Multiple sequence alignment - TraesCS3B01G496100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G496100 chr3B 100.000 5745 0 0 1 5745 739927011 739921267 0.000000e+00 10610.0
1 TraesCS3B01G496100 chr3B 92.851 2406 162 7 1328 3729 578993262 578990863 0.000000e+00 3482.0
2 TraesCS3B01G496100 chr3B 87.809 1337 98 28 11 1324 739952320 739951026 0.000000e+00 1506.0
3 TraesCS3B01G496100 chr3B 89.317 908 55 16 3726 4591 739951034 739950127 0.000000e+00 1101.0
4 TraesCS3B01G496100 chr3B 86.283 955 82 21 4813 5745 769705851 769706778 0.000000e+00 992.0
5 TraesCS3B01G496100 chr3B 89.105 514 41 5 3897 4410 739948456 739947958 4.890000e-175 625.0
6 TraesCS3B01G496100 chr3B 93.140 379 24 1 865 1241 739957745 739957367 6.500000e-154 555.0
7 TraesCS3B01G496100 chr3B 91.919 396 27 2 867 1260 739989298 739989690 3.030000e-152 549.0
8 TraesCS3B01G496100 chr3B 92.248 387 28 1 867 1251 739932967 739932581 1.090000e-151 547.0
9 TraesCS3B01G496100 chr3B 87.248 298 38 0 4001 4298 739989971 739990268 1.980000e-89 340.0
10 TraesCS3B01G496100 chr3B 86.833 281 37 0 4003 4283 739957250 739956970 1.200000e-81 315.0
11 TraesCS3B01G496100 chr3B 85.577 104 12 2 131 234 739926358 739926258 7.870000e-19 106.0
12 TraesCS3B01G496100 chr3B 85.577 104 12 2 654 754 739926881 739926778 7.870000e-19 106.0
13 TraesCS3B01G496100 chr3B 79.114 158 27 5 4813 4964 800978181 800978338 2.830000e-18 104.0
14 TraesCS3B01G496100 chr6B 93.745 2398 142 5 1334 3729 168072599 168074990 0.000000e+00 3591.0
15 TraesCS3B01G496100 chr6B 93.439 2408 150 6 1325 3729 19975174 19977576 0.000000e+00 3565.0
16 TraesCS3B01G496100 chr6B 88.947 950 72 11 4811 5743 25805883 25804950 0.000000e+00 1142.0
17 TraesCS3B01G496100 chr1B 92.816 2408 156 11 1328 3729 142286554 142284158 0.000000e+00 3472.0
18 TraesCS3B01G496100 chr1B 91.392 790 53 5 4960 5743 21488863 21489643 0.000000e+00 1068.0
19 TraesCS3B01G496100 chr2B 92.397 2407 174 6 1325 3729 363753569 363751170 0.000000e+00 3422.0
20 TraesCS3B01G496100 chr2B 86.413 920 95 20 4837 5743 104304857 104305759 0.000000e+00 979.0
21 TraesCS3B01G496100 chr2A 92.263 2417 168 14 1320 3729 763297213 763294809 0.000000e+00 3410.0
22 TraesCS3B01G496100 chr2A 84.911 338 29 10 4845 5160 2734813 2734476 7.180000e-84 322.0
23 TraesCS3B01G496100 chr4B 92.295 2401 177 4 1334 3729 576181845 576179448 0.000000e+00 3402.0
24 TraesCS3B01G496100 chr4B 92.256 2402 178 6 1330 3729 517364206 517361811 0.000000e+00 3398.0
25 TraesCS3B01G496100 chr4B 83.810 525 80 4 5199 5719 670339350 670339873 1.440000e-135 494.0
26 TraesCS3B01G496100 chrUn 92.253 2401 177 7 1334 3729 3842339 3839943 0.000000e+00 3395.0
27 TraesCS3B01G496100 chr3D 91.575 1092 50 19 256 1324 557653201 557652129 0.000000e+00 1469.0
28 TraesCS3B01G496100 chr3D 87.895 760 70 12 3726 4477 557652137 557651392 0.000000e+00 874.0
29 TraesCS3B01G496100 chr3D 93.622 392 23 1 865 1254 557699876 557699485 8.300000e-163 584.0
30 TraesCS3B01G496100 chr3D 87.919 298 36 0 4001 4298 557711771 557712068 9.160000e-93 351.0
31 TraesCS3B01G496100 chr3D 86.319 307 41 1 4003 4309 557699177 557698872 3.320000e-87 333.0
32 TraesCS3B01G496100 chr3D 93.496 123 8 0 7 129 557653336 557653214 3.540000e-42 183.0
33 TraesCS3B01G496100 chr7A 89.990 959 63 8 4810 5743 5687602 5688552 0.000000e+00 1208.0
34 TraesCS3B01G496100 chr1D 89.845 965 56 10 4813 5743 455998034 455998990 0.000000e+00 1201.0
35 TraesCS3B01G496100 chr1A 89.223 965 70 8 4813 5743 80564572 80565536 0.000000e+00 1175.0
36 TraesCS3B01G496100 chr3A 92.157 714 40 6 615 1322 693444415 693443712 0.000000e+00 994.0
37 TraesCS3B01G496100 chr3A 90.749 681 58 4 3726 4402 693443718 693443039 0.000000e+00 904.0
38 TraesCS3B01G496100 chr3A 92.506 387 27 1 867 1251 693450426 693450040 2.340000e-153 553.0
39 TraesCS3B01G496100 chr3A 91.228 399 30 2 867 1260 693466439 693466837 6.550000e-149 538.0
40 TraesCS3B01G496100 chr3A 87.021 339 27 7 11 349 693444924 693444603 3.270000e-97 366.0
41 TraesCS3B01G496100 chr3A 81.757 296 45 6 4003 4294 693449729 693449439 7.440000e-59 239.0
42 TraesCS3B01G496100 chr3A 85.833 120 12 3 654 770 693444804 693444687 7.820000e-24 122.0
43 TraesCS3B01G496100 chr3A 88.732 71 6 2 498 566 693444472 693444402 1.030000e-12 86.1
44 TraesCS3B01G496100 chr4A 88.064 754 55 10 4813 5539 704580991 704580246 0.000000e+00 861.0
45 TraesCS3B01G496100 chr4A 87.931 754 56 10 4813 5539 704600856 704600111 0.000000e+00 856.0
46 TraesCS3B01G496100 chr5D 92.228 579 42 2 5168 5743 514409717 514410295 0.000000e+00 817.0
47 TraesCS3B01G496100 chr5D 90.850 306 22 4 4837 5136 514409416 514409721 6.930000e-109 405.0
48 TraesCS3B01G496100 chr5D 87.675 357 21 6 4812 5145 385436950 385436594 1.500000e-105 394.0
49 TraesCS3B01G496100 chr7D 91.667 588 37 3 5168 5743 57796354 57796941 0.000000e+00 804.0
50 TraesCS3B01G496100 chr6A 89.594 567 35 9 4837 5395 107220355 107220905 0.000000e+00 699.0
51 TraesCS3B01G496100 chr5B 89.732 224 20 3 4589 4812 416424020 416423800 3.390000e-72 283.0
52 TraesCS3B01G496100 chr5B 86.364 220 25 4 4590 4809 583016945 583017159 9.620000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G496100 chr3B 739921267 739927011 5744 True 3607.333333 10610 90.384667 1 5745 3 chr3B.!!$R3 5744
1 TraesCS3B01G496100 chr3B 578990863 578993262 2399 True 3482.000000 3482 92.851000 1328 3729 1 chr3B.!!$R1 2401
2 TraesCS3B01G496100 chr3B 739947958 739952320 4362 True 1077.333333 1506 88.743667 11 4591 3 chr3B.!!$R4 4580
3 TraesCS3B01G496100 chr3B 769705851 769706778 927 False 992.000000 992 86.283000 4813 5745 1 chr3B.!!$F1 932
