Multiple sequence alignment - TraesCS3B01G493900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G493900 chr3B 100.000 2953 0 0 1 2953 739031913 739028961 0.000000e+00 5454.0
1 TraesCS3B01G493900 chr3B 80.952 315 56 4 1114 1426 739957707 739957395 2.270000e-61 246.0
2 TraesCS3B01G493900 chr3B 80.615 325 55 8 1114 1434 739951449 739951129 8.180000e-61 244.0
3 TraesCS3B01G493900 chr3B 79.299 314 55 8 1114 1423 739926109 739925802 8.290000e-51 211.0
4 TraesCS3B01G493900 chr3B 78.730 315 63 4 1114 1426 739932931 739932619 1.070000e-49 207.0
5 TraesCS3B01G493900 chr3A 88.737 1172 80 29 871 1997 692964542 692963378 0.000000e+00 1386.0
6 TraesCS3B01G493900 chr3A 90.517 580 32 10 2210 2769 692963155 692962579 0.000000e+00 745.0
7 TraesCS3B01G493900 chr3A 96.277 188 2 2 2769 2953 616496053 616496238 1.330000e-78 303.0
8 TraesCS3B01G493900 chr3A 91.489 188 12 2 2769 2953 8496557 8496743 3.780000e-64 255.0
9 TraesCS3B01G493900 chr3A 81.013 316 54 6 1114 1426 693450390 693450078 2.270000e-61 246.0
10 TraesCS3B01G493900 chr3A 78.981 314 60 6 1113 1423 693444135 693443825 2.980000e-50 209.0
11 TraesCS3B01G493900 chr3A 92.683 82 6 0 2095 2176 692963303 692963222 5.170000e-23 119.0
12 TraesCS3B01G493900 chr3D 91.992 949 54 13 1068 1994 556029667 556028719 0.000000e+00 1312.0
13 TraesCS3B01G493900 chr3D 91.141 587 32 12 2202 2769 556028508 556027923 0.000000e+00 778.0
14 TraesCS3B01G493900 chr3D 82.984 811 107 24 9 803 556031737 556032532 0.000000e+00 704.0
15 TraesCS3B01G493900 chr3D 80.186 323 60 4 1114 1434 557652552 557652232 3.800000e-59 239.0
16 TraesCS3B01G493900 chr6D 79.422 554 97 13 478 1016 2900575 2900024 2.780000e-100 375.0
17 TraesCS3B01G493900 chr5D 77.596 549 97 15 480 1009 283013279 283013820 2.860000e-80 309.0
18 TraesCS3B01G493900 chr5D 90.374 187 9 2 2770 2953 54720197 54720017 1.370000e-58 237.0
19 TraesCS3B01G493900 chr5D 88.333 60 4 3 621 678 423245732 423245790 5.280000e-08 69.4
20 TraesCS3B01G493900 chr7D 76.552 580 113 16 445 1009 459077304 459077875 2.230000e-76 296.0
21 TraesCS3B01G493900 chr7D 75.556 495 97 19 540 1016 29729010 29728522 3.830000e-54 222.0
22 TraesCS3B01G493900 chr1A 95.187 187 3 3 2770 2953 312611309 312611492 1.040000e-74 291.0
23 TraesCS3B01G493900 chr1A 84.058 276 44 0 2244 2519 256985325 256985050 1.740000e-67 267.0
24 TraesCS3B01G493900 chr4D 75.548 593 121 17 442 1017 8152014 8152599 1.350000e-68 270.0
25 TraesCS3B01G493900 chr1B 85.214 257 38 0 2263 2519 296811244 296810988 6.280000e-67 265.0
26 TraesCS3B01G493900 chrUn 91.489 188 12 2 2769 2953 362451269 362451455 3.780000e-64 255.0
27 TraesCS3B01G493900 chrUn 81.868 182 23 8 819 996 91245201 91245376 8.530000e-31 145.0
28 TraesCS3B01G493900 chr2D 93.243 148 6 3 2770 2914 218271763 218271617 6.410000e-52 215.0
29 TraesCS3B01G493900 chr2B 78.205 312 41 12 2263 2565 775373664 775373371 1.090000e-39 174.0
30 TraesCS3B01G493900 chr6B 80.526 190 35 2 828 1016 129444759 129444571 8.530000e-31 145.0
31 TraesCS3B01G493900 chr6B 79.310 203 35 6 819 1016 47430806 47430606 5.130000e-28 135.0
32 TraesCS3B01G493900 chr1D 80.100 201 35 5 819 1016 482827732 482827534 8.530000e-31 145.0
33 TraesCS3B01G493900 chr5A 74.769 325 61 15 589 896 380268112 380268432 3.090000e-25 126.0
34 TraesCS3B01G493900 chr2A 93.617 47 3 0 2770 2816 773226963 773227009 1.470000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G493900 chr3B 739028961 739031913 2952 True 5454 5454 100.000000 1 2953 1 chr3B.!!$R1 2952
1 TraesCS3B01G493900 chr3A 692962579 692964542 1963 True 750 1386 90.645667 871 2769 3 chr3A.!!$R3 1898
2 TraesCS3B01G493900 chr3D 556027923 556029667 1744 True 1045 1312 91.566500 1068 2769 2 chr3D.!!$R2 1701
