Multiple sequence alignment - TraesCS3B01G495400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G495400 chr3B 100.000 3772 0 0 1 3772 739514436 739510665 0.000000e+00 6966.0
1 TraesCS3B01G495400 chr3B 95.906 171 7 0 3176 3346 702842245 702842075 1.030000e-70 278.0
2 TraesCS3B01G495400 chr3B 91.795 195 14 2 3164 3357 26771631 26771438 1.730000e-68 270.0
3 TraesCS3B01G495400 chr3B 91.667 96 8 0 2442 2537 739596131 739596036 2.360000e-27 134.0
4 TraesCS3B01G495400 chr3B 91.111 90 8 0 2448 2537 739651483 739651394 5.120000e-24 122.0
5 TraesCS3B01G495400 chr3A 94.146 1247 47 8 1928 3172 693194346 693193124 0.000000e+00 1875.0
6 TraesCS3B01G495400 chr3A 93.723 940 50 4 1002 1936 693195366 693194431 0.000000e+00 1400.0
7 TraesCS3B01G495400 chr3A 85.384 691 40 16 351 1002 693196076 693195408 0.000000e+00 660.0
8 TraesCS3B01G495400 chr3A 96.311 244 9 0 1 244 693196508 693196265 5.870000e-108 401.0
9 TraesCS3B01G495400 chr3A 80.223 359 34 21 3350 3700 693193127 693192798 6.300000e-58 235.0
10 TraesCS3B01G495400 chr2B 93.367 196 9 4 3162 3355 89545525 89545332 1.710000e-73 287.0
11 TraesCS3B01G495400 chr2B 91.837 196 13 3 3166 3360 615733282 615733089 1.730000e-68 270.0
12 TraesCS3B01G495400 chr7B 93.264 193 10 3 3167 3357 662001446 662001637 7.980000e-72 281.0
13 TraesCS3B01G495400 chr5B 95.977 174 6 1 3176 3348 363665302 363665475 7.980000e-72 281.0
14 TraesCS3B01G495400 chr1D 95.977 174 6 1 3176 3348 299766211 299766038 7.980000e-72 281.0
15 TraesCS3B01G495400 chr6B 92.746 193 11 3 3166 3356 19921075 19921266 3.710000e-70 276.0
16 TraesCS3B01G495400 chr6B 93.989 183 10 1 3166 3347 213152372 213152554 3.710000e-70 276.0
17 TraesCS3B01G495400 chr4A 72.576 722 163 20 1979 2672 709998131 709997417 1.780000e-48 204.0
18 TraesCS3B01G495400 chr7A 77.492 311 54 11 2383 2679 8549729 8550037 5.010000e-39 172.0
19 TraesCS3B01G495400 chr7A 71.646 723 168 24 1979 2672 26573017 26572303 8.380000e-37 165.0
20 TraesCS3B01G495400 chr7D 71.409 724 171 21 1989 2679 7535703 7534983 1.400000e-34 158.0
21 TraesCS3B01G495400 chr4B 88.060 67 8 0 3692 3758 656811700 656811766 3.120000e-11 80.5
22 TraesCS3B01G495400 chr4B 86.567 67 9 0 3692 3758 659667250 659667184 1.450000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G495400 chr3B 739510665 739514436 3771 True 6966.0 6966 100.0000 1 3772 1 chr3B.!!$R3 3771
1 TraesCS3B01G495400 chr3A 693192798 693196508 3710 True 914.2 1875 89.9574 1 3700 5 chr3A.!!$R1 3699
2 TraesCS3B01G495400 chr4A 709997417 709998131 714 True 204.0 204 72.5760 1979 2672 1 chr4A.!!$R1 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 375 0.250295 CCTTCCAGCCGAACAAGTCA 60.25 55.0 0.0 0.0 0.0 3.41 F
1480 1672 0.039798 GACCACTAACGACGACTGCA 60.04 55.0 0.0 0.0 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 2369 0.464373 CAATGGTGTGGAGCGGCTAT 60.464 55.0 0.6 0.0 0.0 2.97 R
3259 3571 0.107831 TACAACCCAGGTCAGCACAC 59.892 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 5.986135 CCATATAACTACTGTGTTGCCTCTC 59.014 44.000 0.00 0.00 0.00 3.20
219 220 9.162793 GATGATCGAGCAACAAACTAAAATATG 57.837 33.333 7.76 0.00 0.00 1.78
225 226 6.904498 AGCAACAAACTAAAATATGCACGTA 58.096 32.000 0.00 0.00 34.89 3.57
289 290 4.989279 ATTTTCACTCTGTGCAACTTGT 57.011 36.364 0.00 0.00 38.04 3.16
301 302 1.378514 AACTTGTATGCAGGGGCGG 60.379 57.895 0.00 0.00 45.35 6.13
331 336 6.811253 TTTTTAATCAGCTGTGTATCCGTT 57.189 33.333 14.67 0.50 0.00 4.44
344 360 7.254353 GCTGTGTATCCGTTAGAAAATACCTTC 60.254 40.741 0.00 0.00 0.00 3.46
359 375 0.250295 CCTTCCAGCCGAACAAGTCA 60.250 55.000 0.00 0.00 0.00 3.41
375 487 5.261370 CAAGTCATTTGTCAACTCGAGAG 57.739 43.478 21.68 11.37 31.92 3.20
403 519 5.178067 TCATTGTATACTTCATCAGCGCATG 59.822 40.000 11.47 5.65 0.00 4.06
409 525 4.282950 ACTTCATCAGCGCATGTTATTG 57.717 40.909 11.47 0.00 0.00 1.90
481 599 1.073025 ATGCTGCTGACGGTTGGAA 59.927 52.632 0.00 0.00 0.00 3.53
507 625 1.822990 CATGCTGCTGTTTGGAAGGAT 59.177 47.619 0.00 0.00 0.00 3.24
511 629 3.054139 TGCTGCTGTTTGGAAGGATAGAT 60.054 43.478 0.00 0.00 0.00 1.98
548 666 5.705441 CACTGGTGTAGGAATCAAAAAGCTA 59.295 40.000 0.00 0.00 0.00 3.32
581 699 9.793259 TCTCAAGAACTAGTCATTTAACCAAAT 57.207 29.630 0.00 0.00 34.60 2.32
583 701 8.717821 TCAAGAACTAGTCATTTAACCAAATCG 58.282 33.333 0.00 0.00 31.82 3.34
584 702 7.073342 AGAACTAGTCATTTAACCAAATCGC 57.927 36.000 0.00 0.00 31.82 4.58
585 703 5.464965 ACTAGTCATTTAACCAAATCGCG 57.535 39.130 0.00 0.00 31.82 5.87
586 704 5.172934 ACTAGTCATTTAACCAAATCGCGA 58.827 37.500 13.09 13.09 31.82 5.87
587 705 4.336532 AGTCATTTAACCAAATCGCGAC 57.663 40.909 12.93 0.00 31.82 5.19
588 706 3.749088 AGTCATTTAACCAAATCGCGACA 59.251 39.130 12.93 0.00 31.82 4.35
589 707 4.214545 AGTCATTTAACCAAATCGCGACAA 59.785 37.500 12.93 0.00 31.82 3.18
590 708 4.912766 GTCATTTAACCAAATCGCGACAAA 59.087 37.500 12.93 3.80 31.82 2.83
591 709 5.059221 GTCATTTAACCAAATCGCGACAAAG 59.941 40.000 12.93 3.34 31.82 2.77
592 710 3.546002 TTAACCAAATCGCGACAAAGG 57.454 42.857 12.93 14.13 0.00 3.11
644 762 5.296780 AGGTTATCCGCACAGTTTCATATTG 59.703 40.000 0.00 0.00 39.05 1.90
658 787 6.851836 AGTTTCATATTGGATCCTTCCTCCTA 59.148 38.462 14.23 0.00 43.07 2.94
698 827 3.442273 ACATACGGATTTTGGACGCAATT 59.558 39.130 0.00 0.00 0.00 2.32
709 838 4.676444 CGCAATTGTCTGATGGCG 57.324 55.556 7.40 0.00 42.40 5.69
711 840 1.226773 GCAATTGTCTGATGGCGGC 60.227 57.895 7.40 0.00 0.00 6.53
712 841 1.434696 CAATTGTCTGATGGCGGCC 59.565 57.895 13.32 13.32 0.00 6.13
713 842 2.114670 AATTGTCTGATGGCGGCCG 61.115 57.895 24.05 24.05 0.00 6.13
714 843 4.776322 TTGTCTGATGGCGGCCGG 62.776 66.667 29.38 9.14 0.00 6.13
734 863 2.481568 GGTTATACCGGCTATTTTCCGC 59.518 50.000 0.00 0.00 45.19 5.54
735 864 3.396560 GTTATACCGGCTATTTTCCGCT 58.603 45.455 0.00 0.00 45.19 5.52
736 865 4.559153 GTTATACCGGCTATTTTCCGCTA 58.441 43.478 0.00 0.00 45.19 4.26
737 866 2.806608 TACCGGCTATTTTCCGCTAG 57.193 50.000 0.00 0.00 45.19 3.42
740 869 1.228657 CGGCTATTTTCCGCTAGGGC 61.229 60.000 0.19 0.00 40.46 5.19
758 887 0.530288 GCGTGGGTGGCACATTTTAT 59.470 50.000 20.82 0.00 44.52 1.40
759 888 1.067213 GCGTGGGTGGCACATTTTATT 60.067 47.619 20.82 0.00 44.52 1.40
