Multiple sequence alignment - TraesCS3B01G493700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G493700 chr3B 100.000 4583 0 0 1 4583 739023486 739028068 0.000000e+00 8464
1 TraesCS3B01G493700 chr3B 91.149 531 43 1 122 652 425456454 425456980 0.000000e+00 717
2 TraesCS3B01G493700 chr3B 86.449 428 35 16 4167 4583 159519739 159519324 9.040000e-122 448
3 TraesCS3B01G493700 chr3A 87.871 2968 205 64 647 3516 692958962 692961872 0.000000e+00 3343
4 TraesCS3B01G493700 chr3A 97.375 419 8 2 4167 4583 616497537 616497120 0.000000e+00 710
5 TraesCS3B01G493700 chr3A 85.820 677 63 18 3518 4167 692961917 692962587 0.000000e+00 688
6 TraesCS3B01G493700 chr3A 93.810 210 11 1 4167 4376 8497425 8497218 9.570000e-82 315
7 TraesCS3B01G493700 chr3D 82.306 1622 175 56 1482 3058 556025392 556026946 0.000000e+00 1303
8 TraesCS3B01G493700 chr3D 86.241 814 36 31 647 1428 556024419 556025188 0.000000e+00 813
9 TraesCS3B01G493700 chr3D 93.531 371 17 4 3153 3516 556026973 556027343 3.120000e-151 545
10 TraesCS3B01G493700 chr3D 90.796 402 28 3 3775 4167 556027530 556027931 3.140000e-146 529
11 TraesCS3B01G493700 chr5B 92.347 588 44 1 64 651 598747496 598746910 0.000000e+00 835
12 TraesCS3B01G493700 chr6B 91.248 537 34 6 115 650 695475982 695476506 0.000000e+00 719
13 TraesCS3B01G493700 chr6B 97.143 105 3 0 3 107 181472190 181472086 1.310000e-40 178
14 TraesCS3B01G493700 chr1A 97.136 419 10 1 4167 4583 312612800 312612382 0.000000e+00 706
15 TraesCS3B01G493700 chr1A 87.028 424 36 14 4167 4583 357787985 357788396 1.160000e-125 460
16 TraesCS3B01G493700 chr4B 91.154 520 44 2 134 652 472005383 472005901 0.000000e+00 704
17 TraesCS3B01G493700 chr4B 89.431 246 16 4 4166 4408 626765276 626765514 7.450000e-78 302
18 TraesCS3B01G493700 chr6D 89.376 433 46 0 219 651 18670764 18670332 3.120000e-151 545
19 TraesCS3B01G493700 chr6D 91.667 108 6 1 3 107 97263133 97263026 3.690000e-31 147
20 TraesCS3B01G493700 chr7D 87.238 478 55 5 174 648 590081105 590081579 1.450000e-149 540
21 TraesCS3B01G493700 chr1D 88.000 450 48 5 202 648 372433515 372433069 1.130000e-145 527
22 TraesCS3B01G493700 chr2B 85.921 483 56 11 175 650 707173489 707173012 5.290000e-139 505
23 TraesCS3B01G493700 chr2B 90.055 181 16 2 113 292 43692261 43692082 2.760000e-57 233
24 TraesCS3B01G493700 chr2D 89.044 429 16 6 4167 4583 218270195 218270604 1.900000e-138 503
25 TraesCS3B01G493700 chr4D 88.250 400 47 0 272 671 463705868 463705469 3.210000e-131 479
26 TraesCS3B01G493700 chr5D 95.406 283 10 2 4223 4502 54715751 54716033 9.040000e-122 448
27 TraesCS3B01G493700 chr2A 87.261 314 21 9 4276 4583 669437141 669436841 1.580000e-89 340
28 TraesCS3B01G493700 chrUn 93.810 210 11 1 4167 4376 328531700 328531907 9.570000e-82 315
29 TraesCS3B01G493700 chr6A 85.965 114 7 4 3 107 116336549 116336436 3.750000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G493700 chr3B 739023486 739028068 4582 False 8464.0 8464 100.0000 1 4583 1 chr3B.!!$F2 4582
1 TraesCS3B01G493700 chr3B 425456454 425456980 526 False 717.0 717 91.1490 122 652 1 chr3B.!!$F1 530
2 TraesCS3B01G493700 chr3A 692958962 692962587 3625 False 2015.5 3343 86.8455 647 4167 2 chr3A.!!$F1 3520
3 TraesCS3B01G493700 chr3D 556024419 556027931 3512 False 797.5 1303 88.2185 647 4167 4 chr3D.!!$F1 3520
4 TraesCS3B01G493700 chr5B 598746910 598747496 586 True 835.0 835 92.3470 64 651 1 chr5B.!!$R1 587
5 TraesCS3B01G493700 chr6B 695475982 695476506 524 False 719.0 719 91.2480 115 650 1 chr6B.!!$F1 535
6 TraesCS3B01G493700 chr4B 472005383 472005901 518 False 704.0 704 91.1540 134 652 1 chr4B.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
968 1024 0.389426 CGGTGAAAACGTCTCGGGAT 60.389 55.0 0.0 0.0 0.00 3.85 F
1449 1533 0.107654 CCCACCACCAGTAGCTTAGC 60.108 60.0 0.0 0.0 0.00 3.09 F
2508 2757 0.461516 CTGCTCCATGTCAGCACGAT 60.462 55.0 11.6 0.0 42.09 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2208 0.179004 TGGGTGGGATGTGAACACAC 60.179 55.0 9.83 0.0 45.05 3.82 R
3342 3630 0.101040 CATTGTGCCGCCGAAATGAT 59.899 50.0 4.54 0.0 32.86 2.45 R
4233 4618 0.031314 CAGCTATCGCAGGACATCGT 59.969 55.0 0.00 0.0 39.10 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.457496 CGGTCGTGGATGCCTGCT 62.457 66.667 0.00 0.00 0.00 4.24
54 55 2.045926 GGTCGTGGATGCCTGCTT 60.046 61.111 0.00 0.00 0.00 3.91
55 56 2.109126 GGTCGTGGATGCCTGCTTC 61.109 63.158 0.00 0.00 0.00 3.86
56 57 2.125552 TCGTGGATGCCTGCTTCG 60.126 61.111 0.00 0.00 0.00 3.79
57 58 3.197790 CGTGGATGCCTGCTTCGG 61.198 66.667 0.00 0.00 0.00 4.30
80 81 4.175337 GGAGCTGCCGGTATGCCA 62.175 66.667 1.90 0.00 34.09 4.92
109 110 2.438795 GCGGAGGAGGAGTCGACT 60.439 66.667 20.18 20.18 0.00 4.18
110 111 2.766400 GCGGAGGAGGAGTCGACTG 61.766 68.421 25.58 6.87 0.00 3.51
475 477 1.837051 TGGCCAGAGAGTGTCCGTT 60.837 57.895 0.00 0.00 0.00 4.44
479 481 1.000506 GCCAGAGAGTGTCCGTTTGTA 59.999 52.381 0.00 0.00 0.00 2.41
499 501 3.291383 CGCTTCGGCCCCAAAACA 61.291 61.111 0.00 0.00 37.76 2.83
502 504 1.665442 CTTCGGCCCCAAAACAAGG 59.335 57.895 0.00 0.00 0.00 3.61
604 606 3.243941 GCTTTGTCCGTTTTACCCCAAAT 60.244 43.478 0.00 0.00 0.00 2.32
606 608 3.225177 TGTCCGTTTTACCCCAAATGA 57.775 42.857 0.00 0.00 0.00 2.57
609 611 2.892215 TCCGTTTTACCCCAAATGAACC 59.108 45.455 0.00 0.00 0.00 3.62
611 613 2.894765 CGTTTTACCCCAAATGAACCCT 59.105 45.455 0.00 0.00 0.00 4.34
675 681 8.093927 AGAAAAAGACTTTGGAGAGAGATGTAG 58.906 37.037 0.06 0.00 0.00 2.74
694 700 5.376625 TGTAGCCATCTGTCTGAAAGTTTT 58.623 37.500 0.00 0.00 33.76 2.43
703 709 6.659824 TCTGTCTGAAAGTTTTAGGAAAGGT 58.340 36.000 7.48 0.00 33.76 3.50
704 710 6.766467 TCTGTCTGAAAGTTTTAGGAAAGGTC 59.234 38.462 7.48 0.00 33.76 3.85
705 711 5.526111 TGTCTGAAAGTTTTAGGAAAGGTCG 59.474 40.000 7.48 0.00 33.76 4.79
706 712 5.526479 GTCTGAAAGTTTTAGGAAAGGTCGT 59.474 40.000 7.48 0.00 33.76 4.34
730 736 1.723003 GTCGGTGCGTCGTAAAAATCT 59.277 47.619 0.00 0.00 0.00 2.40
734 740 0.440758 TGCGTCGTAAAAATCTGCCG 59.559 50.000 0.00 0.00 0.00 5.69
740 746 1.202143 CGTAAAAATCTGCCGGCCTTC 60.202 52.381 26.77 0.00 0.00 3.46
745 751 2.303549 AATCTGCCGGCCTTCTCGAG 62.304 60.000 26.77 13.09 0.00 4.04
890 922 3.787394 TGGACGGAGAACCCAGAC 58.213 61.111 0.00 0.00 34.14 3.51
933 965 2.270850 GGCCACGCAGTCCCATTA 59.729 61.111 0.00 0.00 41.61 1.90
936 968 1.451387 CCACGCAGTCCCATTACCC 60.451 63.158 0.00 0.00 41.61 3.69
937 969 1.298340 CACGCAGTCCCATTACCCA 59.702 57.895 0.00 0.00 41.61 4.51
938 970 0.744414 CACGCAGTCCCATTACCCAG 60.744 60.000 0.00 0.00 41.61 4.45
965 1021 2.664436 GCCGGTGAAAACGTCTCGG 61.664 63.158 1.90 0.00 42.61 4.63
966 1022 2.025418 CCGGTGAAAACGTCTCGGG 61.025 63.158 0.00 0.00 38.91 5.14
968 1024 0.389426 CGGTGAAAACGTCTCGGGAT 60.389 55.000 0.00 0.00 0.00 3.85
