Multiple sequence alignment - TraesCS3B01G494400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G494400 chr3B 100.000 3698 0 0 1 3698 739104890 739108587 0.000000e+00 6830.0
1 TraesCS3B01G494400 chr3D 94.423 1273 51 6 953 2205 556138559 556139831 0.000000e+00 1940.0
2 TraesCS3B01G494400 chr3D 76.792 1409 243 42 963 2324 556043657 556045028 0.000000e+00 713.0
3 TraesCS3B01G494400 chr3D 94.059 404 24 0 1 404 556128357 556128760 6.790000e-172 614.0
4 TraesCS3B01G494400 chr3D 84.725 563 78 7 3142 3698 15260551 15261111 1.160000e-154 556.0
5 TraesCS3B01G494400 chr3D 84.725 563 78 7 3142 3698 48965656 48966216 1.160000e-154 556.0
6 TraesCS3B01G494400 chr3D 84.574 564 78 8 3142 3698 15242687 15243248 5.400000e-153 551.0
7 TraesCS3B01G494400 chr3D 92.368 380 28 1 444 822 556128761 556129140 1.170000e-149 540.0
8 TraesCS3B01G494400 chr3D 90.774 336 18 2 2245 2567 556139820 556140155 1.580000e-118 436.0
9 TraesCS3B01G494400 chr3D 77.407 270 52 9 2404 2667 557442164 557442430 6.400000e-33 152.0
10 TraesCS3B01G494400 chr3D 87.273 55 6 1 770 824 608934550 608934497 1.110000e-05 62.1
11 TraesCS3B01G494400 chr3A 90.586 1296 79 14 1434 2711 693151074 693152344 0.000000e+00 1677.0
12 TraesCS3B01G494400 chr3A 88.725 612 66 2 1 609 693121826 693121215 0.000000e+00 745.0
13 TraesCS3B01G494400 chr3A 91.115 529 32 2 923 1436 693134630 693135158 0.000000e+00 702.0
14 TraesCS3B01G494400 chr3A 76.957 1341 232 38 1036 2324 692986106 692987421 0.000000e+00 693.0
15 TraesCS3B01G494400 chr3A 90.265 226 18 4 2837 3060 157724368 157724145 3.610000e-75 292.0
16 TraesCS3B01G494400 chr3A 91.176 68 4 2 2763 2829 693152518 693152452 1.410000e-14 91.6
17 TraesCS3B01G494400 chr3A 87.097 62 8 0 762 823 506402457 506402518 1.840000e-08 71.3
18 TraesCS3B01G494400 chr3A 97.222 36 0 1 770 804 742329763 742329728 3.990000e-05 60.2
19 TraesCS3B01G494400 chr5D 85.561 561 71 9 3145 3698 246019623 246019066 2.480000e-161 579.0
20 TraesCS3B01G494400 chr5D 85.357 560 76 5 3144 3698 483795882 483795324 3.200000e-160 575.0
21 TraesCS3B01G494400 chr2D 85.435 563 74 7 3142 3698 552731446 552732006 2.480000e-161 579.0
22 TraesCS3B01G494400 chr2D 84.956 565 73 11 3142 3698 586127817 586128377 2.490000e-156 562.0
23 TraesCS3B01G494400 chr2D 84.794 559 79 5 3145 3698 126965506 126964949 1.160000e-154 556.0
24 TraesCS3B01G494400 chr7D 85.018 554 75 7 3142 3689 423694638 423695189 1.160000e-154 556.0
25 TraesCS3B01G494400 chr1A 91.593 226 15 4 2837 3060 7949499 7949722 3.590000e-80 309.0
26 TraesCS3B01G494400 chr1A 85.714 63 7 2 762 823 234510070 234510131 8.570000e-07 65.8
27 TraesCS3B01G494400 chr6A 90.708 226 17 4 2837 3060 603917545 603917768 7.760000e-77 298.0
28 TraesCS3B01G494400 chr6A 87.302 63 6 2 762 823 387664848 387664909 1.840000e-08 71.3
29 TraesCS3B01G494400 chr7A 89.744 234 19 5 2829 3060 639859372 639859142 1.000000e-75 294.0
30 TraesCS3B01G494400 chr7A 90.265 226 18 4 2837 3060 493517692 493517915 3.610000e-75 292.0
31 TraesCS3B01G494400 chr7A 90.265 226 18 4 2837 3060 578430626 578430403 3.610000e-75 292.0
32 TraesCS3B01G494400 chr7A 90.265 226 18 4 2837 3060 579481377 579481154 3.610000e-75 292.0
33 TraesCS3B01G494400 chr5A 90.265 226 19 3 2837 3060 572302565 572302789 3.610000e-75 292.0
34 TraesCS3B01G494400 chr5A 90.265 226 17 5 2837 3060 345670745 345670523 1.300000e-74 291.0
35 TraesCS3B01G494400 chr5B 80.508 118 21 1 708 823 31110919 31110802 5.090000e-14 89.8
36 TraesCS3B01G494400 chr7B 79.508 122 20 4 707 825 689899788 689899907 8.510000e-12 82.4
37 TraesCS3B01G494400 chr7B 89.062 64 7 0 762 825 689901412 689901475 3.060000e-11 80.5
38 TraesCS3B01G494400 chr1B 77.966 118 24 2 707 822 679458146 679458263 5.120000e-09 73.1
39 TraesCS3B01G494400 chr4A 92.000 50 4 0 776 825 729348560 729348609 1.840000e-08 71.3
40 TraesCS3B01G494400 chr4A 92.683 41 3 0 762 802 682739128 682739088 3.990000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G494400 chr3B 739104890 739108587 3697 False 6830 6830 100.0000 1 3698 1 chr3B.!!$F1 3697
1 TraesCS3B01G494400 chr3D 556138559 556140155 1596 False 1188 1940 92.5985 953 2567 2 chr3D.!!$F7 1614
2 TraesCS3B01G494400 chr3D 556043657 556045028 1371 False 713 713 76.7920 963 2324 1 chr3D.!!$F4 1361
3 TraesCS3B01G494400 chr3D 556128357 556129140 783 False 577 614 93.2135 1 822 2 chr3D.!!$F6 821
4 TraesCS3B01G494400 chr3D 15260551 15261111 560 False 556 556 84.7250 3142 3698 1 chr3D.!!$F2 556
5 TraesCS3B01G494400 chr3D 48965656 48966216 560 False 556 556 84.7250 3142 3698 1 chr3D.!!$F3 556
6 TraesCS3B01G494400 chr3D 15242687 15243248 561 False 551 551 84.5740 3142 3698 1 chr3D.!!$F1 556
7 TraesCS3B01G494400 chr3A 693151074 693152344 1270 False 1677 1677 90.5860 1434 2711 1 chr3A.!!$F4 1277
8 TraesCS3B01G494400 chr3A 693121215 693121826 611 True 745 745 88.7250 1 609 1 chr3A.!!$R2 608
9 TraesCS3B01G494400 chr3A 693134630 693135158 528 False 702 702 91.1150 923 1436 1 chr3A.!!$F3 513
10 TraesCS3B01G494400 chr3A 692986106 692987421 1315 False 693 693 76.9570 1036 2324 1 chr3A.!!$F2 1288
11 TraesCS3B01G494400 chr5D 246019066 246019623 557 True 579 579 85.5610 3145 3698 1 chr5D.!!$R1 553
12 TraesCS3B01G494400 chr5D 483795324 483795882 558 True 575 575 85.3570 3144 3698 1 chr5D.!!$R2 554
13 TraesCS3B01G494400 chr2D 552731446 552732006 560 False 579 579 85.4350 3142 3698 1 chr2D.!!$F1 556
14 TraesCS3B01G494400 chr2D 586127817 586128377 560 False 562 562 84.9560 3142 3698 1 chr2D.!!$F2 556
15 TraesCS3B01G494400 chr2D 126964949 126965506 557 True 556 556 84.7940 3145 3698 1 chr2D.!!$R1 553
16 TraesCS3B01G494400 chr7D 423694638 423695189 551 False 556 556 85.0180 3142 3689 1 chr7D.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.033090 ACACGACGAAGAGGGGTTTC 59.967 55.0 0.00 0.0 0.00 2.78 F
650 654 0.248289 CCGACGGTCCAGTTTACCAT 59.752 55.0 5.48 0.0 36.78 3.55 F
2456 2578 0.097325 GAGTACGACAGCCTCGACTG 59.903 60.0 8.32 1.7 46.14 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 1955 0.244178 GTGTTGTCGAGGAGGGAGAC 59.756 60.0 0.00 0.0 35.61 3.36 R
2544 2666 0.693049 AGAATCTGGCCAACGTCCTT 59.307 50.0 7.01 0.0 0.00 3.36 R
3388 3510 0.405198 TCCTGCATCAACACCATGGT 59.595 50.0 13.00 13.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 2.619147 TGGACAAAAACACGACGAAGA 58.381 42.857 0.00 0.00 0.00 2.87
81 82 1.937899 ACAAAAACACGACGAAGAGGG 59.062 47.619 0.00 0.00 0.00 4.30
86 87 0.033090 ACACGACGAAGAGGGGTTTC 59.967 55.000 0.00 0.00 0.00 2.78
142 143 2.158608 CCAGGGACCAAATCATACCCTC 60.159 54.545 0.00 0.00 46.70 4.30
219 220 5.243507 TCCCATTGATGCGCACAATATTATT 59.756 36.000 26.50 6.04 36.40 1.40
231 232 7.535258 GCGCACAATATTATTCCTAAATGTGAG 59.465 37.037 0.30 4.60 34.85 3.51
277 278 7.289310 TGATTGAGGAATATAAAGCCATGTGA 58.711 34.615 0.00 0.00 0.00 3.58
279 280 8.716674 ATTGAGGAATATAAAGCCATGTGATT 57.283 30.769 0.00 0.00 0.00 2.57