3 TraesCS3B01G493900 chr3D 556031737 556032532 795 False 704 704 82.984000 9 803 1 chr3D.!!$F1 794
4 TraesCS3B01G493900 chr6D 2900024 2900575 551 True 375 375 79.422000 478 1016 1 chr6D.!!$R1 538
5 TraesCS3B01G493900 chr5D 283013279 283013820 541 False 309 309 77.596000 480 1009 1 chr5D.!!$F1 529
6 TraesCS3B01G493900 chr7D 459077304 459077875 571 False 296 296 76.552000 445 1009 1 chr7D.!!$F1 564
7 TraesCS3B01G493900 chr4D 8152014 8152599 585 False 270 270 75.548000 442 1017 1 chr4D.!!$F1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
827 845 0.178995 TGTGACCAATGCTGCTCCAA 60.179 50.0 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2788 2958 0.035056 GCTTGCCCAGGCTCTAGAAA 60.035 55.0 10.58 0.0 42.51 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 7.499321 TGAATACTTCCTTAACTTTGCGAAA 57.501 32.000 0.00 0.00 0.00 3.46
425 438 7.843490 TTAGAAACATGAAATCTCCTTACGG 57.157 36.000 0.00 0.00 0.00 4.02
431 444 5.421056 ACATGAAATCTCCTTACGGACACTA 59.579 40.000 0.00 0.00 34.92 2.74
433 446 6.540438 TGAAATCTCCTTACGGACACTATT 57.460 37.500 0.00 0.00 34.92 1.73
439 452 5.104193 TCTCCTTACGGACACTATTCCTACT 60.104 44.000 0.00 0.00 34.92 2.57
443 456 7.067494 TCCTTACGGACACTATTCCTACTTTAC 59.933 40.741 0.00 0.00 33.30 2.01
506 520 1.271856 TGAGCCCGTGGATTTGTCTA 58.728 50.000 0.00 0.00 0.00 2.59
551 566 2.406559 CAGTGATGGGAGAGGAATCCT 58.593 52.381 0.00 0.00 39.50 3.24
567 582 2.219875 CCTGGTGCCTCCACTCTGT 61.220 63.158 0.00 0.00 41.93 3.41
571 586 1.071699 TGGTGCCTCCACTCTGTTTAC 59.928 52.381 0.00 0.00 41.93 2.01
580 595 5.048224 CCTCCACTCTGTTTACTAGTTTCGA 60.048 44.000 0.00 0.00 0.00 3.71
659 675 2.507484 TCGAGTTTGTCTTCCGGACTA 58.493 47.619 1.83 0.00 44.74 2.59
679 696 4.950475 ACTATGATCCTCTCGAGTTTGTCA 59.050 41.667 13.13 12.97 0.00 3.58
680 697 3.857549 TGATCCTCTCGAGTTTGTCAG 57.142 47.619 13.13 0.60 0.00 3.51
688 705 2.028876 TCGAGTTTGTCAGTCTGGACA 58.971 47.619 0.00 0.78 45.54 4.02
690 707 3.069586 TCGAGTTTGTCAGTCTGGACATT 59.930 43.478 0.00 0.00 46.37 2.71
691 708 3.430218 CGAGTTTGTCAGTCTGGACATTC 59.570 47.826 0.00 2.46 46.37 2.67
731 748 4.351874 AGATTTTTGTCGTCTCCTTGGA 57.648 40.909 0.00 0.00 0.00 3.53
755 773 4.806247 CAGTGAGGTTATGATTTCTCGTCC 59.194 45.833 0.00 0.00 0.00 4.79
761 779 5.129485 AGGTTATGATTTCTCGTCCTGTGAT 59.871 40.000 0.00 0.00 0.00 3.06
769 787 8.474831 TGATTTCTCGTCCTGTGATAAGATTTA 58.525 33.333 0.00 0.00 0.00 1.40
782 800 6.256757 GTGATAAGATTTAGTGTCAGGTGCTC 59.743 42.308 0.00 0.00 0.00 4.26
808 826 7.264294 AGATCTATTCAAGAAGGGTTCAACT 57.736 36.000 0.00 0.00 37.89 3.16
809 827 7.108847 AGATCTATTCAAGAAGGGTTCAACTG 58.891 38.462 0.00 0.00 37.89 3.16
810 828 6.187727 TCTATTCAAGAAGGGTTCAACTGT 57.812 37.500 0.00 0.00 0.00 3.55
814 832 2.618709 CAAGAAGGGTTCAACTGTGACC 59.381 50.000 0.00 0.97 31.90 4.02
816 834 2.241176 AGAAGGGTTCAACTGTGACCAA 59.759 45.455 9.53 0.00 31.90 3.67
820 838 1.956477 GGTTCAACTGTGACCAATGCT 59.044 47.619 4.07 0.00 31.90 3.79
827 845 0.178995 TGTGACCAATGCTGCTCCAA 60.179 50.000 0.00 0.00 0.00 3.53
851 882 1.956170 CACGTGCACGAAGGCTTCT 60.956 57.895 42.94 17.58 43.02 2.85
852 883 0.666274 CACGTGCACGAAGGCTTCTA 60.666 55.000 42.94 6.05 43.02 2.10
854 885 0.388649 CGTGCACGAAGGCTTCTAGT 60.389 55.000 34.93 13.11 43.02 2.57
896 928 0.960861 GGCTTTATATGGGAGCGGCC 60.961 60.000 0.00 0.00 37.29 6.13
898 930 1.614317 GCTTTATATGGGAGCGGCCAT 60.614 52.381 2.24 0.00 38.95 4.40
944 976 4.683334 GCGGCAGTGGTTGTTCGC 62.683 66.667 0.00 0.00 41.43 4.70
946 978 1.666553 CGGCAGTGGTTGTTCGCTA 60.667 57.895 0.00 0.00 0.00 4.26
1055 1102 2.034179 TGCTGCACGCGTATATCTTACT 59.966 45.455 13.44 0.00 43.27 2.24