971 1027 3.328505 GGTGAAAACGTCTCGGGATAAA 58.671 45.455 0.00 0.00 0.00 1.40
972 1028 3.937079 GGTGAAAACGTCTCGGGATAAAT 59.063 43.478 0.00 0.00 0.00 1.40
973 1029 4.033702 GGTGAAAACGTCTCGGGATAAATC 59.966 45.833 0.00 0.00 0.00 2.17
975 1031 4.628333 TGAAAACGTCTCGGGATAAATCAC 59.372 41.667 0.00 0.00 0.00 3.06
976 1032 3.880047 AACGTCTCGGGATAAATCACA 57.120 42.857 0.00 0.00 0.00 3.58
977 1033 3.160777 ACGTCTCGGGATAAATCACAC 57.839 47.619 0.00 0.00 0.00 3.82
978 1034 2.117137 CGTCTCGGGATAAATCACACG 58.883 52.381 0.00 0.00 0.00 4.49
979 1035 1.859080 GTCTCGGGATAAATCACACGC 59.141 52.381 0.00 0.00 0.00 5.34
980 1036 1.478916 TCTCGGGATAAATCACACGCA 59.521 47.619 0.00 0.00 0.00 5.24
982 1038 1.206132 TCGGGATAAATCACACGCACT 59.794 47.619 0.00 0.00 0.00 4.40
983 1039 1.593006 CGGGATAAATCACACGCACTC 59.407 52.381 0.00 0.00 0.00 3.51
984 1040 2.627945 GGGATAAATCACACGCACTCA 58.372 47.619 0.00 0.00 0.00 3.41
985 1041 2.609459 GGGATAAATCACACGCACTCAG 59.391 50.000 0.00 0.00 0.00 3.35
1017 1073 3.310307 GGCGCCCCACCAAACATT 61.310 61.111 18.11 0.00 0.00 2.71
1019 1075 2.566010 CGCCCCACCAAACATTCG 59.434 61.111 0.00 0.00 0.00 3.34
1025 1081 2.504367 CCCACCAAACATTCGTTCTCT 58.496 47.619 0.00 0.00 32.91 3.10
1410 1494 2.962569 CTGCCTCGACTCCGACAA 59.037 61.111 0.00 0.00 40.30 3.18
1449 1533 0.107654 CCCACCACCAGTAGCTTAGC 60.108 60.000 0.00 0.00 0.00 3.09
1452 1536 2.101582 CCACCACCAGTAGCTTAGCTAG 59.898 54.545 14.87 5.83 42.11 3.42
1476 1560 1.867233 TGCTTCTTCTGCTCGTTTGTC 59.133 47.619 0.00 0.00 0.00 3.18
1650 1883 2.095263 GTCATTCACATTGACCGGGTTG 60.095 50.000 6.32 0.00 38.00 3.77
1652 1885 1.600023 TTCACATTGACCGGGTTGTC 58.400 50.000 6.32 0.00 35.77 3.18
1653 1886 0.470341 TCACATTGACCGGGTTGTCA 59.530 50.000 6.32 0.00 43.26 3.58
1715 1948 6.090763 CGTTTACAATGCTTGACACTGATAGA 59.909 38.462 3.37 0.00 0.00 1.98
1727 1960 6.935167 TGACACTGATAGAATTAGCAACTCA 58.065 36.000 0.00 0.00 0.00 3.41
1791 2025 7.651704 CCACGAAAGAGGAAAAATAAATGTGTT 59.348 33.333 0.00 0.00 45.46 3.32
1912 2149 3.176708 GCTTGTGCATGTTGCTATCAAG 58.823 45.455 18.37 18.37 45.31 3.02
1962 2199 5.560724 AGTACACAAACTAGTGATGCCAAT 58.439 37.500 0.00 0.00 42.05 3.16
1971 2208 4.943705 ACTAGTGATGCCAATTAGTTGTGG 59.056 41.667 0.00 0.00 38.00 4.17
1997 2234 1.710244 TCACATCCCACCCACAGAAAT 59.290 47.619 0.00 0.00 0.00 2.17
2011 2248 8.359642 CACCCACAGAAATATGAAGAAGAAAAA 58.640 33.333 0.00 0.00 0.00 1.94
2013 2250 7.814587 CCCACAGAAATATGAAGAAGAAAAACC 59.185 37.037 0.00 0.00 0.00 3.27
2014 2251 7.538678 CCACAGAAATATGAAGAAGAAAAACCG 59.461 37.037 0.00 0.00 0.00 4.44
2015 2252 8.076178 CACAGAAATATGAAGAAGAAAAACCGT 58.924 33.333 0.00 0.00 0.00 4.83
2132 2371 6.947733 TCTTGTTGGTTCTGGAATATGTCATT 59.052 34.615 0.00 0.00 0.00 2.57
2136 2375 5.192927 TGGTTCTGGAATATGTCATTGGAC 58.807 41.667 0.00 0.00 44.57 4.02
2157 2396 4.932105 TGGGCAAAGGGGCACACC 62.932 66.667 0.00 0.00 43.53 4.16
2181 2420 7.451877 ACCTCAGTTTAGAGTTTAGACATCTCA 59.548 37.037 0.00 0.00 33.75 3.27
2184 2423 9.516546 TCAGTTTAGAGTTTAGACATCTCACTA 57.483 33.333 0.00 0.00 0.00 2.74
2273 2514 5.192927 TGGTTGGTTCTGGAATATGACATC 58.807 41.667 0.00 0.00 0.00 3.06
2280 2521 2.899900 CTGGAATATGACATCGAGGGGA 59.100 50.000 0.69 0.00 0.00 4.81
2342 2591 6.762661 AGAAAAATGATGTTTGTCCTTTGTGG 59.237 34.615 0.00 0.00 37.10 4.17
2395 2644 5.221541 GGTCCTTGCAGCTACAATCTACTAT 60.222 44.000 0.00 0.00 0.00 2.12
2410 2659 6.723298 ATCTACTATACCCATCTGCTATGC 57.277 41.667 0.00 0.00 0.00 3.14
2489 2738 1.022735 CAGGAGCTGAATGCCACATC 58.977 55.000 0.00 0.00 44.23 3.06
2508 2757 0.461516 CTGCTCCATGTCAGCACGAT 60.462 55.000 11.60 0.00 42.09 3.73
2561 2810 6.980593 TCTCAACAAGATAACATGTTTTGGG 58.019 36.000 17.78 13.55 36.09 4.12
2579 2828 2.907696 TGGGGGTTTCTTCTGTCGAATA 59.092 45.455 0.00 0.00 0.00 1.75
2582 2831 4.948004 GGGGGTTTCTTCTGTCGAATATTT 59.052 41.667 0.00 0.00 0.00 1.40
2583 2832 5.417894 GGGGGTTTCTTCTGTCGAATATTTT 59.582 40.000 0.00 0.00 0.00 1.82
2584 2833 6.322491 GGGGTTTCTTCTGTCGAATATTTTG 58.678 40.000 0.00 0.00 0.00 2.44
2585 2834 6.150474 GGGGTTTCTTCTGTCGAATATTTTGA 59.850 38.462 0.00 0.00 0.00 2.69
2586 2835 7.148069 GGGGTTTCTTCTGTCGAATATTTTGAT 60.148 37.037 0.00 0.00 0.00 2.57
2587 2836 8.889717 GGGTTTCTTCTGTCGAATATTTTGATA 58.110 33.333 0.00 0.00 0.00 2.15
2597 2846 6.581166 GTCGAATATTTTGATATTTTCCCCGC 59.419 38.462 0.00 0.00 0.00 6.13
2617 2877 2.871022 GCTCTAGGACAATACGACGAGA 59.129 50.000 0.00 0.00 0.00 4.04
2630 2890 1.513158 ACGAGAGTGGATGCTTCCG 59.487 57.895 13.54 3.57 45.89 4.30
2671 2943 7.756272 TCATCATTTGCAATATGTTCTGTGAAC 59.244 33.333 0.00 3.74 0.00 3.18
2676 2948 8.840833 TTTGCAATATGTTCTGTGAACTAGTA 57.159 30.769 0.00 3.67 0.00 1.82
2677 2949 7.827819 TGCAATATGTTCTGTGAACTAGTAC 57.172 36.000 11.06 0.00 0.00 2.73
2722 3009 8.861086 ACTGTAATTTCTCTGAACTCTGTAGAA 58.139 33.333 0.00 0.00 0.00 2.10
2740 3027 8.435187 TCTGTAGAATTCATCTATCCAGCAAAT 58.565 33.333 8.44 0.00 42.51 2.32
2815 3102 1.797211 GATCACTAGACCCTCCGCCG 61.797 65.000 0.00 0.00 0.00 6.46
2823 3110 2.281208 CCCTCCGCCGTTGACAAA 60.281 61.111 0.00 0.00 0.00 2.83
2828 3115 2.566010 CGCCGTTGACAAATGGGG 59.434 61.111 9.49 9.49 45.70 4.96
2834 3121 1.960689 CGTTGACAAATGGGGGTTCTT 59.039 47.619 0.00 0.00 0.00 2.52
2932 3219 2.418197 CGTCATTGTATCAACCGTCCCT 60.418 50.000 0.00 0.00 0.00 4.20
2938 3225 3.104512 TGTATCAACCGTCCCTCAAGAT 58.895 45.455 0.00 0.00 0.00 2.40
2955 3242 8.077386 CCCTCAAGATTTCTCGTAAGTATACTC 58.923 40.741 5.70 0.00 39.48 2.59
3009 3296 3.955650 TTAGCACTTCTTTCCTAGCGT 57.044 42.857 0.00 0.00 0.00 5.07
3037 3325 9.853177 AGCATTTTCCTACTGCTTAAATAGTAT 57.147 29.630 0.00 0.00 43.44 2.12
3065 3353 8.620116 TTCAGTTCTTGTATGAAACATGATCA 57.380 30.769 0.00 0.00 40.72 2.92
3076 3364 9.817365 GTATGAAACATGATCATAAGAAATCCG 57.183 33.333 20.05 0.00 40.44 4.18
3084 3372 6.356556 TGATCATAAGAAATCCGGTCACATT 58.643 36.000 0.00 0.00 0.00 2.71
3086 3374 7.990314 TGATCATAAGAAATCCGGTCACATTAA 59.010 33.333 0.00 0.00 0.00 1.40
3088 3376 4.939509 AAGAAATCCGGTCACATTAACG 57.060 40.909 0.00 0.00 0.00 3.18
3089 3377 4.196626 AGAAATCCGGTCACATTAACGA 57.803 40.909 0.00 0.00 0.00 3.85
3094 3382 3.836949 TCCGGTCACATTAACGAGTTAC 58.163 45.455 0.00 0.00 0.00 2.50
3102 3390 8.378421 GGTCACATTAACGAGTTACTATTTCAC 58.622 37.037 0.00 0.00 0.00 3.18
3104 3392 9.350357 TCACATTAACGAGTTACTATTTCACTC 57.650 33.333 0.00 0.00 34.68 3.51
3123 3411 4.935885 CTCAAAATGAGTAGAGTGCACC 57.064 45.455 14.63 5.12 39.58 5.01
3126 3414 0.898320 AATGAGTAGAGTGCACCGCT 59.102 50.000 14.63 13.99 0.00 5.52
3128 3416 1.095600 TGAGTAGAGTGCACCGCTAG 58.904 55.000 14.63 0.00 0.00 3.42
3132 3420 2.619177 AGTAGAGTGCACCGCTAGTATG 59.381 50.000 14.63 0.00 0.00 2.39
3134 3422 1.405821 AGAGTGCACCGCTAGTATGTC 59.594 52.381 14.63 0.00 0.00 3.06