4 TraesCS3B01G496100 chr3B 739989298 739990268 970 False 444.500000 549 89.583500 867 4298 2 chr3B.!!$F3 3431
5 TraesCS3B01G496100 chr3B 739956970 739957745 775 True 435.000000 555 89.986500 865 4283 2 chr3B.!!$R5 3418
6 TraesCS3B01G496100 chr6B 168072599 168074990 2391 False 3591.000000 3591 93.745000 1334 3729 1 chr6B.!!$F2 2395
7 TraesCS3B01G496100 chr6B 19975174 19977576 2402 False 3565.000000 3565 93.439000 1325 3729 1 chr6B.!!$F1 2404
8 TraesCS3B01G496100 chr6B 25804950 25805883 933 True 1142.000000 1142 88.947000 4811 5743 1 chr6B.!!$R1 932
9 TraesCS3B01G496100 chr1B 142284158 142286554 2396 True 3472.000000 3472 92.816000 1328 3729 1 chr1B.!!$R1 2401
10 TraesCS3B01G496100 chr1B 21488863 21489643 780 False 1068.000000 1068 91.392000 4960 5743 1 chr1B.!!$F1 783
11 TraesCS3B01G496100 chr2B 363751170 363753569 2399 True 3422.000000 3422 92.397000 1325 3729 1 chr2B.!!$R1 2404
12 TraesCS3B01G496100 chr2B 104304857 104305759 902 False 979.000000 979 86.413000 4837 5743 1 chr2B.!!$F1 906
13 TraesCS3B01G496100 chr2A 763294809 763297213 2404 True 3410.000000 3410 92.263000 1320 3729 1 chr2A.!!$R2 2409
14 TraesCS3B01G496100 chr4B 576179448 576181845 2397 True 3402.000000 3402 92.295000 1334 3729 1 chr4B.!!$R2 2395
15 TraesCS3B01G496100 chr4B 517361811 517364206 2395 True 3398.000000 3398 92.256000 1330 3729 1 chr4B.!!$R1 2399
16 TraesCS3B01G496100 chr4B 670339350 670339873 523 False 494.000000 494 83.810000 5199 5719 1 chr4B.!!$F1 520
17 TraesCS3B01G496100 chrUn 3839943 3842339 2396 True 3395.000000 3395 92.253000 1334 3729 1 chrUn.!!$R1 2395
18 TraesCS3B01G496100 chr3D 557651392 557653336 1944 True 842.000000 1469 90.988667 7 4477 3 chr3D.!!$R1 4470
19 TraesCS3B01G496100 chr3D 557698872 557699876 1004 True 458.500000 584 89.970500 865 4309 2 chr3D.!!$R2 3444
20 TraesCS3B01G496100 chr7A 5687602 5688552 950 False 1208.000000 1208 89.990000 4810 5743 1 chr7A.!!$F1 933
21 TraesCS3B01G496100 chr1D 455998034 455998990 956 False 1201.000000 1201 89.845000 4813 5743 1 chr1D.!!$F1 930
22 TraesCS3B01G496100 chr1A 80564572 80565536 964 False 1175.000000 1175 89.223000 4813 5743 1 chr1A.!!$F1 930
23 TraesCS3B01G496100 chr3A 693443039 693444924 1885 True 494.420000 994 88.898400 11 4402 5 chr3A.!!$R1 4391
24 TraesCS3B01G496100 chr3A 693449439 693450426 987 True 396.000000 553 87.131500 867 4294 2 chr3A.!!$R2 3427
25 TraesCS3B01G496100 chr4A 704580246 704580991 745 True 861.000000 861 88.064000 4813 5539 1 chr4A.!!$R1 726
26 TraesCS3B01G496100 chr4A 704600111 704600856 745 True 856.000000 856 87.931000 4813 5539 1 chr4A.!!$R2 726
27 TraesCS3B01G496100 chr5D 514409416 514410295 879 False 611.000000 817 91.539000 4837 5743 2 chr5D.!!$F1 906
28 TraesCS3B01G496100 chr7D 57796354 57796941 587 False 804.000000 804 91.667000 5168 5743 1 chr7D.!!$F1 575
29 TraesCS3B01G496100 chr6A 107220355 107220905 550 False 699.000000 699 89.594000 4837 5395 1 chr6A.!!$F1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.530744 TCAGAGCCGCGACTAATGTT 59.469 50.0 8.23 0.0 0.00 2.71 F
570 630 0.673985 GAAGAAGGCAACAACCCACC 59.326 55.0 0.00 0.0 41.41 4.61 F
1885 1955 0.178068 TCTTAGCCAGCGGACAATCC 59.822 55.0 0.00 0.0 0.00 3.01 F
3160 3233 0.037590 TGCGGAACCAAGCCACTTAT 59.962 50.0 0.00 0.0 0.00 1.73 F
4479 4620 0.651031 GGAAGACCGAAGCATTACGC 59.349 55.0 0.00 0.0 42.91 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1225 1290 1.142965 CGATGGTGACGCCCATGTA 59.857 57.895 1.74 0.0 45.31 2.29 R
2330 2401 1.335132 GGAGGATACGTGGCTTGGGA 61.335 60.000 0.00 0.0 46.39 4.37 R
3230 3306 0.842635 GGCAAGGAGATCCCATGTCT 59.157 55.000 0.00 0.0 37.41 3.41 R
4606 4808 0.106708 TGCCAGTCTGTCACACCTTC 59.893 55.000 0.00 0.0 0.00 3.46 R
5395 6743 0.250467 GCTCTGAAGGTGAAGCCACA 60.250 55.000 0.00 0.0 44.93 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.009829 GCCAACACCGATCATGACTC 58.990 55.000 0.00 0.00 0.00 3.36
105 106 3.526428 TTGGGTTGGGGCATGGGT 61.526 61.111 0.00 0.00 0.00 4.51
169 170 8.137745 AGGGATATGAACAACAAATTTGTGAT 57.862 30.769 23.93 12.54 41.31 3.06
194 195 2.941720 GACATGAGTTGGAATCAGAGCC 59.058 50.000 0.00 0.00 0.00 4.70
206 207 0.530744 TCAGAGCCGCGACTAATGTT 59.469 50.000 8.23 0.00 0.00 2.71
220 222 2.867109 AATGTTGACTCCTCACCTGG 57.133 50.000 0.00 0.00 0.00 4.45
234 236 5.595133 TCCTCACCTGGAAAAACGTTAATTT 59.405 36.000 0.00 0.00 32.39 1.82
236 238 7.449086 TCCTCACCTGGAAAAACGTTAATTTAT 59.551 33.333 0.00 0.00 32.39 1.40
239 241 5.859648 ACCTGGAAAAACGTTAATTTATGCG 59.140 36.000 0.00 0.00 0.00 4.73
264 266 7.803189 CGGGTTTGTTATGATTAGCATGTTATC 59.197 37.037 0.00 0.00 37.87 1.75
283 285 1.684049 AGTGGCTCGAGGAGGAAGG 60.684 63.158 15.58 0.00 0.00 3.46
313 315 3.389329 AGTGCCTTTGGATGTCGATCTAT 59.611 43.478 0.00 0.00 0.00 1.98
344 346 8.786898 CAGGAAAGAAAGTGACTGATTGAAATA 58.213 33.333 0.00 0.00 0.00 1.40
374 397 3.089284 GGCACCTAACAAATAGCCACTT 58.911 45.455 0.00 0.00 41.63 3.16
412 443 7.224167 TCCTTTGTTTCGAAAGAGACTCTTAAC 59.776 37.037 18.00 17.18 44.77 2.01
568 628 3.330701 AGATAGAAGAAGGCAACAACCCA 59.669 43.478 0.00 0.00 41.41 4.51
570 630 0.673985 GAAGAAGGCAACAACCCACC 59.326 55.000 0.00 0.00 41.41 4.61
579 639 2.166254 GCAACAACCCACCTATCAATGG 59.834 50.000 0.00 0.00 35.59 3.16
588 648 5.372363 ACCCACCTATCAATGGAATGATACA 59.628 40.000 0.00 0.00 40.44 2.29
590 650 5.707298 CCACCTATCAATGGAATGATACACC 59.293 44.000 0.00 0.00 40.44 4.16
605 665 2.344093 ACACCCCCTGAGTGTATTCT 57.656 50.000 0.00 0.00 46.37 2.40
618 678 7.385205 CCTGAGTGTATTCTCGAAAAAGAAGAA 59.615 37.037 0.00 0.00 38.60 2.52
647 709 9.454585 CAACAACATTATCATCAATGTGTATCC 57.545 33.333 2.48 0.00 46.00 2.59
806 869 6.993079 CCATGATTGGCTACTACATAGTGTA 58.007 40.000 0.00 0.00 35.02 2.90