1063 1110 7.095102 TGCACGCGTATATCTTACTGTTCTATA 60.095 37.037 13.44 0.00 0.00 1.31
1091 1138 1.036707 GAGGTTCCGGAGATGGAGAG 58.963 60.000 3.34 0.00 39.72 3.20
1488 1542 7.227711 GCACTGAACTACTACTGATCTGATCTA 59.772 40.741 17.82 3.28 0.00 1.98
1494 1570 9.733556 AACTACTACTGATCTGATCTACCATAG 57.266 37.037 17.82 14.82 0.00 2.23
1498 1574 8.397957 ACTACTGATCTGATCTACCATAGGATT 58.602 37.037 17.82 0.00 0.00 3.01
1507 1583 7.445121 TGATCTACCATAGGATTGATGACAAC 58.555 38.462 0.00 0.00 38.90 3.32
1518 1594 6.494491 AGGATTGATGACAACCTTTTGAATCA 59.506 34.615 0.00 0.00 38.90 2.57
1520 1596 7.820872 GGATTGATGACAACCTTTTGAATCATT 59.179 33.333 0.00 5.70 38.24 2.57
1526 1602 6.165700 ACAACCTTTTGAATCATTTCTGCT 57.834 33.333 0.00 0.00 36.48 4.24
1527 1603 5.987347 ACAACCTTTTGAATCATTTCTGCTG 59.013 36.000 0.00 0.00 36.48 4.41
1528 1604 6.183360 ACAACCTTTTGAATCATTTCTGCTGA 60.183 34.615 0.00 0.00 36.48 4.26
1530 1606 6.628185 ACCTTTTGAATCATTTCTGCTGATC 58.372 36.000 0.00 0.00 32.22 2.92
1531 1607 6.436532 ACCTTTTGAATCATTTCTGCTGATCT 59.563 34.615 0.00 0.00 32.22 2.75
1532 1608 6.973474 CCTTTTGAATCATTTCTGCTGATCTC 59.027 38.462 0.00 0.00 32.22 2.75
1805 1881 4.719106 ACCGAGGAGGACGCGACT 62.719 66.667 15.93 11.01 45.76 4.18
1958 2034 3.628032 CCGACAAGTACATCTGAGCTAGA 59.372 47.826 0.00 0.00 40.37 2.43
1979 2055 1.109920 ATCAGCTCATCGCCGGTACT 61.110 55.000 1.90 0.00 40.39 2.73
1998 2074 2.339712 GCTGCCGTTTGCCATTGT 59.660 55.556 0.00 0.00 40.16 2.71
1999 2075 1.300853 GCTGCCGTTTGCCATTGTT 60.301 52.632 0.00 0.00 40.16 2.83
2011 2087 2.549633 CCATTGTTCGGCACTGATTC 57.450 50.000 0.00 0.00 30.29 2.52
2012 2088 2.086869 CCATTGTTCGGCACTGATTCT 58.913 47.619 0.00 0.00 30.29 2.40
2013 2089 2.489329 CCATTGTTCGGCACTGATTCTT 59.511 45.455 0.00 0.00 30.29 2.52
2014 2090 3.495193 CATTGTTCGGCACTGATTCTTG 58.505 45.455 0.00 0.00 30.29 3.02
2015 2091 0.874390 TGTTCGGCACTGATTCTTGC 59.126 50.000 3.09 3.09 38.06 4.01
2016 2092 0.179215 GTTCGGCACTGATTCTTGCG 60.179 55.000 5.19 0.00 39.81 4.85
2017 2093 1.911293 TTCGGCACTGATTCTTGCGC 61.911 55.000 0.00 0.00 39.81 6.09
2018 2094 2.486966 GGCACTGATTCTTGCGCC 59.513 61.111 4.18 0.00 39.81 6.53
2019 2095 2.099062 GCACTGATTCTTGCGCCG 59.901 61.111 4.18 0.00 0.00 6.46
2020 2096 2.390599 GCACTGATTCTTGCGCCGA 61.391 57.895 4.18 0.00 0.00 5.54
2021 2097 1.911293 GCACTGATTCTTGCGCCGAA 61.911 55.000 4.18 8.46 0.00 4.30
2022 2098 0.516877 CACTGATTCTTGCGCCGAAA 59.483 50.000 4.18 0.00 0.00 3.46
2023 2099 0.798776 ACTGATTCTTGCGCCGAAAG 59.201 50.000 4.18 0.00 0.00 2.62
2074 2150 5.760193 GCATCTCGCTATCTTATGAACTG 57.240 43.478 0.00 0.00 37.77 3.16
2075 2151 5.226396 GCATCTCGCTATCTTATGAACTGT 58.774 41.667 0.00 0.00 37.77 3.55
2076 2152 6.382608 GCATCTCGCTATCTTATGAACTGTA 58.617 40.000 0.00 0.00 37.77 2.74
2077 2153 6.306837 GCATCTCGCTATCTTATGAACTGTAC 59.693 42.308 0.00 0.00 37.77 2.90
2078 2154 6.315091 TCTCGCTATCTTATGAACTGTACC 57.685 41.667 0.00 0.00 0.00 3.34
2079 2155 5.826208 TCTCGCTATCTTATGAACTGTACCA 59.174 40.000 0.00 0.00 0.00 3.25
2080 2156 6.320418 TCTCGCTATCTTATGAACTGTACCAA 59.680 38.462 0.00 0.00 0.00 3.67
2081 2157 7.014326 TCTCGCTATCTTATGAACTGTACCAAT 59.986 37.037 0.00 0.00 0.00 3.16
2083 2159 8.635328 TCGCTATCTTATGAACTGTACCAATAA 58.365 33.333 0.00 0.00 0.00 1.40
2136 2221 2.231478 ACATCTCAACCACCACTCGTAG 59.769 50.000 0.00 0.00 0.00 3.51
2176 2261 1.474879 TGATCATGTCGCGTGGACTAA 59.525 47.619 5.77 0.00 46.24 2.24
2177 2262 2.094442 TGATCATGTCGCGTGGACTAAA 60.094 45.455 5.77 0.00 46.24 1.85
2178 2263 1.705256 TCATGTCGCGTGGACTAAAC 58.295 50.000 5.77 0.00 46.24 2.01
2179 2264 1.271379 TCATGTCGCGTGGACTAAACT 59.729 47.619 5.77 0.00 46.24 2.66