3136 3424 1.757118 AGTGCACCGCTAGTATGTCAT 59.243 47.619 14.63 0.00 0.00 3.06
3272 3560 2.360949 ATCAGCGCCACTCTGATCGG 62.361 60.000 2.29 0.00 45.31 4.18
3279 3567 4.498520 ACTCTGATCGGTGCCGCG 62.499 66.667 5.64 0.00 39.59 6.46
3288 3576 2.811317 GGTGCCGCGTTGAGAGAG 60.811 66.667 4.92 0.00 0.00 3.20
3321 3609 7.535258 GTGAACAATGTGAAATACTACAAGCTG 59.465 37.037 0.00 0.00 0.00 4.24
3324 3612 6.714810 ACAATGTGAAATACTACAAGCTGGAA 59.285 34.615 0.00 0.00 0.00 3.53
3342 3630 0.323629 AATTCCGAGTCGAAAGCCCA 59.676 50.000 15.64 0.00 0.00 5.36
3345 3633 1.218047 CCGAGTCGAAAGCCCATCA 59.782 57.895 15.64 0.00 0.00 3.07
3456 3744 3.188667 CGGTTAAGGAAGAGTTCTTTGCC 59.811 47.826 0.00 0.00 36.11 4.52
3504 3792 9.249457 GTGATCGATGTTTGATCTTGTAGATAA 57.751 33.333 0.54 0.00 42.18 1.75
3508 3796 9.087424 TCGATGTTTGATCTTGTAGATAAACAG 57.913 33.333 18.23 11.95 39.10 3.16
3509 3797 8.873830 CGATGTTTGATCTTGTAGATAAACAGT 58.126 33.333 18.23 12.20 39.10 3.55
3518 3806 8.611654 TCTTGTAGATAAACAGTTTTGTACCC 57.388 34.615 3.25 0.00 36.23 3.69
3519 3807 7.385752 TCTTGTAGATAAACAGTTTTGTACCCG 59.614 37.037 3.25 1.25 36.23 5.28
3523 3858 5.467735 AGATAAACAGTTTTGTACCCGTGTC 59.532 40.000 3.25 0.00 36.23 3.67
3619 3975 4.583871 ACATCCATGTCTGAAGAACTTCC 58.416 43.478 11.30 0.00 35.87 3.46
3620 3976 3.703001 TCCATGTCTGAAGAACTTCCC 57.297 47.619 11.30 1.84 38.77 3.97
3622 3978 4.425772 TCCATGTCTGAAGAACTTCCCTA 58.574 43.478 11.30 0.00 38.77 3.53
3624 3980 3.963428 TGTCTGAAGAACTTCCCTAGC 57.037 47.619 11.30 1.90 38.77 3.42
3625 3981 3.239449 TGTCTGAAGAACTTCCCTAGCA 58.761 45.455 11.30 3.89 38.77 3.49
3626 3982 3.646162 TGTCTGAAGAACTTCCCTAGCAA 59.354 43.478 11.30 0.00 38.77 3.91
3627 3983 4.249661 GTCTGAAGAACTTCCCTAGCAAG 58.750 47.826 11.30 1.93 38.77 4.01
3628 3984 3.261897 TCTGAAGAACTTCCCTAGCAAGG 59.738 47.826 11.30 0.00 43.25 3.61
3629 3985 2.979678 TGAAGAACTTCCCTAGCAAGGT 59.020 45.455 11.30 0.00 41.89 3.50
3630 3986 3.008049 TGAAGAACTTCCCTAGCAAGGTC 59.992 47.826 11.30 8.90 41.89 3.85
3631 3987 2.909217 AGAACTTCCCTAGCAAGGTCT 58.091 47.619 12.38 12.38 42.14 3.85
3632 3988 2.569404 AGAACTTCCCTAGCAAGGTCTG 59.431 50.000 15.89 0.00 44.68 3.51
3634 3990 0.543749 CTTCCCTAGCAAGGTCTGGG 59.456 60.000 0.00 0.00 41.89 4.45
3637 3993 2.660064 CCTAGCAAGGTCTGGGCGT 61.660 63.158 0.00 0.00 38.19 5.68
3652 4013 1.951602 GGGCGTAAGGTTTTGTCAAGT 59.048 47.619 0.00 0.00 38.28 3.16
3653 4014 3.140623 GGGCGTAAGGTTTTGTCAAGTA 58.859 45.455 0.00 0.00 38.28 2.24
3654 4015 3.187842 GGGCGTAAGGTTTTGTCAAGTAG 59.812 47.826 0.00 0.00 38.28 2.57
3656 4017 4.151867 GGCGTAAGGTTTTGTCAAGTAGAG 59.848 45.833 0.00 0.00 38.28 2.43
3664 4025 6.712547 AGGTTTTGTCAAGTAGAGGAGAAATG 59.287 38.462 0.00 0.00 0.00 2.32
3665 4026 6.374578 GTTTTGTCAAGTAGAGGAGAAATGC 58.625 40.000 0.00 0.00 0.00 3.56
3670 4031 5.470098 GTCAAGTAGAGGAGAAATGCAACAA 59.530 40.000 0.00 0.00 0.00 2.83
3681 4043 6.647895 GGAGAAATGCAACAAAAATGATCTGT 59.352 34.615 0.00 0.00 0.00 3.41
3683 4045 8.524870 AGAAATGCAACAAAAATGATCTGTAC 57.475 30.769 0.00 0.00 0.00 2.90
3690 4052 9.023967 GCAACAAAAATGATCTGTACCATAATC 57.976 33.333 0.00 0.00 0.00 1.75
3704 4066 9.383519 CTGTACCATAATCTTCTTGTTACACAT 57.616 33.333 0.00 0.00 0.00 3.21
3717 4079 8.560355 TCTTGTTACACATATGTATGCACTTT 57.440 30.769 8.32 0.00 41.02 2.66
3719 4081 9.277565 CTTGTTACACATATGTATGCACTTTTC 57.722 33.333 8.32 0.00 41.02 2.29
3720 4082 8.560355 TGTTACACATATGTATGCACTTTTCT 57.440 30.769 8.32 0.00 41.02 2.52
3734 4096 5.360714 TGCACTTTTCTTTTGGACAGAGAAT 59.639 36.000 0.00 0.00 30.26 2.40
3735 4097 5.689068 GCACTTTTCTTTTGGACAGAGAATG 59.311 40.000 2.48 0.95 30.26 2.67
3741 4103 8.690203 TTTCTTTTGGACAGAGAATGTATTCA 57.310 30.769 7.30 0.00 44.17 2.57
3765 4135 9.734984 TCATATTTGATGATATGCAGTCAGAAT 57.265 29.630 9.98 11.07 39.01 2.40
3768 4138 7.492352 TTTGATGATATGCAGTCAGAATCAG 57.508 36.000 9.98 0.00 34.24 2.90
3777 4147 4.142204 TGCAGTCAGAATCAGACATCTCTC 60.142 45.833 8.47 0.00 38.46 3.20
3780 4150 4.946772 AGTCAGAATCAGACATCTCTCGAA 59.053 41.667 8.47 0.00 38.46 3.71
3786 4156 4.909696 TCAGACATCTCTCGAATTCTCC 57.090 45.455 3.52 0.00 0.00 3.71
3829 4206 3.996150 ACTGAACATGAAGTTTGCTGG 57.004 42.857 0.00 0.00 41.51 4.85
3834 4211 4.159321 TGAACATGAAGTTTGCTGGTTCAA 59.841 37.500 0.00 0.00 41.51 2.69
3835 4212 4.311816 ACATGAAGTTTGCTGGTTCAAG 57.688 40.909 0.00 0.00 34.02 3.02
3857 4242 4.081420 AGTGTACTTGTTGGCTATCTCCAG 60.081 45.833 0.00 0.00 37.44 3.86
4038 4423 3.885521 CCGTACCTCTCCGCCGTC 61.886 72.222 0.00 0.00 0.00 4.79
4041 4426 2.045131 GTACCTCTCCGCCGTCAGT 61.045 63.158 0.00 0.00 0.00 3.41
4054 4439 4.791069 TCAGTACCCCCTCCCCGC 62.791 72.222 0.00 0.00 0.00 6.13
4122 4507 4.803426 GCCAGCGTCAGGTCCTCG 62.803 72.222 0.00 0.00 0.00 4.63
4167 4552 3.792736 GCCATGTACTCCGGCCCA 61.793 66.667 0.00 0.00 40.07 5.36
4168 4553 2.505982 CCATGTACTCCGGCCCAG 59.494 66.667 0.00 0.00 0.00 4.45
4169 4554 2.505982 CATGTACTCCGGCCCAGG 59.494 66.667 0.00 0.00 0.00 4.45
4170 4555 2.768344 ATGTACTCCGGCCCAGGG 60.768 66.667 0.00 0.00 0.00 4.45
4215 4600 4.473520 CACTTGCCCGGGCTCGAT 62.474 66.667 43.34 24.72 42.51 3.59
4216 4601 4.473520 ACTTGCCCGGGCTCGATG 62.474 66.667 43.34 27.52 42.51 3.84
4226 4611 4.966005 GCTCGATGCCTATGCGTA 57.034 55.556 0.00 0.00 41.78 4.42
4227 4612 2.435741 GCTCGATGCCTATGCGTAC 58.564 57.895 0.00 0.00 41.78 3.67
4228 4613 1.337817 GCTCGATGCCTATGCGTACG 61.338 60.000 11.84 11.84 41.78 3.67
4229 4614 1.337817 CTCGATGCCTATGCGTACGC 61.338 60.000 32.49 32.49 41.78 4.42
4230 4615 1.371758 CGATGCCTATGCGTACGCT 60.372 57.895 36.99 25.20 41.78 5.07
4231 4616 1.608966 CGATGCCTATGCGTACGCTG 61.609 60.000 36.99 25.98 41.78 5.18
4232 4617 0.597637 GATGCCTATGCGTACGCTGT 60.598 55.000 36.99 27.56 41.78 4.40
4233 4618 0.671796 ATGCCTATGCGTACGCTGTA 59.328 50.000 36.99 27.24 41.78 2.74
4234 4619 0.248743 TGCCTATGCGTACGCTGTAC 60.249 55.000 36.99 23.34 41.78 2.90
4235 4620 3.832483 TGCCTATGCGTACGCTGTACG 62.832 57.143 36.99 26.01 44.81 3.67
4245 4630 3.693245 GCTGTACGATGTCCTGCG 58.307 61.111 0.00 0.00 0.00 5.18
4246 4631 1.138883 GCTGTACGATGTCCTGCGA 59.861 57.895 0.00 0.00 0.00 5.10
4247 4632 0.249073 GCTGTACGATGTCCTGCGAT 60.249 55.000 0.00 0.00 0.00 4.58
4248 4633 1.001706 GCTGTACGATGTCCTGCGATA 60.002 52.381 0.00 0.00 0.00 2.92
4249 4634 2.918549 GCTGTACGATGTCCTGCGATAG 60.919 54.545 0.00 0.00 0.00 2.08
4274 4659 2.153366 AAAATTGACGTACGGACCGT 57.847 45.000 25.14 25.14 44.35 4.83
4275 4660 1.421382 AAATTGACGTACGGACCGTG 58.579 50.000 29.55 16.06 41.39 4.94
4276 4661 0.597568 AATTGACGTACGGACCGTGA 59.402 50.000 29.55 10.70 41.39 4.35
4277 4662 0.813184 ATTGACGTACGGACCGTGAT 59.187 50.000 29.55 14.20 41.39 3.06
4278 4663 0.597568 TTGACGTACGGACCGTGATT 59.402 50.000 29.55 12.60 41.39 2.57