769 898 7.821846 GGGTGGCACATTTTATTCTTCAAATAA 59.178 33.333 20.82 0.00 44.52 1.40
803 932 0.943673 TCGGTTGTGTGCATCACTTG 59.056 50.000 16.70 7.33 46.27 3.16
813 942 1.202794 TGCATCACTTGGTTGCAGAGA 60.203 47.619 4.32 0.00 41.18 3.10
819 948 2.111999 CTTGGTTGCAGAGACCGGGA 62.112 60.000 6.32 0.00 40.13 5.14
820 949 1.488705 TTGGTTGCAGAGACCGGGAT 61.489 55.000 6.32 0.00 40.13 3.85
821 950 0.616395 TGGTTGCAGAGACCGGGATA 60.616 55.000 6.32 0.00 40.13 2.59
822 951 0.759346 GGTTGCAGAGACCGGGATAT 59.241 55.000 6.32 0.00 0.00 1.63
835 964 2.225017 CCGGGATATATGCCCACCTTTT 60.225 50.000 16.88 0.00 46.36 2.27
836 965 3.081804 CGGGATATATGCCCACCTTTTC 58.918 50.000 16.88 0.00 46.36 2.29
837 966 3.497763 CGGGATATATGCCCACCTTTTCA 60.498 47.826 16.88 0.00 46.36 2.69
852 981 7.272244 CCACCTTTTCAAAGAAACCTGTAAAT 58.728 34.615 0.56 0.00 38.28 1.40
878 1027 7.031372 TGCTTCAGTTTTCATTCATGCTTATC 58.969 34.615 0.00 0.00 0.00 1.75
896 1045 9.862371 ATGCTTATCTTATTTATGGACTACGAG 57.138 33.333 0.00 0.00 0.00 4.18
897 1046 8.304596 TGCTTATCTTATTTATGGACTACGAGG 58.695 37.037 0.00 0.00 0.00 4.63
898 1047 8.521176 GCTTATCTTATTTATGGACTACGAGGA 58.479 37.037 0.00 0.00 0.00 3.71
899 1048 9.843334 CTTATCTTATTTATGGACTACGAGGAC 57.157 37.037 0.00 0.00 0.00 3.85
946 1095 8.402326 GTTTAGAAACCGTCAAAAGAACAAAT 57.598 30.769 0.00 0.00 32.82 2.32
952 1101 5.134661 ACCGTCAAAAGAACAAATCCCTTA 58.865 37.500 0.00 0.00 0.00 2.69
982 1131 6.335777 TCTGCTTTATAAGAACTTCCCGTAC 58.664 40.000 0.00 0.00 0.00 3.67
1002 1151 3.202906 ACGCTTCATATACGCAACCATT 58.797 40.909 0.00 0.00 0.00 3.16
1003 1152 4.373527 ACGCTTCATATACGCAACCATTA 58.626 39.130 0.00 0.00 0.00 1.90
1004 1153 4.210537 ACGCTTCATATACGCAACCATTAC 59.789 41.667 0.00 0.00 0.00 1.89
1027 1218 5.756833 ACACAAACTTAAGTTAACGCTAGCT 59.243 36.000 20.83 0.00 37.25 3.32
1028 1219 6.925165 ACACAAACTTAAGTTAACGCTAGCTA 59.075 34.615 20.83 0.00 37.25 3.32
1029 1220 7.115947 ACACAAACTTAAGTTAACGCTAGCTAG 59.884 37.037 20.83 16.84 37.25 3.42
1030 1221 6.090493 ACAAACTTAAGTTAACGCTAGCTAGC 59.910 38.462 31.88 31.88 40.57 3.42
1051 1242 2.341846 TTTTCAGTCCTGTGACCACC 57.658 50.000 0.00 0.00 42.81 4.61
1056 1247 1.675641 GTCCTGTGACCACCATGGC 60.676 63.158 13.04 0.00 42.67 4.40
1081 1272 1.008329 CAGCAGCAAGAAGAGCTAGC 58.992 55.000 6.62 6.62 41.14 3.42
1084 1275 1.153469 AGCAAGAAGAGCTAGCGGC 60.153 57.895 9.55 5.77 41.32 6.53
1178 1369 1.650912 GTAATCGTCCGCTCGCCTA 59.349 57.895 0.00 0.00 0.00 3.93
1180 1371 0.240145 TAATCGTCCGCTCGCCTATG 59.760 55.000 0.00 0.00 0.00 2.23
1225 1416 2.109126 CAAGGAGGTAGCAAGCGCC 61.109 63.158 2.29 0.00 42.78 6.53
1269 1460 3.058160 CCGCAGCTCCAACAAGGG 61.058 66.667 0.00 0.00 38.24 3.95
1319 1510 0.388649 CGCCGGCATCATACTCTACC 60.389 60.000 28.98 0.00 0.00 3.18
1325 1516 2.361119 GGCATCATACTCTACCACGTCA 59.639 50.000 0.00 0.00 0.00 4.35
1333 1524 3.332493 CTACCACGTCACCGTCGGG 62.332 68.421 17.28 4.77 46.28 5.14
1365 1556 2.579787 CGGCGTGGTCGACATCTC 60.580 66.667 18.91 4.35 46.73 2.75
1471 1663 1.272490 TGCTCAGGAAGACCACTAACG 59.728 52.381 0.00 0.00 38.94 3.18
1480 1672 0.039798 GACCACTAACGACGACTGCA 60.040 55.000 0.00 0.00 0.00 4.41
1509 1701 3.699894 AGCAGCTGCCTGTACGCT 61.700 61.111 34.39 11.28 43.38 5.07
1520 1712 0.457337 CTGTACGCTTACGGGTCACC 60.457 60.000 1.23 0.00 46.04 4.02
1561 1753 1.290639 GGCTACCTCGGCTATGAGC 59.709 63.158 0.00 0.00 41.46 4.26
1617 1809 3.934391 CTCCGGGAGCGTGGTGTTC 62.934 68.421 11.83 0.00 0.00 3.18
1635 1827 3.368571 GGCTGCAGCACCCAGAAC 61.369 66.667 37.63 15.84 44.36 3.01
1638 1830 1.526686 CTGCAGCACCCAGAACACA 60.527 57.895 0.00 0.00 32.03 3.72
1640 1832 2.912624 GCAGCACCCAGAACACAGC 61.913 63.158 0.00 0.00 0.00 4.40
1643 1835 2.320587 GCACCCAGAACACAGCGAG 61.321 63.158 0.00 0.00 0.00 5.03
1695 1887 0.900421 TCTCCATCCTGTCACAGCTG 59.100 55.000 13.48 13.48 0.00 4.24
1711 1903 0.607489 GCTGCACATCACCAGGTTCT 60.607 55.000 0.00 0.00 0.00 3.01
1729 1923 7.326454 CAGGTTCTGATTCTATGTTGAGAGAA 58.674 38.462 0.00 0.00 33.98 2.87
1969 2258 5.536161 CGAGGGGGTAATTTTGAATCATGAT 59.464 40.000 1.18 1.18 0.00 2.45
2080 2369 1.666553 CCGTGCCGCAGACTAAACA 60.667 57.895 0.00 0.00 0.00 2.83
2333 2622 1.901464 ACCGGCCGTGAAAAGCAAT 60.901 52.632 26.12 0.00 0.00 3.56
2674 2984 0.252239 TGGGTGCTCCTCTTCTAGCA 60.252 55.000 4.53 0.00 46.11 3.49
2690 3000 4.019858 TCTAGCAAGATAGTGTGTCAGCT 58.980 43.478 0.00 0.00 34.84 4.24
2691 3001 3.244033 AGCAAGATAGTGTGTCAGCTC 57.756 47.619 0.00 0.00 0.00 4.09
2705 3015 2.106566 TCAGCTCTCAATCCTCCTGAC 58.893 52.381 0.00 0.00 0.00 3.51
2712 3022 5.526846 GCTCTCAATCCTCCTGACTTAAATG 59.473 44.000 0.00 0.00 0.00 2.32
2718 3028 4.101114 TCCTCCTGACTTAAATGCTACCA 58.899 43.478 0.00 0.00 0.00 3.25
2725 3035 6.312399 TGACTTAAATGCTACCAAGTGTTG 57.688 37.500 0.00 0.00 31.57 3.33
2742 3052 1.416772 GTTGGGGCCCTTAGCTAGTAG 59.583 57.143 25.93 0.00 43.05 2.57
2743 3053 0.640495 TGGGGCCCTTAGCTAGTAGT 59.360 55.000 25.93 0.00 43.05 2.73
2745 3055 2.246469 GGGGCCCTTAGCTAGTAGTAC 58.754 57.143 24.38 0.00 43.05 2.73
2747 3057 3.303049 GGGCCCTTAGCTAGTAGTACAA 58.697 50.000 17.04 0.00 43.05 2.41
2748 3058 3.708121 GGGCCCTTAGCTAGTAGTACAAA 59.292 47.826 17.04 0.00 43.05 2.83
2749 3059 4.162888 GGGCCCTTAGCTAGTAGTACAAAA 59.837 45.833 17.04 0.00 43.05 2.44
2750 3060 5.114780 GGCCCTTAGCTAGTAGTACAAAAC 58.885 45.833 2.52 0.00 43.05 2.43
2751 3061 5.105023 GGCCCTTAGCTAGTAGTACAAAACT 60.105 44.000 2.52 0.00 43.05 2.66
2752 3062 5.811100 GCCCTTAGCTAGTAGTACAAAACTG 59.189 44.000 2.52 0.00 37.51 3.16
2753 3063 6.573876 GCCCTTAGCTAGTAGTACAAAACTGT 60.574 42.308 2.52 0.00 37.51 3.55
2754 3064 7.363268 GCCCTTAGCTAGTAGTACAAAACTGTA 60.363 40.741 2.52 0.00 37.51 2.74
2755 3065 8.526147 CCCTTAGCTAGTAGTACAAAACTGTAA 58.474 37.037 2.52 0.00 39.39 2.41
2756 3066 9.570488 CCTTAGCTAGTAGTACAAAACTGTAAG 57.430 37.037 2.52 5.53 39.39 2.34
2757 3067 8.976986 TTAGCTAGTAGTACAAAACTGTAAGC 57.023 34.615 2.52 2.44 39.39 3.09
2758 3068 6.091437 AGCTAGTAGTACAAAACTGTAAGCG 58.909 40.000 2.52 0.00 39.94 4.68
2759 3069 5.860716 GCTAGTAGTACAAAACTGTAAGCGT 59.139 40.000 2.52 0.00 39.39 5.07
2760 3070 7.023575 GCTAGTAGTACAAAACTGTAAGCGTA 58.976 38.462 2.52 0.00 39.39 4.42
2761 3071 7.538678 GCTAGTAGTACAAAACTGTAAGCGTAA 59.461 37.037 2.52 0.00 39.39 3.18