2180 2265 2.488937 TCATGTCGCGTGGACTAAACTA 59.511 45.455 5.77 0.00 46.24 2.24
2182 2267 1.881973 TGTCGCGTGGACTAAACTAGT 59.118 47.619 5.77 0.00 46.24 2.57
2208 2352 0.534203 AAAGAGCTCGGCGGACAAAA 60.534 50.000 7.21 0.00 0.00 2.44
2222 2366 0.602638 ACAAAACGATGGAGAGCGCA 60.603 50.000 11.47 0.00 33.02 6.09
2473 2623 4.684134 GGTGCTGGTGGGCCACAT 62.684 66.667 35.69 0.00 40.46 3.21
2579 2738 0.543174 AGCCCCTCAAGTTCGTCTCT 60.543 55.000 0.00 0.00 0.00 3.10
2591 2750 0.598562 TCGTCTCTGAACAGGTGAGC 59.401 55.000 1.93 0.00 0.00 4.26
2619 2781 2.660064 GCCCACTCGATCCACACCT 61.660 63.158 0.00 0.00 0.00 4.00
2621 2783 0.972983 CCCACTCGATCCACACCTCT 60.973 60.000 0.00 0.00 0.00 3.69
2622 2784 0.898320 CCACTCGATCCACACCTCTT 59.102 55.000 0.00 0.00 0.00 2.85
2624 2786 1.821753 CACTCGATCCACACCTCTTCT 59.178 52.381 0.00 0.00 0.00 2.85
2666 2836 7.256286 ACCTAACACACTCGATATTACAGTTC 58.744 38.462 0.00 0.00 0.00 3.01
2718 2888 1.679305 AGCGTGATCGAGACCACCT 60.679 57.895 9.00 5.63 39.71 4.00
2719 2889 1.226717 GCGTGATCGAGACCACCTC 60.227 63.158 9.00 0.00 39.71 3.85
2759 2929 0.514691 CTTGCAAGACGTTCCTGCTC 59.485 55.000 22.31 0.00 0.00 4.26
2795 2965 3.594603 CGGAGCCAGAACTTTTCTAGA 57.405 47.619 0.00 0.00 38.11 2.43
2796 2966 3.516615 CGGAGCCAGAACTTTTCTAGAG 58.483 50.000 0.00 0.00 38.11 2.43
2797 2967 3.266636 GGAGCCAGAACTTTTCTAGAGC 58.733 50.000 0.00 0.00 38.11 4.09
2798 2968 3.266636 GAGCCAGAACTTTTCTAGAGCC 58.733 50.000 0.00 0.00 38.11 4.70
2799 2969 2.909662 AGCCAGAACTTTTCTAGAGCCT 59.090 45.455 0.00 0.00 38.11 4.58
2800 2970 3.006247 GCCAGAACTTTTCTAGAGCCTG 58.994 50.000 0.00 0.00 38.11 4.85
2801 2971 3.604582 CCAGAACTTTTCTAGAGCCTGG 58.395 50.000 0.00 0.00 38.11 4.45
2802 2972 3.604582 CAGAACTTTTCTAGAGCCTGGG 58.395 50.000 0.00 0.00 38.11 4.45
2803 2973 2.026729 AGAACTTTTCTAGAGCCTGGGC 60.027 50.000 3.00 3.00 38.49 5.36
2804 2974 1.362224 ACTTTTCTAGAGCCTGGGCA 58.638 50.000 14.39 0.00 44.88 5.36
2805 2975 1.705186 ACTTTTCTAGAGCCTGGGCAA 59.295 47.619 14.39 0.00 44.88 4.52
2806 2976 2.290577 ACTTTTCTAGAGCCTGGGCAAG 60.291 50.000 14.39 8.84 44.88 4.01
2807 2977 0.035056 TTTCTAGAGCCTGGGCAAGC 60.035 55.000 14.39 3.01 44.88 4.01
2808 2978 0.911525 TTCTAGAGCCTGGGCAAGCT 60.912 55.000 14.39 10.01 44.88 3.74
2809 2979 0.911525 TCTAGAGCCTGGGCAAGCTT 60.912 55.000 14.39 0.00 44.88 3.74
2810 2980 0.747283 CTAGAGCCTGGGCAAGCTTG 60.747 60.000 22.44 22.44 44.88 4.01
2811 2981 1.200760 TAGAGCCTGGGCAAGCTTGA 61.201 55.000 30.39 8.44 44.88 3.02
2812 2982 2.035312 AGCCTGGGCAAGCTTGAG 59.965 61.111 30.39 17.60 44.88 3.02
2813 2983 3.756727 GCCTGGGCAAGCTTGAGC 61.757 66.667 30.39 15.42 41.49 4.26
2821 2991 1.457346 GCAAGCTTGAGCCTATGTGT 58.543 50.000 30.39 0.00 43.38 3.72
2822 2992 1.399791 GCAAGCTTGAGCCTATGTGTC 59.600 52.381 30.39 3.58 43.38 3.67
2823 2993 2.938756 GCAAGCTTGAGCCTATGTGTCT 60.939 50.000 30.39 0.00 43.38 3.41
2824 2994 3.679917 GCAAGCTTGAGCCTATGTGTCTA 60.680 47.826 30.39 0.00 43.38 2.59
2825 2995 4.507710 CAAGCTTGAGCCTATGTGTCTAA 58.492 43.478 22.31 0.00 43.38 2.10
2826 2996 5.121811 CAAGCTTGAGCCTATGTGTCTAAT 58.878 41.667 22.31 0.00 43.38 1.73
2827 2997 4.701765 AGCTTGAGCCTATGTGTCTAATG 58.298 43.478 0.00 0.00 43.38 1.90
2828 2998 4.163078 AGCTTGAGCCTATGTGTCTAATGT 59.837 41.667 0.00 0.00 43.38 2.71
2829 2999 4.509600 GCTTGAGCCTATGTGTCTAATGTC 59.490 45.833 0.00 0.00 34.31 3.06
2830 3000 4.307443 TGAGCCTATGTGTCTAATGTCG 57.693 45.455 0.00 0.00 0.00 4.35
2831 3001 3.951680 TGAGCCTATGTGTCTAATGTCGA 59.048 43.478 0.00 0.00 0.00 4.20
2832 3002 4.401202 TGAGCCTATGTGTCTAATGTCGAA 59.599 41.667 0.00 0.00 0.00 3.71
2833 3003 5.105513 TGAGCCTATGTGTCTAATGTCGAAA 60.106 40.000 0.00 0.00 0.00 3.46