4279 4664 0.597568 TGACGTACGGACCGTGATTT 59.402 50.000 29.55 10.72 41.39 2.17
4280 4665 1.262882 GACGTACGGACCGTGATTTC 58.737 55.000 29.55 15.49 41.39 2.17
4281 4666 0.109132 ACGTACGGACCGTGATTTCC 60.109 55.000 29.55 8.84 41.39 3.13
4282 4667 0.803380 CGTACGGACCGTGATTTCCC 60.803 60.000 29.55 7.18 41.39 3.97
4283 4668 0.803380 GTACGGACCGTGATTTCCCG 60.803 60.000 29.55 0.00 41.39 5.14
4288 4673 2.824041 CCGTGATTTCCCGGGCAG 60.824 66.667 18.49 2.17 40.54 4.85
4289 4674 2.267642 CGTGATTTCCCGGGCAGA 59.732 61.111 18.49 3.79 0.00 4.26
4290 4675 1.376683 CGTGATTTCCCGGGCAGAA 60.377 57.895 18.49 11.11 0.00 3.02
4291 4676 0.748005 CGTGATTTCCCGGGCAGAAT 60.748 55.000 18.49 15.73 0.00 2.40
4292 4677 1.474330 GTGATTTCCCGGGCAGAATT 58.526 50.000 18.49 0.91 0.00 2.17
4293 4678 1.134946 GTGATTTCCCGGGCAGAATTG 59.865 52.381 18.49 0.00 0.00 2.32
4294 4679 1.272425 TGATTTCCCGGGCAGAATTGT 60.272 47.619 18.49 0.00 0.00 2.71
4295 4680 1.134946 GATTTCCCGGGCAGAATTGTG 59.865 52.381 18.49 0.00 0.00 3.33
4296 4681 0.178975 TTTCCCGGGCAGAATTGTGT 60.179 50.000 18.49 0.00 0.00 3.72
4297 4682 0.178975 TTCCCGGGCAGAATTGTGTT 60.179 50.000 18.49 0.00 0.00 3.32
4298 4683 0.893270 TCCCGGGCAGAATTGTGTTG 60.893 55.000 18.49 0.00 0.00 3.33
4299 4684 1.586028 CCGGGCAGAATTGTGTTGG 59.414 57.895 4.33 0.49 0.00 3.77
4300 4685 1.586028 CGGGCAGAATTGTGTTGGG 59.414 57.895 4.33 0.00 0.00 4.12
4301 4686 1.293179 GGGCAGAATTGTGTTGGGC 59.707 57.895 4.33 0.00 0.00 5.36
4302 4687 1.293179 GGCAGAATTGTGTTGGGCC 59.707 57.895 4.33 0.00 0.00 5.80
4303 4688 1.080569 GCAGAATTGTGTTGGGCCG 60.081 57.895 4.33 0.00 0.00 6.13
4304 4689 1.586028 CAGAATTGTGTTGGGCCGG 59.414 57.895 0.00 0.00 0.00 6.13
4305 4690 2.261361 GAATTGTGTTGGGCCGGC 59.739 61.111 21.18 21.18 0.00 6.13
4306 4691 2.203625 AATTGTGTTGGGCCGGCT 60.204 55.556 28.56 0.00 0.00 5.52
4307 4692 1.815817 GAATTGTGTTGGGCCGGCTT 61.816 55.000 28.56 9.21 0.00 4.35
4308 4693 1.815817 AATTGTGTTGGGCCGGCTTC 61.816 55.000 28.56 19.29 0.00 3.86
4311 4696 4.572571 TGTTGGGCCGGCTTCGTT 62.573 61.111 28.56 0.00 0.00 3.85
4312 4697 3.292159 GTTGGGCCGGCTTCGTTT 61.292 61.111 28.56 0.00 0.00 3.60
4313 4698 3.291383 TTGGGCCGGCTTCGTTTG 61.291 61.111 28.56 0.00 0.00 2.93
4316 4701 2.358984 GGCCGGCTTCGTTTGGTA 60.359 61.111 28.56 0.00 0.00 3.25
4317 4702 1.967494 GGCCGGCTTCGTTTGGTAA 60.967 57.895 28.56 0.00 0.00 2.85
4318 4703 1.310216 GGCCGGCTTCGTTTGGTAAT 61.310 55.000 28.56 0.00 0.00 1.89
4319 4704 0.179174 GCCGGCTTCGTTTGGTAATG 60.179 55.000 22.15 0.00 0.00 1.90
4320 4705 0.450184 CCGGCTTCGTTTGGTAATGG 59.550 55.000 0.00 0.00 0.00 3.16
4321 4706 0.450184 CGGCTTCGTTTGGTAATGGG 59.550 55.000 0.00 0.00 0.00 4.00
4322 4707 0.172578 GGCTTCGTTTGGTAATGGGC 59.827 55.000 0.00 0.00 0.00 5.36
4323 4708 1.173913 GCTTCGTTTGGTAATGGGCT 58.826 50.000 0.00 0.00 0.00 5.19
4324 4709 1.544246 GCTTCGTTTGGTAATGGGCTT 59.456 47.619 0.00 0.00 0.00 4.35
4325 4710 2.029380 GCTTCGTTTGGTAATGGGCTTT 60.029 45.455 0.00 0.00 0.00 3.51
4326 4711 3.574614 CTTCGTTTGGTAATGGGCTTTG 58.425 45.455 0.00 0.00 0.00 2.77
4327 4712 2.588620 TCGTTTGGTAATGGGCTTTGT 58.411 42.857 0.00 0.00 0.00 2.83
4328 4713 3.752665 TCGTTTGGTAATGGGCTTTGTA 58.247 40.909 0.00 0.00 0.00 2.41
4329 4714 4.142790 TCGTTTGGTAATGGGCTTTGTAA 58.857 39.130 0.00 0.00 0.00 2.41
4330 4715 4.216687 TCGTTTGGTAATGGGCTTTGTAAG 59.783 41.667 0.00 0.00 0.00 2.34
4331 4716 4.216687 CGTTTGGTAATGGGCTTTGTAAGA 59.783 41.667 0.00 0.00 0.00 2.10
4332 4717 5.619086 CGTTTGGTAATGGGCTTTGTAAGAG 60.619 44.000 0.00 0.00 0.00 2.85
4333 4718 3.352648 TGGTAATGGGCTTTGTAAGAGC 58.647 45.455 0.00 0.00 39.41 4.09
4334 4719 3.010138 TGGTAATGGGCTTTGTAAGAGCT 59.990 43.478 0.00 0.00 40.01 4.09
4335 4720 4.226394 TGGTAATGGGCTTTGTAAGAGCTA 59.774 41.667 0.00 0.00 40.01 3.32
4336 4721 4.816925 GGTAATGGGCTTTGTAAGAGCTAG 59.183 45.833 0.00 0.00 40.01 3.42
4337 4722 3.567478 ATGGGCTTTGTAAGAGCTAGG 57.433 47.619 0.00 0.00 40.01 3.02
4338 4723 1.065418 TGGGCTTTGTAAGAGCTAGGC 60.065 52.381 0.00 0.00 40.01 3.93
4339 4724 1.669604 GGCTTTGTAAGAGCTAGGCC 58.330 55.000 0.00 0.00 40.01 5.19
4340 4725 1.210722 GGCTTTGTAAGAGCTAGGCCT 59.789 52.381 11.78 11.78 40.01 5.19
4341 4726 2.434702 GGCTTTGTAAGAGCTAGGCCTA 59.565 50.000 13.09 13.09 40.01 3.93
4342 4727 3.493524 GGCTTTGTAAGAGCTAGGCCTAG 60.494 52.174 32.12 32.12 40.01 3.02
4354 4739 3.178539 GCCTAGCAAGCCACGTTC 58.821 61.111 0.00 0.00 0.00 3.95
4355 4740 1.376037 GCCTAGCAAGCCACGTTCT 60.376 57.895 0.00 0.00 0.00 3.01
4356 4741 1.639298 GCCTAGCAAGCCACGTTCTG 61.639 60.000 0.00 0.00 0.00 3.02
4357 4742 1.639298 CCTAGCAAGCCACGTTCTGC 61.639 60.000 0.00 0.00 0.00 4.26
4358 4743 0.671781 CTAGCAAGCCACGTTCTGCT 60.672 55.000 13.17 13.17 40.17 4.24
4359 4744 0.950555 TAGCAAGCCACGTTCTGCTG 60.951 55.000 16.58 7.99 38.00 4.41
4360 4745 2.546494 GCAAGCCACGTTCTGCTGT 61.546 57.895 4.89 0.00 38.00 4.40
4361 4746 1.571460 CAAGCCACGTTCTGCTGTC 59.429 57.895 4.89 0.00 38.00 3.51
4362 4747 1.956170 AAGCCACGTTCTGCTGTCG 60.956 57.895 4.89 8.60 38.00 4.35
4363 4748 3.414700 GCCACGTTCTGCTGTCGG 61.415 66.667 12.83 0.00 0.00 4.79
4364 4749 2.029073 CCACGTTCTGCTGTCGGT 59.971 61.111 12.83 0.00 0.00 4.69
4365 4750 1.594293 CCACGTTCTGCTGTCGGTT 60.594 57.895 12.83 0.00 0.00 4.44
4366 4751 0.319211 CCACGTTCTGCTGTCGGTTA 60.319 55.000 12.83 0.00 0.00 2.85
4367 4752 1.493772 CACGTTCTGCTGTCGGTTAA 58.506 50.000 12.83 0.00 0.00 2.01
4368 4753 2.066262 CACGTTCTGCTGTCGGTTAAT 58.934 47.619 12.83 0.00 0.00 1.40
4369 4754 2.092211 CACGTTCTGCTGTCGGTTAATC 59.908 50.000 12.83 0.00 0.00 1.75
4370 4755 1.320555 CGTTCTGCTGTCGGTTAATCG 59.679 52.381 0.43 0.43 0.00 3.34
4371 4756 1.060698 GTTCTGCTGTCGGTTAATCGC 59.939 52.381 2.43 0.00 0.00 4.58
4372 4757 0.530744 TCTGCTGTCGGTTAATCGCT 59.469 50.000 2.43 0.00 0.00 4.93
4373 4758 1.746787 TCTGCTGTCGGTTAATCGCTA 59.253 47.619 2.43 0.00 0.00 4.26
4374 4759 2.120232 CTGCTGTCGGTTAATCGCTAG 58.880 52.381 2.43 5.24 0.00 3.42
4375 4760 1.202371 TGCTGTCGGTTAATCGCTAGG 60.202 52.381 2.43 0.00 0.00 3.02
4376 4761 1.202382 GCTGTCGGTTAATCGCTAGGT 60.202 52.381 2.43 0.00 0.00 3.08
4377 4762 2.737679 GCTGTCGGTTAATCGCTAGGTT 60.738 50.000 2.43 0.00 0.00 3.50
4378 4763 2.858344 CTGTCGGTTAATCGCTAGGTTG 59.142 50.000 2.43 0.00 0.00 3.77
4379 4764 2.492881 TGTCGGTTAATCGCTAGGTTGA 59.507 45.455 2.43 0.00 0.00 3.18
4380 4765 2.856557 GTCGGTTAATCGCTAGGTTGAC 59.143 50.000 2.43 0.00 0.00 3.18
4381 4766 1.850441 CGGTTAATCGCTAGGTTGACG 59.150 52.381 0.00 0.00 0.00 4.35
4382 4767 1.591619 GGTTAATCGCTAGGTTGACGC 59.408 52.381 0.00 0.00 0.00 5.19
4383 4768 2.264813 GTTAATCGCTAGGTTGACGCA 58.735 47.619 0.00 0.00 0.00 5.24
4384 4769 1.917273 TAATCGCTAGGTTGACGCAC 58.083 50.000 0.00 0.00 0.00 5.34
