGGCCTTCTAAT 58.282 55.000 5.77 0.00 34.45 1.73
4000 4261 3.759418 TCTAATTCGAGACTTCAGCACG 58.241 45.455 0.00 0.00 0.00 5.34
4029 4293 8.966868 TGTGTACTGTTATCTGATGAATCTACA 58.033 33.333 0.00 0.00 0.00 2.74
4061 4325 5.650703 TCTTCTACGTGTTCATCCATCTACA 59.349 40.000 0.00 0.00 0.00 2.74
4130 4395 0.607489 GTCAACCAGCAGCAGGTCAT 60.607 55.000 10.42 0.00 38.76 3.06
4131 4396 0.607217 TCAACCAGCAGCAGGTCATG 60.607 55.000 10.42 6.13 38.76 3.07
4132 4397 0.892358 CAACCAGCAGCAGGTCATGT 60.892 55.000 10.42 0.00 38.76 3.21
4133 4398 0.892358 AACCAGCAGCAGGTCATGTG 60.892 55.000 10.42 0.00 38.76 3.21
4134 4399 2.044555 CCAGCAGCAGGTCATGTGG 61.045 63.158 0.00 0.00 0.00 4.17
4136 4401 1.025113 CAGCAGCAGGTCATGTGGAG 61.025 60.000 0.00 0.00 0.00 3.86
4137 4402 1.002868 GCAGCAGGTCATGTGGAGT 60.003 57.895 0.00 0.00 0.00 3.85
4138 4403 0.250234 GCAGCAGGTCATGTGGAGTA 59.750 55.000 0.00 0.00 0.00 2.59
4139 4404 1.741732 GCAGCAGGTCATGTGGAGTAG 60.742 57.143 0.00 0.00 0.00 2.57
4140 4405 1.827344 CAGCAGGTCATGTGGAGTAGA 59.173 52.381 0.00 0.00 0.00 2.59
4141 4406 2.106566 AGCAGGTCATGTGGAGTAGAG 58.893 52.381 0.00 0.00 0.00 2.43
4170 4453 5.804979 CGATTCAACCAAACTTTGTTTCACT 59.195 36.000 0.88 0.00 0.00 3.41
4199 4482 0.945265 GAGATGGCTGCGCATCTCTC 60.945 60.000 31.69 20.78 46.14 3.20
4203 4510 1.449246 GGCTGCGCATCTCTCAACT 60.449 57.895 12.24 0.00 0.00 3.16
4205 4512 0.738762 GCTGCGCATCTCTCAACTGA 60.739 55.000 12.24 0.00 0.00 3.41
4215 4522 5.333952 GCATCTCTCAACTGAAAGACACTTG 60.334 44.000 0.00 0.00 37.43 3.16
4222 4529 4.170468 ACTGAAAGACACTTGTCCCAAT 57.830 40.909 5.73 0.00 45.85 3.16
4225 4532 4.277476 TGAAAGACACTTGTCCCAATTGT 58.723 39.130 4.43 0.31 45.85 2.71
4303 4612 9.765795 ACGTCTTATATTTTGATAAGAAGGGAG 57.234 33.333 17.49 7.56 45.53 4.30
4346 4655 6.712241 ATTCTCAACATACAGAACAAGTCG 57.288 37.500 0.00 0.00 31.42 4.18
4385 4694 4.393680 GGACAACAACAGTAACAACACAGA 59.606 41.667 0.00 0.00 0.00 3.41
4425 4739 3.455910 ACCTTCTCCAGTTGCATAGCATA 59.544 43.478 0.00 0.00 38.76 3.14
4427 4741 4.445453 CTTCTCCAGTTGCATAGCATACA 58.555 43.478 0.00 0.00 38.76 2.29
4428 4742 4.694760 TCTCCAGTTGCATAGCATACAT 57.305 40.909 0.00 0.00 38.76 2.29
4429 4743 4.383173 TCTCCAGTTGCATAGCATACATG 58.617 43.478 0.00 0.00 38.76 3.21
4482 4851 2.507484 TGTCACAGCTCATCCAAAAGG 58.493 47.619 0.00 0.00 0.00 3.11
4491 4860 3.674997 CTCATCCAAAAGGTTTCCTCGA 58.325 45.455 0.00 0.00 30.89 4.04
4492 4861 4.265073 CTCATCCAAAAGGTTTCCTCGAT 58.735 43.478 0.00 0.00 30.89 3.59
4493 4862 4.261801 TCATCCAAAAGGTTTCCTCGATC 58.738 43.478 0.00 0.00 30.89 3.69
4494 4863 3.780804 TCCAAAAGGTTTCCTCGATCA 57.219 42.857 0.00 0.00 30.89 2.92
4495 4864 4.301072 TCCAAAAGGTTTCCTCGATCAT 57.699 40.909 0.00 0.00 30.89 2.45
4496 4865 5.429681 TCCAAAAGGTTTCCTCGATCATA 57.570 39.130 0.00 0.00 30.89 2.15
4497 4866 5.183228 TCCAAAAGGTTTCCTCGATCATAC 58.817 41.667 0.00 0.00 30.89 2.39
4516 4888 1.272147 ACCCTTCTTCAAGTGGCATCC 60.272 52.381 0.00 0.00 0.00 3.51
4538 4910 1.864711 TGTTTCGGAGAAAACAGAGCG 59.135 47.619 0.00 0.00 45.90 5.03
4560 4932 5.007724 GCGAGGGTCAAGATAAAGGTAATTG 59.992 44.000 0.00 0.00 0.00 2.32
4587 4959 5.241403 TCAGGATATATTCGGTTTGCCAT 57.759 39.130 0.00 0.00 34.09 4.40
4588 4960 5.630121 TCAGGATATATTCGGTTTGCCATT 58.370 37.500 0.00 0.00 34.09 3.16
4589 4961 6.774673 TCAGGATATATTCGGTTTGCCATTA 58.225 36.000 0.00 0.00 34.09 1.90
4593 4965 7.174946 AGGATATATTCGGTTTGCCATTAGTTG 59.825 37.037 0.00 0.00 34.09 3.16
4625 4997 2.672961 TCAGATGGGCTAACAAGACG 57.327 50.000 0.00 0.00 0.00 4.18
4663 5036 2.432206 AGTTAAATGTTTGGTGCGCC 57.568 45.000 10.11 10.11 0.00 6.53
4737 5112 0.966370 AGCTAGAGAGAACCGGCGTT 60.966 55.000 6.01 0.00 33.88 4.84
4757 5132 5.574082 CGTTAAATCAACCACTTGTGTTCA 58.426 37.500 0.00 0.00 33.19 3.18
4792 5167 4.154918 CCACTAGGCAACATTCAGAAGAAC 59.845 45.833 0.00 0.00 36.39 3.01
4793 5168 4.756642 CACTAGGCAACATTCAGAAGAACA 59.243 41.667 0.00 0.00 36.39 3.18