2762 3072 9.398170 CTAGTAGTACAAAACTGTAAGCGTAAA 57.602 33.333 2.52 0.00 39.39 2.01
2763 3073 8.290663 AGTAGTACAAAACTGTAAGCGTAAAG 57.709 34.615 2.52 0.00 39.39 1.85
2764 3074 5.982324 AGTACAAAACTGTAAGCGTAAAGC 58.018 37.500 0.00 0.00 41.29 3.51
2783 3093 8.234546 CGTAAAGCTAATTAAGGTTGTGTTGAT 58.765 33.333 0.00 0.00 45.11 2.57
2816 3126 8.674263 ATGCAGATATATATTCTTGCTTAGGC 57.326 34.615 19.65 0.00 39.26 3.93
2817 3127 7.050377 TGCAGATATATATTCTTGCTTAGGCC 58.950 38.462 19.65 0.00 37.74 5.19
2826 3136 2.124320 GCTTAGGCCGGCCATGAA 60.124 61.111 45.13 32.23 38.92 2.57
2838 3148 3.458189 CGGCCATGAAAGTAAGACTAGG 58.542 50.000 2.24 0.00 0.00 3.02
2904 3215 2.420022 GTCCATGTAAGATGCTTGCGTT 59.580 45.455 0.00 0.00 0.00 4.84
2905 3216 3.621268 GTCCATGTAAGATGCTTGCGTTA 59.379 43.478 0.00 0.00 0.00 3.18
2915 3226 5.605534 AGATGCTTGCGTTAAGATATGAGT 58.394 37.500 5.86 0.00 38.76 3.41
2975 3287 2.023673 ACATGATGGTGCATAAACCGG 58.976 47.619 0.00 0.00 43.73 5.28
2989 3301 4.506255 CCGGCCTCCCCACCAATC 62.506 72.222 0.00 0.00 0.00 2.67
3014 3326 6.367983 CAAGAAAAAGAGGGGATATGGATGA 58.632 40.000 0.00 0.00 0.00 2.92
3033 3345 8.055279 TGGATGATTTACTTTGATTGACTTCC 57.945 34.615 0.00 0.00 0.00 3.46
3075 3387 9.919416 TCACCAATCTAGGAAATGAATTCATTA 57.081 29.630 29.16 15.82 45.06 1.90
3089 3401 8.657074 ATGAATTCATTATTTGATGCAGGTTG 57.343 30.769 15.36 0.00 33.34 3.77
3092 3404 5.233957 TCATTATTTGATGCAGGTTGTCG 57.766 39.130 0.00 0.00 0.00 4.35
3095 3407 0.592637 TTTGATGCAGGTTGTCGCAG 59.407 50.000 0.00 0.00 42.37 5.18
3114 3426 4.377431 CGCAGTCTTCACTATTTGACCAAC 60.377 45.833 0.00 0.00 32.26 3.77
3123 3435 2.770164 ATTTGACCAACGAGGGAGAG 57.230 50.000 4.18 0.00 43.89 3.20
3155 3467 3.699538 GGGACAAAGGTTGAGAAAACACT 59.300 43.478 0.00 0.00 0.00 3.55
3172 3484 8.475639 AGAAAACACTAAGCGGAGATAAATAGA 58.524 33.333 0.00 0.00 0.00 1.98
3174 3486 9.614792 AAAACACTAAGCGGAGATAAATAGAAT 57.385 29.630 0.00 0.00 0.00 2.40
3176 3488 9.915629 AACACTAAGCGGAGATAAATAGAATAG 57.084 33.333 0.00 0.00 0.00 1.73
3177 3489 9.080097 ACACTAAGCGGAGATAAATAGAATAGT 57.920 33.333 0.00 0.00 0.00 2.12
3178 3490 9.915629 CACTAAGCGGAGATAAATAGAATAGTT 57.084 33.333 0.00 0.00 31.73 2.24
3182 3494 8.089115 AGCGGAGATAAATAGAATAGTTTTGC 57.911 34.615 0.00 0.00 28.73 3.68
3183 3495 7.934120 AGCGGAGATAAATAGAATAGTTTTGCT 59.066 33.333 0.00 0.00 28.73 3.91
3184 3496 9.204570 GCGGAGATAAATAGAATAGTTTTGCTA 57.795 33.333 0.00 0.00 28.73 3.49
3223 3535 8.908786 TGAGATATAATTTGGTCTCATTCACC 57.091 34.615 10.50 0.00 41.40 4.02
3224 3536 8.717717 TGAGATATAATTTGGTCTCATTCACCT 58.282 33.333 10.50 0.00 41.40 4.00
3225 3537 9.566432 GAGATATAATTTGGTCTCATTCACCTT 57.434 33.333 8.11 0.00 37.60 3.50
3226 3538 9.927081 AGATATAATTTGGTCTCATTCACCTTT 57.073 29.630 0.00 0.00 34.66 3.11
3228 3540 9.927081 ATATAATTTGGTCTCATTCACCTTTCT 57.073 29.630 0.00 0.00 34.66 2.52
3230 3542 7.693969 AATTTGGTCTCATTCACCTTTCTAG 57.306 36.000 0.00 0.00 34.66 2.43
3231 3543 4.207891 TGGTCTCATTCACCTTTCTAGC 57.792 45.455 0.00 0.00 34.66 3.42
3232 3544 3.055094 TGGTCTCATTCACCTTTCTAGCC 60.055 47.826 0.00 0.00 34.66 3.93
3233 3545 3.055094 GGTCTCATTCACCTTTCTAGCCA 60.055 47.826 0.00 0.00 0.00 4.75
3234 3546 4.384647 GGTCTCATTCACCTTTCTAGCCAT 60.385 45.833 0.00 0.00 0.00 4.40
3235 3547 5.189180 GTCTCATTCACCTTTCTAGCCATT 58.811 41.667 0.00 0.00 0.00 3.16
3236 3548 5.065731 GTCTCATTCACCTTTCTAGCCATTG 59.934 44.000 0.00 0.00 0.00 2.82
3237 3549 4.272489 TCATTCACCTTTCTAGCCATTGG 58.728 43.478 0.00 0.00 0.00 3.16
3238 3550 4.018506 TCATTCACCTTTCTAGCCATTGGA 60.019 41.667 6.95 0.00 0.00 3.53
3239 3551 4.591321 TTCACCTTTCTAGCCATTGGAT 57.409 40.909 6.95 1.78 0.00 3.41
3240 3552 3.889815 TCACCTTTCTAGCCATTGGATG 58.110 45.455 6.95 0.00 0.00 3.51
3241 3553 3.266772 TCACCTTTCTAGCCATTGGATGT 59.733 43.478 6.95 0.00 0.00 3.06
3242 3554 3.379372 CACCTTTCTAGCCATTGGATGTG 59.621 47.826 6.95 0.00 0.00 3.21
3243 3555 3.266772 ACCTTTCTAGCCATTGGATGTGA 59.733 43.478 6.95 0.45 0.00 3.58
3244 3556 4.079558 ACCTTTCTAGCCATTGGATGTGAT 60.080 41.667 6.95 0.00 0.00 3.06
3245 3557 4.277672 CCTTTCTAGCCATTGGATGTGATG 59.722 45.833 6.95 0.79 0.00 3.07
3246 3558 3.497103 TCTAGCCATTGGATGTGATGG 57.503 47.619 6.95 0.00 44.52 3.51
3247 3559 2.779430 TCTAGCCATTGGATGTGATGGT 59.221 45.455 6.95 0.00 43.77 3.55
3248 3560 3.973305 TCTAGCCATTGGATGTGATGGTA 59.027 43.478 6.95 0.00 43.77 3.25
3249 3561 3.889859 AGCCATTGGATGTGATGGTAT 57.110 42.857 6.95 0.00 43.77 2.73
3250 3562 4.999469 AGCCATTGGATGTGATGGTATA 57.001 40.909 6.95 0.00 43.77 1.47
3251 3563 5.323382 AGCCATTGGATGTGATGGTATAA 57.677 39.130 6.95 0.00 43.77 0.98
3252 3564 5.319453 AGCCATTGGATGTGATGGTATAAG 58.681 41.667 6.95 0.00 43.77 1.73
3253 3565 5.073554 AGCCATTGGATGTGATGGTATAAGA 59.926 40.000 6.95 0.00 43.77 2.10
3254 3566 5.948162 GCCATTGGATGTGATGGTATAAGAT 59.052 40.000 6.95 0.00 43.77 2.40
3255 3567 6.127814 GCCATTGGATGTGATGGTATAAGATG 60.128 42.308 6.95 0.00 43.77 2.90
3256 3568 6.127814 CCATTGGATGTGATGGTATAAGATGC 60.128 42.308 0.00 0.00 38.38 3.91
3257 3569 4.568956 TGGATGTGATGGTATAAGATGCG 58.431 43.478 0.00 0.00 0.00 4.73
3258 3570 4.040339 TGGATGTGATGGTATAAGATGCGT 59.960 41.667 0.00 0.00 0.00 5.24
3259 3571 4.389992 GGATGTGATGGTATAAGATGCGTG 59.610 45.833 0.00 0.00 0.00 5.34
3260 3572 4.400529 TGTGATGGTATAAGATGCGTGT 57.599 40.909 0.00 0.00 0.00 4.49
3261 3573 4.119136 TGTGATGGTATAAGATGCGTGTG 58.881 43.478 0.00 0.00 0.00 3.82
3262 3574 4.119862 GTGATGGTATAAGATGCGTGTGT 58.880 43.478 0.00 0.00 0.00 3.72
3263 3575 4.025730 GTGATGGTATAAGATGCGTGTGTG 60.026 45.833 0.00 0.00 0.00 3.82
3264 3576 2.276201 TGGTATAAGATGCGTGTGTGC 58.724 47.619 0.00 0.00 0.00 4.57
3265 3577 2.093711 TGGTATAAGATGCGTGTGTGCT 60.094 45.455 0.00 0.00 35.36 4.40
3266 3578 2.285220 GGTATAAGATGCGTGTGTGCTG 59.715 50.000 0.00 0.00 35.36 4.41
3267 3579 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
3268 3580 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
3269 3581 1.230635 AAGATGCGTGTGTGCTGACC 61.231 55.000 0.00 0.00 35.36 4.02
3270 3582 1.669115 GATGCGTGTGTGCTGACCT 60.669 57.895 0.00 0.00 35.36 3.85
3271 3583 1.904852 GATGCGTGTGTGCTGACCTG 61.905 60.000 0.00 0.00 35.36 4.00