807 870 6.868864 CCATGATTGGCTACTACATAGTGTAC 59.131 42.308 0.00 0.00 35.02 2.90
808 871 7.255977 CCATGATTGGCTACTACATAGTGTACT 60.256 40.741 0.00 0.00 35.02 2.73
809 872 7.039313 TGATTGGCTACTACATAGTGTACTG 57.961 40.000 1.66 0.00 37.10 2.74
810 873 5.847111 TTGGCTACTACATAGTGTACTGG 57.153 43.478 1.66 0.00 37.10 4.00
811 874 4.863548 TGGCTACTACATAGTGTACTGGT 58.136 43.478 1.66 0.00 37.10 4.00
812 875 4.643334 TGGCTACTACATAGTGTACTGGTG 59.357 45.833 1.66 0.00 37.10 4.17
1311 1377 1.736696 GCTCACATGGCCATTTTTCCG 60.737 52.381 17.92 6.18 0.00 4.30
1315 1381 0.179103 CATGGCCATTTTTCCGGAGC 60.179 55.000 17.92 2.91 0.00 4.70
1316 1382 0.324645 ATGGCCATTTTTCCGGAGCT 60.325 50.000 14.09 0.00 0.00 4.09
1317 1383 0.965363 TGGCCATTTTTCCGGAGCTC 60.965 55.000 0.00 4.71 0.00 4.09
1318 1384 0.965363 GGCCATTTTTCCGGAGCTCA 60.965 55.000 17.19 0.00 0.00 4.26
1322 1388 2.357009 CCATTTTTCCGGAGCTCAGATG 59.643 50.000 17.19 10.38 0.00 2.90
1379 1445 4.462133 CCATCCTCTGCATCAGAAAGATT 58.538 43.478 0.00 0.00 40.18 2.40
1502 1572 3.626930 ACCGGCTGGCAAATAAAATAGA 58.373 40.909 12.89 0.00 39.70 1.98
1543 1613 2.727123 TACATGACCGCCATCCAAAT 57.273 45.000 0.00 0.00 31.94 2.32
1549 1619 3.088259 CCGCCATCCAAATCGGTTA 57.912 52.632 0.00 0.00 37.33 2.85
1579 1649 2.087646 CGAGCTATCATCTCCCATCGA 58.912 52.381 0.00 0.00 0.00 3.59
1628 1698 1.002990 TCCGTCGGAGTGAGTAGCA 60.003 57.895 10.71 0.00 0.00 3.49
1796 1866 0.251341 GTCAACCCCATCAAGCCACT 60.251 55.000 0.00 0.00 0.00 4.00
1821 1891 5.825532 TCCAAATAACATGTTGATGGAGGA 58.174 37.500 25.59 19.27 33.39 3.71
1885 1955 0.178068 TCTTAGCCAGCGGACAATCC 59.822 55.000 0.00 0.00 0.00 3.01
1968 2038 4.630940 CCAATTGCGTTTTGCCAGATTATT 59.369 37.500 0.00 0.00 45.60 1.40
1978 2048 7.148918 CGTTTTGCCAGATTATTCTTTGTCAAG 60.149 37.037 0.00 0.00 0.00 3.02
2020 2090 3.872771 ACCACGTAAACACTTTGATTCGT 59.127 39.130 0.00 0.00 0.00 3.85
2024 2094 7.073265 CCACGTAAACACTTTGATTCGTAAAT 58.927 34.615 0.00 0.00 0.00 1.40
2053 2123 6.538742 CCTTTACTTTCCAGATATGCTTCGAA 59.461 38.462 0.00 0.00 0.00 3.71
2058 2128 3.300388 TCCAGATATGCTTCGAAGAGGT 58.700 45.455 28.95 14.79 38.43 3.85
2217 2288 3.200825 CCTCCCAATGATCACCAACTAGT 59.799 47.826 0.00 0.00 0.00 2.57
2330 2401 1.289380 GAAGTGCGAGGGACGTCTT 59.711 57.895 16.46 4.01 44.60 3.01
2376 2447 2.037772 CCTCGTATTAGCTCCATTGCCT 59.962 50.000 0.00 0.00 0.00 4.75
2392 2463 1.066430 TGCCTACTAAGAACCTTGCCG 60.066 52.381 0.00 0.00 0.00 5.69
2414 2485 5.391523 CCGTGTTGAAAAAGAGTGTCTTGAA 60.392 40.000 0.00 0.00 36.71 2.69
2430 2501 6.015940 GTGTCTTGAATCTCATCAACCCTTTT 60.016 38.462 0.00 0.00 35.55 2.27
2456 2527 2.254350 CGAGTCAGTCGGTCGCAA 59.746 61.111 0.00 0.00 45.58 4.85
2521 2592 1.289160 AATCTGAGCCCAAGTAGCCA 58.711 50.000 0.00 0.00 0.00 4.75
2533 2604 0.251209 AGTAGCCACAGACTCGGACA 60.251 55.000 0.00 0.00 0.00 4.02
2667 2740 7.011109 GCCTATACTTTCGTTTAAGCTCATCAA 59.989 37.037 0.00 0.00 0.00 2.57
2671 2744 9.817809 ATACTTTCGTTTAAGCTCATCAATCTA 57.182 29.630 0.00 0.00 0.00 1.98
2673 2746 7.819900 ACTTTCGTTTAAGCTCATCAATCTACT 59.180 33.333 0.00 0.00 0.00 2.57
2707 2780 8.714179 TCGAGATCGATAAAAGTCTAATCTCTC 58.286 37.037 0.00 0.00 44.22 3.20
2762 2835 6.216801 AGAAGAAACATACGCATACTGGTA 57.783 37.500 0.00 0.00 0.00 3.25
2846 2919 7.866393 CAGCTCAGTTTCTTTTCAAAATGATCT 59.134 33.333 0.00 0.00 39.07 2.75
2849 2922 9.740239 CTCAGTTTCTTTTCAAAATGATCTTCA 57.260 29.630 0.00 0.00 39.07 3.02
2880 2953 4.777896 TCCACTCCTTGTTAGTCAGCTTAT 59.222 41.667 0.00 0.00 0.00 1.73
3017 3090 7.606456 TCGCTCTTATGGAAGTTAATTTTGAGT 59.394 33.333 0.00 0.00 34.03 3.41
3084 3157 1.298157 TTTCGCCAAGTCATGCTCCG 61.298 55.000 0.00 0.00 0.00 4.63
3160 3233 0.037590 TGCGGAACCAAGCCACTTAT 59.962 50.000 0.00 0.00 0.00 1.73
3230 3306 6.479972 ACCACTATGTTGAATAGAATCGGA 57.520 37.500 0.00 0.00 0.00 4.55
3321 3397 1.777878 TCCCTACACTCCCTTTTTGCA 59.222 47.619 0.00 0.00 0.00 4.08
3390 3466 3.186119 CGCAAAGCTTGTTGAAGGAAAA 58.814 40.909 0.00 0.00 0.00 2.29
3392 3468 4.183865 GCAAAGCTTGTTGAAGGAAAAGT 58.816 39.130 0.00 0.00 0.00 2.66
3424 3501 9.620660 AACTTTATCGTATGCTTTTTCGAAATT 57.379 25.926 12.12 0.00 35.99 1.82
3625 3702 5.316167 ACTGACATTAAGCAGACAAATGGA 58.684 37.500 9.07 0.00 35.40 3.41
3670 3747 4.841246 AGCCTCTGTCTTCTTCTTAGGAAA 59.159 41.667 0.00 0.00 0.00 3.13
3713 3790 1.763634 GCTTGAACAACTGAAGCTGC 58.236 50.000 0.00 0.00 39.24 5.25
3775 3863 2.486592 TCGCGACTGTTGATAGTTCTCA 59.513 45.455 3.71 0.00 0.00 3.27
3792 3880 2.028112 TCTCAAGAAGAACCACATCCGG 60.028 50.000 0.00 0.00 0.00 5.14
3823 3911 2.941720 GGACAGCAAGATCATGGTTCTC 59.058 50.000 0.00 0.00 0.00 2.87
4014 4125 1.913262 ATGGACGCAGGACCTGACA 60.913 57.895 26.25 16.74 32.44 3.58
4027 4138 1.699634 ACCTGACACTGGCTATGTTGT 59.300 47.619 0.00 0.00 0.00 3.32
4088 4199 2.430610 GGGACGAGGCTCTGCTCAT 61.431 63.158 13.50 0.00 0.00 2.90
4125 4236 1.682854 TCGGTGAAGAAGGTGTACGTT 59.317 47.619 0.00 0.00 0.00 3.99
4133 4244 1.525619 GAAGGTGTACGTTGTGCTCAC 59.474 52.381 0.00 0.00 0.00 3.51
4165 4276 1.000993 ACCTCCGAGGAGATGCAGT 59.999 57.895 21.89 6.46 44.53 4.40
4188 4302 3.432051 GATGGTCGACCTGAGCCCG 62.432 68.421 33.39 0.00 44.62 6.13
4283 4397 1.078918 TGCTCAGGATCGCCAACAG 60.079 57.895 0.00 0.00 36.29 3.16
4313 4427 1.888512 AGAATGGTTGTGCACATCCAC 59.111 47.619 39.13 29.93 45.40 4.02
4314 4428 1.612950 GAATGGTTGTGCACATCCACA 59.387 47.619 39.13 26.27 45.40 4.17
4340 4454 0.675633 ACAAGCATGCCAGACCAAAC 59.324 50.000 15.66 0.00 0.00 2.93
4343 4457 0.957395 AGCATGCCAGACCAAACTCG 60.957 55.000 15.66 0.00 0.00 4.18
4394 4512 3.657398 TCTAGTACACCCTTCGATCCA 57.343 47.619 0.00 0.00 0.00 3.41