4794 5169 5.239306 CACTAGGCAACATTCAGAAGAACAA 59.761 40.000 0.00 0.00 36.39 2.83
4795 5170 5.827797 ACTAGGCAACATTCAGAAGAACAAA 59.172 36.000 0.00 0.00 36.39 2.83
4796 5171 5.596836 AGGCAACATTCAGAAGAACAAAA 57.403 34.783 0.00 0.00 36.39 2.44
4797 5172 5.594926 AGGCAACATTCAGAAGAACAAAAG 58.405 37.500 0.00 0.00 36.39 2.27
4798 5173 5.360714 AGGCAACATTCAGAAGAACAAAAGA 59.639 36.000 0.00 0.00 36.39 2.52
4799 5174 6.042143 GGCAACATTCAGAAGAACAAAAGAA 58.958 36.000 0.00 0.00 36.39 2.52
4800 5175 6.534793 GGCAACATTCAGAAGAACAAAAGAAA 59.465 34.615 0.00 0.00 36.39 2.52
4801 5176 7.064490 GGCAACATTCAGAAGAACAAAAGAAAA 59.936 33.333 0.00 0.00 36.39 2.29
4852 5227 2.254546 TCTGGTTCACTGTTGCGATT 57.745 45.000 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 96 3.377485 TGTAATCTGTAGCGGAGAGTGTC 59.623 47.826 0.00 0.00 0.00 3.67
101 106 6.568869 AGATGTGAAGAGTGTAATCTGTAGC 58.431 40.000 0.00 0.00 0.00 3.58
118 123 3.244946 CCGGATAGAGGGAGTAGATGTGA 60.245 52.174 0.00 0.00 0.00 3.58
127 132 4.589374 ACAAGTATTTCCGGATAGAGGGAG 59.411 45.833 4.15 0.00 33.01 4.30
129 134 4.558898 CGACAAGTATTTCCGGATAGAGGG 60.559 50.000 4.15 0.00 0.00 4.30
131 136 4.277672 TCCGACAAGTATTTCCGGATAGAG 59.722 45.833 4.15 0.00 43.47 2.43
134 139 5.341872 TTTCCGACAAGTATTTCCGGATA 57.658 39.130 4.15 0.00 46.89 2.59
135 140 3.899052 TTCCGACAAGTATTTCCGGAT 57.101 42.857 4.15 0.00 46.89 4.18
136 141 3.681593 TTTCCGACAAGTATTTCCGGA 57.318 42.857 0.00 0.00 46.18 5.14
137 142 4.752661 TTTTTCCGACAAGTATTTCCGG 57.247 40.909 0.00 0.00 41.36 5.14
139 144 6.262193 TCCATTTTTCCGACAAGTATTTCC 57.738 37.500 0.00 0.00 0.00 3.13
140 145 7.312899 ACATCCATTTTTCCGACAAGTATTTC 58.687 34.615 0.00 0.00 0.00 2.17
141 146 7.227049 ACATCCATTTTTCCGACAAGTATTT 57.773 32.000 0.00 0.00 0.00 1.40
142 147 6.834168 ACATCCATTTTTCCGACAAGTATT 57.166 33.333 0.00 0.00 0.00 1.89
143 148 7.993183 AGATACATCCATTTTTCCGACAAGTAT 59.007 33.333 0.00 0.00 0.00 2.12
144 149 7.335627 AGATACATCCATTTTTCCGACAAGTA 58.664 34.615 0.00 0.00 0.00 2.24
145 150 6.180472 AGATACATCCATTTTTCCGACAAGT 58.820 36.000 0.00 0.00 0.00 3.16
146 151 6.683974 AGATACATCCATTTTTCCGACAAG 57.316 37.500 0.00 0.00 0.00 3.16
147 152 7.561251 TCTAGATACATCCATTTTTCCGACAA 58.439 34.615 0.00 0.00 0.00 3.18
149 154 7.657761 ACATCTAGATACATCCATTTTTCCGAC 59.342 37.037 4.54 0.00 0.00 4.79
150 155 7.735917 ACATCTAGATACATCCATTTTTCCGA 58.264 34.615 4.54 0.00 0.00 4.55
151 156 7.969536 ACATCTAGATACATCCATTTTTCCG 57.030 36.000 4.54 0.00 0.00 4.30
189 194 9.859427 CGCATAAATGGATAAAAATGGATGTAT 57.141 29.630 0.00 0.00 0.00 2.29
190 195 9.072375 TCGCATAAATGGATAAAAATGGATGTA 57.928 29.630 0.00 0.00 0.00 2.29
192 197 7.866898 TGTCGCATAAATGGATAAAAATGGATG 59.133 33.333 0.00 0.00 0.00 3.51
195 200 7.706179 ACTTGTCGCATAAATGGATAAAAATGG 59.294 33.333 0.00 0.00 0.00 3.16
196 201 8.633075 ACTTGTCGCATAAATGGATAAAAATG 57.367 30.769 0.00 0.00 0.00 2.32
200 205 9.944663 GAATTACTTGTCGCATAAATGGATAAA 57.055 29.630 0.00 0.00 0.00 1.40
201 206 8.564574 GGAATTACTTGTCGCATAAATGGATAA 58.435 33.333 0.00 0.00 0.00 1.75
202 207 7.095397 CGGAATTACTTGTCGCATAAATGGATA 60.095 37.037 0.00 0.00 0.00 2.59
203 208 6.293407 CGGAATTACTTGTCGCATAAATGGAT 60.293 38.462 0.00 0.00 0.00 3.41
204 209 5.007234 CGGAATTACTTGTCGCATAAATGGA 59.993 40.000 0.00 0.00 0.00 3.41
205 210 5.204833 CGGAATTACTTGTCGCATAAATGG 58.795 41.667 0.00 0.00 0.00 3.16
207 212 5.007332 GTCCGGAATTACTTGTCGCATAAAT 59.993 40.000 5.23 0.00 0.00 1.40
208 213 4.330620 GTCCGGAATTACTTGTCGCATAAA 59.669 41.667 5.23 0.00 0.00 1.40
209 214 3.866910 GTCCGGAATTACTTGTCGCATAA 59.133 43.478 5.23 0.00 0.00 1.90
210 215 3.450578 GTCCGGAATTACTTGTCGCATA 58.549 45.455 5.23 0.00 0.00 3.14
211 216 2.277084 GTCCGGAATTACTTGTCGCAT 58.723 47.619 5.23 0.00 0.00 4.73
212 217 1.717194 GTCCGGAATTACTTGTCGCA 58.283 50.000 5.23 0.00 0.00 5.10
213 218 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
214 219 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