4385 4770 1.076533 AATCGCTAGGTTGACGCACG 61.077 55.000 0.00 0.00 0.00 5.34
4386 4771 3.838795 CGCTAGGTTGACGCACGC 61.839 66.667 0.00 0.00 0.00 5.34
4387 4772 2.736995 GCTAGGTTGACGCACGCA 60.737 61.111 0.00 0.00 0.00 5.24
4388 4773 3.011760 GCTAGGTTGACGCACGCAC 62.012 63.158 0.00 0.00 0.00 5.34
4389 4774 2.716828 CTAGGTTGACGCACGCACG 61.717 63.158 0.00 0.00 39.50 5.34
4399 4784 3.636043 CACGCACGTTCGGCTGTT 61.636 61.111 13.06 0.00 0.00 3.16
4400 4785 3.636043 ACGCACGTTCGGCTGTTG 61.636 61.111 13.06 0.00 0.00 3.33
4401 4786 4.368808 CGCACGTTCGGCTGTTGG 62.369 66.667 0.00 0.00 0.00 3.77
4402 4787 3.276846 GCACGTTCGGCTGTTGGT 61.277 61.111 0.00 0.00 0.00 3.67
4403 4788 2.830285 GCACGTTCGGCTGTTGGTT 61.830 57.895 0.00 0.00 0.00 3.67
4404 4789 1.500512 GCACGTTCGGCTGTTGGTTA 61.501 55.000 0.00 0.00 0.00 2.85
4405 4790 0.938713 CACGTTCGGCTGTTGGTTAA 59.061 50.000 0.00 0.00 0.00 2.01
4406 4791 1.533731 CACGTTCGGCTGTTGGTTAAT 59.466 47.619 0.00 0.00 0.00 1.40
4407 4792 1.802365 ACGTTCGGCTGTTGGTTAATC 59.198 47.619 0.00 0.00 0.00 1.75
4408 4793 1.201877 CGTTCGGCTGTTGGTTAATCG 60.202 52.381 0.00 0.00 0.00 3.34
4409 4794 2.070783 GTTCGGCTGTTGGTTAATCGA 58.929 47.619 0.00 0.00 0.00 3.59
4410 4795 2.676342 GTTCGGCTGTTGGTTAATCGAT 59.324 45.455 0.00 0.00 0.00 3.59
4411 4796 2.276201 TCGGCTGTTGGTTAATCGATG 58.724 47.619 0.00 0.00 0.00 3.84
4412 4797 2.006888 CGGCTGTTGGTTAATCGATGT 58.993 47.619 0.00 0.00 0.00 3.06
4413 4798 2.418628 CGGCTGTTGGTTAATCGATGTT 59.581 45.455 0.00 0.00 0.00 2.71
4414 4799 3.119990 CGGCTGTTGGTTAATCGATGTTT 60.120 43.478 0.00 0.00 0.00 2.83
4415 4800 4.412207 GGCTGTTGGTTAATCGATGTTTC 58.588 43.478 0.00 0.00 0.00 2.78
4416 4801 4.156008 GGCTGTTGGTTAATCGATGTTTCT 59.844 41.667 0.00 0.00 0.00 2.52
4417 4802 5.353123 GGCTGTTGGTTAATCGATGTTTCTA 59.647 40.000 0.00 0.00 0.00 2.10
4418 4803 6.038271 GGCTGTTGGTTAATCGATGTTTCTAT 59.962 38.462 0.00 0.00 0.00 1.98
4419 4804 7.415206 GGCTGTTGGTTAATCGATGTTTCTATT 60.415 37.037 0.00 0.00 0.00 1.73
4420 4805 7.968405 GCTGTTGGTTAATCGATGTTTCTATTT 59.032 33.333 0.00 0.00 0.00 1.40
4421 4806 9.277565 CTGTTGGTTAATCGATGTTTCTATTTG 57.722 33.333 0.00 0.00 0.00 2.32
4422 4807 7.753132 TGTTGGTTAATCGATGTTTCTATTTGC 59.247 33.333 0.00 0.00 0.00 3.68
4423 4808 7.624360 TGGTTAATCGATGTTTCTATTTGCT 57.376 32.000 0.00 0.00 0.00 3.91
4424 4809 7.471721 TGGTTAATCGATGTTTCTATTTGCTG 58.528 34.615 0.00 0.00 0.00 4.41
4425 4810 7.335673 TGGTTAATCGATGTTTCTATTTGCTGA 59.664 33.333 0.00 0.00 0.00 4.26
4426 4811 8.345565 GGTTAATCGATGTTTCTATTTGCTGAT 58.654 33.333 0.00 0.00 0.00 2.90
4427 4812 9.374960 GTTAATCGATGTTTCTATTTGCTGATC 57.625 33.333 0.00 0.00 0.00 2.92
4428 4813 5.641777 TCGATGTTTCTATTTGCTGATCG 57.358 39.130 0.00 0.00 34.25 3.69
4429 4814 4.025730 TCGATGTTTCTATTTGCTGATCGC 60.026 41.667 0.00 3.07 39.77 4.58
4430 4815 4.025396 CGATGTTTCTATTTGCTGATCGCT 60.025 41.667 10.16 0.00 40.11 4.93
4431 4816 4.864916 TGTTTCTATTTGCTGATCGCTC 57.135 40.909 10.16 0.00 40.11 5.03
4432 4817 3.306973 TGTTTCTATTTGCTGATCGCTCG 59.693 43.478 10.16 0.00 40.11 5.03
4433 4818 1.491670 TCTATTTGCTGATCGCTCGC 58.508 50.000 10.16 1.11 40.11 5.03
4434 4819 0.510359 CTATTTGCTGATCGCTCGCC 59.490 55.000 10.16 0.00 40.11 5.54
4435 4820 0.104855 TATTTGCTGATCGCTCGCCT 59.895 50.000 10.16 0.00 40.11 5.52
4436 4821 1.156645 ATTTGCTGATCGCTCGCCTC 61.157 55.000 10.16 0.00 40.11 4.70
4437 4822 3.723235 TTGCTGATCGCTCGCCTCC 62.723 63.158 10.16 0.00 40.11 4.30
4438 4823 4.212913 GCTGATCGCTCGCCTCCA 62.213 66.667 2.84 0.00 35.14 3.86
4439 4824 2.279120 CTGATCGCTCGCCTCCAC 60.279 66.667 0.00 0.00 0.00 4.02
4440 4825 3.781770 CTGATCGCTCGCCTCCACC 62.782 68.421 0.00 0.00 0.00 4.61
4441 4826 3.532155 GATCGCTCGCCTCCACCT 61.532 66.667 0.00 0.00 0.00 4.00
4442 4827 3.781770 GATCGCTCGCCTCCACCTG 62.782 68.421 0.00 0.00 0.00 4.00
4450 4835 2.743928 CCTCCACCTGCGCTGTTC 60.744 66.667 9.73 0.00 0.00 3.18
4451 4836 3.114616 CTCCACCTGCGCTGTTCG 61.115 66.667 9.73 0.00 42.12 3.95
4452 4837 4.680237 TCCACCTGCGCTGTTCGG 62.680 66.667 9.73 8.21 38.94 4.30
4455 4840 4.626081 ACCTGCGCTGTTCGGCTT 62.626 61.111 9.73 0.00 38.94 4.35
4456 4841 3.793144 CCTGCGCTGTTCGGCTTC 61.793 66.667 9.73 0.00 38.94 3.86
4457 4842 4.139420 CTGCGCTGTTCGGCTTCG 62.139 66.667 9.73 0.00 38.94 3.79
4458 4843 4.656117 TGCGCTGTTCGGCTTCGA 62.656 61.111 9.73 0.00 41.62 3.71
4459 4844 4.135493 GCGCTGTTCGGCTTCGAC 62.135 66.667 0.00 0.00 43.17 4.20
4460 4845 2.430921 CGCTGTTCGGCTTCGACT 60.431 61.111 2.15 0.00 43.17 4.18
4461 4846 2.720758 CGCTGTTCGGCTTCGACTG 61.721 63.158 2.15 0.00 43.17 3.51
4462 4847 3.016474 GCTGTTCGGCTTCGACTGC 62.016 63.158 1.32 1.32 43.17 4.40
4463 4848 2.357034 TGTTCGGCTTCGACTGCC 60.357 61.111 16.28 16.28 43.17 4.85
4468 4853 4.327885 GGCTTCGACTGCCTATCG 57.672 61.111 18.31 0.00 46.38 2.92
4469 4854 1.951631 GGCTTCGACTGCCTATCGC 60.952 63.158 18.31 0.00 46.38 4.58
4470 4855 2.296480 GCTTCGACTGCCTATCGCG 61.296 63.158 0.00 0.00 42.08 5.87
4471 4856 2.278596 TTCGACTGCCTATCGCGC 60.279 61.111 0.00 0.00 42.08 6.86
4472 4857 4.607606 TCGACTGCCTATCGCGCG 62.608 66.667 26.76 26.76 42.08 6.86
4473 4858 4.607606 CGACTGCCTATCGCGCGA 62.608 66.667 36.65 36.65 42.08 5.87
4474 4859 2.278596 GACTGCCTATCGCGCGAA 60.279 61.111 38.07 23.48 42.08 4.70
4475 4860 1.876714 GACTGCCTATCGCGCGAAA 60.877 57.895 38.07 16.45 42.08 3.46
4476 4861 1.418342 GACTGCCTATCGCGCGAAAA 61.418 55.000 38.07 25.76 42.08 2.29
4477 4862 1.012234 CTGCCTATCGCGCGAAAAC 60.012 57.895 38.07 25.04 42.08 2.43
4478 4863 1.692148 CTGCCTATCGCGCGAAAACA 61.692 55.000 38.07 27.96 42.08 2.83
4479 4864 1.012234 GCCTATCGCGCGAAAACAG 60.012 57.895 38.07 27.32 0.00 3.16
4480 4865 1.418342 GCCTATCGCGCGAAAACAGA 61.418 55.000 38.07 12.85 0.00 3.41
4481 4866 0.297820 CCTATCGCGCGAAAACAGAC 59.702 55.000 38.07 0.00 0.00 3.51
4482 4867 1.269166 CTATCGCGCGAAAACAGACT 58.731 50.000 38.07 20.07 0.00 3.24
4483 4868 0.989164 TATCGCGCGAAAACAGACTG 59.011 50.000 38.07 0.00 0.00 3.51
4484 4869 1.626654 ATCGCGCGAAAACAGACTGG 61.627 55.000 38.07 0.00 0.00 4.00
4485 4870 2.127232 GCGCGAAAACAGACTGGC 60.127 61.111 12.10 0.00 0.00 4.85
4486 4871 2.170985 CGCGAAAACAGACTGGCG 59.829 61.111 0.00 7.98 37.56 5.69
4487 4872 2.556287 GCGAAAACAGACTGGCGG 59.444 61.111 7.51 0.00 0.00 6.13
4488 4873 2.556287 CGAAAACAGACTGGCGGC 59.444 61.111 7.51 0.00 0.00 6.53
4489 4874 2.556287 GAAAACAGACTGGCGGCG 59.444 61.111 7.51 0.51 0.00 6.46
4490 4875 2.966309 GAAAACAGACTGGCGGCGG 61.966 63.158 17.49 17.49 0.00 6.13
4518 4903 4.479993 CTGGCCTTGGCCTCGGAG 62.480 72.222 28.37 15.36 0.00 4.63
4544 4929 4.241555 GCGGCGGGATGAGTGGAT 62.242 66.667 9.78 0.00 0.00 3.41
4545 4930 2.029666 CGGCGGGATGAGTGGATC 59.970 66.667 0.00 0.00 0.00 3.36