3272 3584 3.349006 GCGTGTGTGCTGACCTGG 61.349 66.667 0.00 0.00 0.00 4.45
3273 3585 2.666190 CGTGTGTGCTGACCTGGG 60.666 66.667 0.00 0.00 0.00 4.45
3274 3586 2.510906 GTGTGTGCTGACCTGGGT 59.489 61.111 0.00 0.00 0.00 4.51
3275 3587 1.152963 GTGTGTGCTGACCTGGGTT 60.153 57.895 0.00 0.00 0.00 4.11
3276 3588 1.152984 TGTGTGCTGACCTGGGTTG 60.153 57.895 0.00 0.00 0.00 3.77
3277 3589 1.152963 GTGTGCTGACCTGGGTTGT 60.153 57.895 0.00 0.00 0.00 3.32
3278 3590 0.107831 GTGTGCTGACCTGGGTTGTA 59.892 55.000 0.00 0.00 0.00 2.41
3279 3591 1.064003 TGTGCTGACCTGGGTTGTAT 58.936 50.000 0.00 0.00 0.00 2.29
3280 3592 2.027561 GTGTGCTGACCTGGGTTGTATA 60.028 50.000 0.00 0.00 0.00 1.47
3281 3593 2.843730 TGTGCTGACCTGGGTTGTATAT 59.156 45.455 0.00 0.00 0.00 0.86
3282 3594 3.206150 GTGCTGACCTGGGTTGTATATG 58.794 50.000 0.00 0.00 0.00 1.78
3283 3595 2.843730 TGCTGACCTGGGTTGTATATGT 59.156 45.455 0.00 0.00 0.00 2.29
3284 3596 3.265737 TGCTGACCTGGGTTGTATATGTT 59.734 43.478 0.00 0.00 0.00 2.71
3285 3597 3.877508 GCTGACCTGGGTTGTATATGTTC 59.122 47.826 0.00 0.00 0.00 3.18
3286 3598 4.384208 GCTGACCTGGGTTGTATATGTTCT 60.384 45.833 0.00 0.00 0.00 3.01
3287 3599 5.745227 CTGACCTGGGTTGTATATGTTCTT 58.255 41.667 0.00 0.00 0.00 2.52
3288 3600 5.496556 TGACCTGGGTTGTATATGTTCTTG 58.503 41.667 0.00 0.00 0.00 3.02
3289 3601 5.013704 TGACCTGGGTTGTATATGTTCTTGT 59.986 40.000 0.00 0.00 0.00 3.16
3290 3602 5.887754 ACCTGGGTTGTATATGTTCTTGTT 58.112 37.500 0.00 0.00 0.00 2.83
3291 3603 6.311735 ACCTGGGTTGTATATGTTCTTGTTT 58.688 36.000 0.00 0.00 0.00 2.83
3292 3604 6.780522 ACCTGGGTTGTATATGTTCTTGTTTT 59.219 34.615 0.00 0.00 0.00 2.43
3293 3605 7.039993 ACCTGGGTTGTATATGTTCTTGTTTTC 60.040 37.037 0.00 0.00 0.00 2.29
3294 3606 7.040062 CCTGGGTTGTATATGTTCTTGTTTTCA 60.040 37.037 0.00 0.00 0.00 2.69
3295 3607 8.239038 TGGGTTGTATATGTTCTTGTTTTCAA 57.761 30.769 0.00 0.00 38.21 2.69
3296 3608 8.696374 TGGGTTGTATATGTTCTTGTTTTCAAA 58.304 29.630 0.00 0.00 39.47 2.69
3297 3609 9.191995 GGGTTGTATATGTTCTTGTTTTCAAAG 57.808 33.333 0.00 0.00 39.47 2.77
3298 3610 9.744468 GGTTGTATATGTTCTTGTTTTCAAAGT 57.256 29.630 0.00 0.00 39.47 2.66
3305 3617 8.638685 ATGTTCTTGTTTTCAAAGTGAATGAG 57.361 30.769 0.00 0.00 39.47 2.90
3306 3618 7.825681 TGTTCTTGTTTTCAAAGTGAATGAGA 58.174 30.769 0.00 0.00 39.47 3.27
3307 3619 7.754924 TGTTCTTGTTTTCAAAGTGAATGAGAC 59.245 33.333 0.00 0.00 39.47 3.36
3308 3620 6.795399 TCTTGTTTTCAAAGTGAATGAGACC 58.205 36.000 0.00 0.00 39.47 3.85
3309 3621 6.376864 TCTTGTTTTCAAAGTGAATGAGACCA 59.623 34.615 0.00 0.00 39.47 4.02
3310 3622 6.522625 TGTTTTCAAAGTGAATGAGACCAA 57.477 33.333 0.00 0.00 36.11 3.67
3311 3623 6.929625 TGTTTTCAAAGTGAATGAGACCAAA 58.070 32.000 0.00 0.00 36.11 3.28
3312 3624 7.555087 TGTTTTCAAAGTGAATGAGACCAAAT 58.445 30.769 0.00 0.00 36.11 2.32
3313 3625 8.040132 TGTTTTCAAAGTGAATGAGACCAAATT 58.960 29.630 0.00 0.00 36.11 1.82
3314 3626 9.528018 GTTTTCAAAGTGAATGAGACCAAATTA 57.472 29.630 0.00 0.00 36.11 1.40
3315 3627 9.528018 TTTTCAAAGTGAATGAGACCAAATTAC 57.472 29.630 0.00 0.00 36.11 1.89
3316 3628 7.815840 TCAAAGTGAATGAGACCAAATTACA 57.184 32.000 0.00 0.00 0.00 2.41
3317 3629 8.408043 TCAAAGTGAATGAGACCAAATTACAT 57.592 30.769 0.00 0.00 0.00 2.29
3318 3630 8.859090 TCAAAGTGAATGAGACCAAATTACATT 58.141 29.630 0.00 0.00 34.55 2.71
3319 3631 9.480053 CAAAGTGAATGAGACCAAATTACATTT 57.520 29.630 0.00 0.00 32.50 2.32
3320 3632 9.696917 AAAGTGAATGAGACCAAATTACATTTC 57.303 29.630 0.00 0.00 32.50 2.17
3321 3633 8.408043 AGTGAATGAGACCAAATTACATTTCA 57.592 30.769 0.00 0.00 32.50 2.69
3322 3634 9.028284 AGTGAATGAGACCAAATTACATTTCAT 57.972 29.630 0.00 0.00 32.50 2.57
3323 3635 9.294030 GTGAATGAGACCAAATTACATTTCATC 57.706 33.333 0.00 0.00 32.50 2.92
3324 3636 9.246670 TGAATGAGACCAAATTACATTTCATCT 57.753 29.630 0.00 0.00 32.50 2.90
3340 3652 9.647918 ACATTTCATCTAGATGAGTTCTAGGTA 57.352 33.333 29.29 13.25 44.99 3.08
3341 3653 9.906660 CATTTCATCTAGATGAGTTCTAGGTAC 57.093 37.037 29.29 0.00 44.99 3.34
3342 3654 9.875708 ATTTCATCTAGATGAGTTCTAGGTACT 57.124 33.333 29.29 8.46 44.99 2.73
3343 3655 8.911918 TTCATCTAGATGAGTTCTAGGTACTC 57.088 38.462 29.29 15.11 44.99 2.59
3344 3656 7.455058 TCATCTAGATGAGTTCTAGGTACTCC 58.545 42.308 27.93 8.04 44.99 3.85
3345 3657 6.657541 CATCTAGATGAGTTCTAGGTACTCCC 59.342 46.154 25.78 12.05 44.99 4.30
3346 3658 7.475654 CATCTAGATGAGTTCTAGGTACTCCCT 60.476 44.444 25.78 16.34 44.99 4.20
3420 3732 4.796606 AGTCTTTGGATCCCAATGGTATG 58.203 43.478 9.90 0.00 43.55 2.39
3421 3733 4.230502 AGTCTTTGGATCCCAATGGTATGT 59.769 41.667 9.90 0.00 43.55 2.29
3423 3735 5.422012 GTCTTTGGATCCCAATGGTATGTTT 59.578 40.000 9.90 0.00 43.55 2.83
3424 3736 5.656416 TCTTTGGATCCCAATGGTATGTTTC 59.344 40.000 9.90 0.00 43.55 2.78
3464 3797 6.151480 TGCATGATGTGTATTGAGATTTGTGT 59.849 34.615 0.00 0.00 0.00 3.72
3473 3806 7.334421 GTGTATTGAGATTTGTGTGTACCTGAT 59.666 37.037 0.00 0.00 0.00 2.90
3474 3807 6.748333 ATTGAGATTTGTGTGTACCTGATG 57.252 37.500 0.00 0.00 0.00 3.07
3475 3808 4.578871 TGAGATTTGTGTGTACCTGATGG 58.421 43.478 0.00 0.00 39.83 3.51
3476 3809 3.347216 AGATTTGTGTGTACCTGATGGC 58.653 45.455 0.00 0.00 36.63 4.40
3477 3810 1.904287 TTTGTGTGTACCTGATGGCC 58.096 50.000 0.00 0.00 36.63 5.36
3478 3811 1.064003 TTGTGTGTACCTGATGGCCT 58.936 50.000 3.32 0.00 36.63 5.19
3479 3812 1.945580 TGTGTGTACCTGATGGCCTA 58.054 50.000 3.32 0.00 36.63 3.93
3480 3813 1.553248 TGTGTGTACCTGATGGCCTAC 59.447 52.381 3.32 0.00 36.63 3.18
3481 3814 1.553248 GTGTGTACCTGATGGCCTACA 59.447 52.381 3.32 0.00 36.63 2.74
3482 3815 1.831106 TGTGTACCTGATGGCCTACAG 59.169 52.381 18.29 18.29 36.63 2.74
3511 3844 9.820725 ATTGAATTTGTTTGAAATCAACTCTGA 57.179 25.926 0.00 0.00 35.28 3.27
3512 3845 8.633075 TGAATTTGTTTGAAATCAACTCTGAC 57.367 30.769 0.00 0.00 35.28 3.51
3513 3846 7.431960 TGAATTTGTTTGAAATCAACTCTGACG 59.568 33.333 0.00 0.00 35.28 4.35
3514 3847 6.429791 TTTGTTTGAAATCAACTCTGACGA 57.570 33.333 0.00 0.00 35.28 4.20
3515 3848 5.657470 TGTTTGAAATCAACTCTGACGAG 57.343 39.130 0.00 0.00 43.10 4.18
3516 3849 4.511454 TGTTTGAAATCAACTCTGACGAGG 59.489 41.667 0.00 0.00 41.71 4.63
3517 3850 4.336889 TTGAAATCAACTCTGACGAGGT 57.663 40.909 0.00 0.00 41.71 3.85