353 354 5.121105 CAGATGAGTTGAGTTCCATATGCA 58.879 41.667 0.00 0.00 0.00 3.96
372 373 0.552848 ATCGGCAATTGGGTCCATCT 59.447 50.000 7.72 0.00 0.00 2.90
376 377 1.205417 GGCAATTGGGTCCATCTTGTG 59.795 52.381 7.72 0.68 0.00 3.33
436 437 1.757699 CTAGAGTAGGAAGGGGTGTGC 59.242 57.143 0.00 0.00 0.00 4.57
453 454 2.579201 CGGCTCGGTCATGAGGTT 59.421 61.111 0.00 0.00 36.47 3.50
569 573 0.322456 AACTAAATCGGCTGGCTGCA 60.322 50.000 18.32 0.00 45.15 4.41
609 613 4.546829 AGTGAAGCCGGACATACTTTAA 57.453 40.909 5.05 0.00 0.00 1.52
615 619 6.601613 TGAAGCCGGACATACTTTAATGAAAT 59.398 34.615 5.05 0.00 0.00 2.17
619 623 6.201517 CCGGACATACTTTAATGAAATGCTG 58.798 40.000 0.00 2.07 0.00 4.41
638 642 1.004200 GAATGGGTTGTCCGACGGT 60.004 57.895 14.79 0.00 38.76 4.83
650 654 0.248289 CCGACGGTCCAGTTTACCAT 59.752 55.000 5.48 0.00 36.78 3.55
656 660 1.208776 GGTCCAGTTTACCATAGCCGT 59.791 52.381 0.00 0.00 36.96 5.68
671 675 1.303091 GCCGTCGTTTTGGCCTATGT 61.303 55.000 3.32 0.00 45.73 2.29
674 678 2.940410 CCGTCGTTTTGGCCTATGTAAT 59.060 45.455 3.32 0.00 0.00 1.89
677 681 4.807304 CGTCGTTTTGGCCTATGTAATAGT 59.193 41.667 3.32 0.00 45.54 2.12
681 685 8.137437 GTCGTTTTGGCCTATGTAATAGTAGTA 58.863 37.037 3.32 0.00 45.54 1.82
715 719 0.743097 GCCAGGATTTGACAGATGGC 59.257 55.000 0.00 0.00 45.61 4.40
749 753 4.460382 AGATCCAACGGTTAGAAACGTCTA 59.540 41.667 5.72 0.00 43.31 2.59
763 768 5.803967 AGAAACGTCTATATTGTGAACCGAC 59.196 40.000 0.00 0.00 29.93 4.79
773 778 1.068895 TGTGAACCGACGGCTAGAAAA 59.931 47.619 15.39 0.00 0.00 2.29
805 810 0.682292 GAGGGCTCGCTTTAGGCTAT 59.318 55.000 0.00 0.00 41.59 2.97
814 819 5.064834 GCTCGCTTTAGGCTATGTTTTACTT 59.935 40.000 0.00 0.00 39.13 2.24
842 847 9.834628 CCTAAATTTAAAGAGTTTGTAATCGCA 57.165 29.630 0.00 0.00 0.00 5.10
845 850 8.687824 AATTTAAAGAGTTTGTAATCGCATGG 57.312 30.769 0.00 0.00 0.00 3.66
846 851 7.441890 TTTAAAGAGTTTGTAATCGCATGGA 57.558 32.000 0.00 0.00 0.00 3.41
847 852 7.624360 TTAAAGAGTTTGTAATCGCATGGAT 57.376 32.000 0.00 0.00 36.78 3.41
848 853 8.725405 TTAAAGAGTTTGTAATCGCATGGATA 57.275 30.769 0.00 0.00 34.08 2.59
849 854 7.624360 AAAGAGTTTGTAATCGCATGGATAA 57.376 32.000 0.00 0.00 34.08 1.75
850 855 7.624360 AAGAGTTTGTAATCGCATGGATAAA 57.376 32.000 0.00 0.00 34.08 1.40
851 856 7.016361 AGAGTTTGTAATCGCATGGATAAAC 57.984 36.000 0.00 4.38 33.92 2.01
852 857 6.597672 AGAGTTTGTAATCGCATGGATAAACA 59.402 34.615 15.66 11.88 35.20 2.83
853 858 7.120579 AGAGTTTGTAATCGCATGGATAAACAA 59.879 33.333 15.66 15.00 38.43 2.83
854 859 7.598278 AGTTTGTAATCGCATGGATAAACAAA 58.402 30.769 19.80 19.80 42.65 2.83
855 860 7.804614 TTTGTAATCGCATGGATAAACAAAC 57.195 32.000 19.80 7.46 41.44 2.93
856 861 6.502136 TGTAATCGCATGGATAAACAAACA 57.498 33.333 0.00 0.00 34.08 2.83
857 862 7.094508 TGTAATCGCATGGATAAACAAACAT 57.905 32.000 0.00 0.00 34.08 2.71
858 863 7.542890 TGTAATCGCATGGATAAACAAACATT 58.457 30.769 0.00 0.00 34.08 2.71
859 864 8.678199 TGTAATCGCATGGATAAACAAACATTA 58.322 29.630 0.00 0.00 34.08 1.90
860 865 9.509855 GTAATCGCATGGATAAACAAACATTAA 57.490 29.630 0.00 0.00 34.08 1.40
862 867 8.801715 ATCGCATGGATAAACAAACATTAATC 57.198 30.769 0.00 0.00 32.17 1.75
863 868 6.909895 TCGCATGGATAAACAAACATTAATCG 59.090 34.615 0.00 0.00 0.00 3.34
864 869 6.690957 CGCATGGATAAACAAACATTAATCGT 59.309 34.615 0.00 0.00 0.00 3.73
865 870 7.219917 CGCATGGATAAACAAACATTAATCGTT 59.780 33.333 0.00 0.00 0.00 3.85
866 871 9.509855 GCATGGATAAACAAACATTAATCGTTA 57.490 29.630 0.00 0.00 0.00 3.18
906 911 9.810545 TGTAGGAATTGTTTTAGGAAAGTTTTG 57.189 29.630 0.00 0.00 0.00 2.44
909 914 8.977412 AGGAATTGTTTTAGGAAAGTTTTGAGA 58.023 29.630 0.00 0.00 0.00 3.27
910 915 9.594478 GGAATTGTTTTAGGAAAGTTTTGAGAA 57.406 29.630 0.00 0.00 0.00 2.87
917 922 9.730420 TTTTAGGAAAGTTTTGAGAAGAAATCG 57.270 29.630 0.00 0.00 0.00 3.34
918 923 6.319141 AGGAAAGTTTTGAGAAGAAATCGG 57.681 37.500 0.00 0.00 0.00 4.18
919 924 6.062095 AGGAAAGTTTTGAGAAGAAATCGGA 58.938 36.000 0.00 0.00 0.00 4.55
920 925 6.546034 AGGAAAGTTTTGAGAAGAAATCGGAA 59.454 34.615 0.00 0.00 0.00 4.30
921 926 7.231519 AGGAAAGTTTTGAGAAGAAATCGGAAT 59.768 33.333 0.00 0.00 0.00 3.01
937 942 3.818773 TCGGAATTGTTTGGGAAGAGAAC 59.181 43.478 0.00 0.00 0.00 3.01
941 946 3.553828 TTGTTTGGGAAGAGAACGTCT 57.446 42.857 0.00 0.00 36.94 4.18
942 947 4.675976 TTGTTTGGGAAGAGAACGTCTA 57.324 40.909 0.00 0.00 32.65 2.59
1282 1306 3.068881 CCCTCTTCTCCCGCAACA 58.931 61.111 0.00 0.00 0.00 3.33
1360 1390 0.460311 AAGATACTGCCCCGAAGACG 59.540 55.000 0.00 0.00 39.43 4.18
1462 1492 3.736224 CCATCTGCAGTGGCCCCT 61.736 66.667 14.67 0.00 40.13 4.79
1513 1555 2.354729 CCGATGGCCTTGTTGGGA 59.645 61.111 3.32 0.00 36.00 4.37
1652 1728 1.258445 AATCCGCCGTCTGGAGAGTT 61.258 55.000 0.00 0.00 39.30 3.01
1767 1843 2.806929 CCAGCTCTCGAGGCTCTG 59.193 66.667 21.04 18.85 38.03 3.35
1784 1860 1.845627 CTGCACCTCACCCACATCCT 61.846 60.000 0.00 0.00 0.00 3.24
2066 2167 1.333931 GGTCGACATCTGCACGATCTA 59.666 52.381 18.91 0.00 38.27 1.98
2177 2287 3.499737 CATGGGCTCGTGGTTCGC 61.500 66.667 0.00 0.00 39.67 4.70
2364 2486 2.848679 TGGCAGTGGCACTCAGGA 60.849 61.111 19.13 0.00 43.71 3.86
2437 2559 1.154016 CACCGTCTCCACTACTGCG 60.154 63.158 0.00 0.00 0.00 5.18
2438 2560 1.303074 ACCGTCTCCACTACTGCGA 60.303 57.895 0.00 0.00 0.00 5.10
2447 2569 1.202043 CCACTACTGCGAGTACGACAG 60.202 57.143 10.19 10.19 43.49 3.51
2455 2577 2.469058 GAGTACGACAGCCTCGACT 58.531 57.895 8.32 7.15 46.14 4.18
2456 2578 0.097325 GAGTACGACAGCCTCGACTG 59.903 60.000 8.32 1.70 46.14 3.51
2577 2699 1.639298 GATTCTTGCTCCGCAACGCT 61.639 55.000 0.00 0.00 43.99 5.07
2598 2720 4.739137 GCTGCCGTTCTTGAGAATCTCTAT 60.739 45.833 11.92 0.00 36.33 1.98
2604 2726 4.327982 TCTTGAGAATCTCTATTGCGGG 57.672 45.455 11.92 0.00 34.92 6.13
2608 2730 3.181465 TGAGAATCTCTATTGCGGGTTCC 60.181 47.826 11.92 0.00 34.92 3.62
2633 2755 1.374125 GGCCGCATTGGGTTCAAAC 60.374 57.895 0.00 0.00 38.63 2.93
2658 2780 1.958205 GATGCGCGAGATGGAAGGG 60.958 63.158 12.10 0.00 0.00 3.95
2677 2799 0.685097 GTGGGTGGTCAGTGAGCTAA 59.315 55.000 22.08 0.95 0.00 3.09
2681 2803 1.338200 GGTGGTCAGTGAGCTAACCAG 60.338 57.143 22.08 0.00 43.43 4.00
2711 2833 5.645067 AGTTCCGTTGATGGATGCATATATG 59.355 40.000 8.45 8.45 38.00 1.78
2712 2834 3.940852 TCCGTTGATGGATGCATATATGC 59.059 43.478 27.45 27.45 42.93 3.14
2725 2847 4.445452 CATATATGCAGGGTCCAATTGC 57.555 45.455 0.00 5.55 38.30 3.56
2727 2849 4.615170 TGCAGGGTCCAATTGCAA 57.385 50.000 0.00 0.00 44.13 4.08
2728 2850 2.048601 TGCAGGGTCCAATTGCAAC 58.951 52.632 0.00 0.17 44.13 4.17
2729 2851 0.758310 TGCAGGGTCCAATTGCAACA 60.758 50.000 0.00 0.00 44.13 3.33
2730 2852 0.392336 GCAGGGTCCAATTGCAACAA 59.608 50.000 0.00 0.00 37.75 2.83
2731 2853 1.873486 GCAGGGTCCAATTGCAACAAC 60.873 52.381 0.00 0.00 37.75 3.32
2732 2854 1.411977 CAGGGTCCAATTGCAACAACA 59.588 47.619 0.00 0.00 0.00 3.33
2733 2855 2.114616 AGGGTCCAATTGCAACAACAA 58.885 42.857 0.00 0.00 0.00 2.83