4546 4931 2.502492 CGGCGGGATGAGTGGATCT 61.502 63.158 0.00 0.00 0.00 2.75
4547 4932 1.070445 GGCGGGATGAGTGGATCTG 59.930 63.158 0.00 0.00 0.00 2.90
4548 4933 1.690219 GGCGGGATGAGTGGATCTGT 61.690 60.000 0.00 0.00 0.00 3.41
4549 4934 0.249657 GCGGGATGAGTGGATCTGTC 60.250 60.000 0.00 0.00 0.00 3.51
4550 4935 0.390860 CGGGATGAGTGGATCTGTCC 59.609 60.000 0.00 0.00 45.31 4.02
4551 4936 0.761802 GGGATGAGTGGATCTGTCCC 59.238 60.000 0.00 0.00 44.41 4.46
4552 4937 0.390860 GGATGAGTGGATCTGTCCCG 59.609 60.000 0.00 0.00 44.41 5.14
4553 4938 0.390860 GATGAGTGGATCTGTCCCGG 59.609 60.000 0.00 0.00 44.41 5.73
4554 4939 1.050988 ATGAGTGGATCTGTCCCGGG 61.051 60.000 16.85 16.85 44.41 5.73
4555 4940 2.365635 AGTGGATCTGTCCCGGGG 60.366 66.667 23.50 6.77 44.41 5.73
4556 4941 3.480133 GTGGATCTGTCCCGGGGG 61.480 72.222 23.50 11.72 44.41 5.40
4557 4942 3.690206 TGGATCTGTCCCGGGGGA 61.690 66.667 23.50 16.96 44.41 4.81
4558 4943 2.844839 GGATCTGTCCCGGGGGAG 60.845 72.222 23.50 16.93 46.16 4.30
4559 4944 2.844839 GATCTGTCCCGGGGGAGG 60.845 72.222 23.50 8.99 46.16 4.30
4577 4962 2.644992 CAGGAACGGCTTGCAACC 59.355 61.111 0.00 1.17 0.00 3.77
4578 4963 1.898574 CAGGAACGGCTTGCAACCT 60.899 57.895 13.76 7.23 0.00 3.50
4579 4964 1.152756 AGGAACGGCTTGCAACCTT 60.153 52.632 13.76 4.44 0.00 3.50
4580 4965 1.007387 GGAACGGCTTGCAACCTTG 60.007 57.895 13.76 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.958147 AAGCAGGCATCCACGACCG 62.958 63.158 0.00 0.00 0.00 4.79
37 38 2.045926 AAGCAGGCATCCACGACC 60.046 61.111 0.00 0.00 0.00 4.79
38 39 2.456119 CGAAGCAGGCATCCACGAC 61.456 63.158 0.00 0.00 0.00 4.34
39 40 2.125552 CGAAGCAGGCATCCACGA 60.126 61.111 0.00 0.00 0.00 4.35
40 41 3.197790 CCGAAGCAGGCATCCACG 61.198 66.667 0.00 0.00 0.00 4.94
94 95 2.419739 GGCAGTCGACTCCTCCTCC 61.420 68.421 16.96 6.44 0.00 4.30
95 96 2.419739 GGGCAGTCGACTCCTCCTC 61.420 68.421 16.96 7.71 0.00 3.71
514 516 0.034574 CCGTTTCACCCCATCCATGA 60.035 55.000 0.00 0.00 0.00 3.07
517 519 1.377229 GTCCGTTTCACCCCATCCA 59.623 57.895 0.00 0.00 0.00 3.41
611 613 1.381076 GACCCCATTTTGTCCGGGA 59.619 57.895 0.00 0.00 43.21 5.14
675 681 5.003804 TCCTAAAACTTTCAGACAGATGGC 58.996 41.667 0.00 0.00 0.00 4.40
694 700 0.523072 CGACCGAACGACCTTTCCTA 59.477 55.000 0.00 0.00 35.09 2.94
703 709 4.688419 GACGCACCGACCGAACGA 62.688 66.667 0.00 0.00 35.09 3.85
705 711 3.593551 TACGACGCACCGACCGAAC 62.594 63.158 0.00 0.00 33.19 3.95
706 712 2.399511 TTTACGACGCACCGACCGAA 62.400 55.000 0.00 0.99 33.19 4.30
807 834 2.668550 GGTGGCGTTGGACTGACC 60.669 66.667 0.00 0.00 39.54 4.02
866 898 4.116328 TTCTCCGTCCAGCGAGCG 62.116 66.667 0.00 0.00 44.77 5.03
867 899 2.507324 GTTCTCCGTCCAGCGAGC 60.507 66.667 0.00 0.00 44.77 5.03
868 900 2.182030 GGTTCTCCGTCCAGCGAG 59.818 66.667 0.00 0.00 44.77 5.03
869 901 3.379445 GGGTTCTCCGTCCAGCGA 61.379 66.667 0.00 0.00 44.77 4.93
870 902 3.649277 CTGGGTTCTCCGTCCAGCG 62.649 68.421 0.00 0.00 41.12 5.18
965 1021 3.307242 GTCTGAGTGCGTGTGATTTATCC 59.693 47.826 0.00 0.00 0.00 2.59
966 1022 3.307242 GGTCTGAGTGCGTGTGATTTATC 59.693 47.826 0.00 0.00 0.00 1.75
968 1024 2.036604 TGGTCTGAGTGCGTGTGATTTA 59.963 45.455 0.00 0.00 0.00 1.40
971 1027 0.037882 CTGGTCTGAGTGCGTGTGAT 60.038 55.000 0.00 0.00 0.00 3.06
972 1028 1.363807 CTGGTCTGAGTGCGTGTGA 59.636 57.895 0.00 0.00 0.00 3.58
973 1029 2.313172 GCTGGTCTGAGTGCGTGTG 61.313 63.158 0.00 0.00 0.00 3.82
975 1031 2.025969 CTGCTGGTCTGAGTGCGTG 61.026 63.158 0.00 0.00 0.00 5.34
976 1032 2.341543 CTGCTGGTCTGAGTGCGT 59.658 61.111 0.00 0.00 0.00 5.24
977 1033 3.117171 GCTGCTGGTCTGAGTGCG 61.117 66.667 0.00 0.00 0.00 5.34
978 1034 2.031616 TGCTGCTGGTCTGAGTGC 59.968 61.111 0.00 0.00 0.00 4.40
979 1035 0.250209 AACTGCTGCTGGTCTGAGTG 60.250 55.000 11.29 0.00 0.00 3.51
980 1036 0.034616 GAACTGCTGCTGGTCTGAGT 59.965 55.000 16.19 0.00 0.00 3.41
982 1038 1.005748 CGAACTGCTGCTGGTCTGA 60.006 57.895 20.06 0.00 0.00 3.27
983 1039 2.031516 CCGAACTGCTGCTGGTCTG 61.032 63.158 20.06 11.55 0.00 3.51
984 1040 2.345244 CCGAACTGCTGCTGGTCT 59.655 61.111 20.06 1.01 0.00 3.85
985 1041 3.426568 GCCGAACTGCTGCTGGTC 61.427 66.667 13.84 13.84 0.00 4.02
1003 1059 0.038618 GAACGAATGTTTGGTGGGGC 60.039 55.000 0.00 0.00 38.78 5.80
1004 1060 1.539827 GAGAACGAATGTTTGGTGGGG 59.460 52.381 0.00 0.00 38.78 4.96
1006 1062 2.484264 GGAGAGAACGAATGTTTGGTGG 59.516 50.000 0.00 0.00 38.78 4.61
1017 1073 1.077644 CGGGGAGAGGAGAGAACGA 60.078 63.158 0.00 0.00 0.00 3.85
1019 1075 1.378124 CGACGGGGAGAGGAGAGAAC 61.378 65.000 0.00 0.00 0.00 3.01
1080 1139 0.179026 CACTGGCTGGAGGGATGATG 60.179 60.000 0.00 0.00 0.00 3.07
1082 1141 1.997311 CCACTGGCTGGAGGGATGA 60.997 63.158 0.00 0.00 43.95 2.92
1410 1494 1.553704 GGAAGTCAGTACCCAATCCGT 59.446 52.381 0.00 0.00 0.00 4.69
1417 1501 0.838987 TGGTGGGGAAGTCAGTACCC 60.839 60.000 0.00 0.00 43.64 3.69
1449 1533 3.743396 ACGAGCAGAAGAAGCAAAACTAG 59.257 43.478 0.00 0.00 0.00 2.57
1452 1536 3.340337 AACGAGCAGAAGAAGCAAAAC 57.660 42.857 0.00 0.00 0.00 2.43
1476 1560 4.562082 ACATGAATGATTGTTGCCTGTTG 58.438 39.130 0.00 0.00 0.00 3.33
1590 1823 1.135373 AGTCTCGGTGTGAAGCGTATG 60.135 52.381 0.00 0.00 0.00 2.39
1592 1825 0.956633 AAGTCTCGGTGTGAAGCGTA 59.043 50.000 0.00 0.00 0.00 4.42
1595 1828 1.704070 GAGAAGTCTCGGTGTGAAGC 58.296 55.000 0.00 0.00 32.78 3.86
1650 1883 2.030946 GGTGCGAATAGTTGAGCATGAC 59.969 50.000 0.00 0.00 41.88 3.06
1652 1885 1.004610 CGGTGCGAATAGTTGAGCATG 60.005 52.381 0.00 0.00 41.88 4.06
1653 1886 1.134818 TCGGTGCGAATAGTTGAGCAT 60.135 47.619 0.00 0.00 41.88 3.79
1715 1948 6.985117 TGAGAAATGCTTTGAGTTGCTAATT 58.015 32.000 0.00 0.00 0.00 1.40
1791 2025 7.143340 CAGTCAAATCAGCTTTTCTCAAATCA 58.857 34.615 0.00 0.00 0.00 2.57
1912 2149 2.029518 GGGGCACAAAGTTGCAGC 59.970 61.111 0.00 0.00 44.94 5.25
1913 2150 2.132996 TGGGGGCACAAAGTTGCAG 61.133 57.895 0.00 0.00 44.94 4.41
1945 2182 6.803320 CACAACTAATTGGCATCACTAGTTTG 59.197 38.462 0.00 0.00 40.42 2.93
1957 2194 3.067461 TGAACACACCACAACTAATTGGC 59.933 43.478 0.00 0.00 40.42 4.52
1962 2199 3.880490 GGATGTGAACACACCACAACTAA 59.120 43.478 9.83 0.00 46.12 2.24
1971 2208 0.179004 TGGGTGGGATGTGAACACAC 60.179 55.000 9.83 0.00 45.05 3.82
2011 2248 9.117183 GTAAAGGAAATTCAGGAATTATACGGT 57.883 33.333 7.62 0.00 39.88 4.83
2132 2371 1.229145 CCCTTTGCCCATTGGTCCA 60.229 57.895 1.20 0.00 0.00 4.02
2136 2375 2.607134 TGCCCCTTTGCCCATTGG 60.607 61.111 0.00 0.00 0.00 3.16
2155 2394 7.451877 TGAGATGTCTAAACTCTAAACTGAGGT 59.548 37.037 0.00 0.00 38.32 3.85
2156 2395 7.757624 GTGAGATGTCTAAACTCTAAACTGAGG 59.242 40.741 0.00 0.00 38.32 3.86
2157 2396 8.519526 AGTGAGATGTCTAAACTCTAAACTGAG 58.480 37.037 0.00 0.00 39.78 3.35
2201 2442 4.683129 GCACAAAGGACAGGGTTCAATTTT 60.683 41.667 0.00 0.00 0.00 1.82
2212 2453 1.901591 ATCTGTGGCACAAAGGACAG 58.098 50.000 22.31 8.10 45.54 3.51