3518 3851 4.336889 TGAAATCAACTCTGACGAGGTT 57.663 40.909 0.00 0.00 41.71 3.50
3519 3852 4.703897 TGAAATCAACTCTGACGAGGTTT 58.296 39.130 0.00 0.00 41.71 3.27
3520 3853 4.750098 TGAAATCAACTCTGACGAGGTTTC 59.250 41.667 0.00 0.00 41.71 2.78
3521 3854 9.305248 TTTGAAATCAACTCTGACGAGGTTTCG 62.305 40.741 0.00 0.00 43.07 3.46
3580 3913 0.843309 TGCCAAGAGGAAGGAACACA 59.157 50.000 0.00 0.00 36.89 3.72
3581 3914 1.239347 GCCAAGAGGAAGGAACACAC 58.761 55.000 0.00 0.00 36.89 3.82
3582 3915 1.512926 CCAAGAGGAAGGAACACACG 58.487 55.000 0.00 0.00 36.89 4.49
3583 3916 1.202651 CCAAGAGGAAGGAACACACGT 60.203 52.381 0.00 0.00 36.89 4.49
3584 3917 2.135933 CAAGAGGAAGGAACACACGTC 58.864 52.381 0.00 0.00 0.00 4.34
3585 3918 0.680061 AGAGGAAGGAACACACGTCC 59.320 55.000 0.00 0.00 36.85 4.79
3586 3919 0.320508 GAGGAAGGAACACACGTCCC 60.321 60.000 0.00 0.00 37.22 4.46
3587 3920 0.763223 AGGAAGGAACACACGTCCCT 60.763 55.000 0.00 0.00 37.22 4.20
3594 3927 0.470456 AACACACGTCCCTACCAGGA 60.470 55.000 0.00 0.00 37.67 3.86
3597 3930 0.611340 ACACGTCCCTACCAGGAGAC 60.611 60.000 0.00 0.00 37.67 3.36
3601 3934 1.036481 GTCCCTACCAGGAGACGACC 61.036 65.000 0.00 0.00 37.67 4.79
3614 3947 1.587933 GACGACCTGTCTCGCTCCTT 61.588 60.000 0.00 0.00 44.58 3.36
3630 3963 2.599082 CTCCTTGTTTATGCGTCTCGAC 59.401 50.000 0.00 0.00 0.00 4.20
3633 3966 0.457166 TGTTTATGCGTCTCGACCGG 60.457 55.000 0.00 0.00 0.00 5.28
3683 4016 5.510430 GGAATCAACCCCTTCTGTTATTCT 58.490 41.667 0.00 0.00 0.00 2.40
3711 4044 4.911514 AAAAATGCTAAACACACGGACT 57.088 36.364 0.00 0.00 0.00 3.85
3713 4046 6.569179 AAAAATGCTAAACACACGGACTAT 57.431 33.333 0.00 0.00 0.00 2.12
3714 4047 6.569179 AAAATGCTAAACACACGGACTATT 57.431 33.333 0.00 0.00 0.00 1.73
3715 4048 7.675962 AAAATGCTAAACACACGGACTATTA 57.324 32.000 0.00 0.00 0.00 0.98
3716 4049 6.657836 AATGCTAAACACACGGACTATTAC 57.342 37.500 0.00 0.00 0.00 1.89
3717 4050 5.136816 TGCTAAACACACGGACTATTACA 57.863 39.130 0.00 0.00 0.00 2.41
3718 4051 5.165676 TGCTAAACACACGGACTATTACAG 58.834 41.667 0.00 0.00 0.00 2.74
3719 4052 4.565564 GCTAAACACACGGACTATTACAGG 59.434 45.833 0.00 0.00 0.00 4.00
3720 4053 2.667473 ACACACGGACTATTACAGGC 57.333 50.000 0.00 0.00 0.00 4.85
3721 4054 2.176889 ACACACGGACTATTACAGGCT 58.823 47.619 0.00 0.00 30.26 4.58
3722 4055 3.359033 ACACACGGACTATTACAGGCTA 58.641 45.455 0.00 0.00 30.26 3.93
3723 4056 3.958798 ACACACGGACTATTACAGGCTAT 59.041 43.478 0.00 0.00 30.26 2.97
3724 4057 4.404715 ACACACGGACTATTACAGGCTATT 59.595 41.667 0.00 0.00 30.26 1.73
3725 4058 5.595542 ACACACGGACTATTACAGGCTATTA 59.404 40.000 0.00 0.00 30.26 0.98
3726 4059 6.267014 ACACACGGACTATTACAGGCTATTAT 59.733 38.462 0.00 0.00 30.26 1.28
3727 4060 6.586463 CACACGGACTATTACAGGCTATTATG 59.414 42.308 0.00 0.00 30.26 1.90
3728 4061 6.100004 CACGGACTATTACAGGCTATTATGG 58.900 44.000 0.00 0.00 30.26 2.74
3729 4062 6.014647 ACGGACTATTACAGGCTATTATGGA 58.985 40.000 0.00 0.00 30.26 3.41
3730 4063 6.071503 ACGGACTATTACAGGCTATTATGGAC 60.072 42.308 0.00 0.00 30.26 4.02
3731 4064 6.153000 CGGACTATTACAGGCTATTATGGACT 59.847 42.308 0.00 0.00 30.26 3.85
3732 4065 7.548967 GGACTATTACAGGCTATTATGGACTC 58.451 42.308 0.00 0.00 30.26 3.36
3733 4066 7.397761 GGACTATTACAGGCTATTATGGACTCT 59.602 40.741 0.00 0.00 30.26 3.24
3734 4067 8.728596 ACTATTACAGGCTATTATGGACTCTT 57.271 34.615 0.00 0.00 0.00 2.85
3735 4068 9.160412 ACTATTACAGGCTATTATGGACTCTTT 57.840 33.333 0.00 0.00 0.00 2.52
3736 4069 9.646427 CTATTACAGGCTATTATGGACTCTTTC 57.354 37.037 0.00 0.00 0.00 2.62
3737 4070 5.297569 ACAGGCTATTATGGACTCTTTCC 57.702 43.478 0.00 0.00 46.13 3.13
3753 4086 7.808381 GGACTCTTTCCAACTAATTAAACTTGC 59.192 37.037 0.00 0.00 45.10 4.01
3754 4087 7.658261 ACTCTTTCCAACTAATTAAACTTGCC 58.342 34.615 0.00 0.00 0.00 4.52
3755 4088 6.988522 TCTTTCCAACTAATTAAACTTGCCC 58.011 36.000 0.00 0.00 0.00 5.36
3756 4089 5.731957 TTCCAACTAATTAAACTTGCCCC 57.268 39.130 0.00 0.00 0.00 5.80
3757 4090 4.090819 TCCAACTAATTAAACTTGCCCCC 58.909 43.478 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.664798 TGACATTGTGCAATTATTGACTAGTAC 58.335 33.333 9.36 0.00 0.00 2.73
16 17 7.604549 TCATTGACATTGTGCAATTATTGACT 58.395 30.769 9.36 0.00 32.74 3.41
111 112 2.027192 GGTTAGATGGAGAGGCAACACA 60.027 50.000 0.00 0.00 41.41 3.72
123 124 9.119418 TCAAACATATATGTGTTGGTTAGATGG 57.881 33.333 18.94 0.00 41.22 3.51
259 260 9.793252 GTTGCACAGAGTGAAAATTCATATATT 57.207 29.630 0.58 0.00 39.73 1.28
260 261 9.182214 AGTTGCACAGAGTGAAAATTCATATAT 57.818 29.630 0.58 0.00 39.73 0.86
278 279 1.246649 CCCTGCATACAAGTTGCACA 58.753 50.000 1.81 0.00 44.73 4.57
301 302 2.427095 ACAGCTGATTAAAAATCCCCGC 59.573 45.455 23.35 0.00 0.00 6.13
306 307 7.016361 ACGGATACACAGCTGATTAAAAATC 57.984 36.000 23.35 12.01 0.00 2.17
308 309 6.811253 AACGGATACACAGCTGATTAAAAA 57.189 33.333 23.35 0.00 0.00 1.94
309 310 7.324935 TCTAACGGATACACAGCTGATTAAAA 58.675 34.615 23.35 0.00 0.00 1.52
331 336 4.020039 TGTTCGGCTGGAAGGTATTTTCTA 60.020 41.667 0.00 0.00 34.69 2.10
344 360 1.608590 ACAAATGACTTGTTCGGCTGG 59.391 47.619 0.00 0.00 46.49 4.85
359 375 5.152623 TGAATCCTCTCGAGTTGACAAAT 57.847 39.130 13.13 0.00 0.00 2.32
371 483 9.421806 CTGATGAAGTATACAATGAATCCTCTC 57.578 37.037 5.50 0.00 0.00 3.20
375 487 6.619446 GCGCTGATGAAGTATACAATGAATCC 60.619 42.308 5.50 0.00 0.00 3.01
403 519 8.865590 AACATAAGTTTGTTGTGACCAATAAC 57.134 30.769 3.59 0.00 38.37 1.89
447 565 1.065199 AGCATGATGATGACCAACCGT 60.065 47.619 0.00 0.00 0.00 4.83
462 580 1.236616 TTCCAACCGTCAGCAGCATG 61.237 55.000 0.00 0.00 40.87 4.06
507 625 4.141287 CCAGTGGTGTTTGTTTCCATCTA 58.859 43.478 0.00 0.00 33.68 1.98
511 629 2.223803 ACCAGTGGTGTTTGTTTCCA 57.776 45.000 15.86 0.00 32.98 3.53
548 666 5.723672 TGACTAGTTCTTGAGACGGAAAT 57.276 39.130 0.00 0.00 0.00 2.17
644 762 3.140519 TCCACTAGTAGGAGGAAGGATCC 59.859 52.174 2.48 2.48 46.98 3.36
658 787 5.067413 CGTATGTATCCACTGTTCCACTAGT 59.933 44.000 0.00 0.00 0.00 2.57
681 810 2.095263 AGACAATTGCGTCCAAAATCCG 60.095 45.455 5.05 0.00 36.52 4.18
734 863 4.778143 GTGCCACCCACGCCCTAG 62.778 72.222 0.00 0.00 34.22 3.02
769 898 5.988561 ACACAACCGAATTTTATTGCACATT 59.011 32.000 0.00 0.00 0.00 2.71
775 904 5.632764 TGATGCACACAACCGAATTTTATTG 59.367 36.000 0.00 0.00 0.00 1.90