2734 2856 2.158971 AGGGTCCAATTGCAACAACAAC 60.159 45.455 0.00 0.00 31.03 3.32
2735 2857 2.419297 GGGTCCAATTGCAACAACAACA 60.419 45.455 0.00 0.00 31.03 3.33
2736 2858 3.265791 GGTCCAATTGCAACAACAACAA 58.734 40.909 0.00 0.00 31.03 2.83
2737 2859 3.063316 GGTCCAATTGCAACAACAACAAC 59.937 43.478 0.00 0.00 31.03 3.32
2738 2860 3.932089 GTCCAATTGCAACAACAACAACT 59.068 39.130 0.00 0.00 31.03 3.16
2739 2861 5.105752 GTCCAATTGCAACAACAACAACTA 58.894 37.500 0.00 0.00 31.03 2.24
2740 2862 5.752955 GTCCAATTGCAACAACAACAACTAT 59.247 36.000 0.00 0.00 31.03 2.12
2741 2863 5.982516 TCCAATTGCAACAACAACAACTATC 59.017 36.000 0.00 0.00 31.03 2.08
2742 2864 5.752472 CCAATTGCAACAACAACAACTATCA 59.248 36.000 0.00 0.00 31.03 2.15
2743 2865 6.257411 CCAATTGCAACAACAACAACTATCAA 59.743 34.615 0.00 0.00 31.03 2.57
2744 2866 7.339207 CAATTGCAACAACAACAACTATCAAG 58.661 34.615 0.00 0.00 31.03 3.02
2745 2867 5.826601 TGCAACAACAACAACTATCAAGA 57.173 34.783 0.00 0.00 0.00 3.02
2746 2868 6.201226 TGCAACAACAACAACTATCAAGAA 57.799 33.333 0.00 0.00 0.00 2.52
2747 2869 6.625362 TGCAACAACAACAACTATCAAGAAA 58.375 32.000 0.00 0.00 0.00 2.52
2748 2870 7.093354 TGCAACAACAACAACTATCAAGAAAA 58.907 30.769 0.00 0.00 0.00 2.29
2749 2871 7.600375 TGCAACAACAACAACTATCAAGAAAAA 59.400 29.630 0.00 0.00 0.00 1.94
2766 2888 2.853235 AAAACTTCGGGAGGATTCGT 57.147 45.000 0.00 0.00 0.00 3.85
2767 2889 2.094762 AAACTTCGGGAGGATTCGTG 57.905 50.000 0.00 0.00 0.00 4.35
2768 2890 1.263356 AACTTCGGGAGGATTCGTGA 58.737 50.000 0.00 0.00 0.00 4.35
2769 2891 0.531200 ACTTCGGGAGGATTCGTGAC 59.469 55.000 0.00 0.00 0.00 3.67
2770 2892 0.530744 CTTCGGGAGGATTCGTGACA 59.469 55.000 0.00 0.00 0.00 3.58
2771 2893 1.137086 CTTCGGGAGGATTCGTGACAT 59.863 52.381 0.00 0.00 0.00 3.06
2772 2894 1.191535 TCGGGAGGATTCGTGACATT 58.808 50.000 0.00 0.00 0.00 2.71
2773 2895 1.553248 TCGGGAGGATTCGTGACATTT 59.447 47.619 0.00 0.00 0.00 2.32
2774 2896 1.933853 CGGGAGGATTCGTGACATTTC 59.066 52.381 0.00 0.00 0.00 2.17
2775 2897 2.676750 CGGGAGGATTCGTGACATTTCA 60.677 50.000 0.00 0.00 0.00 2.69
2776 2898 3.343617 GGGAGGATTCGTGACATTTCAA 58.656 45.455 0.00 0.00 31.90 2.69
2777 2899 3.947834 GGGAGGATTCGTGACATTTCAAT 59.052 43.478 0.00 0.00 31.90 2.57
2778 2900 4.035675 GGGAGGATTCGTGACATTTCAATC 59.964 45.833 0.00 0.00 31.90 2.67
2779 2901 4.635765 GGAGGATTCGTGACATTTCAATCA 59.364 41.667 0.00 0.00 31.90 2.57
2780 2902 5.297776 GGAGGATTCGTGACATTTCAATCAT 59.702 40.000 0.00 0.00 31.90 2.45
2781 2903 6.369059 AGGATTCGTGACATTTCAATCATC 57.631 37.500 0.00 0.00 31.90 2.92
2782 2904 6.118170 AGGATTCGTGACATTTCAATCATCT 58.882 36.000 0.00 0.00 31.90 2.90
2783 2905 6.600822 AGGATTCGTGACATTTCAATCATCTT 59.399 34.615 0.00 0.00 31.90 2.40
2784 2906 7.121759 AGGATTCGTGACATTTCAATCATCTTT 59.878 33.333 0.00 0.00 31.90 2.52
2785 2907 7.219535 GGATTCGTGACATTTCAATCATCTTTG 59.780 37.037 0.00 0.00 31.90 2.77
2786 2908 5.393124 TCGTGACATTTCAATCATCTTTGC 58.607 37.500 0.00 0.00 31.90 3.68
2787 2909 5.181811 TCGTGACATTTCAATCATCTTTGCT 59.818 36.000 0.00 0.00 31.90 3.91
2788 2910 6.371271 TCGTGACATTTCAATCATCTTTGCTA 59.629 34.615 0.00 0.00 31.90 3.49
2789 2911 7.066163 TCGTGACATTTCAATCATCTTTGCTAT 59.934 33.333 0.00 0.00 31.90 2.97
2790 2912 7.699391 CGTGACATTTCAATCATCTTTGCTATT 59.301 33.333 0.00 0.00 31.90 1.73
2791 2913 9.362539 GTGACATTTCAATCATCTTTGCTATTT 57.637 29.630 0.00 0.00 31.90 1.40
2792 2914 9.932207 TGACATTTCAATCATCTTTGCTATTTT 57.068 25.926 0.00 0.00 0.00 1.82
2800 2922 9.485591 CAATCATCTTTGCTATTTTTCAATTGC 57.514 29.630 0.00 0.00 40.41 3.56
2801 2923 9.444600 AATCATCTTTGCTATTTTTCAATTGCT 57.555 25.926 0.00 0.00 40.58 3.91
2802 2924 8.470040 TCATCTTTGCTATTTTTCAATTGCTC 57.530 30.769 0.00 0.00 40.58 4.26
2803 2925 6.932901 TCTTTGCTATTTTTCAATTGCTCG 57.067 33.333 0.00 0.00 40.58 5.03
2804 2926 6.676950 TCTTTGCTATTTTTCAATTGCTCGA 58.323 32.000 0.00 0.00 40.58 4.04
2805 2927 7.315142 TCTTTGCTATTTTTCAATTGCTCGAT 58.685 30.769 0.00 0.00 40.58 3.59
2806 2928 6.874297 TTGCTATTTTTCAATTGCTCGATG 57.126 33.333 0.00 0.00 40.58 3.84
2807 2929 6.193514 TGCTATTTTTCAATTGCTCGATGA 57.806 33.333 0.00 0.00 40.58 2.92
2808 2930 6.619744 TGCTATTTTTCAATTGCTCGATGAA 58.380 32.000 0.00 0.00 40.58 2.57
2809 2931 6.527722 TGCTATTTTTCAATTGCTCGATGAAC 59.472 34.615 0.00 0.00 40.58 3.18
2810 2932 6.749118 GCTATTTTTCAATTGCTCGATGAACT 59.251 34.615 0.00 0.00 37.92 3.01
2811 2933 7.274250 GCTATTTTTCAATTGCTCGATGAACTT 59.726 33.333 0.00 0.00 37.92 2.66
2812 2934 7.951530 ATTTTTCAATTGCTCGATGAACTTT 57.048 28.000 0.00 0.00 33.13 2.66
2813 2935 6.752335 TTTTCAATTGCTCGATGAACTTTG 57.248 33.333 0.00 0.00 33.13 2.77
2814 2936 3.825308 TCAATTGCTCGATGAACTTTGC 58.175 40.909 0.00 0.00 0.00 3.68
2815 2937 3.503363 TCAATTGCTCGATGAACTTTGCT 59.497 39.130 0.00 0.00 0.00 3.91
2816 2938 4.022935 TCAATTGCTCGATGAACTTTGCTT 60.023 37.500 0.00 0.00 0.00 3.91
2817 2939 3.542712 TTGCTCGATGAACTTTGCTTC 57.457 42.857 0.00 0.00 0.00 3.86
2818 2940 1.460743 TGCTCGATGAACTTTGCTTCG 59.539 47.619 0.00 0.00 35.17 3.79
2819 2941 1.461127 GCTCGATGAACTTTGCTTCGT 59.539 47.619 0.00 0.00 35.32 3.85
2820 2942 2.666508 GCTCGATGAACTTTGCTTCGTA 59.333 45.455 0.00 0.00 35.32 3.43
2821 2943 3.482112 GCTCGATGAACTTTGCTTCGTAC 60.482 47.826 0.00 0.00 35.32 3.67
2822 2944 3.644823 TCGATGAACTTTGCTTCGTACA 58.355 40.909 0.00 0.00 35.32 2.90
2823 2945 3.673338 TCGATGAACTTTGCTTCGTACAG 59.327 43.478 0.00 0.00 35.32 2.74
2824 2946 3.722082 CGATGAACTTTGCTTCGTACAGC 60.722 47.826 0.00 0.00 40.55 4.40
2825 2947 1.871039 TGAACTTTGCTTCGTACAGCC 59.129 47.619 2.98 0.00 39.25 4.85
2826 2948 1.197036 GAACTTTGCTTCGTACAGCCC 59.803 52.381 2.98 0.00 39.25 5.19
2827 2949 0.605589 ACTTTGCTTCGTACAGCCCC 60.606 55.000 2.98 0.00 39.25 5.80
2828 2950 0.321653 CTTTGCTTCGTACAGCCCCT 60.322 55.000 2.98 0.00 39.25 4.79
2829 2951 0.109723 TTTGCTTCGTACAGCCCCTT 59.890 50.000 2.98 0.00 39.25 3.95
2830 2952 0.109723 TTGCTTCGTACAGCCCCTTT 59.890 50.000 2.98 0.00 39.25 3.11
2831 2953 0.978151 TGCTTCGTACAGCCCCTTTA 59.022 50.000 2.98 0.00 39.25 1.85
2832 2954 1.348366 TGCTTCGTACAGCCCCTTTAA 59.652 47.619 2.98 0.00 39.25 1.52
2833 2955 2.026636 TGCTTCGTACAGCCCCTTTAAT 60.027 45.455 2.98 0.00 39.25 1.40
2834 2956 2.612672 GCTTCGTACAGCCCCTTTAATC 59.387 50.000 0.00 0.00 33.21 1.75
2835 2957 3.869065 CTTCGTACAGCCCCTTTAATCA 58.131 45.455 0.00 0.00 0.00 2.57
2836 2958 3.985019 TCGTACAGCCCCTTTAATCAA 57.015 42.857 0.00 0.00 0.00 2.57
2837 2959 4.289238 TCGTACAGCCCCTTTAATCAAA 57.711 40.909 0.00 0.00 0.00 2.69
2838 2960 4.653868 TCGTACAGCCCCTTTAATCAAAA 58.346 39.130 0.00 0.00 0.00 2.44
2839 2961 4.698304 TCGTACAGCCCCTTTAATCAAAAG 59.302 41.667 0.00 0.00 43.66 2.27
2851 2973 7.145932 CTTTAATCAAAAGGGTGTGTCTAGG 57.854 40.000 0.00 0.00 40.86 3.02
2852 2974 4.993705 AATCAAAAGGGTGTGTCTAGGA 57.006 40.909 0.00 0.00 0.00 2.94
2853 2975 3.764237 TCAAAAGGGTGTGTCTAGGAC 57.236 47.619 0.00 0.00 0.00 3.85