4462 4603 5.337578 TGTATCGACTGATGACAAATGGA 57.662 39.130 0.00 0.00 35.99 3.41
4477 4618 4.156008 ACAAATGGAAGACCGAAGCATTAC 59.844 41.667 0.00 0.00 39.42 1.89
4479 4620 0.651031 GGAAGACCGAAGCATTACGC 59.349 55.000 0.00 0.00 42.91 4.42
4497 4653 4.657075 ACGCTAGTTCACCGTTAAATTG 57.343 40.909 0.00 0.00 0.00 2.32
4534 4690 2.151202 TCGATTGCTGTTTGAAGACCC 58.849 47.619 0.00 0.00 0.00 4.46
4561 4717 1.093496 CCGTTGCTATTTCCCCCGAC 61.093 60.000 0.00 0.00 0.00 4.79
4612 4814 9.699410 ATCTAGAGGATATAATCTGAGAAGGTG 57.301 37.037 0.00 0.00 32.04 4.00
4614 4816 7.537596 AGAGGATATAATCTGAGAAGGTGTG 57.462 40.000 0.00 0.00 0.00 3.82
4616 4818 7.232534 AGAGGATATAATCTGAGAAGGTGTGAC 59.767 40.741 0.00 0.00 0.00 3.67
4618 4820 7.015098 AGGATATAATCTGAGAAGGTGTGACAG 59.985 40.741 0.00 0.00 0.00 3.51
4619 4821 7.014711 GGATATAATCTGAGAAGGTGTGACAGA 59.985 40.741 0.00 0.00 40.88 3.41
4628 4830 2.906047 GTGTGACAGACTGGCAGAC 58.094 57.895 21.62 21.62 42.60 3.51
4629 4831 2.515288 TGTGACAGACTGGCAGACA 58.485 52.632 23.66 11.05 35.04 3.41
4630 4832 0.829990 TGTGACAGACTGGCAGACAA 59.170 50.000 23.66 0.00 35.04 3.18
4631 4833 1.202568 TGTGACAGACTGGCAGACAAG 60.203 52.381 23.66 14.07 35.04 3.16
4632 4834 0.250038 TGACAGACTGGCAGACAAGC 60.250 55.000 23.66 8.60 28.05 4.01
4633 4835 0.250038 GACAGACTGGCAGACAAGCA 60.250 55.000 23.66 0.00 35.83 3.91
4635 4837 1.301244 AGACTGGCAGACAAGCACG 60.301 57.895 23.66 0.00 35.83 5.34
4636 4838 1.300931 GACTGGCAGACAAGCACGA 60.301 57.895 23.66 0.00 35.83 4.35
4638 4840 0.952497 ACTGGCAGACAAGCACGATG 60.952 55.000 23.66 0.00 35.83 3.84
4639 4841 2.249557 CTGGCAGACAAGCACGATGC 62.250 60.000 9.42 0.00 45.46 3.91
4652 4854 3.945179 GCACGATGCTAAAATTGAGGAG 58.055 45.455 0.00 0.00 40.96 3.69
4653 4855 3.790123 GCACGATGCTAAAATTGAGGAGC 60.790 47.826 0.00 0.00 40.96 4.70
4654 4856 3.624861 CACGATGCTAAAATTGAGGAGCT 59.375 43.478 0.00 0.00 35.89 4.09
4655 4857 3.624861 ACGATGCTAAAATTGAGGAGCTG 59.375 43.478 0.00 0.00 35.89 4.24
4657 4859 2.094675 TGCTAAAATTGAGGAGCTGGC 58.905 47.619 0.00 0.00 35.89 4.85
4658 4860 2.291153 TGCTAAAATTGAGGAGCTGGCT 60.291 45.455 0.00 0.00 35.89 4.75
4660 4862 3.947834 GCTAAAATTGAGGAGCTGGCTAA 59.052 43.478 0.00 0.00 32.04 3.09
4661 4863 4.036144 GCTAAAATTGAGGAGCTGGCTAAG 59.964 45.833 0.00 0.00 32.04 2.18
4662 4864 4.307032 AAAATTGAGGAGCTGGCTAAGA 57.693 40.909 0.00 0.00 0.00 2.10
4664 4866 4.307032 AATTGAGGAGCTGGCTAAGAAA 57.693 40.909 0.00 0.00 0.00 2.52
4666 4868 3.340814 TGAGGAGCTGGCTAAGAAAAG 57.659 47.619 0.00 0.00 0.00 2.27
4667 4869 2.906389 TGAGGAGCTGGCTAAGAAAAGA 59.094 45.455 0.00 0.00 0.00 2.52
4669 4871 2.909662 AGGAGCTGGCTAAGAAAAGAGT 59.090 45.455 0.00 0.00 0.00 3.24
4670 4872 3.329225 AGGAGCTGGCTAAGAAAAGAGTT 59.671 43.478 0.00 0.00 0.00 3.01
4671 4873 3.438434 GGAGCTGGCTAAGAAAAGAGTTG 59.562 47.826 0.00 0.00 0.00 3.16
4673 4875 2.816672 GCTGGCTAAGAAAAGAGTTGCT 59.183 45.455 0.00 0.00 0.00 3.91
4674 4876 3.365767 GCTGGCTAAGAAAAGAGTTGCTG 60.366 47.826 0.00 0.00 0.00 4.41
4675 4877 2.554032 TGGCTAAGAAAAGAGTTGCTGC 59.446 45.455 0.00 0.00 0.00 5.25
4676 4878 2.816672 GGCTAAGAAAAGAGTTGCTGCT 59.183 45.455 0.00 0.00 0.00 4.24
4677 4879 4.003648 GGCTAAGAAAAGAGTTGCTGCTA 58.996 43.478 0.00 0.00 0.00 3.49
4679 4881 5.048713 GGCTAAGAAAAGAGTTGCTGCTAAA 60.049 40.000 0.00 0.00 0.00 1.85
4680 4882 6.082984 GCTAAGAAAAGAGTTGCTGCTAAAG 58.917 40.000 0.00 0.00 0.00 1.85
4681 4883 6.073003 GCTAAGAAAAGAGTTGCTGCTAAAGA 60.073 38.462 0.00 0.00 0.00 2.52
4682 4884 6.890979 AAGAAAAGAGTTGCTGCTAAAGAT 57.109 33.333 0.00 0.00 0.00 2.40
4683 4885 7.986085 AAGAAAAGAGTTGCTGCTAAAGATA 57.014 32.000 0.00 0.00 0.00 1.98
4684 4886 7.986085 AGAAAAGAGTTGCTGCTAAAGATAA 57.014 32.000 0.00 0.00 0.00 1.75
4686 4888 9.018582 AGAAAAGAGTTGCTGCTAAAGATAATT 57.981 29.630 0.00 0.00 0.00 1.40
4691 4893 7.995488 AGAGTTGCTGCTAAAGATAATTATGGT 59.005 33.333 1.78 0.00 0.00 3.55
4692 4894 9.273016 GAGTTGCTGCTAAAGATAATTATGGTA 57.727 33.333 1.78 0.00 0.00 3.25
4693 4895 9.627123 AGTTGCTGCTAAAGATAATTATGGTAA 57.373 29.630 1.78 0.00 0.00 2.85
4694 4896 9.884465 GTTGCTGCTAAAGATAATTATGGTAAG 57.116 33.333 1.78 0.00 0.00 2.34
4695 4897 8.621532 TGCTGCTAAAGATAATTATGGTAAGG 57.378 34.615 1.78 0.00 0.00 2.69
4696 4898 8.436778 TGCTGCTAAAGATAATTATGGTAAGGA 58.563 33.333 1.78 0.00 0.00 3.36
4708 4910 8.877864 AATTATGGTAAGGAACATGAACTTGA 57.122 30.769 0.00 0.00 0.00 3.02
4710 4912 8.877864 TTATGGTAAGGAACATGAACTTGATT 57.122 30.769 0.00 0.00 0.00 2.57
4711 4913 7.781324 ATGGTAAGGAACATGAACTTGATTT 57.219 32.000 0.00 0.00 0.00 2.17
4713 4915 7.657336 TGGTAAGGAACATGAACTTGATTTTC 58.343 34.615 0.00 0.00 0.00 2.29
4714 4916 7.286546 TGGTAAGGAACATGAACTTGATTTTCA 59.713 33.333 0.00 0.00 37.38 2.69
4719 4921 8.517878 AGGAACATGAACTTGATTTTCATAGTG 58.482 33.333 0.00 0.00 40.92 2.74
4720 4922 7.274250 GGAACATGAACTTGATTTTCATAGTGC 59.726 37.037 0.00 0.00 40.92 4.40
4722 4924 6.435277 ACATGAACTTGATTTTCATAGTGCCT 59.565 34.615 0.00 0.00 40.92 4.75
4723 4925 6.500684 TGAACTTGATTTTCATAGTGCCTC 57.499 37.500 0.00 0.00 0.00 4.70
4724 4926 5.415701 TGAACTTGATTTTCATAGTGCCTCC 59.584 40.000 0.00 0.00 0.00 4.30
4727 4929 5.416952 ACTTGATTTTCATAGTGCCTCCTTG 59.583 40.000 0.00 0.00 0.00 3.61
4730 4932 6.480763 TGATTTTCATAGTGCCTCCTTGTTA 58.519 36.000 0.00 0.00 0.00 2.41
4731 4933 7.118723 TGATTTTCATAGTGCCTCCTTGTTAT 58.881 34.615 0.00 0.00 0.00 1.89
4733 4935 7.391148 TTTTCATAGTGCCTCCTTGTTATTC 57.609 36.000 0.00 0.00 0.00 1.75
4735 4937 6.252599 TCATAGTGCCTCCTTGTTATTCAT 57.747 37.500 0.00 0.00 0.00 2.57
4736 4938 6.662755 TCATAGTGCCTCCTTGTTATTCATT 58.337 36.000 0.00 0.00 0.00 2.57
4738 4940 3.445096 AGTGCCTCCTTGTTATTCATTGC 59.555 43.478 0.00 0.00 0.00 3.56