215 220 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
216 221 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
217 222 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
218 223 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
219 224 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
220 225 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
221 226 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
222 227 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
223 228 0.467659 CTACTCCCTCCGTCCGGAAT 60.468 60.000 5.23 0.00 44.66 3.01
224 229 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
225 230 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
226 231 0.110104 ATACTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
227 232 1.978454 AATACTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
228 233 4.081254 ACAAAAATACTACTCCCTCCGTCC 60.081 45.833 0.00 0.00 0.00 4.79
229 234 5.082251 ACAAAAATACTACTCCCTCCGTC 57.918 43.478 0.00 0.00 0.00 4.79
230 235 5.494390 AACAAAAATACTACTCCCTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
231 236 6.812879 AAAACAAAAATACTACTCCCTCCG 57.187 37.500 0.00 0.00 0.00 4.63
412 449 2.281484 GCTTGACGAGGCCACCAA 60.281 61.111 5.01 2.08 0.00 3.67
413 450 4.329545 GGCTTGACGAGGCCACCA 62.330 66.667 5.01 0.00 46.84 4.17
423 460 2.594592 ACTGTTGGGCGGCTTGAC 60.595 61.111 9.56 5.96 0.00 3.18
433 470 3.119352 TGATGATCTCGACTCACTGTTGG 60.119 47.826 0.00 0.00 0.00 3.77
440 478 3.092301 ACCAGTTGATGATCTCGACTCA 58.908 45.455 10.45 0.00 44.00 3.41
450 488 3.435275 AGTCTGCTAGACCAGTTGATGA 58.565 45.455 11.24 0.00 46.18 2.92
458 496 1.272147 TGCTGAGAGTCTGCTAGACCA 60.272 52.381 0.00 4.13 46.18 4.02
525 563 5.486526 AGTAATATAGCCGCGAGTACTACT 58.513 41.667 8.23 2.56 0.00 2.57
532 570 3.437395 ACTCTGAGTAATATAGCCGCGAG 59.563 47.826 8.23 0.00 0.00 5.03
554 592 8.824781 CGAGTAAAATGCTAGTACTACAGAGTA 58.175 37.037 0.00 0.00 37.10 2.59
555 593 7.551974 TCGAGTAAAATGCTAGTACTACAGAGT 59.448 37.037 0.00 0.00 39.92 3.24
556 594 7.917597 TCGAGTAAAATGCTAGTACTACAGAG 58.082 38.462 0.00 0.00 0.00 3.35
566 604 5.679734 AATGCCATCGAGTAAAATGCTAG 57.320 39.130 0.00 0.00 0.00 3.42
569 607 5.168526 TGTAATGCCATCGAGTAAAATGC 57.831 39.130 0.00 0.00 0.00 3.56
584 622 5.985530 AGCTCCTTTTGTTCTTTTGTAATGC 59.014 36.000 0.00 0.00 0.00 3.56
730 768 2.871096 TACCTTTCAATGGCGTTCCT 57.129 45.000 0.00 0.00 0.00 3.36
778 817 2.293170 GCCTTCTATTCCCTGTTCAGC 58.707 52.381 0.00 0.00 0.00 4.26
779 818 3.634397 TGCCTTCTATTCCCTGTTCAG 57.366 47.619 0.00 0.00 0.00 3.02
820 860 0.251634 CAGTGGAGAAGAGGAAGGGC 59.748 60.000 0.00 0.00 0.00 5.19
859 900 1.752694 AGTGCCAAACCGCTTGTGT 60.753 52.632 0.00 0.00 32.65 3.72
916 957 0.027324 GAATTCTGCTAGCTGCGTGC 59.973 55.000 17.23 11.76 46.63 5.34
917 958 1.326852 CAGAATTCTGCTAGCTGCGTG 59.673 52.381 21.96 5.39 46.63 5.34
918 959 1.649664 CAGAATTCTGCTAGCTGCGT 58.350 50.000 21.96 4.60 46.63 5.24
919 960 0.935898 CCAGAATTCTGCTAGCTGCG 59.064 55.000 27.01 9.41 46.63 5.18
957 998 1.065600 GCTCACAAAGCGCCACAAA 59.934 52.632 2.29 0.00 42.21 2.83
969 1010 0.035317 CACTTACCAGCAGGCTCACA 59.965 55.000 0.00 0.00 39.06 3.58
976 1017 2.146342 CCAGAACACACTTACCAGCAG 58.854 52.381 0.00 0.00 0.00 4.24
980 1021 0.882927 GCGCCAGAACACACTTACCA 60.883 55.000 0.00 0.00 0.00 3.25
991 1032 1.375396 AACTACGCATGCGCCAGAA 60.375 52.632 38.15 18.06 44.19 3.02
1056 1106 1.135333 CTCACGGAAGAGAAGCTACCC 59.865 57.143 0.00 0.00 37.87 3.69
1059 1109 1.474478 CTGCTCACGGAAGAGAAGCTA 59.526 52.381 6.05 0.00 34.62 3.32
1085 1135 4.421554 CCTCTCCCAGCCCCTCCA 62.422 72.222 0.00 0.00 0.00 3.86
1098 1148 3.394836 GGCAGCCGGAACTCCTCT 61.395 66.667 5.05 0.00 0.00 3.69
1144 1194 4.610714 GATCTCCGGCGGGCTTCC 62.611 72.222 27.98 8.27 0.00 3.46
1145 1195 4.610714 GGATCTCCGGCGGGCTTC 62.611 72.222 27.98 18.78 0.00 3.86
1230 1280 3.393800 CTTCTTCTTCTTCTTGGTCGCA 58.606 45.455 0.00 0.00 0.00 5.10