2854 2976 3.042682 TCAAAAGGGTGTGTCTAGGACA 58.957 45.455 0.00 0.00 40.50 4.02
2880 3002 8.543862 CATCTAGATGTGCTCTAATTATTGCA 57.456 34.615 22.42 8.01 36.02 4.08
2890 3012 8.146479 TGCTCTAATTATTGCACATCTAAGTG 57.854 34.615 8.01 0.00 42.37 3.16
2891 3013 7.986889 TGCTCTAATTATTGCACATCTAAGTGA 59.013 33.333 8.01 0.00 42.05 3.41
2892 3014 8.494347 GCTCTAATTATTGCACATCTAAGTGAG 58.506 37.037 0.00 0.00 42.05 3.51
2893 3015 9.539825 CTCTAATTATTGCACATCTAAGTGAGT 57.460 33.333 0.00 0.00 42.05 3.41
2894 3016 9.317936 TCTAATTATTGCACATCTAAGTGAGTG 57.682 33.333 0.00 0.00 42.05 3.51
2895 3017 9.317936 CTAATTATTGCACATCTAAGTGAGTGA 57.682 33.333 0.00 0.00 42.05 3.41
2896 3018 8.565896 AATTATTGCACATCTAAGTGAGTGAA 57.434 30.769 0.00 0.00 42.05 3.18
2897 3019 8.743085 ATTATTGCACATCTAAGTGAGTGAAT 57.257 30.769 0.00 0.00 42.05 2.57
2898 3020 9.836864 ATTATTGCACATCTAAGTGAGTGAATA 57.163 29.630 0.00 0.00 42.05 1.75
2899 3021 9.665719 TTATTGCACATCTAAGTGAGTGAATAA 57.334 29.630 0.00 0.00 42.05 1.40
2900 3022 7.977789 TTGCACATCTAAGTGAGTGAATAAA 57.022 32.000 0.00 0.00 42.05 1.40
2901 3023 7.601073 TGCACATCTAAGTGAGTGAATAAAG 57.399 36.000 0.00 0.00 42.05 1.85
2902 3024 6.092670 TGCACATCTAAGTGAGTGAATAAAGC 59.907 38.462 0.00 0.00 42.05 3.51
2903 3025 6.092670 GCACATCTAAGTGAGTGAATAAAGCA 59.907 38.462 0.00 0.00 42.05 3.91
2904 3026 7.201679 GCACATCTAAGTGAGTGAATAAAGCAT 60.202 37.037 0.00 0.00 42.05 3.79
2905 3027 9.317936 CACATCTAAGTGAGTGAATAAAGCATA 57.682 33.333 0.00 0.00 42.05 3.14
2906 3028 9.890629 ACATCTAAGTGAGTGAATAAAGCATAA 57.109 29.630 0.00 0.00 0.00 1.90
2912 3034 9.507329 AAGTGAGTGAATAAAGCATAAAGAGAA 57.493 29.630 0.00 0.00 0.00 2.87
2913 3035 9.507329 AGTGAGTGAATAAAGCATAAAGAGAAA 57.493 29.630 0.00 0.00 0.00 2.52
2951 3073 5.811399 GGAAATATCCACACAAATCACGA 57.189 39.130 0.00 0.00 45.79 4.35
2952 3074 5.569413 GGAAATATCCACACAAATCACGAC 58.431 41.667 0.00 0.00 45.79 4.34
2953 3075 4.857871 AATATCCACACAAATCACGACG 57.142 40.909 0.00 0.00 0.00 5.12
2954 3076 2.163818 ATCCACACAAATCACGACGT 57.836 45.000 0.00 0.00 0.00 4.34
2955 3077 2.797074 TCCACACAAATCACGACGTA 57.203 45.000 0.00 0.00 0.00 3.57
2956 3078 3.095102 TCCACACAAATCACGACGTAA 57.905 42.857 0.00 0.00 0.00 3.18
2958 3080 3.054166 CCACACAAATCACGACGTAAGA 58.946 45.455 0.00 0.00 43.62 2.10
2959 3081 3.678072 CCACACAAATCACGACGTAAGAT 59.322 43.478 0.00 0.00 43.62 2.40
2960 3082 4.151689 CCACACAAATCACGACGTAAGATT 59.848 41.667 0.00 3.84 43.62 2.40
2961 3083 5.346551 CCACACAAATCACGACGTAAGATTA 59.653 40.000 12.36 0.00 43.62 1.75
2962 3084 6.128769 CCACACAAATCACGACGTAAGATTAA 60.129 38.462 12.36 0.00 43.62 1.40
2963 3085 7.412563 CCACACAAATCACGACGTAAGATTAAT 60.413 37.037 12.36 0.00 43.62 1.40
2964 3086 7.422462 CACACAAATCACGACGTAAGATTAATG 59.578 37.037 12.36 14.24 43.62 1.90
2965 3087 7.329962 ACACAAATCACGACGTAAGATTAATGA 59.670 33.333 20.03 6.51 43.62 2.57
2966 3088 7.630987 CACAAATCACGACGTAAGATTAATGAC 59.369 37.037 12.36 0.00 43.62 3.06
2967 3089 7.329962 ACAAATCACGACGTAAGATTAATGACA 59.670 33.333 12.36 0.00 43.62 3.58
2968 3090 8.328146 CAAATCACGACGTAAGATTAATGACAT 58.672 33.333 12.36 0.00 43.62 3.06
2969 3091 9.524106 AAATCACGACGTAAGATTAATGACATA 57.476 29.630 12.36 0.00 43.62 2.29
2970 3092 8.729529 ATCACGACGTAAGATTAATGACATAG 57.270 34.615 0.00 0.00 43.62 2.23
2971 3093 7.922837 TCACGACGTAAGATTAATGACATAGA 58.077 34.615 0.00 0.00 43.62 1.98
2972 3094 8.400186 TCACGACGTAAGATTAATGACATAGAA 58.600 33.333 0.00 0.00 43.62 2.10
2973 3095 8.469902 CACGACGTAAGATTAATGACATAGAAC 58.530 37.037 0.00 0.00 43.62 3.01
2974 3096 8.404000 ACGACGTAAGATTAATGACATAGAACT 58.596 33.333 0.00 0.00 43.62 3.01
2975 3097 9.234384 CGACGTAAGATTAATGACATAGAACTT 57.766 33.333 0.00 0.00 43.62 2.66
2984 3106 9.836864 ATTAATGACATAGAACTTAGATGTGCA 57.163 29.630 0.00 0.00 33.99 4.57
2985 3107 9.665719 TTAATGACATAGAACTTAGATGTGCAA 57.334 29.630 0.00 0.00 33.99 4.08
2986 3108 8.743085 AATGACATAGAACTTAGATGTGCAAT 57.257 30.769 0.00 0.00 33.99 3.56
2987 3109 9.836864 AATGACATAGAACTTAGATGTGCAATA 57.163 29.630 0.00 0.00 33.99 1.90
2988 3110 8.648557 TGACATAGAACTTAGATGTGCAATAC 57.351 34.615 0.00 0.00 33.99 1.89
2989 3111 8.478066 TGACATAGAACTTAGATGTGCAATACT 58.522 33.333 0.00 0.00 33.99 2.12
2990 3112 9.319143 GACATAGAACTTAGATGTGCAATACTT 57.681 33.333 0.00 0.00 33.99 2.24
2994 3116 8.668510 AGAACTTAGATGTGCAATACTTATGG 57.331 34.615 0.00 0.00 0.00 2.74
2995 3117 6.867662 ACTTAGATGTGCAATACTTATGGC 57.132 37.500 0.00 0.00 33.16 4.40
2996 3118 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
3023 3145 8.671921 CATCTAGATGTGCTTTATCAAAACTGT 58.328 33.333 22.42 0.00 34.23 3.55
3024 3146 9.890629 ATCTAGATGTGCTTTATCAAAACTGTA 57.109 29.630 3.89 0.00 0.00 2.74
3025 3147 9.719355 TCTAGATGTGCTTTATCAAAACTGTAA 57.281 29.630 0.00 0.00 0.00 2.41
3028 3150 9.013229 AGATGTGCTTTATCAAAACTGTAATCA 57.987 29.630 0.00 0.00 0.00 2.57
3029 3151 9.624697 GATGTGCTTTATCAAAACTGTAATCAA 57.375 29.630 0.00 0.00 0.00 2.57
3030 3152 9.979578 ATGTGCTTTATCAAAACTGTAATCAAA 57.020 25.926 0.00 0.00 0.00 2.69
3031 3153 9.809096 TGTGCTTTATCAAAACTGTAATCAAAA 57.191 25.926 0.00 0.00 0.00 2.44
3045 3167 9.582648 ACTGTAATCAAAAAGGGTAATACAGTT 57.417 29.630 8.89 0.00 45.84 3.16
3096 3218 7.671495 ATTTTGATGGAAATTACAAGTTGCC 57.329 32.000 1.81 0.00 0.00 4.52
3097 3219 6.418057 TTTGATGGAAATTACAAGTTGCCT 57.582 33.333 1.81 0.00 0.00 4.75
3098 3220 5.643379 TGATGGAAATTACAAGTTGCCTC 57.357 39.130 1.81 0.00 0.00 4.70
3099 3221 5.324409 TGATGGAAATTACAAGTTGCCTCT 58.676 37.500 1.81 0.00 0.00 3.69
3100 3222 5.774690 TGATGGAAATTACAAGTTGCCTCTT 59.225 36.000 1.81 0.00 0.00 2.85
3101 3223 5.705609 TGGAAATTACAAGTTGCCTCTTC 57.294 39.130 1.81 1.69 0.00 2.87
3102 3224 5.136828 TGGAAATTACAAGTTGCCTCTTCA 58.863 37.500 1.81 0.00 0.00 3.02
3103 3225 5.596361 TGGAAATTACAAGTTGCCTCTTCAA 59.404 36.000 1.81 0.00 0.00 2.69
3104 3226 6.267471 TGGAAATTACAAGTTGCCTCTTCAAT 59.733 34.615 1.81 0.00 0.00 2.57
3105 3227 6.808704 GGAAATTACAAGTTGCCTCTTCAATC 59.191 38.462 1.81 0.00 0.00 2.67
3106 3228 6.899393 AATTACAAGTTGCCTCTTCAATCA 57.101 33.333 1.81 0.00 0.00 2.57
3107 3229 6.899393 ATTACAAGTTGCCTCTTCAATCAA 57.101 33.333 1.81 0.00 0.00 2.57
3108 3230 6.707440 TTACAAGTTGCCTCTTCAATCAAA 57.293 33.333 1.81 0.00 0.00 2.69
3109 3231 5.596836 ACAAGTTGCCTCTTCAATCAAAA 57.403 34.783 1.81 0.00 0.00 2.44
3110 3232 5.976458 ACAAGTTGCCTCTTCAATCAAAAA 58.024 33.333 1.81 0.00 0.00 1.94
3111 3233 6.044682 ACAAGTTGCCTCTTCAATCAAAAAG 58.955 36.000 1.81 0.00 0.00 2.27
3112 3234 5.205759 AGTTGCCTCTTCAATCAAAAAGG 57.794 39.130 0.00 0.00 0.00 3.11
3113 3235 4.039609 AGTTGCCTCTTCAATCAAAAAGGG 59.960 41.667 0.00 0.00 0.00 3.95
3114 3236 3.575805 TGCCTCTTCAATCAAAAAGGGT 58.424 40.909 0.00 0.00 0.00 4.34
3115 3237 4.735369 TGCCTCTTCAATCAAAAAGGGTA 58.265 39.130 0.00 0.00 0.00 3.69
3116 3238 5.144100 TGCCTCTTCAATCAAAAAGGGTAA 58.856 37.500 0.00 0.00 0.00 2.85
3117 3239 5.779771 TGCCTCTTCAATCAAAAAGGGTAAT 59.220 36.000 0.00 0.00 0.00 1.89