4743 4945 5.532406 GCCTCCTTGTTATTCATTGCAGATA 59.468 40.000 0.00 0.00 0.00 1.98
4744 4946 6.039717 GCCTCCTTGTTATTCATTGCAGATAA 59.960 38.462 0.00 0.00 0.00 1.75
4745 4947 7.416664 GCCTCCTTGTTATTCATTGCAGATAAA 60.417 37.037 0.00 0.00 0.00 1.40
4746 4948 8.469200 CCTCCTTGTTATTCATTGCAGATAAAA 58.531 33.333 0.00 0.00 0.00 1.52
4747 4949 9.859427 CTCCTTGTTATTCATTGCAGATAAAAA 57.141 29.630 0.00 0.00 0.00 1.94
4761 4963 9.797556 TTGCAGATAAAAATTGAGATTGATCTG 57.202 29.630 9.37 9.37 38.82 2.90
4762 4964 8.410912 TGCAGATAAAAATTGAGATTGATCTGG 58.589 33.333 13.43 1.38 37.74 3.86
4765 4967 9.878737 AGATAAAAATTGAGATTGATCTGGGAT 57.121 29.630 0.00 0.00 37.25 3.85
4766 4968 9.909644 GATAAAAATTGAGATTGATCTGGGATG 57.090 33.333 0.00 0.00 37.25 3.51
4767 4969 7.729124 AAAAATTGAGATTGATCTGGGATGT 57.271 32.000 0.00 0.00 37.25 3.06
4768 4970 7.729124 AAAATTGAGATTGATCTGGGATGTT 57.271 32.000 0.00 0.00 37.25 2.71
4770 4972 5.440207 TTGAGATTGATCTGGGATGTTCA 57.560 39.130 0.00 0.00 37.25 3.18
4771 4973 5.440207 TGAGATTGATCTGGGATGTTCAA 57.560 39.130 0.00 0.00 37.25 2.69
4774 4976 7.576403 TGAGATTGATCTGGGATGTTCAATTA 58.424 34.615 0.00 0.00 36.85 1.40
4775 4977 8.054572 TGAGATTGATCTGGGATGTTCAATTAA 58.945 33.333 0.00 0.00 36.85 1.40
4780 4982 8.640063 TGATCTGGGATGTTCAATTAATATGG 57.360 34.615 0.00 0.00 0.00 2.74
4782 4984 9.082313 GATCTGGGATGTTCAATTAATATGGTT 57.918 33.333 0.00 0.00 0.00 3.67
4784 4986 8.058235 TCTGGGATGTTCAATTAATATGGTTGA 58.942 33.333 0.00 0.00 0.00 3.18
4785 4987 8.780616 TGGGATGTTCAATTAATATGGTTGAT 57.219 30.769 0.00 0.00 32.48 2.57
4786 4988 9.211410 TGGGATGTTCAATTAATATGGTTGATT 57.789 29.630 0.00 0.00 32.48 2.57
4787 4989 9.696917 GGGATGTTCAATTAATATGGTTGATTC 57.303 33.333 0.00 0.00 32.48 2.52
4798 5000 7.537596 AATATGGTTGATTCAAACTTGGACA 57.462 32.000 15.15 0.00 31.53 4.02
4799 5001 7.722949 ATATGGTTGATTCAAACTTGGACAT 57.277 32.000 15.15 2.54 31.53 3.06
4800 5002 5.867903 TGGTTGATTCAAACTTGGACATT 57.132 34.783 15.15 0.00 31.53 2.71
4801 5003 6.968263 TGGTTGATTCAAACTTGGACATTA 57.032 33.333 15.15 0.00 31.53 1.90
4802 5004 7.537596 TGGTTGATTCAAACTTGGACATTAT 57.462 32.000 15.15 0.00 31.53 1.28
4803 5005 8.642935 TGGTTGATTCAAACTTGGACATTATA 57.357 30.769 15.15 0.00 31.53 0.98
4804 5006 8.739039 TGGTTGATTCAAACTTGGACATTATAG 58.261 33.333 15.15 0.00 31.53 1.31
4805 5007 7.702348 GGTTGATTCAAACTTGGACATTATAGC 59.298 37.037 7.20 0.00 0.00 2.97
4806 5008 8.462016 GTTGATTCAAACTTGGACATTATAGCT 58.538 33.333 0.00 0.00 0.00 3.32
4903 5976 3.827898 CAGGACCGAGGAGGCGAC 61.828 72.222 0.00 0.00 46.52 5.19
4986 6069 1.071814 GACCGGCCAACAACTACCA 59.928 57.895 0.00 0.00 0.00 3.25
5135 6237 5.588648 TCTGAACCTGTTGAAACTAAACCAG 59.411 40.000 0.00 0.00 0.00 4.00
5170 6278 3.125316 CTCTCTCTCTCCGTAACTACCG 58.875 54.545 0.00 0.00 0.00 4.02
5194 6302 4.824537 GTCCTAGTCTCTAGTGCATGATCA 59.175 45.833 0.00 0.00 0.00 2.92
5234 6385 2.352388 TGTTATGGAGGTTGTTAGCGC 58.648 47.619 0.00 0.00 0.00 5.92
5279 6430 7.732025 TCCTCTTCTCTGTACATTTGTAACAA 58.268 34.615 0.00 0.00 31.52 2.83
5280 6431 7.656137 TCCTCTTCTCTGTACATTTGTAACAAC 59.344 37.037 0.00 0.00 31.52 3.32
5300 6624 6.582636 ACAACCGACAGATACATGAACATAT 58.417 36.000 0.00 0.00 0.00 1.78
5377 6725 2.838748 ATCCCGACGAGCACAGAGGA 62.839 60.000 0.00 0.00 0.00 3.71
5395 6743 0.037790 GAACTCCTCGAACAGCAGCT 60.038 55.000 0.00 0.00 0.00 4.24
5448 6796 1.066143 CCAGTTATTCCTGGTCGTGCT 60.066 52.381 0.00 0.00 45.81 4.40
5475 6823 1.532007 GCGTTTTCATACGTGGGACAA 59.468 47.619 0.00 0.00 44.16 3.18
5511 6902 2.903855 GATGTCGCCATGGCAGGG 60.904 66.667 34.93 19.82 42.06 4.45
5515 6908 3.645660 TCGCCATGGCAGGGTTGA 61.646 61.111 34.93 20.36 42.06 3.18
5590 6983 3.749064 ACGACAGCGATGGCGAGT 61.749 61.111 38.19 12.02 44.30 4.18
5655 7049 2.131709 CGGGAAGCTCGGGGACATA 61.132 63.158 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.428282 GCCGATTTCGCCCGTTGT 61.428 61.111 0.00 0.00 38.18 3.32
1 2 4.174129 GGCCGATTTCGCCCGTTG 62.174 66.667 0.00 0.00 38.18 4.10
2 3 4.708386 TGGCCGATTTCGCCCGTT 62.708 61.111 0.00 0.00 40.10 4.44
3 4 4.708386 TTGGCCGATTTCGCCCGT 62.708 61.111 0.00 0.00 40.10 5.28
4 5 4.174129 GTTGGCCGATTTCGCCCG 62.174 66.667 0.00 0.00 40.10 6.13
5 6 3.059386 TGTTGGCCGATTTCGCCC 61.059 61.111 0.00 2.51 37.39 6.13
16 17 1.009829 GAGTCATGATCGGTGTTGGC 58.990 55.000 0.00 0.00 0.00 4.52
28 29 6.276847 GTGTGGGAGATAAGTAAGAGTCATG 58.723 44.000 0.00 0.00 0.00 3.07
35 36 4.030913 TGAGGGTGTGGGAGATAAGTAAG 58.969 47.826 0.00 0.00 0.00 2.34
105 106 1.553248 CATAGGAGACCAACCACCGAA 59.447 52.381 0.00 0.00 0.00 4.30
158 159 5.775686 ACTCATGTCCACATCACAAATTTG 58.224 37.500 16.67 16.67 33.61 2.32
165 166 3.057969 TCCAACTCATGTCCACATCAC 57.942 47.619 0.00 0.00 33.61 3.06
169 170 3.327464 TCTGATTCCAACTCATGTCCACA 59.673 43.478 0.00 0.00 0.00 4.17
194 195 2.186076 GAGGAGTCAACATTAGTCGCG 58.814 52.381 0.00 0.00 0.00 5.87
206 207 2.484770 CGTTTTTCCAGGTGAGGAGTCA 60.485 50.000 0.00 0.00 39.25 3.41
220 222 6.693761 AACCCGCATAAATTAACGTTTTTC 57.306 33.333 5.91 0.00 0.00 2.29
234 236 5.126779 TGCTAATCATAACAAACCCGCATA 58.873 37.500 0.00 0.00 0.00 3.14
236 238 3.348119 TGCTAATCATAACAAACCCGCA 58.652 40.909 0.00 0.00 0.00 5.69
239 241 8.629158 TGATAACATGCTAATCATAACAAACCC 58.371 33.333 0.00 0.00 33.19 4.11
254 256 1.482182 TCGAGCCACTGATAACATGCT 59.518 47.619 0.00 0.00 0.00 3.79
264 266 1.515020 CTTCCTCCTCGAGCCACTG 59.485 63.158 6.99 0.00 0.00 3.66
283 285 1.909700 TCCAAAGGCACTGGATTCAC 58.090 50.000 3.63 0.00 40.86 3.18
313 315 4.080582 TCAGTCACTTTCTTTCCTGACCAA 60.081 41.667 0.00 0.00 34.71 3.67
412 443 3.934457 AAGAACAATTTGCCTTACCCG 57.066 42.857 0.00 0.00 0.00 5.28