2834 3004 5.918608 AGCCTATGTGTCTAATGTCGAAAT 58.081 37.500 0.00 0.00 0.00 2.17
2835 3005 6.349300 AGCCTATGTGTCTAATGTCGAAATT 58.651 36.000 6.02 6.02 0.00 1.82
2836 3006 7.497595 AGCCTATGTGTCTAATGTCGAAATTA 58.502 34.615 7.79 7.79 0.00 1.40
2837 3007 7.985184 AGCCTATGTGTCTAATGTCGAAATTAA 59.015 33.333 9.30 0.00 0.00 1.40
2838 3008 8.609176 GCCTATGTGTCTAATGTCGAAATTAAA 58.391 33.333 9.30 0.00 0.00 1.52
2843 3013 9.605955 TGTGTCTAATGTCGAAATTAAAATGTG 57.394 29.630 9.30 0.00 0.00 3.21
2844 3014 9.820229 GTGTCTAATGTCGAAATTAAAATGTGA 57.180 29.630 9.30 0.00 0.00 3.58
2850 3020 9.912634 AATGTCGAAATTAAAATGTGATGTTCT 57.087 25.926 0.00 0.00 0.00 3.01
2851 3021 8.726650 TGTCGAAATTAAAATGTGATGTTCTG 57.273 30.769 0.00 0.00 0.00 3.02
2852 3022 8.563732 TGTCGAAATTAAAATGTGATGTTCTGA 58.436 29.630 0.00 0.00 0.00 3.27
2853 3023 9.559958 GTCGAAATTAAAATGTGATGTTCTGAT 57.440 29.630 0.00 0.00 0.00 2.90
2863 3033 9.671279 AAATGTGATGTTCTGATAGATACAACA 57.329 29.630 0.00 0.00 0.00 3.33
2864 3034 9.842775 AATGTGATGTTCTGATAGATACAACAT 57.157 29.630 0.00 0.00 29.10 2.71
2878 3048 9.832445 ATAGATACAACATATAAAATAGCCCCG 57.168 33.333 0.00 0.00 0.00 5.73
2879 3049 7.913789 AGATACAACATATAAAATAGCCCCGA 58.086 34.615 0.00 0.00 0.00 5.14
2880 3050 8.380099 AGATACAACATATAAAATAGCCCCGAA 58.620 33.333 0.00 0.00 0.00 4.30
2881 3051 6.628919 ACAACATATAAAATAGCCCCGAAC 57.371 37.500 0.00 0.00 0.00 3.95
2882 3052 6.362248 ACAACATATAAAATAGCCCCGAACT 58.638 36.000 0.00 0.00 0.00 3.01
2883 3053 6.831868 ACAACATATAAAATAGCCCCGAACTT 59.168 34.615 0.00 0.00 0.00 2.66
2884 3054 7.012989 ACAACATATAAAATAGCCCCGAACTTC 59.987 37.037 0.00 0.00 0.00 3.01
2885 3055 5.699458 ACATATAAAATAGCCCCGAACTTCG 59.301 40.000 4.07 4.07 40.07 3.79
2886 3056 2.484742 AAAATAGCCCCGAACTTCGT 57.515 45.000 10.22 0.00 38.40 3.85
2887 3057 2.484742 AAATAGCCCCGAACTTCGTT 57.515 45.000 10.22 0.00 38.40 3.85
2888 3058 3.615224 AAATAGCCCCGAACTTCGTTA 57.385 42.857 10.22 0.00 38.40 3.18
2889 3059 2.591571 ATAGCCCCGAACTTCGTTAC 57.408 50.000 10.22 0.00 38.40 2.50
2890 3060 0.532115 TAGCCCCGAACTTCGTTACC 59.468 55.000 10.22 0.00 38.40 2.85
2891 3061 1.004679 GCCCCGAACTTCGTTACCA 60.005 57.895 10.22 0.00 38.40 3.25
2892 3062 1.017701 GCCCCGAACTTCGTTACCAG 61.018 60.000 10.22 0.00 38.40 4.00
2893 3063 0.604578 CCCCGAACTTCGTTACCAGA 59.395 55.000 10.22 0.00 38.40 3.86
2894 3064 1.001181 CCCCGAACTTCGTTACCAGAA 59.999 52.381 10.22 0.00 38.40 3.02
2895 3065 2.548493 CCCCGAACTTCGTTACCAGAAA 60.548 50.000 10.22 0.00 38.40 2.52
2896 3066 3.332034 CCCGAACTTCGTTACCAGAAAT 58.668 45.455 10.22 0.00 38.40 2.17
2897 3067 3.370061 CCCGAACTTCGTTACCAGAAATC 59.630 47.826 10.22 0.00 38.40 2.17
2898 3068 3.991773 CCGAACTTCGTTACCAGAAATCA 59.008 43.478 10.22 0.00 38.40 2.57
2899 3069 4.630069 CCGAACTTCGTTACCAGAAATCAT 59.370 41.667 10.22 0.00 38.40 2.45
2900 3070 5.121768 CCGAACTTCGTTACCAGAAATCATT 59.878 40.000 10.22 0.00 38.40 2.57
2901 3071 6.311935 CCGAACTTCGTTACCAGAAATCATTA 59.688 38.462 10.22 0.00 38.40 1.90
2902 3072 7.148540 CCGAACTTCGTTACCAGAAATCATTAA 60.149 37.037 10.22 0.00 38.40 1.40
2903 3073 8.388103 CGAACTTCGTTACCAGAAATCATTAAT 58.612 33.333 2.84 0.00 34.72 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
361 374 8.746052 TCTGGTTTTTCTATTGAAACTCTTCA 57.254 30.769 1.61 0.00 41.34 3.02
362 375 9.617975 CATCTGGTTTTTCTATTGAAACTCTTC 57.382 33.333 1.61 0.00 41.34 2.87
421 434 5.594317 GGGTAAAGTAGGAATAGTGTCCGTA 59.406 44.000 0.00 0.00 43.03 4.02
423 436 4.202192 GGGGTAAAGTAGGAATAGTGTCCG 60.202 50.000 0.00 0.00 43.03 4.79
425 438 6.155737 TCAAGGGGTAAAGTAGGAATAGTGTC 59.844 42.308 0.00 0.00 0.00 3.67
431 444 3.199289 CCGTCAAGGGGTAAAGTAGGAAT 59.801 47.826 0.00 0.00 35.97 3.01