2273 2514 1.621814 TGTAACTGAAGGTTCCCCTCG 59.378 52.381 0.00 0.00 41.56 4.63
2317 2566 6.762661 CCACAAAGGACAAACATCATTTTTCT 59.237 34.615 0.00 0.00 41.22 2.52
2328 2577 2.539476 CTTGTGCCACAAAGGACAAAC 58.461 47.619 11.99 0.00 37.69 2.93
2342 2591 0.449388 GTAGCCACTCATGCTTGTGC 59.551 55.000 0.00 0.00 40.23 4.57
2395 2644 1.271543 GCATGGCATAGCAGATGGGTA 60.272 52.381 14.33 0.00 0.00 3.69
2410 2659 1.045407 CAATCCCATTGGAGGCATGG 58.955 55.000 3.62 0.00 46.08 3.66
2461 2710 0.620556 TTCAGCTCCTGGCCCTAAAG 59.379 55.000 0.00 0.00 43.05 1.85
2489 2738 0.461516 ATCGTGCTGACATGGAGCAG 60.462 55.000 18.98 13.31 46.95 4.24
2508 2757 3.562557 CACGAGATGCCATCAATGATCAA 59.437 43.478 7.56 0.00 0.00 2.57
2533 2782 8.843733 CAAAACATGTTATCTTGTTGAGAATCG 58.156 33.333 12.39 0.00 40.27 3.34
2561 2810 7.141100 TCAAAATATTCGACAGAAGAAACCC 57.859 36.000 0.00 0.00 40.09 4.11
2579 2828 5.770162 CCTAGAGCGGGGAAAATATCAAAAT 59.230 40.000 0.00 0.00 0.00 1.82
2582 2831 3.971305 TCCTAGAGCGGGGAAAATATCAA 59.029 43.478 0.00 0.00 0.00 2.57
2583 2832 3.323979 GTCCTAGAGCGGGGAAAATATCA 59.676 47.826 0.00 0.00 33.01 2.15
2584 2833 3.323979 TGTCCTAGAGCGGGGAAAATATC 59.676 47.826 0.00 0.00 33.01 1.63
2585 2834 3.314693 TGTCCTAGAGCGGGGAAAATAT 58.685 45.455 0.00 0.00 33.01 1.28
2586 2835 2.754465 TGTCCTAGAGCGGGGAAAATA 58.246 47.619 0.00 0.00 33.01 1.40
2587 2836 1.580059 TGTCCTAGAGCGGGGAAAAT 58.420 50.000 0.00 0.00 33.01 1.82
2588 2837 1.354101 TTGTCCTAGAGCGGGGAAAA 58.646 50.000 0.00 0.00 33.01 2.29
2589 2838 1.580059 ATTGTCCTAGAGCGGGGAAA 58.420 50.000 0.00 0.00 33.01 3.13
2597 2846 4.025563 CACTCTCGTCGTATTGTCCTAGAG 60.026 50.000 0.00 0.00 36.23 2.43
2630 2890 6.741811 GCAAATGATGAATCTTATCGATGCTC 59.258 38.462 8.54 0.00 32.27 4.26
2652 2924 7.875554 TGTACTAGTTCACAGAACATATTGCAA 59.124 33.333 0.00 0.00 0.00 4.08
2661 2933 6.255887 GGCATATGTGTACTAGTTCACAGAAC 59.744 42.308 30.70 23.73 45.56 3.01
2676 2948 9.845740 TTACAGTTAATAATCTGGCATATGTGT 57.154 29.630 4.29 0.00 36.17 3.72
2718 3005 7.449395 CCCAATTTGCTGGATAGATGAATTCTA 59.551 37.037 7.05 0.00 38.96 2.10
2722 3009 5.461327 ACCCAATTTGCTGGATAGATGAAT 58.539 37.500 0.00 0.00 38.96 2.57
2815 3102 2.962421 TGAAGAACCCCCATTTGTCAAC 59.038 45.455 0.00 0.00 0.00 3.18
2823 3110 1.486726 GTCGAGATGAAGAACCCCCAT 59.513 52.381 0.00 0.00 0.00 4.00
2828 3115 1.202313 CCGAGGTCGAGATGAAGAACC 60.202 57.143 0.00 0.00 43.02 3.62
2834 3121 0.675837 ACGTTCCGAGGTCGAGATGA 60.676 55.000 0.00 0.00 43.02 2.92
2987 3274 4.184629 ACGCTAGGAAAGAAGTGCTAATG 58.815 43.478 0.00 0.00 0.00 1.90
2991 3278 3.851098 CTTACGCTAGGAAAGAAGTGCT 58.149 45.455 0.00 0.00 0.00 4.40
3000 3287 4.216411 AGGAAAATGCTTACGCTAGGAA 57.784 40.909 0.00 0.00 36.97 3.36
3037 3325 9.725019 ATCATGTTTCATACAAGAACTGAAGTA 57.275 29.630 0.00 0.00 40.89 2.24
3052 3340 7.503566 ACCGGATTTCTTATGATCATGTTTCAT 59.496 33.333 18.72 15.06 37.56 2.57
3065 3353 6.342906 TCGTTAATGTGACCGGATTTCTTAT 58.657 36.000 9.46 0.00 0.00 1.73
3069 3357 3.930848 ACTCGTTAATGTGACCGGATTTC 59.069 43.478 9.46 0.00 0.00 2.17
3071 3359 3.604875 ACTCGTTAATGTGACCGGATT 57.395 42.857 9.46 0.00 0.00 3.01
3072 3360 3.604875 AACTCGTTAATGTGACCGGAT 57.395 42.857 9.46 0.00 0.00 4.18
3073 3361 3.507233 AGTAACTCGTTAATGTGACCGGA 59.493 43.478 9.46 0.00 0.00 5.14
3074 3362 3.841643 AGTAACTCGTTAATGTGACCGG 58.158 45.455 0.00 0.00 0.00 5.28
3075 3363 7.274033 TGAAATAGTAACTCGTTAATGTGACCG 59.726 37.037 3.82 0.00 0.00 4.79
3076 3364 8.378421 GTGAAATAGTAACTCGTTAATGTGACC 58.622 37.037 3.82 0.00 0.00 4.02
3086 3374 8.827177 TCATTTTGAGTGAAATAGTAACTCGT 57.173 30.769 0.00 0.00 42.65 4.18
3104 3392 2.159653 GCGGTGCACTCTACTCATTTTG 60.160 50.000 17.98 0.00 0.00 2.44
3114 3402 1.405821 GACATACTAGCGGTGCACTCT 59.594 52.381 17.98 15.97 0.00 3.24
3115 3403 1.134367 TGACATACTAGCGGTGCACTC 59.866 52.381 17.98 9.13 0.00 3.51
3117 3405 2.225068 ATGACATACTAGCGGTGCAC 57.775 50.000 8.80 8.80 0.00 4.57
3120 3408 4.569761 ACACTATGACATACTAGCGGTG 57.430 45.455 0.00 8.11 0.00 4.94
3122 3410 5.239744 AGAGAACACTATGACATACTAGCGG 59.760 44.000 0.00 0.00 0.00 5.52
3123 3411 6.307031 AGAGAACACTATGACATACTAGCG 57.693 41.667 0.00 0.00 0.00 4.26
3128 3416 9.453325 GCTACTTTAGAGAACACTATGACATAC 57.547 37.037 0.00 0.00 0.00 2.39
3132 3420 8.812329 CAATGCTACTTTAGAGAACACTATGAC 58.188 37.037 0.00 0.00 0.00 3.06
3134 3422 7.981789 TCCAATGCTACTTTAGAGAACACTATG 59.018 37.037 0.00 0.00 0.00 2.23
3136 3424 7.476540 TCCAATGCTACTTTAGAGAACACTA 57.523 36.000 0.00 0.00 0.00 2.74
3192 3480 1.065418 ACTTGCCCGACATCTTTAGGG 60.065 52.381 0.00 0.00 46.44 3.53
3208 3496 0.617413 ATCCTCCTCAGCACCACTTG 59.383 55.000 0.00 0.00 0.00 3.16
3272 3560 2.811317 CCTCTCTCAACGCGGCAC 60.811 66.667 12.47 0.00 0.00 5.01
3279 3567 0.959553 TCACGGTGTCCTCTCTCAAC 59.040 55.000 8.17 0.00 0.00 3.18
3288 3576 1.588674 TCACATTGTTCACGGTGTCC 58.411 50.000 8.17 0.66 33.17 4.02
3321 3609 1.007580 GGCTTTCGACTCGGAATTCC 58.992 55.000 15.01 15.01 0.00 3.01
3324 3612 0.541863 ATGGGCTTTCGACTCGGAAT 59.458 50.000 0.00 0.00 0.00 3.01
3342 3630 0.101040 CATTGTGCCGCCGAAATGAT 59.899 50.000 4.54 0.00 32.86 2.45
3345 3633 1.212490 CACATTGTGCCGCCGAAAT 59.788 52.632 3.43 0.00 0.00 2.17
3456 3744 2.028130 GCTGAAGGAATCCGCCATG 58.972 57.895 0.00 0.00 32.60 3.66
3504 3792 1.935199 CGACACGGGTACAAAACTGTT 59.065 47.619 0.00 0.00 0.00 3.16
3518 3806 1.514228 CGAGACCATGACCGACACG 60.514 63.158 0.00 0.00 0.00 4.49
3519 3807 0.038526 AACGAGACCATGACCGACAC 60.039 55.000 0.00 0.00 0.00 3.67
3523 3858 1.278238 GCTAAACGAGACCATGACCG 58.722 55.000 0.00 0.00 0.00 4.79
3580 3936 4.263418 TGGATGTCACCAAGAACATCATGA 60.263 41.667 15.14 0.00 36.93 3.07
3584 3940 4.012374 ACATGGATGTCACCAAGAACATC 58.988 43.478 6.89 6.89 43.47 3.06
3613 3969 1.630878 CCAGACCTTGCTAGGGAAGTT 59.369 52.381 18.75 0.00 46.58 2.66
3614 3970 1.280457 CCAGACCTTGCTAGGGAAGT 58.720 55.000 18.75 0.00 46.58 3.01
3615 3971 0.543749 CCCAGACCTTGCTAGGGAAG 59.456 60.000 18.75 7.05 46.58 3.46
3617 3973 1.995626 GCCCAGACCTTGCTAGGGA 60.996 63.158 18.75 0.00 46.58 4.20
3618 3974 2.592308 GCCCAGACCTTGCTAGGG 59.408 66.667 18.75 2.04 46.58 3.53
3620 3976 0.535335 TTACGCCCAGACCTTGCTAG 59.465 55.000 0.00 0.00 0.00 3.42
3622 3978 1.296715 CTTACGCCCAGACCTTGCT 59.703 57.895 0.00 0.00 0.00 3.91
3624 3980 0.036306 AACCTTACGCCCAGACCTTG 59.964 55.000 0.00 0.00 0.00 3.61
3625 3981 0.769247 AAACCTTACGCCCAGACCTT 59.231 50.000 0.00 0.00 0.00 3.50
3626 3982 0.769247 AAAACCTTACGCCCAGACCT 59.231 50.000 0.00 0.00 0.00 3.85
3627 3983 0.879090 CAAAACCTTACGCCCAGACC 59.121 55.000 0.00 0.00 0.00 3.85
3628 3984 1.534163 GACAAAACCTTACGCCCAGAC 59.466 52.381 0.00 0.00 0.00 3.51
3629 3985 1.141254 TGACAAAACCTTACGCCCAGA 59.859 47.619 0.00 0.00 0.00 3.86