1231 1281 2.158645 GCTTCTTCTTCTTCTTGGTCGC 59.841 50.000 0.00 0.00 0.00 5.19
1252 1305 3.372554 GAGTCCCGGGAAGGCTTCG 62.373 68.421 28.84 10.98 39.21 3.79
1253 1306 2.585153 GAGTCCCGGGAAGGCTTC 59.415 66.667 28.84 18.98 39.21 3.86
1254 1307 3.009714 GGAGTCCCGGGAAGGCTT 61.010 66.667 28.84 8.72 39.21 4.35
1255 1308 4.332543 TGGAGTCCCGGGAAGGCT 62.333 66.667 28.84 19.41 39.21 4.58
1298 1351 7.006865 AGTCATATGAAGGATGGATTGAGAG 57.993 40.000 7.07 0.00 0.00 3.20
1302 1355 7.997773 ATCAAGTCATATGAAGGATGGATTG 57.002 36.000 7.07 3.56 0.00 2.67
1321 1374 6.474819 TGCAATTGCTCATCAAAAATCAAG 57.525 33.333 29.37 0.00 42.66 3.02
1331 1384 6.292865 CCAAATCATTCATGCAATTGCTCATC 60.293 38.462 29.37 2.49 42.66 2.92
1347 1400 6.208644 CGAAGTTGAAACAGTCCAAATCATT 58.791 36.000 0.00 0.00 0.00 2.57
1348 1401 5.278463 CCGAAGTTGAAACAGTCCAAATCAT 60.278 40.000 0.00 0.00 0.00 2.45
1369 1422 7.985184 AGAACAAATATATAGCAGTTCAACCGA 59.015 33.333 18.39 0.00 38.18 4.69
1371 1424 8.345565 CCAGAACAAATATATAGCAGTTCAACC 58.654 37.037 18.39 2.06 38.18 3.77
1372 1425 8.345565 CCCAGAACAAATATATAGCAGTTCAAC 58.654 37.037 18.39 0.00 38.18 3.18
1373 1426 8.271458 TCCCAGAACAAATATATAGCAGTTCAA 58.729 33.333 18.39 5.97 38.18 2.69
1374 1427 7.715249 GTCCCAGAACAAATATATAGCAGTTCA 59.285 37.037 18.39 3.82 38.18 3.18
1375 1428 7.715249 TGTCCCAGAACAAATATATAGCAGTTC 59.285 37.037 12.51 12.51 36.52 3.01
1376 1429 7.573710 TGTCCCAGAACAAATATATAGCAGTT 58.426 34.615 0.00 0.00 0.00 3.16
1377 1430 7.136822 TGTCCCAGAACAAATATATAGCAGT 57.863 36.000 0.00 0.00 0.00 4.40
1378 1431 8.627208 ATTGTCCCAGAACAAATATATAGCAG 57.373 34.615 0.00 0.00 42.10 4.24
1379 1432 8.995027 AATTGTCCCAGAACAAATATATAGCA 57.005 30.769 0.00 0.00 42.10 3.49
1387 1440 6.705825 GCAACTAAAATTGTCCCAGAACAAAT 59.294 34.615 0.00 0.00 42.10 2.32
1391 1444 5.453567 AGCAACTAAAATTGTCCCAGAAC 57.546 39.130 0.00 0.00 31.83 3.01
1395 1448 9.050601 CAAAATTTAGCAACTAAAATTGTCCCA 57.949 29.630 14.53 0.00 39.03 4.37
1396 1449 9.051679 ACAAAATTTAGCAACTAAAATTGTCCC 57.948 29.630 18.81 0.00 41.05 4.46
1410 1463 7.208777 TCATGCAAAAGAGACAAAATTTAGCA 58.791 30.769 0.00 0.00 0.00 3.49
1414 1467 7.983484 AGAGTTCATGCAAAAGAGACAAAATTT 59.017 29.630 0.00 0.00 0.00 1.82
1419 1472 4.883585 ACAGAGTTCATGCAAAAGAGACAA 59.116 37.500 0.00 0.00 0.00 3.18
1420 1473 4.274214 CACAGAGTTCATGCAAAAGAGACA 59.726 41.667 0.00 0.00 0.00 3.41
1453 1506 7.468922 TCAATAATTGCTAGTCACAAGATCG 57.531 36.000 0.00 0.00 0.00 3.69
1460 1513 5.682862 CGCCAAATCAATAATTGCTAGTCAC 59.317 40.000 0.00 0.00 0.00 3.67
1466 1519 5.105797 TGACTTCGCCAAATCAATAATTGCT 60.106 36.000 0.00 0.00 0.00 3.91
1482 1535 0.739813 ACCGCCACTATTGACTTCGC 60.740 55.000 0.00 0.00 0.00 4.70
1484 1537 1.130561 GCAACCGCCACTATTGACTTC 59.869 52.381 0.00 0.00 0.00 3.01
1528 1581 3.318017 CGTCCTAGTTTTCAGTGTCAGG 58.682 50.000 0.00 0.00 0.00 3.86
1569 1622 6.054860 ACAAGCAATCTAGTGGAGTACAAT 57.945 37.500 0.00 0.00 0.00 2.71
1570 1623 5.483685 ACAAGCAATCTAGTGGAGTACAA 57.516 39.130 0.00 0.00 0.00 2.41
1575 1628 6.820656 ACAAATCTACAAGCAATCTAGTGGAG 59.179 38.462 0.00 0.00 0.00 3.86
1604 1657 3.755378 AGCCAACTCACTAAGCATCTTTG 59.245 43.478 0.00 0.00 0.00 2.77
1607 1660 5.600484 ACTATAGCCAACTCACTAAGCATCT 59.400 40.000 0.00 0.00 0.00 2.90
1608 1661 5.694006 CACTATAGCCAACTCACTAAGCATC 59.306 44.000 0.00 0.00 0.00 3.91
1674 1727 5.123936 GCGGGGAACACTATCTAAGAAATT 58.876 41.667 0.00 0.00 0.00 1.82
1678 1731 2.742348 TGCGGGGAACACTATCTAAGA 58.258 47.619 0.00 0.00 0.00 2.10
1679 1732 3.536956 TTGCGGGGAACACTATCTAAG 57.463 47.619 0.00 0.00 0.00 2.18
1680 1733 3.985019 TTTGCGGGGAACACTATCTAA 57.015 42.857 0.00 0.00 0.00 2.10
1681 1734 3.985019 TTTTGCGGGGAACACTATCTA 57.015 42.857 0.00 0.00 0.00 1.98
1682 1735 2.871096 TTTTGCGGGGAACACTATCT 57.129 45.000 0.00 0.00 0.00 1.98
1770 1823 3.439476 GCATTTCTCTTGCACTCAGTCAT 59.561 43.478 0.00 0.00 39.90 3.06
1819 1872 2.880443 ACTACTACAACTGTCCCCGAA 58.120 47.619 0.00 0.00 0.00 4.30