803 932 0.759346 ATATCCCGGTCTCTGCAACC 59.241 55.000 0.00 0.00 0.00 3.77
813 942 0.178873 AGGTGGGCATATATCCCGGT 60.179 55.000 0.00 0.00 46.92 5.28
819 948 7.364673 GGTTTCTTTGAAAAGGTGGGCATATAT 60.365 37.037 3.08 0.00 36.67 0.86
820 949 6.071051 GGTTTCTTTGAAAAGGTGGGCATATA 60.071 38.462 3.08 0.00 36.67 0.86
821 950 5.279960 GGTTTCTTTGAAAAGGTGGGCATAT 60.280 40.000 3.08 0.00 36.67 1.78
822 951 4.039852 GGTTTCTTTGAAAAGGTGGGCATA 59.960 41.667 3.08 0.00 36.67 3.14
835 964 7.106439 TGAAGCAATTTACAGGTTTCTTTGA 57.894 32.000 0.00 0.00 0.00 2.69
836 965 6.980397 ACTGAAGCAATTTACAGGTTTCTTTG 59.020 34.615 0.00 0.00 35.08 2.77
837 966 7.112452 ACTGAAGCAATTTACAGGTTTCTTT 57.888 32.000 0.00 0.00 35.08 2.52
852 981 5.204409 AGCATGAATGAAAACTGAAGCAA 57.796 34.783 0.00 0.00 0.00 3.91
878 1027 5.240183 TCCGTCCTCGTAGTCCATAAATAAG 59.760 44.000 0.00 0.00 35.01 1.73
886 1035 1.742880 CGTCCGTCCTCGTAGTCCA 60.743 63.158 0.00 0.00 35.01 4.02
887 1036 2.467826 CCGTCCGTCCTCGTAGTCC 61.468 68.421 0.00 0.00 35.01 3.85
898 1047 2.529454 TAATGCATGTGCCCGTCCGT 62.529 55.000 0.00 0.00 41.18 4.69
899 1048 1.165907 ATAATGCATGTGCCCGTCCG 61.166 55.000 0.00 0.00 41.18 4.79
946 1095 6.442564 TCTTATAAAGCAGAGGTTGTAAGGGA 59.557 38.462 11.20 0.00 30.41 4.20
952 1101 6.655425 GGAAGTTCTTATAAAGCAGAGGTTGT 59.345 38.462 2.25 0.00 0.00 3.32
982 1131 3.878086 AATGGTTGCGTATATGAAGCG 57.122 42.857 0.00 0.00 34.91 4.68
1002 1151 6.925165 AGCTAGCGTTAACTTAAGTTTGTGTA 59.075 34.615 25.07 4.93 39.31 2.90
1003 1152 5.756833 AGCTAGCGTTAACTTAAGTTTGTGT 59.243 36.000 25.07 9.92 39.31 3.72
1004 1153 6.224420 AGCTAGCGTTAACTTAAGTTTGTG 57.776 37.500 25.07 15.43 39.31 3.33
1027 1218 3.072330 TGGTCACAGGACTGAAAATGCTA 59.928 43.478 6.29 0.00 43.77 3.49
1028 1219 2.158623 TGGTCACAGGACTGAAAATGCT 60.159 45.455 6.29 0.00 43.77 3.79
1029 1220 2.030805 GTGGTCACAGGACTGAAAATGC 60.031 50.000 6.29 0.00 43.77 3.56
1030 1221 2.554032 GGTGGTCACAGGACTGAAAATG 59.446 50.000 6.29 0.00 43.77 2.32
1041 1232 1.742880 CGAGCCATGGTGGTCACAG 60.743 63.158 14.67 0.00 40.46 3.66
1042 1233 2.347114 CGAGCCATGGTGGTCACA 59.653 61.111 14.67 0.00 40.46 3.58
1056 1247 2.359107 TTCTTGCTGCTGGCCGAG 60.359 61.111 0.00 0.00 40.92 4.63
1100 1291 2.820479 GAGCAGGAGCAGCAGCAG 60.820 66.667 3.17 0.00 45.49 4.24
1125 1316 3.052082 CCACAGACAAGGCAGGCG 61.052 66.667 0.00 0.00 0.00 5.52
1152 1343 2.360767 CGGACGATTACCCCCACCA 61.361 63.158 0.00 0.00 0.00 4.17
1156 1347 2.420466 GAGCGGACGATTACCCCC 59.580 66.667 0.00 0.00 0.00 5.40
1178 1369 1.869767 GCTCGCGATCCTTTTCATCAT 59.130 47.619 10.36 0.00 0.00 2.45
1180 1371 1.290203 TGCTCGCGATCCTTTTCATC 58.710 50.000 10.36 0.00 0.00 2.92
1325 1516 2.319890 AAAGTCTGTTGCCCGACGGT 62.320 55.000 13.94 0.00 35.38 4.83
1333 1524 1.869690 GCCGGAGAAAGTCTGTTGC 59.130 57.895 5.05 0.00 0.00 4.17
1342 1533 3.296836 TCGACCACGCCGGAGAAA 61.297 61.111 13.83 0.00 38.63 2.52
1365 1556 1.403679 TGCACCAGAAAAAGTCGTTGG 59.596 47.619 0.00 0.00 35.07 3.77
1480 1672 0.952497 CAGCTGCTGGTTGTGTCGAT 60.952 55.000 21.71 0.00 0.00 3.59
1491 1683 3.494336 GCGTACAGGCAGCTGCTG 61.494 66.667 35.82 30.38 41.70 4.41
1520 1712 1.589993 CTGTAGCTGCCATCGTCGG 60.590 63.158 0.00 0.00 0.00 4.79
1640 1832 2.819595 CAATGGCACCGTCCCTCG 60.820 66.667 0.00 0.00 39.52 4.63
1643 1835 3.879180 AACCCAATGGCACCGTCCC 62.879 63.158 0.00 0.00 33.59 4.46
1650 1842 1.186917 CCTTGCTGAACCCAATGGCA 61.187 55.000 0.00 0.00 33.59 4.92
1695 1887 2.119801 ATCAGAACCTGGTGATGTGC 57.880 50.000 0.00 0.00 32.01 4.57
1739 1933 7.245419 TGTCACATAATAATGATGACGTTGG 57.755 36.000 0.00 0.00 41.72 3.77
1886 2082 6.769512 ACTAACTGGATTGAAGCTCTTGTAA 58.230 36.000 0.00 0.00 0.00 2.41
1949 2238 7.201635 GCACAAATCATGATTCAAAATTACCCC 60.202 37.037 20.95 0.00 0.00 4.95
2080 2369 0.464373 CAATGGTGTGGAGCGGCTAT 60.464 55.000 0.60 0.00 0.00 2.97
2112 2401 4.338879 ACGTAGTACAAGTCCTGGTACAT 58.661 43.478 13.16 3.13 41.94 2.29
2333 2622 3.368013 CGTAGCACAGGTCCAACTCATTA 60.368 47.826 0.00 0.00 0.00 1.90
2674 2984 5.395103 GGATTGAGAGCTGACACACTATCTT 60.395 44.000 0.00 0.00 0.00 2.40
2690 3000 5.190528 AGCATTTAAGTCAGGAGGATTGAGA 59.809 40.000 0.00 0.00 0.00 3.27
2691 3001 5.435291 AGCATTTAAGTCAGGAGGATTGAG 58.565 41.667 0.00 0.00 0.00 3.02
2718 3028 1.076727 GCTAAGGGCCCCAACACTT 59.923 57.895 21.43 7.68 34.27 3.16
2725 3035 2.246469 GTACTACTAGCTAAGGGCCCC 58.754 57.143 21.43 1.95 43.05 5.80
2728 3038 5.811100 CAGTTTTGTACTACTAGCTAAGGGC 59.189 44.000 0.00 0.00 36.86 5.19
2756 3066 5.934921 ACACAACCTTAATTAGCTTTACGC 58.065 37.500 0.00 0.00 39.57 4.42
2757 3067 7.577979 TCAACACAACCTTAATTAGCTTTACG 58.422 34.615 0.00 0.00 0.00 3.18
2760 3070 9.515226 TCTATCAACACAACCTTAATTAGCTTT 57.485 29.630 0.00 0.00 0.00 3.51
2761 3071 9.515226 TTCTATCAACACAACCTTAATTAGCTT 57.485 29.630 0.00 0.00 0.00 3.74
2762 3072 9.515226 TTTCTATCAACACAACCTTAATTAGCT 57.485 29.630 0.00 0.00 0.00 3.32
2804 3114 2.045340 GGCCGGCCTAAGCAAGAA 60.045 61.111 38.76 0.00 42.56 2.52
2808 3118 2.491770 TTTCATGGCCGGCCTAAGCA 62.492 55.000 43.34 25.97 42.56 3.91
2809 3119 1.728490 CTTTCATGGCCGGCCTAAGC 61.728 60.000 43.34 19.89 36.94 3.09
2814 3124 0.393808 TCTTACTTTCATGGCCGGCC 60.394 55.000 39.40 39.40 0.00 6.13
2815 3125 0.733150 GTCTTACTTTCATGGCCGGC 59.267 55.000 21.18 21.18 0.00 6.13
2816 3126 2.403252 AGTCTTACTTTCATGGCCGG 57.597 50.000 0.00 0.00 0.00 6.13
2817 3127 3.118738 ACCTAGTCTTACTTTCATGGCCG 60.119 47.826 0.00 0.00 0.00 6.13
2826 3136 4.332428 AAACACGCACCTAGTCTTACTT 57.668 40.909 0.00 0.00 0.00 2.24
2838 3148 2.475864 TCAACCATACGTAAACACGCAC 59.524 45.455 0.00 0.00 36.44 5.34
2975 3287 1.380380 CTTGGATTGGTGGGGAGGC 60.380 63.158 0.00 0.00 0.00 4.70
2989 3301 5.129368 TCCATATCCCCTCTTTTTCTTGG 57.871 43.478 0.00 0.00 0.00 3.61
3061 3373 9.321562 ACCTGCATCAAATAATGAATTCATTTC 57.678 29.630 32.57 15.08 43.48 2.17
3075 3387 1.200716 CTGCGACAACCTGCATCAAAT 59.799 47.619 0.00 0.00 40.89 2.32
3077 3389 0.534877 ACTGCGACAACCTGCATCAA 60.535 50.000 0.00 0.00 40.89 2.57
3084 3396 0.753262 AGTGAAGACTGCGACAACCT 59.247 50.000 0.00 0.00 0.00 3.50
3089 3401 3.368236 GGTCAAATAGTGAAGACTGCGAC 59.632 47.826 0.00 0.00 38.23 5.19
3092 3404 4.377431 CGTTGGTCAAATAGTGAAGACTGC 60.377 45.833 0.00 0.00 38.23 4.40