433 446 2.181975 CCGTCAAGGGGTAAAGTAGGA 58.818 52.381 0.00 0.00 35.97 2.94
532 546 2.406559 CAGGATTCCTCTCCCATCACT 58.593 52.381 0.98 0.00 35.79 3.41
580 595 6.710744 CCTGCGAGGACTAAAAATACCATAAT 59.289 38.462 0.00 0.00 37.67 1.28
635 651 2.561419 TCCGGAAGACAAACTCGAAGAT 59.439 45.455 0.00 0.00 33.89 2.40
659 675 3.766591 ACTGACAAACTCGAGAGGATCAT 59.233 43.478 21.68 5.35 37.82 2.45
679 696 2.232452 CTCCGTCAAGAATGTCCAGACT 59.768 50.000 0.00 0.00 0.00 3.24
680 697 2.028930 ACTCCGTCAAGAATGTCCAGAC 60.029 50.000 0.00 0.00 0.00 3.51
688 705 2.224209 ACGTTGGAACTCCGTCAAGAAT 60.224 45.455 0.00 0.00 39.43 2.40
690 707 0.748450 ACGTTGGAACTCCGTCAAGA 59.252 50.000 0.00 0.00 39.43 3.02
691 708 2.030540 TCTACGTTGGAACTCCGTCAAG 60.031 50.000 0.00 0.00 39.43 3.02
701 718 5.051816 AGACGACAAAAATCTACGTTGGAA 58.948 37.500 0.00 0.00 37.32 3.53
731 748 5.407407 ACGAGAAATCATAACCTCACTGT 57.593 39.130 0.00 0.00 0.00 3.55
755 773 6.036517 GCACCTGACACTAAATCTTATCACAG 59.963 42.308 0.00 0.00 0.00 3.66
761 779 6.890268 TCTAGAGCACCTGACACTAAATCTTA 59.110 38.462 0.00 0.00 0.00 2.10
769 787 3.380471 AGATCTAGAGCACCTGACACT 57.620 47.619 11.20 0.00 0.00 3.55
782 800 8.482128 AGTTGAACCCTTCTTGAATAGATCTAG 58.518 37.037 8.70 0.00 31.54 2.43
814 832 2.488355 CGCCTTGGAGCAGCATTG 59.512 61.111 0.00 0.00 0.00 2.82
1036 1082 3.629058 ACAGTAAGATATACGCGTGCAG 58.371 45.455 24.59 2.24 0.00 4.41
1055 1102 2.829720 ACCTCCGCTTGTGTATAGAACA 59.170 45.455 0.00 0.00 35.06 3.18
1080 1127 1.064946 CACGACGCTCTCCATCTCC 59.935 63.158 0.00 0.00 0.00 3.71
1081 1128 0.452184 TTCACGACGCTCTCCATCTC 59.548 55.000 0.00 0.00 0.00 2.75
1091 1138 1.615107 CTCCGGTTTCTTCACGACGC 61.615 60.000 0.00 0.00 0.00 5.19
1311 1358 3.382832 AGGACCACCTTCTCGCCG 61.383 66.667 0.00 0.00 45.36 6.46
1469 1516 8.325787 CCTATGGTAGATCAGATCAGTAGTAGT 58.674 40.741 13.14 0.00 0.00 2.73
1488 1542 5.456921 AAGGTTGTCATCAATCCTATGGT 57.543 39.130 0.00 0.00 35.46 3.55
1494 1570 6.690530 TGATTCAAAAGGTTGTCATCAATCC 58.309 36.000 0.00 0.00 35.46 3.01
1498 1574 7.868922 CAGAAATGATTCAAAAGGTTGTCATCA 59.131 33.333 0.00 6.57 38.61 3.07
1507 1583 6.864342 AGATCAGCAGAAATGATTCAAAAGG 58.136 36.000 0.00 0.00 37.52 3.11
1518 1594 3.196469 TGGAACGAGAGATCAGCAGAAAT 59.804 43.478 0.00 0.00 34.15 2.17
1520 1596 2.165234 CTGGAACGAGAGATCAGCAGAA 59.835 50.000 0.00 0.00 34.15 3.02
1916 1992 1.369321 GATCTCCATGAGGACCGCC 59.631 63.158 0.00 0.00 39.61 6.13
1920 1996 1.006805 CGGCGATCTCCATGAGGAC 60.007 63.158 0.00 0.00 39.61 3.85
1994 2070 2.095059 GCAAGAATCAGTGCCGAACAAT 60.095 45.455 0.00 0.00 34.58 2.71
1997 2073 0.179215 CGCAAGAATCAGTGCCGAAC 60.179 55.000 3.81 0.00 37.47 3.95
1998 2074 1.911293 GCGCAAGAATCAGTGCCGAA 61.911 55.000 0.30 0.00 37.47 4.30
1999 2075 2.390599 GCGCAAGAATCAGTGCCGA 61.391 57.895 0.30 0.00 37.47 5.54
2005 2081 0.097674 CCTTTCGGCGCAAGAATCAG 59.902 55.000 20.56 9.37 43.02 2.90
2006 2082 0.321210 TCCTTTCGGCGCAAGAATCA 60.321 50.000 20.56 0.00 43.02 2.57
2007 2083 0.375106 CTCCTTTCGGCGCAAGAATC 59.625 55.000 20.56 0.00 43.02 2.52
2008 2084 0.036388 TCTCCTTTCGGCGCAAGAAT 60.036 50.000 20.56 0.00 43.02 2.40
2009 2085 0.250124 TTCTCCTTTCGGCGCAAGAA 60.250 50.000 20.56 11.88 43.02 2.52
2010 2086 0.036388 ATTCTCCTTTCGGCGCAAGA 60.036 50.000 20.56 4.98 43.02 3.02
2011 2087 0.375106 GATTCTCCTTTCGGCGCAAG 59.625 55.000 12.38 12.38 43.44 4.01
2012 2088 0.321210 TGATTCTCCTTTCGGCGCAA 60.321 50.000 10.83 0.00 0.00 4.85
2013 2089 0.107703 ATGATTCTCCTTTCGGCGCA 60.108 50.000 10.83 0.00 0.00 6.09
2014 2090 0.583917 GATGATTCTCCTTTCGGCGC 59.416 55.000 0.00 0.00 0.00 6.53
2015 2091 1.939974 TGATGATTCTCCTTTCGGCG 58.060 50.000 0.00 0.00 0.00 6.46