1820 1873 2.592102 ACTACTACAACTGTCCCCGA 57.408 50.000 0.00 0.00 0.00 5.14
1821 1874 3.350833 ACTACTACTACAACTGTCCCCG 58.649 50.000 0.00 0.00 0.00 5.73
1841 1924 7.372451 TGCATACCACACTTCAAAATACTAC 57.628 36.000 0.00 0.00 0.00 2.73
1867 1963 5.041191 AGTCATATGAAGGATGGGTTCAC 57.959 43.478 7.07 0.00 36.76 3.18
1886 1982 5.794894 TGGAATGGAGAGAGTAAACAAGTC 58.205 41.667 0.00 0.00 0.00 3.01
1888 1984 7.510549 TTTTGGAATGGAGAGAGTAAACAAG 57.489 36.000 0.00 0.00 0.00 3.16
1889 1985 9.010029 GTATTTTGGAATGGAGAGAGTAAACAA 57.990 33.333 0.00 0.00 0.00 2.83
1891 1987 8.561738 TGTATTTTGGAATGGAGAGAGTAAAC 57.438 34.615 0.00 0.00 0.00 2.01
1892 1988 8.383175 ACTGTATTTTGGAATGGAGAGAGTAAA 58.617 33.333 0.00 0.00 0.00 2.01
1893 1989 7.918076 ACTGTATTTTGGAATGGAGAGAGTAA 58.082 34.615 0.00 0.00 0.00 2.24
1895 1991 6.380079 ACTGTATTTTGGAATGGAGAGAGT 57.620 37.500 0.00 0.00 0.00 3.24
1896 1992 7.560368 ACTACTGTATTTTGGAATGGAGAGAG 58.440 38.462 0.00 0.00 0.00 3.20
1898 1994 9.838339 AATACTACTGTATTTTGGAATGGAGAG 57.162 33.333 0.00 0.00 44.35 3.20
1913 2009 9.647797 CATACCACACTTCAAAATACTACTGTA 57.352 33.333 0.00 0.00 0.00 2.74
1914 2010 7.119262 GCATACCACACTTCAAAATACTACTGT 59.881 37.037 0.00 0.00 0.00 3.55
1915 2011 7.119116 TGCATACCACACTTCAAAATACTACTG 59.881 37.037 0.00 0.00 0.00 2.74
1916 2012 7.165485 TGCATACCACACTTCAAAATACTACT 58.835 34.615 0.00 0.00 0.00 2.57
1917 2013 7.372451 TGCATACCACACTTCAAAATACTAC 57.628 36.000 0.00 0.00 0.00 2.73
1943 2103 7.556275 TCAAAGTTATATGAAGGATGGGTTCAC 59.444 37.037 0.00 0.00 36.76 3.18
1970 2130 8.578151 AGCCGGTTTTGTTAGTTAAATTTATGA 58.422 29.630 1.90 0.00 0.00 2.15
1971 2131 8.751302 AGCCGGTTTTGTTAGTTAAATTTATG 57.249 30.769 1.90 0.00 0.00 1.90
1972 2132 9.844790 GTAGCCGGTTTTGTTAGTTAAATTTAT 57.155 29.630 1.90 0.00 0.00 1.40
1973 2133 8.844244 TGTAGCCGGTTTTGTTAGTTAAATTTA 58.156 29.630 1.90 0.00 0.00 1.40
1974 2134 7.714703 TGTAGCCGGTTTTGTTAGTTAAATTT 58.285 30.769 1.90 0.00 0.00 1.82
1975 2135 7.274603 TGTAGCCGGTTTTGTTAGTTAAATT 57.725 32.000 1.90 0.00 0.00 1.82
1976 2136 6.569035 GCTGTAGCCGGTTTTGTTAGTTAAAT 60.569 38.462 1.90 0.00 34.31 1.40
1977 2137 5.277925 GCTGTAGCCGGTTTTGTTAGTTAAA 60.278 40.000 1.90 0.00 34.31 1.52
1978 2138 4.213906 GCTGTAGCCGGTTTTGTTAGTTAA 59.786 41.667 1.90 0.00 34.31 2.01
1979 2139 3.747529 GCTGTAGCCGGTTTTGTTAGTTA 59.252 43.478 1.90 0.00 34.31 2.24
1980 2140 2.551032 GCTGTAGCCGGTTTTGTTAGTT 59.449 45.455 1.90 0.00 34.31 2.24
1981 2141 2.148768 GCTGTAGCCGGTTTTGTTAGT 58.851 47.619 1.90 0.00 34.31 2.24
1982 2142 2.147958 TGCTGTAGCCGGTTTTGTTAG 58.852 47.619 1.90 0.00 41.18 2.34
1983 2143 2.147958 CTGCTGTAGCCGGTTTTGTTA 58.852 47.619 1.90 0.00 41.18 2.41
1984 2144 0.951558 CTGCTGTAGCCGGTTTTGTT 59.048 50.000 1.90 0.00 41.18 2.83
1985 2145 0.889186 CCTGCTGTAGCCGGTTTTGT 60.889 55.000 1.90 0.00 40.07 2.83
1986 2146 0.605319 TCCTGCTGTAGCCGGTTTTG 60.605 55.000 13.02 0.00 44.45 2.44
1987 2147 0.321653 CTCCTGCTGTAGCCGGTTTT 60.322 55.000 13.02 0.00 44.45 2.43
1988 2148 1.296715 CTCCTGCTGTAGCCGGTTT 59.703 57.895 13.02 0.00 44.45 3.27
1989 2149 2.982130 CTCCTGCTGTAGCCGGTT 59.018 61.111 13.02 0.00 44.45 4.44
1990 2150 3.775654 GCTCCTGCTGTAGCCGGT 61.776 66.667 13.02 0.00 44.45 5.28
1991 2151 2.803155 TTTGCTCCTGCTGTAGCCGG 62.803 60.000 7.89 7.89 45.33 6.13
1992 2152 0.955428 TTTTGCTCCTGCTGTAGCCG 60.955 55.000 5.72 0.00 41.18 5.52
1993 2153 0.807496 CTTTTGCTCCTGCTGTAGCC 59.193 55.000 5.72 0.00 41.18 3.93
1994 2154 1.198637 CACTTTTGCTCCTGCTGTAGC 59.801 52.381 0.96 0.96 40.48 3.58
1995 2155 2.481952 GTCACTTTTGCTCCTGCTGTAG 59.518 50.000 0.00 0.00 40.48 2.74
1996 2156 2.158827 TGTCACTTTTGCTCCTGCTGTA 60.159 45.455 0.00 0.00 40.48 2.74
1997 2157 1.312815 GTCACTTTTGCTCCTGCTGT 58.687 50.000 0.00 0.00 40.48 4.40
1998 2158 1.002033 GTGTCACTTTTGCTCCTGCTG 60.002 52.381 0.00 0.00 40.48 4.41
1999 2159 1.312815 GTGTCACTTTTGCTCCTGCT 58.687 50.000 0.00 0.00 40.48 4.24