3118 3240 6.951198 TGCCTCTTCAATCAAAAAGGGTAATA 59.049 34.615 0.00 0.00 0.00 0.98
3119 3241 7.093945 TGCCTCTTCAATCAAAAAGGGTAATAC 60.094 37.037 0.00 0.00 0.00 1.89
3120 3242 7.093945 GCCTCTTCAATCAAAAAGGGTAATACA 60.094 37.037 0.00 0.00 0.00 2.29
3121 3243 8.971073 CCTCTTCAATCAAAAAGGGTAATACAT 58.029 33.333 0.00 0.00 0.00 2.29
3175 3297 5.711976 AGAAGTAAACAGTAAGCATGGCAAT 59.288 36.000 0.00 0.00 0.00 3.56
3176 3298 5.567138 AGTAAACAGTAAGCATGGCAATC 57.433 39.130 0.00 0.00 0.00 2.67
3187 3309 1.404748 CATGGCAATCACGGTATGCAA 59.595 47.619 12.72 4.26 41.80 4.08
3220 3342 2.159043 AGCTAAGCATGTGAGCACGTAT 60.159 45.455 15.13 0.00 38.73 3.06
3232 3354 7.506328 TGTGAGCACGTATAGTACATAGAAT 57.494 36.000 0.00 0.00 0.00 2.40
3261 3383 9.594478 AAACATCTATGAACACAACATATACGA 57.406 29.630 0.00 0.00 31.26 3.43
3283 3405 5.135508 ACTAGCACATGAACGAGTAAACT 57.864 39.130 0.00 0.00 0.00 2.66
3293 3415 6.349243 TGAACGAGTAAACTAGGGATGAAA 57.651 37.500 0.00 0.00 0.00 2.69
3327 3449 2.671619 GTTAGCCAGGCCAACGCA 60.672 61.111 8.22 0.00 36.38 5.24
3383 3505 2.047655 CTTCTTGGTGGCGGCGTA 60.048 61.111 9.37 0.00 0.00 4.42
3398 3520 0.389426 GCGTAGTCGACCATGGTGTT 60.389 55.000 25.52 7.19 39.71 3.32
3407 3529 0.405198 ACCATGGTGTTGATGCAGGA 59.595 50.000 18.99 0.00 0.00 3.86
3427 3549 2.829120 GAGAAGTAGTGGAAGCAGAGGT 59.171 50.000 0.00 0.00 0.00 3.85
3456 3578 2.367202 GGGGACAGATCGGGAGCAA 61.367 63.158 0.00 0.00 0.00 3.91
3461 3583 1.227350 CAGATCGGGAGCAATCGCA 60.227 57.895 0.00 0.00 42.27 5.10
3462 3584 1.227380 AGATCGGGAGCAATCGCAC 60.227 57.895 0.00 0.00 42.27 5.34
3464 3586 0.032130 GATCGGGAGCAATCGCACTA 59.968 55.000 0.00 0.00 42.27 2.74
3471 3593 1.084370 AGCAATCGCACTAAGACGCC 61.084 55.000 0.00 0.00 42.27 5.68
3475 3597 4.077184 CGCACTAAGACGCCCCCA 62.077 66.667 0.00 0.00 0.00 4.96
3510 3633 3.131400 GTCGTTCTTCTAGGCAGGATCTT 59.869 47.826 0.00 0.00 0.00 2.40
3511 3634 3.381908 TCGTTCTTCTAGGCAGGATCTTC 59.618 47.826 0.00 0.00 0.00 2.87
3514 3637 5.679601 GTTCTTCTAGGCAGGATCTTCAAT 58.320 41.667 0.00 0.00 0.00 2.57
3526 3649 3.308402 GGATCTTCAATGACAGGGTTCCA 60.308 47.826 0.00 0.00 0.00 3.53
3533 3656 0.842030 TGACAGGGTTCCAGAGGCAT 60.842 55.000 0.00 0.00 0.00 4.40
3599 3722 1.378250 GGAAGCAGCACAGGCAGAT 60.378 57.895 0.00 0.00 44.61 2.90
3603 3726 0.034380 AGCAGCACAGGCAGATGAAT 60.034 50.000 0.00 0.00 44.61 2.57
3624 3747 3.589951 AGTAGATGACGGCTAGGGTTA 57.410 47.619 0.00 0.00 0.00 2.85
3627 3750 2.679082 AGATGACGGCTAGGGTTATGT 58.321 47.619 0.00 0.00 0.00 2.29
3628 3751 3.840991 AGATGACGGCTAGGGTTATGTA 58.159 45.455 0.00 0.00 0.00 2.29
3633 3756 2.091444 ACGGCTAGGGTTATGTAGGAGT 60.091 50.000 0.00 0.00 0.00 3.85
3643 3766 4.142138 GGTTATGTAGGAGTGAGTGAGTGG 60.142 50.000 0.00 0.00 0.00 4.00
3660 3788 1.003233 GTGGGTTAGGGTTCACTCCAG 59.997 57.143 0.00 0.00 0.00 3.86
3661 3789 1.132657 TGGGTTAGGGTTCACTCCAGA 60.133 52.381 0.00 0.00 0.00 3.86
3662 3790 1.982958 GGGTTAGGGTTCACTCCAGAA 59.017 52.381 0.00 0.00 0.00 3.02
3673 3801 1.078567 CTCCAGAAGCCAGTGCCTC 60.079 63.158 0.00 0.00 38.69 4.70
3683 3811 4.133526 AGCCAGTGCCTCCTTATATAGA 57.866 45.455 0.00 0.00 38.69 1.98
3689 3817 3.079578 TGCCTCCTTATATAGACCGTCG 58.920 50.000 0.00 0.00 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.156256 ACCTGTCCTTGTTAGTATAGCATTGA 59.844 38.462 0.00 0.00 29.90 2.57
78 79 1.089123 TGCCCCAATAAGAAACCCCT 58.911 50.000 0.00 0.00 0.00 4.79
81 82 2.567169 AGCTTTGCCCCAATAAGAAACC 59.433 45.455 0.00 0.00 0.00 3.27
86 87 3.430790 GGCTAAAGCTTTGCCCCAATAAG 60.431 47.826 28.19 15.14 40.71 1.73
142 143 6.868339 GGTGAAATGGTTTTCTAGAAACATGG 59.132 38.462 17.51 0.00 41.54 3.66
219 220 5.708697 TCTGACTAACGTCTCACATTTAGGA 59.291 40.000 0.00 0.00 40.86 2.94
307 308 2.820059 ACGCTCATCAACTGTCTTGA 57.180 45.000 0.00 0.00 0.00 3.02
353 354 0.552848 AGATGGACCCAATTGCCGAT 59.447 50.000 0.00 0.00 0.00 4.18
407 408 0.250209 TCCTACTCTAGGCGCTACCG 60.250 60.000 7.64 0.00 45.82 4.02
416 417 1.757699 GCACACCCCTTCCTACTCTAG 59.242 57.143 0.00 0.00 0.00 2.43
436 437 1.811266 CAACCTCATGACCGAGCCG 60.811 63.158 0.00 0.00 0.00 5.52
444 445 0.394762 GCTGCCCATCAACCTCATGA 60.395 55.000 0.00 0.00 0.00 3.07
446 447 1.076485 GGCTGCCCATCAACCTCAT 60.076 57.895 7.66 0.00 0.00 2.90
609 613 3.175594 ACAACCCATTCCAGCATTTCAT 58.824 40.909 0.00 0.00 0.00 2.57
615 619 1.303236 CGGACAACCCATTCCAGCA 60.303 57.895 0.00 0.00 34.14 4.41
619 623 1.743995 CCGTCGGACAACCCATTCC 60.744 63.158 4.91 0.00 34.14 3.01
638 642 1.135527 CGACGGCTATGGTAAACTGGA 59.864 52.381 0.00 0.00 0.00 3.86
656 660 7.116075 ACTACTATTACATAGGCCAAAACGA 57.884 36.000 5.01 0.00 37.18 3.85
671 675 9.021807 GCCCTGATGTTCTATGTACTACTATTA 57.978 37.037 0.00 0.00 0.00 0.98
674 678 5.773680 GGCCCTGATGTTCTATGTACTACTA 59.226 44.000 0.00 0.00 0.00 1.82
677 681 4.552674 TGGCCCTGATGTTCTATGTACTA 58.447 43.478 0.00 0.00 0.00 1.82
681 685 1.492176 CCTGGCCCTGATGTTCTATGT 59.508 52.381 0.00 0.00 0.00 2.29
691 695 0.329261 CTGTCAAATCCTGGCCCTGA 59.671 55.000 0.00 0.00 0.00 3.86
715 719 5.263968 ACCGTTGGATCTTCTGTATACAG 57.736 43.478 24.37 24.37 45.08 2.74
720 724 5.988310 TTCTAACCGTTGGATCTTCTGTA 57.012 39.130 0.00 0.00 0.00 2.74
749 753 2.691526 TCTAGCCGTCGGTTCACAATAT 59.308 45.455 13.94 0.00 0.00 1.28
784 789 1.227409 GCCTAAAGCGAGCCCTCTC 60.227 63.158 0.00 0.00 35.99 3.20
822 827 7.441890 TCCATGCGATTACAAACTCTTTAAA 57.558 32.000 0.00 0.00 0.00 1.52
823 828 7.624360 ATCCATGCGATTACAAACTCTTTAA 57.376 32.000 0.00 0.00 0.00 1.52
824 829 8.725405 TTATCCATGCGATTACAAACTCTTTA 57.275 30.769 2.58 0.00 31.92 1.85
825 830 7.624360 TTATCCATGCGATTACAAACTCTTT 57.376 32.000 2.58 0.00 31.92 2.52
826 831 7.120579 TGTTTATCCATGCGATTACAAACTCTT 59.879 33.333 14.94 0.00 31.92 2.85
827 832 6.597672 TGTTTATCCATGCGATTACAAACTCT 59.402 34.615 14.94 0.00 31.92 3.24
828 833 6.781138 TGTTTATCCATGCGATTACAAACTC 58.219 36.000 14.94 0.00 31.92 3.01
829 834 6.751514 TGTTTATCCATGCGATTACAAACT 57.248 33.333 14.94 0.00 31.92 2.66
830 835 7.662761 GTTTGTTTATCCATGCGATTACAAAC 58.337 34.615 25.93 25.93 45.51 2.93
831 836 7.371159 TGTTTGTTTATCCATGCGATTACAAA 58.629 30.769 19.30 19.30 39.47 2.83
832 837 6.914259 TGTTTGTTTATCCATGCGATTACAA 58.086 32.000 13.89 13.89 34.80 2.41
833 838 6.502136 TGTTTGTTTATCCATGCGATTACA 57.498 33.333 2.58 5.38 31.92 2.41
834 839 7.985634 AATGTTTGTTTATCCATGCGATTAC 57.014 32.000 2.58 3.41 31.92 1.89
836 841 9.248291 GATTAATGTTTGTTTATCCATGCGATT 57.752 29.630 0.00 0.00 31.92 3.34
837 842 7.591057 CGATTAATGTTTGTTTATCCATGCGAT 59.409 33.333 0.00 0.00 34.73 4.58
838 843 6.909895 CGATTAATGTTTGTTTATCCATGCGA 59.090 34.615 0.00 0.00 0.00 5.10
839 844 6.690957 ACGATTAATGTTTGTTTATCCATGCG 59.309 34.615 0.00 0.00 0.00 4.73
840 845 7.985634 ACGATTAATGTTTGTTTATCCATGC 57.014 32.000 0.00 0.00 0.00 4.06
880 885 9.810545 CAAAACTTTCCTAAAACAATTCCTACA 57.189 29.630 0.00 0.00 0.00 2.74