3095 3407 4.389077 CCTCGTTGGTCAAATAGTGAAGAC 59.611 45.833 0.00 0.00 38.23 3.01
3114 3426 4.824515 ACTCGCCCCTCTCCCTCG 62.825 72.222 0.00 0.00 0.00 4.63
3123 3435 1.971695 CTTTGTCCCAACTCGCCCC 60.972 63.158 0.00 0.00 0.00 5.80
3199 3511 9.566432 AAGGTGAATGAGACCAAATTATATCTC 57.434 33.333 0.00 6.03 38.46 2.75
3200 3512 9.927081 AAAGGTGAATGAGACCAAATTATATCT 57.073 29.630 0.00 0.00 35.76 1.98
3202 3514 9.927081 AGAAAGGTGAATGAGACCAAATTATAT 57.073 29.630 0.00 0.00 35.76 0.86
3204 3516 9.401058 CTAGAAAGGTGAATGAGACCAAATTAT 57.599 33.333 0.00 0.00 35.76 1.28
3205 3517 7.336931 GCTAGAAAGGTGAATGAGACCAAATTA 59.663 37.037 0.00 0.00 35.76 1.40
3206 3518 6.151817 GCTAGAAAGGTGAATGAGACCAAATT 59.848 38.462 0.00 0.00 35.76 1.82
3207 3519 5.649831 GCTAGAAAGGTGAATGAGACCAAAT 59.350 40.000 0.00 0.00 35.76 2.32
3208 3520 5.003804 GCTAGAAAGGTGAATGAGACCAAA 58.996 41.667 0.00 0.00 35.76 3.28
3209 3521 4.565652 GGCTAGAAAGGTGAATGAGACCAA 60.566 45.833 0.00 0.00 35.76 3.67
3210 3522 3.055094 GGCTAGAAAGGTGAATGAGACCA 60.055 47.826 0.00 0.00 35.76 4.02
3211 3523 3.055094 TGGCTAGAAAGGTGAATGAGACC 60.055 47.826 0.00 0.00 0.00 3.85
3212 3524 4.207891 TGGCTAGAAAGGTGAATGAGAC 57.792 45.455 0.00 0.00 0.00 3.36
3213 3525 5.188434 CAATGGCTAGAAAGGTGAATGAGA 58.812 41.667 0.00 0.00 0.00 3.27
3214 3526 4.337555 CCAATGGCTAGAAAGGTGAATGAG 59.662 45.833 0.00 0.00 0.00 2.90
3215 3527 4.018506 TCCAATGGCTAGAAAGGTGAATGA 60.019 41.667 0.00 0.00 0.00 2.57
3216 3528 4.272489 TCCAATGGCTAGAAAGGTGAATG 58.728 43.478 0.00 0.00 0.00 2.67
3217 3529 4.591321 TCCAATGGCTAGAAAGGTGAAT 57.409 40.909 0.00 0.00 0.00 2.57
3218 3530 4.263905 ACATCCAATGGCTAGAAAGGTGAA 60.264 41.667 0.00 0.00 33.60 3.18
3219 3531 3.266772 ACATCCAATGGCTAGAAAGGTGA 59.733 43.478 0.00 0.00 33.60 4.02
3220 3532 3.379372 CACATCCAATGGCTAGAAAGGTG 59.621 47.826 0.00 0.00 33.60 4.00
3221 3533 3.266772 TCACATCCAATGGCTAGAAAGGT 59.733 43.478 0.00 0.00 33.60 3.50
3222 3534 3.889815 TCACATCCAATGGCTAGAAAGG 58.110 45.455 0.00 0.00 33.60 3.11
3223 3535 4.277672 CCATCACATCCAATGGCTAGAAAG 59.722 45.833 0.00 0.00 36.31 2.62
3224 3536 4.209538 CCATCACATCCAATGGCTAGAAA 58.790 43.478 0.00 0.00 36.31 2.52
3225 3537 3.202818 ACCATCACATCCAATGGCTAGAA 59.797 43.478 0.00 0.00 45.28 2.10
3226 3538 2.779430 ACCATCACATCCAATGGCTAGA 59.221 45.455 0.00 0.00 45.28 2.43
3227 3539 3.219176 ACCATCACATCCAATGGCTAG 57.781 47.619 0.00 0.00 45.28 3.42
3228 3540 4.999469 ATACCATCACATCCAATGGCTA 57.001 40.909 0.00 0.00 45.28 3.93
3229 3541 3.889859 ATACCATCACATCCAATGGCT 57.110 42.857 0.00 0.00 45.28 4.75
3230 3542 5.316167 TCTTATACCATCACATCCAATGGC 58.684 41.667 0.00 0.00 45.28 4.40
3231 3543 6.127814 GCATCTTATACCATCACATCCAATGG 60.128 42.308 0.00 0.00 46.53 3.16
3232 3544 6.402875 CGCATCTTATACCATCACATCCAATG 60.403 42.308 0.00 0.00 0.00 2.82
3233 3545 5.645067 CGCATCTTATACCATCACATCCAAT 59.355 40.000 0.00 0.00 0.00 3.16
3234 3546 4.996758 CGCATCTTATACCATCACATCCAA 59.003 41.667 0.00 0.00 0.00 3.53
3235 3547 4.040339 ACGCATCTTATACCATCACATCCA 59.960 41.667 0.00 0.00 0.00 3.41
3236 3548 4.389992 CACGCATCTTATACCATCACATCC 59.610 45.833 0.00 0.00 0.00 3.51
3237 3549 4.991056 ACACGCATCTTATACCATCACATC 59.009 41.667 0.00 0.00 0.00 3.06
3238 3550 4.751600 CACACGCATCTTATACCATCACAT 59.248 41.667 0.00 0.00 0.00 3.21
3239 3551 4.119136 CACACGCATCTTATACCATCACA 58.881 43.478 0.00 0.00 0.00 3.58
3240 3552 4.025730 CACACACGCATCTTATACCATCAC 60.026 45.833 0.00 0.00 0.00 3.06
3241 3553 4.119136 CACACACGCATCTTATACCATCA 58.881 43.478 0.00 0.00 0.00 3.07
3242 3554 3.059597 GCACACACGCATCTTATACCATC 60.060 47.826 0.00 0.00 0.00 3.51
3243 3555 2.872245 GCACACACGCATCTTATACCAT 59.128 45.455 0.00 0.00 0.00 3.55
3244 3556 2.093711 AGCACACACGCATCTTATACCA 60.094 45.455 0.00 0.00 0.00 3.25
3245 3557 2.285220 CAGCACACACGCATCTTATACC 59.715 50.000 0.00 0.00 0.00 2.73
3246 3558 3.000322 GTCAGCACACACGCATCTTATAC 60.000 47.826 0.00 0.00 0.00 1.47
3247 3559 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
3248 3560 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
3249 3561 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
3250 3562 1.230635 GGTCAGCACACACGCATCTT 61.231 55.000 0.00 0.00 0.00 2.40
3251 3563 1.669115 GGTCAGCACACACGCATCT 60.669 57.895 0.00 0.00 0.00 2.90
3252 3564 1.669115 AGGTCAGCACACACGCATC 60.669 57.895 0.00 0.00 0.00 3.91
3253 3565 1.962822 CAGGTCAGCACACACGCAT 60.963 57.895 0.00 0.00 0.00 4.73
3254 3566 2.588596 CAGGTCAGCACACACGCA 60.589 61.111 0.00 0.00 0.00 5.24
3255 3567 3.349006 CCAGGTCAGCACACACGC 61.349 66.667 0.00 0.00 0.00 5.34
3256 3568 2.666190 CCCAGGTCAGCACACACG 60.666 66.667 0.00 0.00 0.00 4.49
3257 3569 1.152963 AACCCAGGTCAGCACACAC 60.153 57.895 0.00 0.00 0.00 3.82
3258 3570 1.152984 CAACCCAGGTCAGCACACA 60.153 57.895 0.00 0.00 0.00 3.72
3259 3571 0.107831 TACAACCCAGGTCAGCACAC 59.892 55.000 0.00 0.00 0.00 3.82
3260 3572 1.064003 ATACAACCCAGGTCAGCACA 58.936 50.000 0.00 0.00 0.00 4.57
3261 3573 3.206150 CATATACAACCCAGGTCAGCAC 58.794 50.000 0.00 0.00 0.00 4.40
3262 3574 2.843730 ACATATACAACCCAGGTCAGCA 59.156 45.455 0.00 0.00 0.00 4.41
3263 3575 3.560636 ACATATACAACCCAGGTCAGC 57.439 47.619 0.00 0.00 0.00 4.26
3264 3576 5.359194 AGAACATATACAACCCAGGTCAG 57.641 43.478 0.00 0.00 0.00 3.51
3265 3577 5.013704 ACAAGAACATATACAACCCAGGTCA 59.986 40.000 0.00 0.00 0.00 4.02
3266 3578 5.497474 ACAAGAACATATACAACCCAGGTC 58.503 41.667 0.00 0.00 0.00 3.85
3267 3579 5.514500 ACAAGAACATATACAACCCAGGT 57.486 39.130 0.00 0.00 0.00 4.00
3268 3580 6.834168 AAACAAGAACATATACAACCCAGG 57.166 37.500 0.00 0.00 0.00 4.45
3269 3581 7.881142 TGAAAACAAGAACATATACAACCCAG 58.119 34.615 0.00 0.00 0.00 4.45
3270 3582 7.825331 TGAAAACAAGAACATATACAACCCA 57.175 32.000 0.00 0.00 0.00 4.51
3271 3583 9.191995 CTTTGAAAACAAGAACATATACAACCC 57.808 33.333 0.00 0.00 0.00 4.11
3272 3584 9.744468 ACTTTGAAAACAAGAACATATACAACC 57.256 29.630 0.00 0.00 0.00 3.77
3279 3591 9.734620 CTCATTCACTTTGAAAACAAGAACATA 57.265 29.630 0.00 0.00 40.12 2.29
3280 3592 8.469200 TCTCATTCACTTTGAAAACAAGAACAT 58.531 29.630 0.00 0.00 40.12 2.71
3281 3593 7.754924 GTCTCATTCACTTTGAAAACAAGAACA 59.245 33.333 0.00 0.00 40.12 3.18