2000 2160 0.312102 GGTGTCACTTTTGCTCCTGC 59.688 55.000 2.35 0.00 40.20 4.85
2001 2161 0.588252 CGGTGTCACTTTTGCTCCTG 59.412 55.000 2.35 0.00 0.00 3.86
2002 2162 0.535102 CCGGTGTCACTTTTGCTCCT 60.535 55.000 2.35 0.00 0.00 3.69
2003 2163 0.818040 ACCGGTGTCACTTTTGCTCC 60.818 55.000 6.12 0.00 0.00 4.70
2004 2164 0.307760 CACCGGTGTCACTTTTGCTC 59.692 55.000 26.95 0.00 0.00 4.26
2005 2165 0.107410 TCACCGGTGTCACTTTTGCT 60.107 50.000 32.74 0.00 0.00 3.91
2006 2166 0.736053 TTCACCGGTGTCACTTTTGC 59.264 50.000 32.74 0.00 0.00 3.68
2007 2167 3.066064 TGAATTCACCGGTGTCACTTTTG 59.934 43.478 32.74 5.46 0.00 2.44
2008 2168 3.283751 TGAATTCACCGGTGTCACTTTT 58.716 40.909 32.74 17.64 0.00 2.27
2009 2169 2.925724 TGAATTCACCGGTGTCACTTT 58.074 42.857 32.74 19.25 0.00 2.66
2010 2170 2.631160 TGAATTCACCGGTGTCACTT 57.369 45.000 32.74 20.74 0.00 3.16
2011 2171 2.859165 ATGAATTCACCGGTGTCACT 57.141 45.000 32.74 16.53 0.00 3.41
2012 2172 4.634004 TGAATATGAATTCACCGGTGTCAC 59.366 41.667 32.74 21.53 45.17 3.67
2013 2173 4.837972 TGAATATGAATTCACCGGTGTCA 58.162 39.130 32.74 27.85 45.17 3.58
2062 2222 3.739167 CGACTGCGGTGGGAAAAA 58.261 55.556 0.80 0.00 0.00 1.94
2072 2232 1.157870 AACCAACAAGACCGACTGCG 61.158 55.000 0.00 0.00 37.24 5.18
2073 2233 1.873698 TAACCAACAAGACCGACTGC 58.126 50.000 0.00 0.00 0.00 4.40
2074 2234 5.432885 AATTTAACCAACAAGACCGACTG 57.567 39.130 0.00 0.00 0.00 3.51
2075 2235 7.308951 CCATAAATTTAACCAACAAGACCGACT 60.309 37.037 1.21 0.00 0.00 4.18
2076 2236 6.804783 CCATAAATTTAACCAACAAGACCGAC 59.195 38.462 1.21 0.00 0.00 4.79
2077 2237 6.490721 ACCATAAATTTAACCAACAAGACCGA 59.509 34.615 1.21 0.00 0.00 4.69
2078 2238 6.683715 ACCATAAATTTAACCAACAAGACCG 58.316 36.000 1.21 0.00 0.00 4.79
2079 2239 9.984190 TTAACCATAAATTTAACCAACAAGACC 57.016 29.630 1.21 0.00 0.00 3.85
2092 2252 9.418045 CCGACATTCAACTTTAACCATAAATTT 57.582 29.630 0.00 0.00 30.88 1.82
2093 2253 8.798402 TCCGACATTCAACTTTAACCATAAATT 58.202 29.630 0.00 0.00 30.88 1.82
2094 2254 8.343168 TCCGACATTCAACTTTAACCATAAAT 57.657 30.769 0.00 0.00 30.88 1.40
2095 2255 7.747155 TCCGACATTCAACTTTAACCATAAA 57.253 32.000 0.00 0.00 0.00 1.40
2096 2256 7.747155 TTCCGACATTCAACTTTAACCATAA 57.253 32.000 0.00 0.00 0.00 1.90
2097 2257 7.574217 GCTTTCCGACATTCAACTTTAACCATA 60.574 37.037 0.00 0.00 0.00 2.74
2098 2258 6.642707 TTTCCGACATTCAACTTTAACCAT 57.357 33.333 0.00 0.00 0.00 3.55
2099 2259 5.506649 GCTTTCCGACATTCAACTTTAACCA 60.507 40.000 0.00 0.00 0.00 3.67
2100 2260 4.915667 GCTTTCCGACATTCAACTTTAACC 59.084 41.667 0.00 0.00 0.00 2.85
2101 2261 4.611366 CGCTTTCCGACATTCAACTTTAAC 59.389 41.667 0.00 0.00 40.02 2.01
2102 2262 4.778904 CGCTTTCCGACATTCAACTTTAA 58.221 39.130 0.00 0.00 40.02 1.52
2103 2263 3.364565 GCGCTTTCCGACATTCAACTTTA 60.365 43.478 0.00 0.00 40.02 1.85
2104 2264 2.604614 GCGCTTTCCGACATTCAACTTT 60.605 45.455 0.00 0.00 40.02 2.66
2105 2265 1.069227 GCGCTTTCCGACATTCAACTT 60.069 47.619 0.00 0.00 40.02 2.66
2106 2266 0.517316 GCGCTTTCCGACATTCAACT 59.483 50.000 0.00 0.00 40.02 3.16
2107 2267 0.789383 CGCGCTTTCCGACATTCAAC 60.789 55.000 5.56 0.00 40.02 3.18
2108 2268 0.946700 TCGCGCTTTCCGACATTCAA 60.947 50.000 5.56 0.00 40.02 2.69
2109 2269 1.351430 CTCGCGCTTTCCGACATTCA 61.351 55.000 5.56 0.00 40.02 2.57
2110 2270 1.345176 CTCGCGCTTTCCGACATTC 59.655 57.895 5.56 0.00 40.02 2.67
2111 2271 2.740714 GCTCGCGCTTTCCGACATT 61.741 57.895 5.56 0.00 40.02 2.71
2112 2272 3.188786 GCTCGCGCTTTCCGACAT 61.189 61.111 5.56 0.00 40.02 3.06
2123 2283 2.977829 TCTAAAATATAGTGCGCTCGCG 59.022 45.455 9.73 6.98 45.51 5.87
2124 2284 4.966850 TTCTAAAATATAGTGCGCTCGC 57.033 40.909 9.73 7.38 42.35 5.03
2125 2285 5.633601 TCCATTCTAAAATATAGTGCGCTCG 59.366 40.000 9.73 0.00 0.00 5.03
2126 2286 6.091441 CCTCCATTCTAAAATATAGTGCGCTC 59.909 42.308 9.73 4.74 0.00 5.03
2127 2287 5.934625 CCTCCATTCTAAAATATAGTGCGCT 59.065 40.000 9.73 4.58 0.00 5.92
2128 2288 5.122396 CCCTCCATTCTAAAATATAGTGCGC 59.878 44.000 0.00 0.00 0.00 6.09