2016 2092 3.009723 TGTTGATGATTCTCCTTTCGGC 58.990 45.455 0.00 0.00 0.00 5.54
2017 2093 3.064545 GCTGTTGATGATTCTCCTTTCGG 59.935 47.826 0.00 0.00 0.00 4.30
2018 2094 3.937706 AGCTGTTGATGATTCTCCTTTCG 59.062 43.478 0.00 0.00 0.00 3.46
2019 2095 6.992063 TTAGCTGTTGATGATTCTCCTTTC 57.008 37.500 0.00 0.00 0.00 2.62
2020 2096 7.765695 TTTTAGCTGTTGATGATTCTCCTTT 57.234 32.000 0.00 0.00 0.00 3.11
2021 2097 7.765695 TTTTTAGCTGTTGATGATTCTCCTT 57.234 32.000 0.00 0.00 0.00 3.36
2118 2203 2.281539 TCTACGAGTGGTGGTTGAGA 57.718 50.000 0.00 0.00 0.00 3.27
2120 2205 3.133362 ACTTTTCTACGAGTGGTGGTTGA 59.867 43.478 0.00 0.00 0.00 3.18
2136 2221 3.813166 TCACGTCCATTTCTCCACTTTTC 59.187 43.478 0.00 0.00 0.00 2.29
2176 2261 4.561105 CGAGCTCTTTTCTTGGACTAGTT 58.439 43.478 12.85 0.00 0.00 2.24
2177 2262 3.056465 CCGAGCTCTTTTCTTGGACTAGT 60.056 47.826 12.85 0.00 37.30 2.57
2178 2263 3.516615 CCGAGCTCTTTTCTTGGACTAG 58.483 50.000 12.85 0.00 37.30 2.57
2179 2264 2.353803 GCCGAGCTCTTTTCTTGGACTA 60.354 50.000 12.85 0.00 37.30 2.59
2180 2265 1.609320 GCCGAGCTCTTTTCTTGGACT 60.609 52.381 12.85 0.00 37.30 3.85
2182 2267 0.670546 CGCCGAGCTCTTTTCTTGGA 60.671 55.000 12.85 0.00 37.30 3.53
2183 2268 1.639298 CCGCCGAGCTCTTTTCTTGG 61.639 60.000 12.85 4.63 38.01 3.61
2185 2270 0.670854 GTCCGCCGAGCTCTTTTCTT 60.671 55.000 12.85 0.00 0.00 2.52
2186 2271 1.079750 GTCCGCCGAGCTCTTTTCT 60.080 57.895 12.85 0.00 0.00 2.52
2188 2273 0.534203 TTTGTCCGCCGAGCTCTTTT 60.534 50.000 12.85 0.00 0.00 2.27
2208 2352 4.521062 GGCTGCGCTCTCCATCGT 62.521 66.667 9.73 0.00 0.00 3.73
2378 2528 3.003763 AACGAGCCCACCTCCTCC 61.004 66.667 0.00 0.00 37.27 4.30
2599 2761 4.451150 TGTGGATCGAGTGGGCGC 62.451 66.667 0.00 0.00 0.00 6.53
2605 2767 2.096248 GAGAAGAGGTGTGGATCGAGT 58.904 52.381 0.00 0.00 0.00 4.18
2619 2781 0.991920 GTTCATGGTGGGGGAGAAGA 59.008 55.000 0.00 0.00 0.00 2.87
2621 2783 0.838554 TCGTTCATGGTGGGGGAGAA 60.839 55.000 0.00 0.00 0.00 2.87
2622 2784 0.838554 TTCGTTCATGGTGGGGGAGA 60.839 55.000 0.00 0.00 0.00 3.71
2624 2786 1.377229 GTTCGTTCATGGTGGGGGA 59.623 57.895 0.00 0.00 0.00 4.81
2733 2903 2.058829 AACGTCTTGCAAGGGCGTTG 62.059 55.000 36.86 21.44 45.35 4.10
2735 2905 2.203153 AACGTCTTGCAAGGGCGT 60.203 55.556 30.02 30.02 45.35 5.68
2769 2939 2.771763 AAGTTCTGGCTCCGCGACTG 62.772 60.000 8.23 0.00 0.00 3.51
2770 2940 2.100879 AAAGTTCTGGCTCCGCGACT 62.101 55.000 8.23 0.00 0.00 4.18
2771 2941 1.228657 AAAAGTTCTGGCTCCGCGAC 61.229 55.000 8.23 0.00 0.00 5.19
2772 2942 0.949105 GAAAAGTTCTGGCTCCGCGA 60.949 55.000 8.23 0.00 0.00 5.87
2773 2943 0.951040 AGAAAAGTTCTGGCTCCGCG 60.951 55.000 0.00 0.00 38.91 6.46
2774 2944 2.003301 CTAGAAAAGTTCTGGCTCCGC 58.997 52.381 0.70 0.00 40.94 5.54
2775 2945 3.516615 CTCTAGAAAAGTTCTGGCTCCG 58.483 50.000 0.70 0.00 40.94 4.63
2776 2946 3.266636 GCTCTAGAAAAGTTCTGGCTCC 58.733 50.000 0.70 0.00 40.94 4.70
2777 2947 3.055458 AGGCTCTAGAAAAGTTCTGGCTC 60.055 47.826 0.70 0.00 40.94 4.70
2778 2948 2.909662 AGGCTCTAGAAAAGTTCTGGCT 59.090 45.455 0.70 0.00 40.94 4.75
2779 2949 3.006247 CAGGCTCTAGAAAAGTTCTGGC 58.994 50.000 0.70 3.20 40.94 4.85
2780 2950 3.604582 CCAGGCTCTAGAAAAGTTCTGG 58.395 50.000 0.70 1.71 40.94 3.86
2781 2951 3.604582 CCCAGGCTCTAGAAAAGTTCTG 58.395 50.000 0.70 0.00 40.94 3.02
2782 2952 2.026729 GCCCAGGCTCTAGAAAAGTTCT 60.027 50.000 0.08 0.00 39.81 3.01
2783 2953 2.290323 TGCCCAGGCTCTAGAAAAGTTC 60.290 50.000 10.58 0.00 42.51 3.01
2784 2954 1.705186 TGCCCAGGCTCTAGAAAAGTT 59.295 47.619 10.58 0.00 42.51 2.66
2785 2955 1.362224 TGCCCAGGCTCTAGAAAAGT 58.638 50.000 10.58 0.00 42.51 2.66
2786 2956 2.363683 CTTGCCCAGGCTCTAGAAAAG 58.636 52.381 10.58 0.00 42.51 2.27
2787 2957 1.614317 GCTTGCCCAGGCTCTAGAAAA 60.614 52.381 10.58 0.00 42.51 2.29