883 888 8.977412 TCTCAAAACTTTCCTAAAACAATTCCT 58.023 29.630 0.00 0.00 0.00 3.36
884 889 9.594478 TTCTCAAAACTTTCCTAAAACAATTCC 57.406 29.630 0.00 0.00 0.00 3.01
891 896 9.730420 CGATTTCTTCTCAAAACTTTCCTAAAA 57.270 29.630 0.00 0.00 0.00 1.52
892 897 8.349983 CCGATTTCTTCTCAAAACTTTCCTAAA 58.650 33.333 0.00 0.00 0.00 1.85
893 898 7.717875 TCCGATTTCTTCTCAAAACTTTCCTAA 59.282 33.333 0.00 0.00 0.00 2.69
894 899 7.221450 TCCGATTTCTTCTCAAAACTTTCCTA 58.779 34.615 0.00 0.00 0.00 2.94
895 900 6.062095 TCCGATTTCTTCTCAAAACTTTCCT 58.938 36.000 0.00 0.00 0.00 3.36
896 901 6.313744 TCCGATTTCTTCTCAAAACTTTCC 57.686 37.500 0.00 0.00 0.00 3.13
897 902 8.694394 CAATTCCGATTTCTTCTCAAAACTTTC 58.306 33.333 0.00 0.00 0.00 2.62
898 903 8.197439 ACAATTCCGATTTCTTCTCAAAACTTT 58.803 29.630 0.00 0.00 0.00 2.66
899 904 7.716612 ACAATTCCGATTTCTTCTCAAAACTT 58.283 30.769 0.00 0.00 0.00 2.66
900 905 7.277174 ACAATTCCGATTTCTTCTCAAAACT 57.723 32.000 0.00 0.00 0.00 2.66
901 906 7.930513 AACAATTCCGATTTCTTCTCAAAAC 57.069 32.000 0.00 0.00 0.00 2.43
902 907 7.437862 CCAAACAATTCCGATTTCTTCTCAAAA 59.562 33.333 0.00 0.00 0.00 2.44
903 908 6.922957 CCAAACAATTCCGATTTCTTCTCAAA 59.077 34.615 0.00 0.00 0.00 2.69
904 909 6.446318 CCAAACAATTCCGATTTCTTCTCAA 58.554 36.000 0.00 0.00 0.00 3.02
905 910 5.048083 CCCAAACAATTCCGATTTCTTCTCA 60.048 40.000 0.00 0.00 0.00 3.27
906 911 5.183140 TCCCAAACAATTCCGATTTCTTCTC 59.817 40.000 0.00 0.00 0.00 2.87
907 912 5.076873 TCCCAAACAATTCCGATTTCTTCT 58.923 37.500 0.00 0.00 0.00 2.85
908 913 5.385509 TCCCAAACAATTCCGATTTCTTC 57.614 39.130 0.00 0.00 0.00 2.87
909 914 5.538433 TCTTCCCAAACAATTCCGATTTCTT 59.462 36.000 0.00 0.00 0.00 2.52
910 915 5.076873 TCTTCCCAAACAATTCCGATTTCT 58.923 37.500 0.00 0.00 0.00 2.52
911 916 5.183140 TCTCTTCCCAAACAATTCCGATTTC 59.817 40.000 0.00 0.00 0.00 2.17
912 917 5.076873 TCTCTTCCCAAACAATTCCGATTT 58.923 37.500 0.00 0.00 0.00 2.17
913 918 4.662278 TCTCTTCCCAAACAATTCCGATT 58.338 39.130 0.00 0.00 0.00 3.34
914 919 4.301072 TCTCTTCCCAAACAATTCCGAT 57.699 40.909 0.00 0.00 0.00 4.18
915 920 3.780804 TCTCTTCCCAAACAATTCCGA 57.219 42.857 0.00 0.00 0.00 4.55
916 921 3.364964 CGTTCTCTTCCCAAACAATTCCG 60.365 47.826 0.00 0.00 0.00 4.30
917 922 3.568430 ACGTTCTCTTCCCAAACAATTCC 59.432 43.478 0.00 0.00 0.00 3.01
918 923 4.515567 AGACGTTCTCTTCCCAAACAATTC 59.484 41.667 0.00 0.00 0.00 2.17
919 924 4.461198 AGACGTTCTCTTCCCAAACAATT 58.539 39.130 0.00 0.00 0.00 2.32
920 925 4.086706 AGACGTTCTCTTCCCAAACAAT 57.913 40.909 0.00 0.00 0.00 2.71
921 926 3.553828 AGACGTTCTCTTCCCAAACAA 57.446 42.857 0.00 0.00 0.00 2.83
937 942 5.027206 TCCGCGTAGAGAAATAATAGACG 57.973 43.478 4.92 0.00 0.00 4.18
941 946 7.444629 AGTGTATCCGCGTAGAGAAATAATA 57.555 36.000 4.92 0.00 0.00 0.98
942 947 6.328641 AGTGTATCCGCGTAGAGAAATAAT 57.671 37.500 4.92 0.00 0.00 1.28
1501 1543 0.247460 GCTTGATTCCCAACAAGGCC 59.753 55.000 0.00 0.00 42.26 5.19
1764 1840 1.679311 GATGTGGGTGAGGTGCAGA 59.321 57.895 0.00 0.00 0.00 4.26
1767 1843 1.078143 GAGGATGTGGGTGAGGTGC 60.078 63.158 0.00 0.00 0.00 5.01
1784 1860 0.394488 ATGCTCCTCCTCGTCTTCGA 60.394 55.000 0.00 0.00 44.12 3.71
1876 1955 0.244178 GTGTTGTCGAGGAGGGAGAC 59.756 60.000 0.00 0.00 35.61 3.36
2000 2082 2.786495 CCCACGGTGAGGATCGAGG 61.786 68.421 10.28 0.00 38.61 4.63
2263 2373 2.959071 GAGGATGCTGCTCGTCGC 60.959 66.667 0.00 0.00 39.77 5.19
2364 2486 1.807886 GTAGGCGTGGTGATCGAGT 59.192 57.895 0.00 0.00 0.00 4.18
2544 2666 0.693049 AGAATCTGGCCAACGTCCTT 59.307 50.000 7.01 0.00 0.00 3.36
2577 2699 5.111989 CAATAGAGATTCTCAAGAACGGCA 58.888 41.667 15.83 0.00 36.80 5.69
2586 2708 3.181465 GGAACCCGCAATAGAGATTCTCA 60.181 47.826 15.83 2.79 32.06 3.27
2626 2748 1.950472 CGCATCAACTCCGTTTGAAC 58.050 50.000 0.00 0.00 38.95 3.18
2633 2755 1.589993 ATCTCGCGCATCAACTCCG 60.590 57.895 8.75 0.00 0.00 4.63
2646 2768 1.221840 CACCCACCCTTCCATCTCG 59.778 63.158 0.00 0.00 0.00 4.04
2658 2780 0.685097 TTAGCTCACTGACCACCCAC 59.315 55.000 0.00 0.00 0.00 4.61
2677 2799 0.532862 CAACGGAACTCTGTGCTGGT 60.533 55.000 0.00 0.00 35.26 4.00
2681 2803 0.798776 CCATCAACGGAACTCTGTGC 59.201 55.000 0.00 0.00 35.26 4.57
2684 2806 1.667724 GCATCCATCAACGGAACTCTG 59.332 52.381 0.00 0.00 38.95 3.35
2711 2833 0.392336 TTGTTGCAATTGGACCCTGC 59.608 50.000 0.59 3.87 36.60 4.85
2712 2834 1.411977 TGTTGTTGCAATTGGACCCTG 59.588 47.619 0.59 0.00 0.00 4.45
2713 2835 1.786937 TGTTGTTGCAATTGGACCCT 58.213 45.000 0.59 0.00 0.00 4.34
2714 2836 2.209273 GTTGTTGTTGCAATTGGACCC 58.791 47.619 0.59 0.00 0.00 4.46
2715 2837 2.898705 TGTTGTTGTTGCAATTGGACC 58.101 42.857 0.59 0.00 0.00 4.46
2716 2838 3.932089 AGTTGTTGTTGTTGCAATTGGAC 59.068 39.130 0.59 0.00 0.00 4.02
2717 2839 4.199432 AGTTGTTGTTGTTGCAATTGGA 57.801 36.364 0.59 0.23 0.00 3.53
2718 2840 5.752472 TGATAGTTGTTGTTGTTGCAATTGG 59.248 36.000 0.59 0.00 0.00 3.16
2719 2841 6.825284 TGATAGTTGTTGTTGTTGCAATTG 57.175 33.333 0.59 0.00 0.00 2.32
2720 2842 7.264221 TCTTGATAGTTGTTGTTGTTGCAATT 58.736 30.769 0.59 0.00 0.00 2.32
2721 2843 6.804677 TCTTGATAGTTGTTGTTGTTGCAAT 58.195 32.000 0.59 0.00 0.00 3.56
2722 2844 6.201226 TCTTGATAGTTGTTGTTGTTGCAA 57.799 33.333 0.00 0.00 0.00 4.08
2723 2845 5.826601 TCTTGATAGTTGTTGTTGTTGCA 57.173 34.783 0.00 0.00 0.00 4.08
2724 2846 7.518731 TTTTCTTGATAGTTGTTGTTGTTGC 57.481 32.000 0.00 0.00 0.00 4.17
2746 2868 2.812011 CACGAATCCTCCCGAAGTTTTT 59.188 45.455 0.00 0.00 0.00 1.94
2747 2869 2.038033 TCACGAATCCTCCCGAAGTTTT 59.962 45.455 0.00 0.00 0.00 2.43
2748 2870 1.621814 TCACGAATCCTCCCGAAGTTT 59.378 47.619 0.00 0.00 0.00 2.66
2749 2871 1.067071 GTCACGAATCCTCCCGAAGTT 60.067 52.381 0.00 0.00 0.00 2.66
2750 2872 0.531200 GTCACGAATCCTCCCGAAGT 59.469 55.000 0.00 0.00 0.00 3.01
2751 2873 0.530744 TGTCACGAATCCTCCCGAAG 59.469 55.000 0.00 0.00 0.00 3.79
2752 2874 1.191535 ATGTCACGAATCCTCCCGAA 58.808 50.000 0.00 0.00 0.00 4.30
2753 2875 1.191535 AATGTCACGAATCCTCCCGA 58.808 50.000 0.00 0.00 0.00 5.14
2754 2876 1.933853 GAAATGTCACGAATCCTCCCG 59.066 52.381 0.00 0.00 0.00 5.14
2755 2877 2.985896 TGAAATGTCACGAATCCTCCC 58.014 47.619 0.00 0.00 0.00 4.30
2756 2878 4.635765 TGATTGAAATGTCACGAATCCTCC 59.364 41.667 0.00 0.00 31.90 4.30
2757 2879 5.801350 TGATTGAAATGTCACGAATCCTC 57.199 39.130 0.00 0.00 31.90 3.71
2758 2880 6.118170 AGATGATTGAAATGTCACGAATCCT 58.882 36.000 0.00 0.00 31.90 3.24
2759 2881 6.369059 AGATGATTGAAATGTCACGAATCC 57.631 37.500 0.00 0.00 31.90 3.01
2760 2882 7.253552 GCAAAGATGATTGAAATGTCACGAATC 60.254 37.037 0.00 0.00 31.90 2.52
2761 2883 6.529125 GCAAAGATGATTGAAATGTCACGAAT 59.471 34.615 0.00 0.00 31.90 3.34
2762 2884 5.858049 GCAAAGATGATTGAAATGTCACGAA 59.142 36.000 0.00 0.00 31.90 3.85
2763 2885 5.181811 AGCAAAGATGATTGAAATGTCACGA 59.818 36.000 0.00 0.00 31.90 4.35
2764 2886 5.396484 AGCAAAGATGATTGAAATGTCACG 58.604 37.500 0.00 0.00 31.90 4.35
2765 2887 8.922058 AATAGCAAAGATGATTGAAATGTCAC 57.078 30.769 0.00 0.00 31.90 3.67