2129 2289 6.464222 TCCCTCCATTCTAAAATATAGTGCG 58.536 40.000 0.00 0.00 0.00 5.34
2130 2290 7.454225 ACTCCCTCCATTCTAAAATATAGTGC 58.546 38.462 0.00 0.00 0.00 4.40
2139 2299 9.847224 GAACAAATATACTCCCTCCATTCTAAA 57.153 33.333 0.00 0.00 0.00 1.85
2140 2300 9.225682 AGAACAAATATACTCCCTCCATTCTAA 57.774 33.333 0.00 0.00 0.00 2.10
2141 2301 8.798975 AGAACAAATATACTCCCTCCATTCTA 57.201 34.615 0.00 0.00 0.00 2.10
2142 2302 7.698163 AGAACAAATATACTCCCTCCATTCT 57.302 36.000 0.00 0.00 0.00 2.40
2143 2303 7.229506 CCAAGAACAAATATACTCCCTCCATTC 59.770 40.741 0.00 0.00 0.00 2.67
2144 2304 7.062957 CCAAGAACAAATATACTCCCTCCATT 58.937 38.462 0.00 0.00 0.00 3.16
2145 2305 6.389869 TCCAAGAACAAATATACTCCCTCCAT 59.610 38.462 0.00 0.00 0.00 3.41
2146 2306 5.729229 TCCAAGAACAAATATACTCCCTCCA 59.271 40.000 0.00 0.00 0.00 3.86
2147 2307 6.099845 TCTCCAAGAACAAATATACTCCCTCC 59.900 42.308 0.00 0.00 0.00 4.30
2148 2308 7.125792 TCTCCAAGAACAAATATACTCCCTC 57.874 40.000 0.00 0.00 0.00 4.30
2149 2309 7.570607 AGATCTCCAAGAACAAATATACTCCCT 59.429 37.037 0.00 0.00 0.00 4.20
2150 2310 7.740805 AGATCTCCAAGAACAAATATACTCCC 58.259 38.462 0.00 0.00 0.00 4.30
2151 2311 9.620259 AAAGATCTCCAAGAACAAATATACTCC 57.380 33.333 0.00 0.00 0.00 3.85
2158 2318 6.348540 GCGTGTAAAGATCTCCAAGAACAAAT 60.349 38.462 0.00 0.00 0.00 2.32
2207 2376 7.281040 AGTTCATGCAAAGAGAAAGAATTCA 57.719 32.000 8.44 0.00 38.06 2.57
2214 2383 5.964758 ACACAAAGTTCATGCAAAGAGAAA 58.035 33.333 0.00 0.00 0.00 2.52
2273 2442 2.012673 CTGGCTGCCACTATTGACTTC 58.987 52.381 19.30 0.00 0.00 3.01
2293 2462 2.305291 GACGTACTGACTGACGAACAC 58.695 52.381 0.89 0.00 41.60 3.32
2392 2561 7.008901 CGTACAAGCAAATCTACGAACAATCTA 59.991 37.037 0.00 0.00 33.36 1.98
2393 2562 6.183360 CGTACAAGCAAATCTACGAACAATCT 60.183 38.462 0.00 0.00 33.36 2.40
2394 2563 5.952064 CGTACAAGCAAATCTACGAACAATC 59.048 40.000 0.00 0.00 33.36 2.67
2395 2564 5.636121 TCGTACAAGCAAATCTACGAACAAT 59.364 36.000 0.00 0.00 37.07 2.71
2396 2565 4.983538 TCGTACAAGCAAATCTACGAACAA 59.016 37.500 0.00 0.00 37.07 2.83
2397 2566 4.548494 TCGTACAAGCAAATCTACGAACA 58.452 39.130 0.00 0.00 37.07 3.18
2398 2567 5.697848 ATCGTACAAGCAAATCTACGAAC 57.302 39.130 3.17 0.00 42.04 3.95
2399 2568 7.997107 ATAATCGTACAAGCAAATCTACGAA 57.003 32.000 3.17 0.00 42.04 3.85
2400 2569 7.997107 AATAATCGTACAAGCAAATCTACGA 57.003 32.000 1.63 1.63 42.74 3.43
2436 2605 5.044772 CCTAGACCATAGGCTCCACTCTATA 60.045 48.000 0.00 0.00 0.00 1.31
2444 2613 4.224762 ACTAAACCTAGACCATAGGCTCC 58.775 47.826 0.00 0.00 38.25 4.70
2471 2640 8.970691 AAACTTGATTAACCATTTCTTGATCG 57.029 30.769 0.00 0.00 0.00 3.69
2476 2645 9.914131 GCTAAGAAACTTGATTAACCATTTCTT 57.086 29.630 13.30 13.30 44.41 2.52
2477 2646 9.301897 AGCTAAGAAACTTGATTAACCATTTCT 57.698 29.630 0.00 0.00 37.86 2.52
2493 2662 6.963049 TTTCGAGGTCATTAGCTAAGAAAC 57.037 37.500 12.54 9.28 36.18 2.78
2525 2694 5.755861 ACTAAGCATTTCTAAGCGATCTTCC 59.244 40.000 0.00 0.00 33.85 3.46
2560 2729 0.670239 GGCCCAAAATCAAAGCCACG 60.670 55.000 0.00 0.00 43.32 4.94
2561 2730 0.670239 CGGCCCAAAATCAAAGCCAC 60.670 55.000 0.00 0.00 44.06 5.01
2587 2756 7.498570 ACAAATGCATACCACACTTGAAAAATT 59.501 29.630 11.05 0.00 0.00 1.82
2589 2758 6.344500 ACAAATGCATACCACACTTGAAAAA 58.656 32.000 11.05 0.00 0.00 1.94
2611 2780 1.672030 CTCGGGTCTGCATGCAACA 60.672 57.895 22.88 8.47 0.00 3.33
3073 3258 0.737715 GATGATACATCGCCGGAGCC 60.738 60.000 5.05 0.00 34.57 4.70
3276 3484 2.571757 GCGTCCATGTCGAGGTCA 59.428 61.111 10.87 0.00 0.00 4.02
3324 3532 1.302832 CTTCAGGTGCGGGCTCTTT 60.303 57.895 0.00 0.00 0.00 2.52
3490 3698 4.175337 GTAGCAGCCGCCCATGGA 62.175 66.667 15.22 0.00 39.83 3.41
3647 3855 2.432628 AAGGAAAGCGGTCGAGCG 60.433 61.111 31.08 31.08 43.00 5.03
3706 3914 4.783734 GACCACCCCGTCGTACGC 62.784 72.222 11.24 4.96 40.91 4.42
3786 3994 2.317609 CGGTCCAGCGTTCCTTGTG 61.318 63.158 0.00 0.00 0.00 3.33
3789 3997 4.699522 GCCGGTCCAGCGTTCCTT 62.700 66.667 1.90 0.00 0.00 3.36