2788 2958 0.035056 GCTTGCCCAGGCTCTAGAAA 60.035 55.000 10.58 0.00 42.51 2.52
2789 2959 0.911525 AGCTTGCCCAGGCTCTAGAA 60.912 55.000 10.58 0.00 39.78 2.10
2790 2960 0.911525 AAGCTTGCCCAGGCTCTAGA 60.912 55.000 10.58 0.00 43.32 2.43
2791 2961 0.747283 CAAGCTTGCCCAGGCTCTAG 60.747 60.000 14.65 6.01 43.32 2.43
2792 2962 1.200760 TCAAGCTTGCCCAGGCTCTA 61.201 55.000 21.99 0.00 43.32 2.43
2793 2963 2.035312 CAAGCTTGCCCAGGCTCT 59.965 61.111 14.65 1.74 43.32 4.09
2794 2964 2.034687 TCAAGCTTGCCCAGGCTC 59.965 61.111 21.99 0.00 43.32 4.70
2795 2965 2.035312 CTCAAGCTTGCCCAGGCT 59.965 61.111 21.99 0.00 46.24 4.58
2796 2966 3.756727 GCTCAAGCTTGCCCAGGC 61.757 66.667 21.99 15.01 38.78 4.85
2797 2967 3.066814 GGCTCAAGCTTGCCCAGG 61.067 66.667 21.99 9.63 43.11 4.45
2802 2972 1.399791 GACACATAGGCTCAAGCTTGC 59.600 52.381 21.99 10.98 41.70 4.01
2803 2973 2.983229 AGACACATAGGCTCAAGCTTG 58.017 47.619 20.81 20.81 41.70 4.01
2804 2974 4.826274 TTAGACACATAGGCTCAAGCTT 57.174 40.909 0.00 0.00 41.70 3.74
2805 2975 4.163078 ACATTAGACACATAGGCTCAAGCT 59.837 41.667 1.46 0.00 41.70 3.74
2806 2976 4.446371 ACATTAGACACATAGGCTCAAGC 58.554 43.478 0.00 0.00 36.54 4.01
2807 2977 4.742167 CGACATTAGACACATAGGCTCAAG 59.258 45.833 0.00 0.00 36.54 3.02
2808 2978 4.401202 TCGACATTAGACACATAGGCTCAA 59.599 41.667 0.00 0.00 36.54 3.02
2809 2979 3.951680 TCGACATTAGACACATAGGCTCA 59.048 43.478 0.00 0.00 36.54 4.26
2810 2980 4.569761 TCGACATTAGACACATAGGCTC 57.430 45.455 0.00 0.00 36.54 4.70
2811 2981 5.339008 TTTCGACATTAGACACATAGGCT 57.661 39.130 0.00 0.00 40.36 4.58
2812 2982 6.604735 AATTTCGACATTAGACACATAGGC 57.395 37.500 0.00 0.00 0.00 3.93
2817 2987 9.605955 CACATTTTAATTTCGACATTAGACACA 57.394 29.630 4.35 0.00 0.00 3.72
2818 2988 9.820229 TCACATTTTAATTTCGACATTAGACAC 57.180 29.630 4.35 0.00 0.00 3.67
2824 2994 9.912634 AGAACATCACATTTTAATTTCGACATT 57.087 25.926 1.90 1.90 0.00 2.71
2825 2995 9.345517 CAGAACATCACATTTTAATTTCGACAT 57.654 29.630 0.00 0.00 0.00 3.06
2826 2996 8.563732 TCAGAACATCACATTTTAATTTCGACA 58.436 29.630 0.00 0.00 0.00 4.35
2827 2997 8.948853 TCAGAACATCACATTTTAATTTCGAC 57.051 30.769 0.00 0.00 0.00 4.20
2837 3007 9.671279 TGTTGTATCTATCAGAACATCACATTT 57.329 29.630 0.00 0.00 0.00 2.32
2838 3008 9.842775 ATGTTGTATCTATCAGAACATCACATT 57.157 29.630 0.00 0.00 33.02 2.71
2852 3022 9.832445 CGGGGCTATTTTATATGTTGTATCTAT 57.168 33.333 0.00 0.00 0.00 1.98
2853 3023 9.038072 TCGGGGCTATTTTATATGTTGTATCTA 57.962 33.333 0.00 0.00 0.00 1.98
2854 3024 7.913789 TCGGGGCTATTTTATATGTTGTATCT 58.086 34.615 0.00 0.00 0.00 1.98
2855 3025 8.448615 GTTCGGGGCTATTTTATATGTTGTATC 58.551 37.037 0.00 0.00 0.00 2.24
2856 3026 8.161425 AGTTCGGGGCTATTTTATATGTTGTAT 58.839 33.333 0.00 0.00 0.00 2.29
2857 3027 7.511268 AGTTCGGGGCTATTTTATATGTTGTA 58.489 34.615 0.00 0.00 0.00 2.41
2858 3028 6.362248 AGTTCGGGGCTATTTTATATGTTGT 58.638 36.000 0.00 0.00 0.00 3.32
2859 3029 6.877611 AGTTCGGGGCTATTTTATATGTTG 57.122 37.500 0.00 0.00 0.00 3.33
2860 3030 6.204108 CGAAGTTCGGGGCTATTTTATATGTT 59.796 38.462 17.61 0.00 36.00 2.71
2861 3031 5.699458 CGAAGTTCGGGGCTATTTTATATGT 59.301 40.000 17.61 0.00 36.00 2.29
2862 3032 5.699458 ACGAAGTTCGGGGCTATTTTATATG 59.301 40.000 27.62 0.00 45.59 1.78
2863 3033 5.861727 ACGAAGTTCGGGGCTATTTTATAT 58.138 37.500 27.62 0.00 45.59 0.86
2864 3034 5.280654 ACGAAGTTCGGGGCTATTTTATA 57.719 39.130 27.62 0.00 45.59 0.98
2865 3035 4.146745 ACGAAGTTCGGGGCTATTTTAT 57.853 40.909 27.62 0.56 45.59 1.40
2866 3036 3.615224 ACGAAGTTCGGGGCTATTTTA 57.385 42.857 27.62 0.00 45.59 1.52
2867 3037 2.484742 ACGAAGTTCGGGGCTATTTT 57.515 45.000 27.62 1.84 45.59 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.