568 628 5.222130 GGGGTGTATCATTCCATTGATAGGT 60.222 44.000 0.00 0.00 38.83 3.08
570 630 5.014544 AGGGGGTGTATCATTCCATTGATAG 59.985 44.000 0.00 0.00 38.83 2.08
579 639 2.505819 ACACTCAGGGGGTGTATCATTC 59.494 50.000 0.00 0.00 44.72 2.67
588 648 1.006758 TCGAGAATACACTCAGGGGGT 59.993 52.381 0.00 0.00 36.80 4.95
590 650 3.887621 TTTCGAGAATACACTCAGGGG 57.112 47.619 0.00 0.00 36.80 4.79
605 665 4.156922 TGTTGTTGCCTTCTTCTTTTTCGA 59.843 37.500 0.00 0.00 0.00 3.71
618 678 6.071221 ACACATTGATGATAATGTTGTTGCCT 60.071 34.615 1.68 0.00 46.18 4.75
806 869 2.088104 TCTTCTCACCAGTCACCAGT 57.912 50.000 0.00 0.00 0.00 4.00
807 870 3.594134 GAATCTTCTCACCAGTCACCAG 58.406 50.000 0.00 0.00 0.00 4.00
808 871 2.303022 GGAATCTTCTCACCAGTCACCA 59.697 50.000 0.00 0.00 0.00 4.17
809 872 2.355209 GGGAATCTTCTCACCAGTCACC 60.355 54.545 0.00 0.00 0.00 4.02
810 873 2.569404 AGGGAATCTTCTCACCAGTCAC 59.431 50.000 0.00 0.00 0.00 3.67
811 874 2.834549 GAGGGAATCTTCTCACCAGTCA 59.165 50.000 0.00 0.00 0.00 3.41
812 875 2.159170 CGAGGGAATCTTCTCACCAGTC 60.159 54.545 0.00 0.00 0.00 3.51
1026 1091 2.911143 GGCACCTCGTCCATCCAT 59.089 61.111 0.00 0.00 0.00 3.41
1027 1092 3.770040 CGGCACCTCGTCCATCCA 61.770 66.667 0.00 0.00 0.00 3.41
1212 1277 1.739929 CATGTACCTGCCGACGCAA 60.740 57.895 0.00 0.00 46.66 4.85
1225 1290 1.142965 CGATGGTGACGCCCATGTA 59.857 57.895 1.74 0.00 45.31 2.29
1360 1426 4.831674 TGAATCTTTCTGATGCAGAGGA 57.168 40.909 0.00 0.00 41.75 3.71
1414 1482 8.246430 TCTTACTTTGAGACTTGGAGACTTTA 57.754 34.615 0.00 0.00 0.00 1.85
1549 1619 5.998363 GGAGATGATAGCTCGGGTTATTTTT 59.002 40.000 0.00 0.00 33.19 1.94
1579 1649 1.402456 CGTTTGGCTACTGCGTCTACT 60.402 52.381 0.00 0.00 40.82 2.57
1628 1698 4.155826 CACAACATTGATCCGTATGTGGTT 59.844 41.667 9.02 0.00 36.92 3.67
1738 1808 1.454201 TTCGTGTTGGAGTTTGTGCA 58.546 45.000 0.00 0.00 0.00 4.57
1796 1866 6.723515 TCCTCCATCAACATGTTATTTGGAAA 59.276 34.615 24.85 17.73 0.00 3.13
1821 1891 7.582667 ATTGCTTTTAATATTACTCCGCCTT 57.417 32.000 0.00 0.00 0.00 4.35
1885 1955 6.708054 ACAAAACTATCAGACACCTCTTTCTG 59.292 38.462 0.00 0.00 40.65 3.02
1978 2048 7.553034 CGTGGTTCGTACATAAATAAGTCATC 58.447 38.462 0.00 0.00 34.52 2.92
2003 2073 7.149031 GGTGCATTTACGAATCAAAGTGTTTAC 60.149 37.037 0.00 0.00 0.00 2.01
2020 2090 8.902806 CATATCTGGAAAGTAAAGGTGCATTTA 58.097 33.333 0.00 0.00 0.00 1.40
2024 2094 4.640201 GCATATCTGGAAAGTAAAGGTGCA 59.360 41.667 0.00 0.00 0.00 4.57
2053 2123 8.688151 GTCATAAACTCTAGTGTCATTACCTCT 58.312 37.037 0.00 0.00 0.00 3.69
2083 2153 9.431887 GTGTTTTCAGTCAAATCTATGTACCTA 57.568 33.333 0.00 0.00 0.00 3.08
2092 2162 3.945285 ACGGTGTGTTTTCAGTCAAATCT 59.055 39.130 0.00 0.00 0.00 2.40
2217 2288 6.346096 CCTCAATATTAGTTTTCGGAGGACA 58.654 40.000 7.98 0.00 42.52 4.02
2330 2401 1.335132 GGAGGATACGTGGCTTGGGA 61.335 60.000 0.00 0.00 46.39 4.37
2376 2447 3.069872 TCAACACGGCAAGGTTCTTAGTA 59.930 43.478 0.00 0.00 0.00 1.82
2392 2463 7.475840 AGATTCAAGACACTCTTTTTCAACAC 58.524 34.615 0.00 0.00 33.78 3.32
2414 2485 6.704310 CCATTTTGAAAAGGGTTGATGAGAT 58.296 36.000 12.81 0.00 0.00 2.75
2430 2501 1.428448 CGACTGACTCGCCATTTTGA 58.572 50.000 0.00 0.00 35.06 2.69
2456 2527 2.071778 AACATTGGCACAGGTGACTT 57.928 45.000 6.84 0.00 42.39 3.01
2521 2592 6.937436 ATTTAAACTTTTGTCCGAGTCTGT 57.063 33.333 0.00 0.00 0.00 3.41
2762 2835 8.395633 CGTTTAATTCTGATTAATTCGGTCCTT 58.604 33.333 0.00 0.00 37.52 3.36
2786 2859 1.345741 CTCATGTCATATGGAGGGCGT 59.654 52.381 2.13 0.00 0.00 5.68
2846 2919 2.886523 CAAGGAGTGGAAGTGCATTGAA 59.113 45.455 0.00 0.00 0.00 2.69
2849 2922 2.664402 ACAAGGAGTGGAAGTGCATT 57.336 45.000 0.00 0.00 0.00 3.56
2880 2953 7.872061 ACTTAGGTATACCCATTCATCATCA 57.128 36.000 18.65 0.00 36.42 3.07
3017 3090 4.520874 TGCTTATTTGAACAATTGTCCGGA 59.479 37.500 12.39 0.00 0.00 5.14
3160 3233 1.443407 GCTAAGGATGCGAGGCAGA 59.557 57.895 0.00 0.00 43.65 4.26
3230 3306 0.842635 GGCAAGGAGATCCCATGTCT 59.157 55.000 0.00 0.00 37.41 3.41
3321 3397 3.566322 CGAGACCAGATCGAGTCCTTTAT 59.434 47.826 12.80 0.00 42.76 1.40
3332 3408 1.439644 GGCCTGACGAGACCAGATC 59.560 63.158 0.00 0.00 33.65 2.75
3424 3501 7.057894 ACTAGATGGTGTGGTTTTTAAAGTGA 58.942 34.615 0.00 0.00 0.00 3.41
3625 3702 2.472695 TCGCATTGAGCAGTTTAGGT 57.527 45.000 0.00 0.00 46.13 3.08
3655 3732 9.640963 CGATAACTCTTTTTCCTAAGAAGAAGA 57.359 33.333 6.82 6.82 45.83 2.87
3656 3733 9.425577 ACGATAACTCTTTTTCCTAAGAAGAAG 57.574 33.333 0.00 0.00 42.70 2.85
3657 3734 9.774413 AACGATAACTCTTTTTCCTAAGAAGAA 57.226 29.630 0.00 0.00 33.96 2.52
3670 3747 7.040409 AGCTCAATTTTGGAACGATAACTCTTT 60.040 33.333 0.00 0.00 0.00 2.52
3713 3790 5.710513 TCACATCTGAGTTTTTCATTGGG 57.289 39.130 0.00 0.00 34.68 4.12
3813 3901 4.622260 TGATCTGTGTTGAGAACCATGA 57.378 40.909 0.00 0.00 0.00 3.07
3823 3911 1.457346 GAGGGCCTTGATCTGTGTTG 58.543 55.000 7.89 0.00 0.00 3.33
4014 4125 2.371841 TCTCACCAACAACATAGCCAGT 59.628 45.455 0.00 0.00 0.00 4.00
4027 4138 4.329545 GCAGCCCGGTCTCACCAA 62.330 66.667 0.00 0.00 38.47 3.67
4088 4199 2.981560 GACCCGTAGTTGGCGTCGA 61.982 63.158 0.00 0.00 0.00 4.20
4133 4244 1.731969 GAGGTGGAAACGTCGTCCG 60.732 63.158 12.27 0.00 38.06 4.79
4165 4276 1.607801 CTCAGGTCGACCATCCAGCA 61.608 60.000 35.00 10.16 38.89 4.41
4283 4397 3.375299 GCACAACCATTCTCAGTCATACC 59.625 47.826 0.00 0.00 0.00 2.73
4362 4480 5.367060 AGGGTGTACTAGATTCTGGAATTCC 59.633 44.000 18.17 18.17 0.00 3.01
4371 4489 4.583489 TGGATCGAAGGGTGTACTAGATTC 59.417 45.833 0.00 0.00 0.00 2.52
4394 4512 6.094325 TCTGAATTAACCGCGTCCATTAATTT 59.906 34.615 19.62 10.23 38.18 1.82
4409 4527 7.980099 TCTTTACTCCCTTCGATCTGAATTAAC 59.020 37.037 0.00 0.00 35.63 2.01
4479 4620 7.172019 ACCACTAACAATTTAACGGTGAACTAG 59.828 37.037 0.00 0.00 0.00 2.57