2766 2888 9.932207 AAAATAGCAAAGATGATTGAAATGTCA 57.068 25.926 0.00 0.00 31.84 3.58
2774 2896 9.485591 GCAATTGAAAAATAGCAAAGATGATTG 57.514 29.630 10.34 0.00 0.00 2.67
2775 2897 9.444600 AGCAATTGAAAAATAGCAAAGATGATT 57.555 25.926 10.34 0.00 0.00 2.57
2776 2898 9.095065 GAGCAATTGAAAAATAGCAAAGATGAT 57.905 29.630 10.34 0.00 0.00 2.45
2777 2899 7.274033 CGAGCAATTGAAAAATAGCAAAGATGA 59.726 33.333 10.34 0.00 0.00 2.92
2778 2900 7.274033 TCGAGCAATTGAAAAATAGCAAAGATG 59.726 33.333 10.34 0.00 0.00 2.90
2779 2901 7.315142 TCGAGCAATTGAAAAATAGCAAAGAT 58.685 30.769 10.34 0.00 0.00 2.40
2780 2902 6.676950 TCGAGCAATTGAAAAATAGCAAAGA 58.323 32.000 10.34 0.00 0.00 2.52
2781 2903 6.932901 TCGAGCAATTGAAAAATAGCAAAG 57.067 33.333 10.34 0.00 0.00 2.77
2782 2904 7.089538 TCATCGAGCAATTGAAAAATAGCAAA 58.910 30.769 10.34 0.00 0.00 3.68
2783 2905 6.619744 TCATCGAGCAATTGAAAAATAGCAA 58.380 32.000 10.34 0.00 0.00 3.91
2784 2906 6.193514 TCATCGAGCAATTGAAAAATAGCA 57.806 33.333 10.34 0.00 0.00 3.49
2785 2907 6.749118 AGTTCATCGAGCAATTGAAAAATAGC 59.251 34.615 10.34 0.00 31.66 2.97
2786 2908 8.679288 AAGTTCATCGAGCAATTGAAAAATAG 57.321 30.769 10.34 0.00 31.66 1.73
2787 2909 8.914654 CAAAGTTCATCGAGCAATTGAAAAATA 58.085 29.630 10.34 0.00 31.66 1.40
2788 2910 7.569957 GCAAAGTTCATCGAGCAATTGAAAAAT 60.570 33.333 10.34 0.00 31.66 1.82
2789 2911 6.292274 GCAAAGTTCATCGAGCAATTGAAAAA 60.292 34.615 10.34 0.00 31.66 1.94
2790 2912 5.175491 GCAAAGTTCATCGAGCAATTGAAAA 59.825 36.000 10.34 0.00 31.66 2.29
2791 2913 4.681025 GCAAAGTTCATCGAGCAATTGAAA 59.319 37.500 10.34 0.00 31.66 2.69
2792 2914 4.022935 AGCAAAGTTCATCGAGCAATTGAA 60.023 37.500 10.34 0.00 0.00 2.69
2793 2915 3.503363 AGCAAAGTTCATCGAGCAATTGA 59.497 39.130 10.34 0.00 0.00 2.57
2794 2916 3.829948 AGCAAAGTTCATCGAGCAATTG 58.170 40.909 0.00 0.00 0.00 2.32
2795 2917 4.479619 GAAGCAAAGTTCATCGAGCAATT 58.520 39.130 0.00 0.00 0.00 2.32
2796 2918 3.425359 CGAAGCAAAGTTCATCGAGCAAT 60.425 43.478 0.00 0.00 35.65 3.56
2797 2919 2.096268 CGAAGCAAAGTTCATCGAGCAA 60.096 45.455 0.00 0.00 35.65 3.91
2798 2920 1.460743 CGAAGCAAAGTTCATCGAGCA 59.539 47.619 0.00 0.00 35.65 4.26
2799 2921 1.461127 ACGAAGCAAAGTTCATCGAGC 59.539 47.619 0.07 0.00 37.27 5.03
2800 2922 3.673338 TGTACGAAGCAAAGTTCATCGAG 59.327 43.478 0.07 0.00 37.27 4.04
2801 2923 3.644823 TGTACGAAGCAAAGTTCATCGA 58.355 40.909 0.07 0.00 37.27 3.59
2802 2924 3.722082 GCTGTACGAAGCAAAGTTCATCG 60.722 47.826 0.49 0.00 43.01 3.84
2803 2925 3.424962 GGCTGTACGAAGCAAAGTTCATC 60.425 47.826 7.43 0.00 45.43 2.92
2804 2926 2.484264 GGCTGTACGAAGCAAAGTTCAT 59.516 45.455 7.43 0.00 45.43 2.57
2805 2927 1.871039 GGCTGTACGAAGCAAAGTTCA 59.129 47.619 7.43 0.00 45.43 3.18
2806 2928 1.197036 GGGCTGTACGAAGCAAAGTTC 59.803 52.381 7.43 0.00 45.43 3.01
2807 2929 1.235724 GGGCTGTACGAAGCAAAGTT 58.764 50.000 7.43 0.00 45.43 2.66
2808 2930 0.605589 GGGGCTGTACGAAGCAAAGT 60.606 55.000 7.43 0.00 45.43 2.66
2809 2931 0.321653 AGGGGCTGTACGAAGCAAAG 60.322 55.000 7.43 0.00 45.43 2.77
2810 2932 0.109723 AAGGGGCTGTACGAAGCAAA 59.890 50.000 7.43 0.00 45.43 3.68
2811 2933 0.109723 AAAGGGGCTGTACGAAGCAA 59.890 50.000 7.43 0.00 45.43 3.91
2812 2934 0.978151 TAAAGGGGCTGTACGAAGCA 59.022 50.000 7.43 0.00 45.43 3.91
2813 2935 2.103537 TTAAAGGGGCTGTACGAAGC 57.896 50.000 0.00 0.00 42.75 3.86
2814 2936 3.869065 TGATTAAAGGGGCTGTACGAAG 58.131 45.455 0.00 0.00 0.00 3.79
2815 2937 3.985019 TGATTAAAGGGGCTGTACGAA 57.015 42.857 0.00 0.00 0.00 3.85
2816 2938 3.985019 TTGATTAAAGGGGCTGTACGA 57.015 42.857 0.00 0.00 0.00 3.43
2817 2939 4.981794 CTTTTGATTAAAGGGGCTGTACG 58.018 43.478 0.00 0.00 39.68 3.67
2827 2949 6.940298 TCCTAGACACACCCTTTTGATTAAAG 59.060 38.462 0.00 0.00 42.41 1.85
2828 2950 6.713450 GTCCTAGACACACCCTTTTGATTAAA 59.287 38.462 0.00 0.00 32.09 1.52
2829 2951 6.183361 TGTCCTAGACACACCCTTTTGATTAA 60.183 38.462 0.00 0.00 37.67 1.40
2830 2952 5.308497 TGTCCTAGACACACCCTTTTGATTA 59.692 40.000 0.00 0.00 37.67 1.75
2831 2953 4.104102 TGTCCTAGACACACCCTTTTGATT 59.896 41.667 0.00 0.00 37.67 2.57
2832 2954 3.650942 TGTCCTAGACACACCCTTTTGAT 59.349 43.478 0.00 0.00 37.67 2.57
2833 2955 3.042682 TGTCCTAGACACACCCTTTTGA 58.957 45.455 0.00 0.00 37.67 2.69
2834 2956 3.485463 TGTCCTAGACACACCCTTTTG 57.515 47.619 0.00 0.00 37.67 2.44
2855 2977 8.543862 TGCAATAATTAGAGCACATCTAGATG 57.456 34.615 27.63 27.63 41.57 2.90
2865 2987 7.986889 TCACTTAGATGTGCAATAATTAGAGCA 59.013 33.333 9.76 9.76 37.81 4.26
2866 2988 8.370493 TCACTTAGATGTGCAATAATTAGAGC 57.630 34.615 0.00 5.27 37.81 4.09
2867 2989 9.539825 ACTCACTTAGATGTGCAATAATTAGAG 57.460 33.333 0.00 0.00 37.81 2.43
2868 2990 9.317936 CACTCACTTAGATGTGCAATAATTAGA 57.682 33.333 0.00 0.00 37.81 2.10
2869 2991 9.317936 TCACTCACTTAGATGTGCAATAATTAG 57.682 33.333 0.00 0.00 37.81 1.73
2870 2992 9.665719 TTCACTCACTTAGATGTGCAATAATTA 57.334 29.630 0.00 0.00 37.81 1.40
2871 2993 8.565896 TTCACTCACTTAGATGTGCAATAATT 57.434 30.769 0.00 0.00 37.81 1.40
2872 2994 8.743085 ATTCACTCACTTAGATGTGCAATAAT 57.257 30.769 0.00 0.00 37.81 1.28
2873 2995 9.665719 TTATTCACTCACTTAGATGTGCAATAA 57.334 29.630 0.00 0.00 37.81 1.40
2874 2996 9.665719 TTTATTCACTCACTTAGATGTGCAATA 57.334 29.630 0.00 0.00 37.81 1.90
2875 2997 8.565896 TTTATTCACTCACTTAGATGTGCAAT 57.434 30.769 0.00 0.00 37.81 3.56
2876 2998 7.361201 GCTTTATTCACTCACTTAGATGTGCAA 60.361 37.037 0.00 0.00 37.81 4.08
2877 2999 6.092670 GCTTTATTCACTCACTTAGATGTGCA 59.907 38.462 0.00 0.00 37.81 4.57
2878 3000 6.092670 TGCTTTATTCACTCACTTAGATGTGC 59.907 38.462 0.00 0.00 37.81 4.57
2879 3001 7.601073 TGCTTTATTCACTCACTTAGATGTG 57.399 36.000 0.00 0.00 39.15 3.21
2880 3002 9.890629 TTATGCTTTATTCACTCACTTAGATGT 57.109 29.630 0.00 0.00 0.00 3.06
2886 3008 9.507329 TTCTCTTTATGCTTTATTCACTCACTT 57.493 29.630 0.00 0.00 0.00 3.16
2887 3009 9.507329 TTTCTCTTTATGCTTTATTCACTCACT 57.493 29.630 0.00 0.00 0.00 3.41
2918 3040 9.898152 TTGTGTGGATATTTCCTTTTTCTTTTT 57.102 25.926 3.72 0.00 43.07 1.94
2919 3041 9.898152 TTTGTGTGGATATTTCCTTTTTCTTTT 57.102 25.926 3.72 0.00 43.07 2.27
2921 3043 9.710900 GATTTGTGTGGATATTTCCTTTTTCTT 57.289 29.630 3.72 0.00 43.07 2.52
2922 3044 8.869109 TGATTTGTGTGGATATTTCCTTTTTCT 58.131 29.630 3.72 0.00 43.07 2.52
2923 3045 8.925700 GTGATTTGTGTGGATATTTCCTTTTTC 58.074 33.333 3.72 0.00 43.07 2.29
2924 3046 7.598493 CGTGATTTGTGTGGATATTTCCTTTTT 59.402 33.333 3.72 0.00 43.07 1.94
2925 3047 7.040062 TCGTGATTTGTGTGGATATTTCCTTTT 60.040 33.333 3.72 0.00 43.07 2.27
2926 3048 6.432783 TCGTGATTTGTGTGGATATTTCCTTT 59.567 34.615 3.72 0.00 43.07 3.11
2927 3049 5.943416 TCGTGATTTGTGTGGATATTTCCTT 59.057 36.000 3.72 0.00 43.07 3.36
2928 3050 5.354234 GTCGTGATTTGTGTGGATATTTCCT 59.646 40.000 3.72 0.00 43.07 3.36
2929 3051 5.569413 GTCGTGATTTGTGTGGATATTTCC 58.431 41.667 0.00 0.00 42.94 3.13
2930 3052 5.163893 ACGTCGTGATTTGTGTGGATATTTC 60.164 40.000 0.00 0.00 0.00 2.17
2931 3053 4.693566 ACGTCGTGATTTGTGTGGATATTT 59.306 37.500 0.00 0.00 0.00 1.40