3282 3594 7.220875 GGTCTCATTCACTTTGAAAACAAGAAC 59.779 37.037 0.00 0.00 40.12 3.01
3283 3595 7.093988 TGGTCTCATTCACTTTGAAAACAAGAA 60.094 33.333 0.00 0.00 40.12 2.52
3284 3596 6.376864 TGGTCTCATTCACTTTGAAAACAAGA 59.623 34.615 0.00 0.00 40.12 3.02
3285 3597 6.563422 TGGTCTCATTCACTTTGAAAACAAG 58.437 36.000 0.00 0.00 40.12 3.16
3286 3598 6.522625 TGGTCTCATTCACTTTGAAAACAA 57.477 33.333 0.00 0.00 40.12 2.83
3287 3599 6.522625 TTGGTCTCATTCACTTTGAAAACA 57.477 33.333 0.00 0.00 40.12 2.83
3288 3600 8.424274 AATTTGGTCTCATTCACTTTGAAAAC 57.576 30.769 0.00 0.00 40.12 2.43
3289 3601 9.528018 GTAATTTGGTCTCATTCACTTTGAAAA 57.472 29.630 0.00 0.00 40.12 2.29
3290 3602 8.690884 TGTAATTTGGTCTCATTCACTTTGAAA 58.309 29.630 0.00 0.00 40.12 2.69
3291 3603 8.231692 TGTAATTTGGTCTCATTCACTTTGAA 57.768 30.769 0.00 0.00 41.09 2.69
3292 3604 7.815840 TGTAATTTGGTCTCATTCACTTTGA 57.184 32.000 0.00 0.00 0.00 2.69
3293 3605 9.480053 AAATGTAATTTGGTCTCATTCACTTTG 57.520 29.630 0.00 0.00 46.55 2.77
3337 3649 5.149239 AGGCTTTTCTATCTAGGGAGTACC 58.851 45.833 0.00 0.00 40.67 3.34
3338 3650 7.005902 AGTAGGCTTTTCTATCTAGGGAGTAC 58.994 42.308 0.00 0.00 0.00 2.73
3339 3651 7.164233 AGTAGGCTTTTCTATCTAGGGAGTA 57.836 40.000 0.00 0.00 0.00 2.59
3340 3652 6.033203 AGTAGGCTTTTCTATCTAGGGAGT 57.967 41.667 0.00 0.00 0.00 3.85
3341 3653 6.661805 CCTAGTAGGCTTTTCTATCTAGGGAG 59.338 46.154 2.46 0.00 37.40 4.30
3342 3654 6.468945 CCCTAGTAGGCTTTTCTATCTAGGGA 60.469 46.154 22.48 0.00 46.92 4.20
3343 3655 5.717654 CCCTAGTAGGCTTTTCTATCTAGGG 59.282 48.000 11.08 16.53 43.93 3.53
3344 3656 6.553857 TCCCTAGTAGGCTTTTCTATCTAGG 58.446 44.000 11.08 0.00 38.72 3.02
3345 3657 7.891183 TCATCCCTAGTAGGCTTTTCTATCTAG 59.109 40.741 11.08 0.00 32.73 2.43
3346 3658 7.766628 TCATCCCTAGTAGGCTTTTCTATCTA 58.233 38.462 11.08 0.00 32.73 1.98
3347 3659 6.625267 TCATCCCTAGTAGGCTTTTCTATCT 58.375 40.000 11.08 0.00 32.73 1.98
3348 3660 6.919775 TCATCCCTAGTAGGCTTTTCTATC 57.080 41.667 11.08 0.00 32.73 2.08
3349 3661 6.043358 GGTTCATCCCTAGTAGGCTTTTCTAT 59.957 42.308 11.08 0.00 32.73 1.98
3350 3662 5.365895 GGTTCATCCCTAGTAGGCTTTTCTA 59.634 44.000 11.08 0.00 32.73 2.10
3351 3663 4.164413 GGTTCATCCCTAGTAGGCTTTTCT 59.836 45.833 11.08 0.00 32.73 2.52
3352 3664 4.452825 GGTTCATCCCTAGTAGGCTTTTC 58.547 47.826 11.08 0.00 32.73 2.29
3353 3665 4.505324 GGTTCATCCCTAGTAGGCTTTT 57.495 45.455 11.08 0.00 32.73 2.27
3437 3770 7.704899 CACAAATCTCAATACACATCATGCAAT 59.295 33.333 0.00 0.00 0.00 3.56
3438 3771 7.030768 CACAAATCTCAATACACATCATGCAA 58.969 34.615 0.00 0.00 0.00 4.08
3464 3797 2.247699 ACTGTAGGCCATCAGGTACA 57.752 50.000 24.18 13.97 37.19 2.90
3473 3806 6.909550 AACAAATTCAATAACTGTAGGCCA 57.090 33.333 5.01 0.00 0.00 5.36
3474 3807 7.375053 TCAAACAAATTCAATAACTGTAGGCC 58.625 34.615 0.00 0.00 0.00 5.19
3475 3808 8.810652 TTCAAACAAATTCAATAACTGTAGGC 57.189 30.769 0.00 0.00 0.00 3.93
3526 3859 7.725844 ACTCCATATGAAACAAGTCCTCTTTTT 59.274 33.333 3.65 0.00 0.00 1.94
3527 3860 7.234355 ACTCCATATGAAACAAGTCCTCTTTT 58.766 34.615 3.65 0.00 0.00 2.27
3528 3861 6.784031 ACTCCATATGAAACAAGTCCTCTTT 58.216 36.000 3.65 0.00 0.00 2.52
3529 3862 6.380079 ACTCCATATGAAACAAGTCCTCTT 57.620 37.500 3.65 0.00 0.00 2.85
3530 3863 6.670027 AGTACTCCATATGAAACAAGTCCTCT 59.330 38.462 3.65 0.00 0.00 3.69
3531 3864 6.879400 AGTACTCCATATGAAACAAGTCCTC 58.121 40.000 3.65 0.00 0.00 3.71
3580 3913 1.378250 CGTCTCCTGGTAGGGACGT 60.378 63.158 20.74 0.00 45.48 4.34
3581 3914 3.510846 CGTCTCCTGGTAGGGACG 58.489 66.667 17.82 17.82 45.39 4.79
3582 3915 1.036481 GGTCGTCTCCTGGTAGGGAC 61.036 65.000 0.00 0.00 35.59 4.46
3583 3916 1.212934 AGGTCGTCTCCTGGTAGGGA 61.213 60.000 0.00 0.00 35.59 4.20
3584 3917 1.306970 AGGTCGTCTCCTGGTAGGG 59.693 63.158 0.00 0.00 35.59 3.53
3597 3930 1.153939 CAAGGAGCGAGACAGGTCG 60.154 63.158 0.00 0.00 43.08 4.79
3601 3934 2.349886 GCATAAACAAGGAGCGAGACAG 59.650 50.000 0.00 0.00 0.00 3.51
3614 3947 0.457166 CCGGTCGAGACGCATAAACA 60.457 55.000 0.00 0.00 0.00 2.83
3630 3963 1.762522 ATAGAGCTGGATGCCACCGG 61.763 60.000 0.00 0.00 44.23 5.28
3633 3966 1.133976 ACCAATAGAGCTGGATGCCAC 60.134 52.381 0.00 0.00 44.23 5.01
3700 4033 2.565834 AGCCTGTAATAGTCCGTGTGTT 59.434 45.455 0.00 0.00 0.00 3.32
3701 4034 2.176889 AGCCTGTAATAGTCCGTGTGT 58.823 47.619 0.00 0.00 0.00 3.72
3702 4035 2.961526 AGCCTGTAATAGTCCGTGTG 57.038 50.000 0.00 0.00 0.00 3.82
3703 4036 6.295123 CCATAATAGCCTGTAATAGTCCGTGT 60.295 42.308 0.00 0.00 0.00 4.49
3704 4037 6.071560 TCCATAATAGCCTGTAATAGTCCGTG 60.072 42.308 0.00 0.00 0.00 4.94
3705 4038 6.014647 TCCATAATAGCCTGTAATAGTCCGT 58.985 40.000 0.00 0.00 0.00 4.69
3706 4039 6.153000 AGTCCATAATAGCCTGTAATAGTCCG 59.847 42.308 0.00 0.00 0.00 4.79
3707 4040 7.397761 AGAGTCCATAATAGCCTGTAATAGTCC 59.602 40.741 0.00 0.00 0.00 3.85
3708 4041 8.356000 AGAGTCCATAATAGCCTGTAATAGTC 57.644 38.462 0.00 0.00 0.00 2.59
3709 4042 8.728596 AAGAGTCCATAATAGCCTGTAATAGT 57.271 34.615 0.00 0.00 0.00 2.12
3710 4043 9.646427 GAAAGAGTCCATAATAGCCTGTAATAG 57.354 37.037 0.00 0.00 0.00 1.73
3711 4044 8.594550 GGAAAGAGTCCATAATAGCCTGTAATA 58.405 37.037 0.00 0.00 46.97 0.98
3712 4045 7.454225 GGAAAGAGTCCATAATAGCCTGTAAT 58.546 38.462 0.00 0.00 46.97 1.89
3713 4046 6.827727 GGAAAGAGTCCATAATAGCCTGTAA 58.172 40.000 0.00 0.00 46.97 2.41
3714 4047 6.420913 GGAAAGAGTCCATAATAGCCTGTA 57.579 41.667 0.00 0.00 46.97 2.74
3715 4048 5.297569 GGAAAGAGTCCATAATAGCCTGT 57.702 43.478 0.00 0.00 46.97 4.00
3728 4061 7.808381 GGCAAGTTTAATTAGTTGGAAAGAGTC 59.192 37.037 0.00 0.00 0.00 3.36
3729 4062 7.255836 GGGCAAGTTTAATTAGTTGGAAAGAGT 60.256 37.037 0.00 0.00 0.00 3.24
3730 4063 7.090808 GGGCAAGTTTAATTAGTTGGAAAGAG 58.909 38.462 0.00 0.00 0.00 2.85
3731 4064 6.014925 GGGGCAAGTTTAATTAGTTGGAAAGA 60.015 38.462 0.00 0.00 0.00 2.52
3732 4065 6.163476 GGGGCAAGTTTAATTAGTTGGAAAG 58.837 40.000 0.00 0.00 0.00 2.62
3733 4066 5.012251 GGGGGCAAGTTTAATTAGTTGGAAA 59.988 40.000 0.00 0.00 0.00 3.13
3734 4067 4.528987 GGGGGCAAGTTTAATTAGTTGGAA 59.471 41.667 0.00 0.00 0.00 3.53
3735 4068 4.090819 GGGGGCAAGTTTAATTAGTTGGA 58.909 43.478 0.00 0.00 0.00 3.53
3736 4069 4.465632 GGGGGCAAGTTTAATTAGTTGG 57.534 45.455 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.