4480 4621 6.991531 ACCACTAACAATTTAACGGTGAACTA 59.008 34.615 0.00 0.00 0.00 2.24
4497 4653 6.537660 AGCAATCGATTTAACCTACCACTAAC 59.462 38.462 8.21 0.00 0.00 2.34
4534 4690 2.480419 GGAAATAGCAACGGGATGATCG 59.520 50.000 0.00 0.00 0.00 3.69
4587 4743 8.674173 ACACCTTCTCAGATTATATCCTCTAGA 58.326 37.037 0.00 0.00 0.00 2.43
4591 4747 7.014711 TGTCACACCTTCTCAGATTATATCCTC 59.985 40.741 0.00 0.00 0.00 3.71
4592 4748 6.841229 TGTCACACCTTCTCAGATTATATCCT 59.159 38.462 0.00 0.00 0.00 3.24
4593 4749 7.014711 TCTGTCACACCTTCTCAGATTATATCC 59.985 40.741 0.00 0.00 31.51 2.59
4594 4750 7.865385 GTCTGTCACACCTTCTCAGATTATATC 59.135 40.741 0.00 0.00 37.46 1.63
4595 4751 7.563188 AGTCTGTCACACCTTCTCAGATTATAT 59.437 37.037 0.00 0.00 37.46 0.86
4596 4752 6.892456 AGTCTGTCACACCTTCTCAGATTATA 59.108 38.462 0.00 0.00 37.46 0.98
4599 4801 3.900601 AGTCTGTCACACCTTCTCAGATT 59.099 43.478 0.00 0.00 37.46 2.40
4602 4804 2.288702 CCAGTCTGTCACACCTTCTCAG 60.289 54.545 0.00 0.00 0.00 3.35
4604 4806 1.606737 GCCAGTCTGTCACACCTTCTC 60.607 57.143 0.00 0.00 0.00 2.87
4605 4807 0.394565 GCCAGTCTGTCACACCTTCT 59.605 55.000 0.00 0.00 0.00 2.85
4606 4808 0.106708 TGCCAGTCTGTCACACCTTC 59.893 55.000 0.00 0.00 0.00 3.46
4609 4811 0.601311 GTCTGCCAGTCTGTCACACC 60.601 60.000 0.00 0.00 0.00 4.16
4612 4814 1.506493 CTTGTCTGCCAGTCTGTCAC 58.494 55.000 0.00 0.00 0.00 3.67
4614 4816 0.250038 TGCTTGTCTGCCAGTCTGTC 60.250 55.000 0.00 0.00 0.00 3.51
4616 4818 1.563435 CGTGCTTGTCTGCCAGTCTG 61.563 60.000 0.00 0.00 0.00 3.51
4618 4820 0.671781 ATCGTGCTTGTCTGCCAGTC 60.672 55.000 0.00 0.00 0.00 3.51
4619 4821 0.952497 CATCGTGCTTGTCTGCCAGT 60.952 55.000 0.00 0.00 0.00 4.00
4631 4833 3.790123 GCTCCTCAATTTTAGCATCGTGC 60.790 47.826 2.28 2.28 45.46 5.34
4632 4834 3.624861 AGCTCCTCAATTTTAGCATCGTG 59.375 43.478 0.00 0.00 37.44 4.35
4633 4835 3.624861 CAGCTCCTCAATTTTAGCATCGT 59.375 43.478 0.00 0.00 37.44 3.73
4635 4837 3.243334 GCCAGCTCCTCAATTTTAGCATC 60.243 47.826 0.00 0.00 37.44 3.91
4636 4838 2.692041 GCCAGCTCCTCAATTTTAGCAT 59.308 45.455 0.00 0.00 37.44 3.79
4638 4840 2.373224 AGCCAGCTCCTCAATTTTAGC 58.627 47.619 0.00 0.00 35.16 3.09
4639 4841 5.431765 TCTTAGCCAGCTCCTCAATTTTAG 58.568 41.667 0.00 0.00 0.00 1.85
4640 4842 5.435686 TCTTAGCCAGCTCCTCAATTTTA 57.564 39.130 0.00 0.00 0.00 1.52
4641 4843 4.307032 TCTTAGCCAGCTCCTCAATTTT 57.693 40.909 0.00 0.00 0.00 1.82
4642 4844 4.307032 TTCTTAGCCAGCTCCTCAATTT 57.693 40.909 0.00 0.00 0.00 1.82
4643 4845 4.307032 TTTCTTAGCCAGCTCCTCAATT 57.693 40.909 0.00 0.00 0.00 2.32
4644 4846 4.018960 TCTTTTCTTAGCCAGCTCCTCAAT 60.019 41.667 0.00 0.00 0.00 2.57
4646 4848 2.906389 TCTTTTCTTAGCCAGCTCCTCA 59.094 45.455 0.00 0.00 0.00 3.86
4647 4849 3.055458 ACTCTTTTCTTAGCCAGCTCCTC 60.055 47.826 0.00 0.00 0.00 3.71
4648 4850 2.909662 ACTCTTTTCTTAGCCAGCTCCT 59.090 45.455 0.00 0.00 0.00 3.69
4649 4851 3.342377 ACTCTTTTCTTAGCCAGCTCC 57.658 47.619 0.00 0.00 0.00 4.70
4650 4852 3.120025 GCAACTCTTTTCTTAGCCAGCTC 60.120 47.826 0.00 0.00 0.00 4.09
4651 4853 2.816672 GCAACTCTTTTCTTAGCCAGCT 59.183 45.455 0.00 0.00 0.00 4.24
4652 4854 2.816672 AGCAACTCTTTTCTTAGCCAGC 59.183 45.455 0.00 0.00 0.00 4.85
4653 4855 3.365767 GCAGCAACTCTTTTCTTAGCCAG 60.366 47.826 0.00 0.00 0.00 4.85
4654 4856 2.554032 GCAGCAACTCTTTTCTTAGCCA 59.446 45.455 0.00 0.00 0.00 4.75
4655 4857 2.816672 AGCAGCAACTCTTTTCTTAGCC 59.183 45.455 0.00 0.00 0.00 3.93
4657 4859 7.426929 TCTTTAGCAGCAACTCTTTTCTTAG 57.573 36.000 0.00 0.00 0.00 2.18
4658 4860 7.986085 ATCTTTAGCAGCAACTCTTTTCTTA 57.014 32.000 0.00 0.00 0.00 2.10
4660 4862 7.986085 TTATCTTTAGCAGCAACTCTTTTCT 57.014 32.000 0.00 0.00 0.00 2.52
4664 4866 8.844244 CCATAATTATCTTTAGCAGCAACTCTT 58.156 33.333 0.00 0.00 0.00 2.85
4666 4868 8.159344 ACCATAATTATCTTTAGCAGCAACTC 57.841 34.615 0.00 0.00 0.00 3.01
4667 4869 9.627123 TTACCATAATTATCTTTAGCAGCAACT 57.373 29.630 0.00 0.00 0.00 3.16
4669 4871 9.066892 CCTTACCATAATTATCTTTAGCAGCAA 57.933 33.333 0.00 0.00 0.00 3.91
4670 4872 8.436778 TCCTTACCATAATTATCTTTAGCAGCA 58.563 33.333 0.00 0.00 0.00 4.41
4671 4873 8.848474 TCCTTACCATAATTATCTTTAGCAGC 57.152 34.615 0.00 0.00 0.00 5.25
4682 4884 9.967451 TCAAGTTCATGTTCCTTACCATAATTA 57.033 29.630 0.00 0.00 0.00 1.40
4683 4885 8.877864 TCAAGTTCATGTTCCTTACCATAATT 57.122 30.769 0.00 0.00 0.00 1.40
4684 4886 9.479549 AATCAAGTTCATGTTCCTTACCATAAT 57.520 29.630 0.00 0.00 0.00 1.28
4686 4888 8.877864 AAATCAAGTTCATGTTCCTTACCATA 57.122 30.769 0.00 0.00 0.00 2.74
4687 4889 7.781324 AAATCAAGTTCATGTTCCTTACCAT 57.219 32.000 0.00 0.00 0.00 3.55
4688 4890 7.286546 TGAAAATCAAGTTCATGTTCCTTACCA 59.713 33.333 0.00 0.00 30.08 3.25
4689 4891 7.657336 TGAAAATCAAGTTCATGTTCCTTACC 58.343 34.615 0.00 0.00 30.08 2.85
4692 4894 9.082313 ACTATGAAAATCAAGTTCATGTTCCTT 57.918 29.630 9.36 0.00 43.76 3.36
4693 4895 8.517878 CACTATGAAAATCAAGTTCATGTTCCT 58.482 33.333 9.36 0.00 43.76 3.36
4694 4896 7.274250 GCACTATGAAAATCAAGTTCATGTTCC 59.726 37.037 9.36 0.00 43.76 3.62
4695 4897 7.274250 GGCACTATGAAAATCAAGTTCATGTTC 59.726 37.037 9.36 0.00 43.76 3.18
4696 4898 7.039504 AGGCACTATGAAAATCAAGTTCATGTT 60.040 33.333 9.36 0.00 43.76 2.71
4698 4900 6.860080 AGGCACTATGAAAATCAAGTTCATG 58.140 36.000 9.36 0.00 43.76 3.07
4699 4901 6.096001 GGAGGCACTATGAAAATCAAGTTCAT 59.904 38.462 5.13 5.13 45.42 2.57
4700 4902 5.415701 GGAGGCACTATGAAAATCAAGTTCA 59.584 40.000 0.00 0.00 41.55 3.18
4701 4903 5.649831 AGGAGGCACTATGAAAATCAAGTTC 59.350 40.000 0.00 0.00 41.55 3.01
4702 4904 5.574188 AGGAGGCACTATGAAAATCAAGTT 58.426 37.500 0.00 0.00 41.55 2.66
4704 4906 5.416952 ACAAGGAGGCACTATGAAAATCAAG 59.583 40.000 0.00 0.00 41.55 3.02