2932 3054 4.250464 ACGTCGTGATTTGTGTGGATATT 58.750 39.130 0.00 0.00 0.00 1.28
2933 3055 3.857052 ACGTCGTGATTTGTGTGGATAT 58.143 40.909 0.00 0.00 0.00 1.63
2934 3056 3.306917 ACGTCGTGATTTGTGTGGATA 57.693 42.857 0.00 0.00 0.00 2.59
2935 3057 2.163818 ACGTCGTGATTTGTGTGGAT 57.836 45.000 0.00 0.00 0.00 3.41
2936 3058 2.797074 TACGTCGTGATTTGTGTGGA 57.203 45.000 8.47 0.00 0.00 4.02
2937 3059 3.054166 TCTTACGTCGTGATTTGTGTGG 58.946 45.455 8.47 0.00 0.00 4.17
2938 3060 4.903638 ATCTTACGTCGTGATTTGTGTG 57.096 40.909 8.47 0.00 0.00 3.82
2939 3061 7.329962 TCATTAATCTTACGTCGTGATTTGTGT 59.670 33.333 14.04 0.00 33.24 3.72
2940 3062 7.630987 GTCATTAATCTTACGTCGTGATTTGTG 59.369 37.037 14.04 12.84 33.24 3.33
2941 3063 7.329962 TGTCATTAATCTTACGTCGTGATTTGT 59.670 33.333 14.04 3.90 33.24 2.83
2942 3064 7.671827 TGTCATTAATCTTACGTCGTGATTTG 58.328 34.615 14.04 9.02 33.24 2.32
2943 3065 7.821595 TGTCATTAATCTTACGTCGTGATTT 57.178 32.000 14.04 4.17 33.24 2.17
2944 3066 9.181805 CTATGTCATTAATCTTACGTCGTGATT 57.818 33.333 8.47 11.63 35.08 2.57
2945 3067 8.565416 TCTATGTCATTAATCTTACGTCGTGAT 58.435 33.333 8.47 0.00 0.00 3.06
2946 3068 7.922837 TCTATGTCATTAATCTTACGTCGTGA 58.077 34.615 8.47 0.00 0.00 4.35
2947 3069 8.469902 GTTCTATGTCATTAATCTTACGTCGTG 58.530 37.037 8.47 0.00 0.00 4.35
2948 3070 8.404000 AGTTCTATGTCATTAATCTTACGTCGT 58.596 33.333 2.21 2.21 0.00 4.34
2949 3071 8.783999 AGTTCTATGTCATTAATCTTACGTCG 57.216 34.615 0.00 0.00 0.00 5.12
2958 3080 9.836864 TGCACATCTAAGTTCTATGTCATTAAT 57.163 29.630 0.00 0.00 31.60 1.40
2959 3081 9.665719 TTGCACATCTAAGTTCTATGTCATTAA 57.334 29.630 0.00 0.00 31.60 1.40
2960 3082 9.836864 ATTGCACATCTAAGTTCTATGTCATTA 57.163 29.630 0.00 0.00 31.60 1.90
2961 3083 8.743085 ATTGCACATCTAAGTTCTATGTCATT 57.257 30.769 0.00 0.00 31.60 2.57
2962 3084 9.265901 GTATTGCACATCTAAGTTCTATGTCAT 57.734 33.333 0.00 0.00 31.60 3.06
2963 3085 8.478066 AGTATTGCACATCTAAGTTCTATGTCA 58.522 33.333 0.00 1.51 31.60 3.58
2964 3086 8.879342 AGTATTGCACATCTAAGTTCTATGTC 57.121 34.615 0.00 0.00 31.60 3.06
2968 3090 9.764363 CCATAAGTATTGCACATCTAAGTTCTA 57.236 33.333 0.00 0.00 0.00 2.10
2969 3091 7.227512 GCCATAAGTATTGCACATCTAAGTTCT 59.772 37.037 0.00 0.00 0.00 3.01
2970 3092 7.012327 TGCCATAAGTATTGCACATCTAAGTTC 59.988 37.037 0.00 0.00 30.49 3.01
2971 3093 6.828273 TGCCATAAGTATTGCACATCTAAGTT 59.172 34.615 0.00 0.00 30.49 2.66
2972 3094 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
2973 3095 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
2981 3103 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
2982 3104 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
2997 3119 8.671921 ACAGTTTTGATAAAGCACATCTAGATG 58.328 33.333 27.63 27.63 44.15 2.90
2998 3120 8.798859 ACAGTTTTGATAAAGCACATCTAGAT 57.201 30.769 0.00 0.00 0.00 1.98
2999 3121 9.719355 TTACAGTTTTGATAAAGCACATCTAGA 57.281 29.630 0.00 0.00 0.00 2.43
3002 3124 9.013229 TGATTACAGTTTTGATAAAGCACATCT 57.987 29.630 0.00 0.00 0.00 2.90
3003 3125 9.624697 TTGATTACAGTTTTGATAAAGCACATC 57.375 29.630 0.00 0.00 0.00 3.06
3004 3126 9.979578 TTTGATTACAGTTTTGATAAAGCACAT 57.020 25.926 0.00 0.00 0.00 3.21
3005 3127 9.809096 TTTTGATTACAGTTTTGATAAAGCACA 57.191 25.926 0.00 0.00 0.00 4.57
3018 3140 9.582648 ACTGTATTACCCTTTTTGATTACAGTT 57.417 29.630 6.59 0.00 40.71 3.16
3019 3141 9.582648 AACTGTATTACCCTTTTTGATTACAGT 57.417 29.630 6.59 6.59 43.97 3.55
3070 3192 9.382275 GGCAACTTGTAATTTCCATCAAAATAT 57.618 29.630 0.00 0.00 0.00 1.28
3071 3193 8.770438 GGCAACTTGTAATTTCCATCAAAATA 57.230 30.769 0.00 0.00 0.00 1.40
3072 3194 7.671495 GGCAACTTGTAATTTCCATCAAAAT 57.329 32.000 0.00 0.00 0.00 1.82
3091 3213 4.202253 ACCCTTTTTGATTGAAGAGGCAAC 60.202 41.667 0.00 0.00 0.00 4.17
3092 3214 3.966665 ACCCTTTTTGATTGAAGAGGCAA 59.033 39.130 0.00 0.00 0.00 4.52
3093 3215 3.575805 ACCCTTTTTGATTGAAGAGGCA 58.424 40.909 0.00 0.00 0.00 4.75
3094 3216 5.722021 TTACCCTTTTTGATTGAAGAGGC 57.278 39.130 0.00 0.00 0.00 4.70
3095 3217 8.348285 TGTATTACCCTTTTTGATTGAAGAGG 57.652 34.615 0.00 0.00 0.00 3.69
3152 3274 5.371115 TTGCCATGCTTACTGTTTACTTC 57.629 39.130 0.00 0.00 0.00 3.01
3153 3275 5.476599 TGATTGCCATGCTTACTGTTTACTT 59.523 36.000 0.00 0.00 0.00 2.24
3187 3309 4.524714 ACATGCTTAGCTATCGGTATGAGT 59.475 41.667 18.82 3.72 0.00 3.41
3200 3322 1.640428 TACGTGCTCACATGCTTAGC 58.360 50.000 0.00 0.00 36.15 3.09
3232 3354 8.716646 ATATGTTGTGTTCATAGATGTTTCGA 57.283 30.769 0.00 0.00 32.43 3.71
3250 3372 6.345015 CGTTCATGTGCTAGTCGTATATGTTG 60.345 42.308 0.00 0.00 30.76 3.33
3261 3383 5.135508 AGTTTACTCGTTCATGTGCTAGT 57.864 39.130 0.00 0.00 0.00 2.57
3308 3430 2.033448 CGTTGGCCTGGCTAACCA 59.967 61.111 33.25 15.57 45.03 3.67
3363 3485 2.258013 CGCCGCCACCAAGAAGAAA 61.258 57.895 0.00 0.00 0.00 2.52
3383 3505 1.945819 GCATCAACACCATGGTCGACT 60.946 52.381 16.53 0.00 0.00 4.18
3388 3510 0.405198 TCCTGCATCAACACCATGGT 59.595 50.000 13.00 13.00 0.00 3.55
3398 3520 2.820178 TCCACTACTTCTCCTGCATCA 58.180 47.619 0.00 0.00 0.00 3.07
3407 3529 2.564947 CACCTCTGCTTCCACTACTTCT 59.435 50.000 0.00 0.00 0.00 2.85
3444 3566 1.227380 GTGCGATTGCTCCCGATCT 60.227 57.895 6.47 0.00 43.34 2.75
3456 3578 2.499685 GGGGCGTCTTAGTGCGAT 59.500 61.111 0.00 0.00 0.00 4.58
3481 3603 5.394224 CCTGCCTAGAAGAACGACAATAAGA 60.394 44.000 0.00 0.00 0.00 2.10
3489 3611 3.019799 AGATCCTGCCTAGAAGAACGA 57.980 47.619 0.00 0.00 0.00 3.85
3496 3618 4.033009 TGTCATTGAAGATCCTGCCTAGA 58.967 43.478 0.00 0.00 0.00 2.43
3498 3620 3.135348 CCTGTCATTGAAGATCCTGCCTA 59.865 47.826 0.00 0.00 0.00 3.93
3499 3621 2.092538 CCTGTCATTGAAGATCCTGCCT 60.093 50.000 0.00 0.00 0.00 4.75
3510 3633 1.630369 CCTCTGGAACCCTGTCATTGA 59.370 52.381 0.00 0.00 0.00 2.57
3511 3634 1.952367 GCCTCTGGAACCCTGTCATTG 60.952 57.143 0.00 0.00 0.00 2.82
3514 3637 0.842030 ATGCCTCTGGAACCCTGTCA 60.842 55.000 0.00 0.00 0.00 3.58
3526 3649 2.132996 CGGGAGAGCAGATGCCTCT 61.133 63.158 17.22 12.34 43.38 3.69
3595 3718 5.384063 AGCCGTCATCTACTATTCATCTG 57.616 43.478 0.00 0.00 0.00 2.90
3599 3722 4.079970 CCCTAGCCGTCATCTACTATTCA 58.920 47.826 0.00 0.00 0.00 2.57
3603 3726 3.589951 AACCCTAGCCGTCATCTACTA 57.410 47.619 0.00 0.00 0.00 1.82
3624 3747 2.225394 ACCCACTCACTCACTCCTACAT 60.225 50.000 0.00 0.00 0.00 2.29
3627 3750 2.696526 AACCCACTCACTCACTCCTA 57.303 50.000 0.00 0.00 0.00 2.94
3628 3751 2.530701 CTAACCCACTCACTCACTCCT 58.469 52.381 0.00 0.00 0.00 3.69
3633 3756 1.975680 GAACCCTAACCCACTCACTCA 59.024 52.381 0.00 0.00 0.00 3.41
3643 3766 2.615747 GCTTCTGGAGTGAACCCTAACC 60.616 54.545 0.00 0.00 0.00 2.85
3660 3788 3.778954 ATATAAGGAGGCACTGGCTTC 57.221 47.619 6.56 4.48 44.78 3.86
3661 3789 4.284746 GTCTATATAAGGAGGCACTGGCTT 59.715 45.833 6.56 0.00 41.55 4.35
3662 3790 3.835395 GTCTATATAAGGAGGCACTGGCT 59.165 47.826 4.44 4.44 41.55 4.75
3673 3801 4.836825 TCTACCCGACGGTCTATATAAGG 58.163 47.826 13.94 0.00 43.29 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.