3828 4036 2.586079 CGGCGCTCATCGTCCATT 60.586 61.111 7.64 0.00 40.23 3.16
3882 4096 1.447140 GTGCTCGACGCCCATGTAA 60.447 57.895 4.73 0.00 38.05 2.41
3964 4178 0.398098 TTAGAAGGCCGACCCTAGGG 60.398 60.000 27.36 27.36 45.62 3.53
3981 4195 3.842732 TCGTGCTGAAGTCTCGAATTA 57.157 42.857 0.00 0.00 0.00 1.40
3982 4196 2.724977 TCGTGCTGAAGTCTCGAATT 57.275 45.000 0.00 0.00 0.00 2.17
3983 4197 2.926200 CAATCGTGCTGAAGTCTCGAAT 59.074 45.455 0.00 0.00 34.38 3.34
3984 4198 2.288213 ACAATCGTGCTGAAGTCTCGAA 60.288 45.455 0.00 0.00 34.38 3.71
4000 4261 9.539825 AGATTCATCAGATAACAGTACACAATC 57.460 33.333 0.00 0.00 0.00 2.67
4029 4293 6.814146 GGATGAACACGTAGAAGAAATCTCTT 59.186 38.462 0.00 0.00 44.93 2.85
4040 4304 5.592688 TCATGTAGATGGATGAACACGTAGA 59.407 40.000 0.00 0.00 0.00 2.59
4042 4306 5.736207 GCTCATGTAGATGGATGAACACGTA 60.736 44.000 0.00 0.00 0.00 3.57
4044 4308 3.492383 GCTCATGTAGATGGATGAACACG 59.508 47.826 0.00 0.00 0.00 4.49
4061 4325 1.625315 TCTGTACTTGCACAGGCTCAT 59.375 47.619 3.61 0.00 44.98 2.90
4086 4351 9.516546 ACTAGTTAAATAAGGCTTTGCTACTTT 57.483 29.630 4.45 0.00 0.00 2.66
4134 4399 3.378742 TGGTTGAATCGAGAGCTCTACTC 59.621 47.826 18.25 11.11 46.66 2.59
4136 4401 3.784701 TGGTTGAATCGAGAGCTCTAC 57.215 47.619 18.25 9.18 0.00 2.59
4137 4402 4.220821 AGTTTGGTTGAATCGAGAGCTCTA 59.779 41.667 18.25 1.54 0.00 2.43
4138 4403 3.007398 AGTTTGGTTGAATCGAGAGCTCT 59.993 43.478 18.28 18.28 0.00 4.09
4139 4404 3.330267 AGTTTGGTTGAATCGAGAGCTC 58.670 45.455 5.27 5.27 0.00 4.09
4140 4405 3.409026 AGTTTGGTTGAATCGAGAGCT 57.591 42.857 0.00 0.00 0.00 4.09
4141 4406 4.222114 CAAAGTTTGGTTGAATCGAGAGC 58.778 43.478 7.78 0.00 0.00 4.09
4215 4522 1.000274 GCAACCTGTGACAATTGGGAC 60.000 52.381 10.83 6.29 0.00 4.46
4222 4529 1.102154 CACCTTGCAACCTGTGACAA 58.898 50.000 11.67 0.00 0.00 3.18
4225 4532 0.751277 CCACACCTTGCAACCTGTGA 60.751 55.000 24.19 0.00 36.87 3.58
4295 4604 5.661503 TCTCATCTGATCTACTCCCTTCT 57.338 43.478 0.00 0.00 0.00 2.85
4296 4605 5.123820 CGATCTCATCTGATCTACTCCCTTC 59.876 48.000 0.00 0.00 40.32 3.46
4297 4606 5.009631 CGATCTCATCTGATCTACTCCCTT 58.990 45.833 0.00 0.00 40.32 3.95
4303 4612 6.389091 AGAATTGCGATCTCATCTGATCTAC 58.611 40.000 0.00 0.00 40.32 2.59
4324 4633 4.447724 GCGACTTGTTCTGTATGTTGAGAA 59.552 41.667 0.00 0.00 0.00 2.87
4346 4655 2.182537 CCGCTGCATTTGGGAAGC 59.817 61.111 0.00 0.00 0.00 3.86
4385 4694 2.318207 AGGTACTCCTTCCCTGTGGTAT 59.682 50.000 0.00 0.00 42.12 2.73
4469 4838 2.162408 CGAGGAAACCTTTTGGATGAGC 59.838 50.000 0.00 0.00 44.07 4.26
4482 4851 4.674281 AGAAGGGTATGATCGAGGAAAC 57.326 45.455 0.00 0.00 0.00 2.78
4491 4860 3.266772 TGCCACTTGAAGAAGGGTATGAT 59.733 43.478 0.00 0.00 29.53 2.45
4492 4861 2.642311 TGCCACTTGAAGAAGGGTATGA 59.358 45.455 0.00 0.00 29.53 2.15
4493 4862 3.071874 TGCCACTTGAAGAAGGGTATG 57.928 47.619 0.00 0.00 29.53 2.39
4494 4863 3.372025 GGATGCCACTTGAAGAAGGGTAT 60.372 47.826 0.00 2.51 31.84 2.73
4495 4864 2.026262 GGATGCCACTTGAAGAAGGGTA 60.026 50.000 0.00 0.00 29.53 3.69
4496 4865 1.272147 GGATGCCACTTGAAGAAGGGT 60.272 52.381 0.00 0.00 29.53 4.34
4497 4866 1.467920 GGATGCCACTTGAAGAAGGG 58.532 55.000 0.00 0.00 32.95 3.95
4538 4910 5.828328 CCCAATTACCTTTATCTTGACCCTC 59.172 44.000 0.00 0.00 0.00 4.30
4560 4932 3.914426 ACCGAATATATCCTGATGCCC 57.086 47.619 0.00 0.00 0.00 5.36
4587 4959 8.843262 CCATCTGATATTTTGATGCTCAACTAA 58.157 33.333 0.00 0.00 35.89 2.24
4588 4960 7.446319 CCCATCTGATATTTTGATGCTCAACTA 59.554 37.037 0.00 0.00 35.89 2.24
4589 4961 6.264744 CCCATCTGATATTTTGATGCTCAACT 59.735 38.462 0.00 0.00 35.89 3.16
4593 4965 4.765856 AGCCCATCTGATATTTTGATGCTC 59.234 41.667 0.00 0.00 37.01 4.26
4625 4997 1.532007 CTATCGTCGGACTAGCCACTC 59.468 57.143 6.57 0.00 35.94 3.51
4737 5112 7.581213 ATCTTGAACACAAGTGGTTGATTTA 57.419 32.000 5.08 0.00 40.99 1.40
4757 5132 7.136822 TGTTGCCTAGTGGATTGTATATCTT 57.863 36.000 0.00 0.00 34.57 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.