4708 4910 7.615365 TGAATAACAAGGAGGCACTATGAAAAT 59.385 33.333 0.00 0.00 41.55 1.82
4710 4912 6.480763 TGAATAACAAGGAGGCACTATGAAA 58.519 36.000 0.00 0.00 41.55 2.69
4711 4913 6.061022 TGAATAACAAGGAGGCACTATGAA 57.939 37.500 0.00 0.00 41.55 2.57
4713 4915 6.732154 CAATGAATAACAAGGAGGCACTATG 58.268 40.000 0.00 0.00 41.55 2.23
4714 4916 5.300286 GCAATGAATAACAAGGAGGCACTAT 59.700 40.000 0.00 0.00 41.55 2.12
4719 4921 3.696051 TCTGCAATGAATAACAAGGAGGC 59.304 43.478 0.00 0.00 31.12 4.70
4720 4922 7.572523 TTATCTGCAATGAATAACAAGGAGG 57.427 36.000 0.00 0.00 31.12 4.30
4735 4937 9.797556 CAGATCAATCTCAATTTTTATCTGCAA 57.202 29.630 0.00 0.00 34.22 4.08
4736 4938 8.410912 CCAGATCAATCTCAATTTTTATCTGCA 58.589 33.333 0.00 0.00 35.34 4.41
4738 4940 9.128404 TCCCAGATCAATCTCAATTTTTATCTG 57.872 33.333 0.00 0.00 35.82 2.90
4743 4945 7.729124 ACATCCCAGATCAATCTCAATTTTT 57.271 32.000 0.00 0.00 34.22 1.94
4744 4946 7.398047 TGAACATCCCAGATCAATCTCAATTTT 59.602 33.333 0.00 0.00 34.22 1.82
4745 4947 6.893554 TGAACATCCCAGATCAATCTCAATTT 59.106 34.615 0.00 0.00 34.22 1.82
4746 4948 6.429151 TGAACATCCCAGATCAATCTCAATT 58.571 36.000 0.00 0.00 34.22 2.32
4747 4949 6.009908 TGAACATCCCAGATCAATCTCAAT 57.990 37.500 0.00 0.00 34.22 2.57
4748 4950 5.440207 TGAACATCCCAGATCAATCTCAA 57.560 39.130 0.00 0.00 34.22 3.02
4749 4951 5.440207 TTGAACATCCCAGATCAATCTCA 57.560 39.130 0.00 0.00 34.22 3.27
4750 4952 6.956202 AATTGAACATCCCAGATCAATCTC 57.044 37.500 0.00 0.00 39.24 2.75
4754 4956 9.081204 CCATATTAATTGAACATCCCAGATCAA 57.919 33.333 0.00 0.00 35.26 2.57
4755 4957 8.226810 ACCATATTAATTGAACATCCCAGATCA 58.773 33.333 0.00 0.00 0.00 2.92
4756 4958 8.641498 ACCATATTAATTGAACATCCCAGATC 57.359 34.615 0.00 0.00 0.00 2.75
4757 4959 8.863086 CAACCATATTAATTGAACATCCCAGAT 58.137 33.333 0.00 0.00 0.00 2.90
4759 4961 8.236585 TCAACCATATTAATTGAACATCCCAG 57.763 34.615 0.00 0.00 29.56 4.45
4760 4962 8.780616 ATCAACCATATTAATTGAACATCCCA 57.219 30.769 0.00 0.00 36.03 4.37
4761 4963 9.696917 GAATCAACCATATTAATTGAACATCCC 57.303 33.333 0.00 0.00 36.03 3.85
4774 4976 7.537596 TGTCCAAGTTTGAATCAACCATATT 57.462 32.000 0.00 0.00 0.00 1.28
4775 4977 7.722949 ATGTCCAAGTTTGAATCAACCATAT 57.277 32.000 0.00 0.00 0.00 1.78
4777 4979 6.423776 AATGTCCAAGTTTGAATCAACCAT 57.576 33.333 0.00 0.00 0.00 3.55
4778 4980 5.867903 AATGTCCAAGTTTGAATCAACCA 57.132 34.783 0.00 0.00 0.00 3.67
4779 4981 7.702348 GCTATAATGTCCAAGTTTGAATCAACC 59.298 37.037 0.00 0.00 0.00 3.77
4780 4982 8.462016 AGCTATAATGTCCAAGTTTGAATCAAC 58.538 33.333 0.00 0.00 0.00 3.18
4782 4984 9.679661 TTAGCTATAATGTCCAAGTTTGAATCA 57.320 29.630 0.00 0.00 0.00 2.57
4784 4986 9.905713 TCTTAGCTATAATGTCCAAGTTTGAAT 57.094 29.630 0.00 0.00 0.00 2.57
4785 4987 9.905713 ATCTTAGCTATAATGTCCAAGTTTGAA 57.094 29.630 0.00 0.00 0.00 2.69
4786 4988 9.905713 AATCTTAGCTATAATGTCCAAGTTTGA 57.094 29.630 0.00 0.00 0.00 2.69
4791 4993 8.944029 CCATGAATCTTAGCTATAATGTCCAAG 58.056 37.037 0.00 0.00 0.00 3.61
4793 4995 7.879677 CACCATGAATCTTAGCTATAATGTCCA 59.120 37.037 0.00 0.00 0.00 4.02
4794 4996 7.335422 CCACCATGAATCTTAGCTATAATGTCC 59.665 40.741 0.00 0.00 0.00 4.02
4795 4997 8.097038 TCCACCATGAATCTTAGCTATAATGTC 58.903 37.037 0.00 0.00 0.00 3.06
4796 4998 7.880195 GTCCACCATGAATCTTAGCTATAATGT 59.120 37.037 0.00 0.00 0.00 2.71
4797 4999 7.879677 TGTCCACCATGAATCTTAGCTATAATG 59.120 37.037 0.00 0.00 0.00 1.90
4798 5000 7.880195 GTGTCCACCATGAATCTTAGCTATAAT 59.120 37.037 0.00 0.00 0.00 1.28
4799 5001 7.217200 GTGTCCACCATGAATCTTAGCTATAA 58.783 38.462 0.00 0.00 0.00 0.98
4800 5002 6.516693 CGTGTCCACCATGAATCTTAGCTATA 60.517 42.308 0.00 0.00 31.20 1.31
4801 5003 5.615289 GTGTCCACCATGAATCTTAGCTAT 58.385 41.667 0.00 0.00 0.00 2.97
4802 5004 4.441495 CGTGTCCACCATGAATCTTAGCTA 60.441 45.833 0.00 0.00 31.20 3.32
4803 5005 3.679917 CGTGTCCACCATGAATCTTAGCT 60.680 47.826 0.00 0.00 31.20 3.32
4804 5006 2.609459 CGTGTCCACCATGAATCTTAGC 59.391 50.000 0.00 0.00 31.20 3.09
4805 5007 3.198068 CCGTGTCCACCATGAATCTTAG 58.802 50.000 0.00 0.00 31.20 2.18
4806 5008 2.569853 ACCGTGTCCACCATGAATCTTA 59.430 45.455 0.00 0.00 31.20 2.10
4815 5250 3.931247 CCCGAACCGTGTCCACCA 61.931 66.667 0.00 0.00 0.00 4.17
4903 5976 2.282887 CCCCCAAAACAGGACCGG 60.283 66.667 0.00 0.00 0.00 5.28
4925 5998 2.202878 GCTTCATCAGCGCCGGTA 60.203 61.111 2.29 0.00 39.29 4.02
4937 6010 1.908299 TCAGTCTGCTCGGGCTTCA 60.908 57.895 9.62 0.00 39.59 3.02
4986 6069 2.504899 CTCGCACACATCGACGCT 60.505 61.111 0.00 0.00 32.08 5.07
5135 6237 2.135933 GAGAGAGAGAGAGAGCTACGC 58.864 57.143 0.00 0.00 0.00 4.42
5170 6278 3.556999 TCATGCACTAGAGACTAGGACC 58.443 50.000 0.00 0.00 0.00 4.46
5194 6302 9.823647 CATAACAAACTCATCTAGATAAGGTGT 57.176 33.333 7.82 8.00 37.60 4.16
5279 6430 6.216569 GTCATATGTTCATGTATCTGTCGGT 58.783 40.000 1.90 0.00 0.00 4.69
5280 6431 5.635280 GGTCATATGTTCATGTATCTGTCGG 59.365 44.000 1.90 0.00 0.00 4.79
5300 6624 2.169352 GCAATAGGAGAGAAGCAGGTCA 59.831 50.000 0.00 0.00 0.00 4.02
5377 6725 0.320247 CAGCTGCTGTTCGAGGAGTT 60.320 55.000 21.21 0.00 42.13 3.01
5395 6743 0.250467 GCTCTGAAGGTGAAGCCACA 60.250 55.000 0.00 0.00 44.93 4.17
5448 6796 1.782807 GTATGAAAACGCGTCGCCA 59.217 52.632 14.44 11.19 0.00 5.69
5475 6823 1.604593 ACGTACACCGGCTACCAGT 60.605 57.895 0.00 0.00 42.24 4.00
5511 6902 1.541588 GACCTCAAACCTGGCATCAAC 59.458 52.381 0.00 0.00 0.00 3.18
5515 6908 0.321653 GTCGACCTCAAACCTGGCAT 60.322 55.000 3.51 0.00 0.00 4.40
5611 7004 3.269592 TCCCTTCCTCACTTTCCAGTA 57.730 47.619 0.00 0.00 0.00 2.74
5655 7049 2.282887 GCCCCCGTGTGAACCATT 60.283 61.111 0.00 0.00 0.00 3.16
5710 7127 2.159476 TCGGACCGAGAAAACATAGTCG 60.159 50.000 13.88 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.