3630 3986 1.600023 TGACAAAACCTTACGCCCAG 58.400 50.000 0.00 0.00 0.00 4.45
3631 3987 1.950909 CTTGACAAAACCTTACGCCCA 59.049 47.619 0.00 0.00 0.00 5.36
3632 3988 1.951602 ACTTGACAAAACCTTACGCCC 59.048 47.619 0.00 0.00 0.00 6.13
3634 3990 4.151867 CCTCTACTTGACAAAACCTTACGC 59.848 45.833 0.00 0.00 0.00 4.42
3637 3993 6.989155 TCTCCTCTACTTGACAAAACCTTA 57.011 37.500 0.00 0.00 0.00 2.69
3652 4013 7.523293 TCATTTTTGTTGCATTTCTCCTCTA 57.477 32.000 0.00 0.00 0.00 2.43
3653 4014 6.409524 TCATTTTTGTTGCATTTCTCCTCT 57.590 33.333 0.00 0.00 0.00 3.69
3654 4015 7.063074 CAGATCATTTTTGTTGCATTTCTCCTC 59.937 37.037 0.00 0.00 0.00 3.71
3656 4017 6.647895 ACAGATCATTTTTGTTGCATTTCTCC 59.352 34.615 0.00 0.00 0.00 3.71
3704 4066 7.446931 TCTGTCCAAAAGAAAAGTGCATACATA 59.553 33.333 0.00 0.00 0.00 2.29
3707 4069 6.017109 TCTCTGTCCAAAAGAAAAGTGCATAC 60.017 38.462 0.00 0.00 0.00 2.39
3712 4074 6.799512 ACATTCTCTGTCCAAAAGAAAAGTG 58.200 36.000 0.00 0.00 33.10 3.16
3717 4079 8.868522 ATGAATACATTCTCTGTCCAAAAGAA 57.131 30.769 3.76 0.00 39.39 2.52
3741 4103 9.734984 TGATTCTGACTGCATATCATCAAATAT 57.265 29.630 1.54 0.00 0.00 1.28
3746 4108 6.183360 TGTCTGATTCTGACTGCATATCATCA 60.183 38.462 20.19 2.96 34.25 3.07
3753 4115 4.406326 AGAGATGTCTGATTCTGACTGCAT 59.594 41.667 20.19 9.18 34.25 3.96
3754 4116 3.768215 AGAGATGTCTGATTCTGACTGCA 59.232 43.478 20.19 5.36 34.25 4.41
3755 4117 4.362279 GAGAGATGTCTGATTCTGACTGC 58.638 47.826 20.19 13.54 34.25 4.40
3756 4118 4.335037 TCGAGAGATGTCTGATTCTGACTG 59.665 45.833 20.19 6.11 32.61 3.51
3757 4119 4.522114 TCGAGAGATGTCTGATTCTGACT 58.478 43.478 20.19 9.30 32.61 3.41
3759 4121 6.320926 AGAATTCGAGAGATGTCTGATTCTGA 59.679 38.462 15.91 0.00 41.60 3.27
3760 4122 6.506147 AGAATTCGAGAGATGTCTGATTCTG 58.494 40.000 15.91 0.00 41.60 3.02
3761 4123 6.239008 GGAGAATTCGAGAGATGTCTGATTCT 60.239 42.308 16.32 16.32 41.60 2.40
3762 4124 5.920273 GGAGAATTCGAGAGATGTCTGATTC 59.080 44.000 0.00 4.84 41.60 2.52
3765 4135 3.313803 CGGAGAATTCGAGAGATGTCTGA 59.686 47.826 0.00 0.00 42.19 3.27
3768 4138 3.972950 TCGGAGAATTCGAGAGATGTC 57.027 47.619 0.00 0.00 44.37 3.06
3815 4192 4.046462 CACTTGAACCAGCAAACTTCATG 58.954 43.478 0.00 0.00 0.00 3.07
3834 4211 3.838317 TGGAGATAGCCAACAAGTACACT 59.162 43.478 0.00 0.00 34.31 3.55
3835 4212 4.184629 CTGGAGATAGCCAACAAGTACAC 58.815 47.826 0.00 0.00 37.52 2.90
3857 4242 1.826487 GAGCTCTCGGACCTCCTCC 60.826 68.421 6.43 0.00 35.33 4.30
3958 4343 4.070552 GTCGCCGGAGTTCCAGCT 62.071 66.667 5.05 0.00 37.28 4.24
4038 4423 4.798682 AGCGGGGAGGGGGTACTG 62.799 72.222 0.00 0.00 0.00 2.74
4041 4426 3.768833 GATGAGCGGGGAGGGGGTA 62.769 68.421 0.00 0.00 0.00 3.69
4198 4583 4.473520 ATCGAGCCCGGGCAAGTG 62.474 66.667 45.13 30.11 44.88 3.16
4199 4584 4.473520 CATCGAGCCCGGGCAAGT 62.474 66.667 45.13 27.63 44.88 3.16
4209 4594 1.337817 CGTACGCATAGGCATCGAGC 61.338 60.000 0.52 0.00 41.24 5.03
4210 4595 1.337817 GCGTACGCATAGGCATCGAG 61.338 60.000 33.90 0.00 41.04 4.04
4211 4596 1.371267 GCGTACGCATAGGCATCGA 60.371 57.895 33.90 0.00 41.04 3.59
4212 4597 1.371758 AGCGTACGCATAGGCATCG 60.372 57.895 38.58 1.83 43.30 3.84
4213 4598 0.597637 ACAGCGTACGCATAGGCATC 60.598 55.000 38.58 9.27 43.30 3.91
4214 4599 0.671796 TACAGCGTACGCATAGGCAT 59.328 50.000 38.58 16.35 43.30 4.40
4215 4600 0.248743 GTACAGCGTACGCATAGGCA 60.249 55.000 38.58 18.26 43.30 4.75
4216 4601 1.266786 CGTACAGCGTACGCATAGGC 61.267 60.000 38.58 23.05 44.88 3.93
4217 4602 0.305617 TCGTACAGCGTACGCATAGG 59.694 55.000 38.58 31.04 44.88 2.57
4218 4603 1.969931 CATCGTACAGCGTACGCATAG 59.030 52.381 38.58 28.86 44.88 2.23
4219 4604 1.331447 ACATCGTACAGCGTACGCATA 59.669 47.619 38.58 27.38 44.88 3.14
4220 4605 0.099968 ACATCGTACAGCGTACGCAT 59.900 50.000 38.58 28.41 44.88 4.73
4221 4606 0.521867 GACATCGTACAGCGTACGCA 60.522 55.000 38.58 19.92 44.88 5.24
4222 4607 1.198608 GGACATCGTACAGCGTACGC 61.199 60.000 32.17 32.17 40.40 4.42
4223 4608 0.376152 AGGACATCGTACAGCGTACG 59.624 55.000 25.06 25.06 42.13 3.67
4224 4609 1.823828 CAGGACATCGTACAGCGTAC 58.176 55.000 8.27 8.27 42.13 3.67
4225 4610 0.099968 GCAGGACATCGTACAGCGTA 59.900 55.000 0.00 0.00 42.13 4.42
4226 4611 1.153823 GCAGGACATCGTACAGCGT 60.154 57.895 0.00 0.00 42.13 5.07
4227 4612 2.224217 CGCAGGACATCGTACAGCG 61.224 63.158 1.66 1.66 43.01 5.18
4228 4613 0.249073 ATCGCAGGACATCGTACAGC 60.249 55.000 0.00 0.00 0.00 4.40
4229 4614 2.918549 GCTATCGCAGGACATCGTACAG 60.919 54.545 0.00 0.00 35.78 2.74
4230 4615 1.001706 GCTATCGCAGGACATCGTACA 60.002 52.381 0.00 0.00 35.78 2.90
4231 4616 1.267261 AGCTATCGCAGGACATCGTAC 59.733 52.381 0.00 0.00 39.10 3.67
4232 4617 1.266989 CAGCTATCGCAGGACATCGTA 59.733 52.381 0.00 0.00 39.10 3.43
4233 4618 0.031314 CAGCTATCGCAGGACATCGT 59.969 55.000 0.00 0.00 39.10 3.73
4234 4619 0.312102 TCAGCTATCGCAGGACATCG 59.688 55.000 0.00 0.00 39.10 3.84
4235 4620 2.515926 TTCAGCTATCGCAGGACATC 57.484 50.000 0.00 0.00 39.10 3.06
4236 4621 2.988010 TTTCAGCTATCGCAGGACAT 57.012 45.000 0.00 0.00 39.10 3.06
4237 4622 2.760634 TTTTCAGCTATCGCAGGACA 57.239 45.000 0.00 0.00 39.10 4.02
4254 4639 2.221517 CACGGTCCGTACGTCAATTTTT 59.778 45.455 18.38 0.00 43.58 1.94
4255 4640 1.794116 CACGGTCCGTACGTCAATTTT 59.206 47.619 18.38 0.00 43.58 1.82
4256 4641 1.000385 TCACGGTCCGTACGTCAATTT 60.000 47.619 18.38 0.00 43.58 1.82
4257 4642 0.597568 TCACGGTCCGTACGTCAATT 59.402 50.000 18.38 0.00 43.58 2.32
4258 4643 0.813184 ATCACGGTCCGTACGTCAAT 59.187 50.000 18.38 1.46 43.58 2.57
4259 4644 0.597568 AATCACGGTCCGTACGTCAA 59.402 50.000 18.38 0.00 43.58 3.18
4260 4645 0.597568 AAATCACGGTCCGTACGTCA 59.402 50.000 18.38 0.00 43.58 4.35
4261 4646 1.262882 GAAATCACGGTCCGTACGTC 58.737 55.000 18.38 8.58 43.58 4.34
4262 4647 0.109132 GGAAATCACGGTCCGTACGT 60.109 55.000 18.38 2.89 46.82 3.57
4263 4648 0.803380 GGGAAATCACGGTCCGTACG 60.803 60.000 18.38 8.69 38.32 3.67
4264 4649 0.803380 CGGGAAATCACGGTCCGTAC 60.803 60.000 18.38 6.41 38.32 3.67
4265 4650 1.512230 CGGGAAATCACGGTCCGTA 59.488 57.895 18.38 6.32 38.32 4.02
4266 4651 2.263540 CGGGAAATCACGGTCCGT 59.736 61.111 12.23 12.23 42.36 4.69
4272 4657 0.748005 ATTCTGCCCGGGAAATCACG 60.748 55.000 29.31 0.00 43.52 4.35
4273 4658 1.134946 CAATTCTGCCCGGGAAATCAC 59.865 52.381 29.31 5.43 0.00 3.06
4274 4659 1.272425 ACAATTCTGCCCGGGAAATCA 60.272 47.619 29.31 12.11 0.00 2.57
4275 4660 1.134946 CACAATTCTGCCCGGGAAATC 59.865 52.381 29.31 6.82 0.00 2.17
4276 4661 1.185315 CACAATTCTGCCCGGGAAAT 58.815 50.000 29.31 17.38 0.00 2.17
4277 4662 0.178975 ACACAATTCTGCCCGGGAAA 60.179 50.000 29.31 15.66 0.00 3.13
4278 4663 0.178975 AACACAATTCTGCCCGGGAA 60.179 50.000 29.31 15.24 0.00 3.97
4279 4664 0.893270 CAACACAATTCTGCCCGGGA 60.893 55.000 29.31 8.79 0.00 5.14
4280 4665 1.586028 CAACACAATTCTGCCCGGG 59.414 57.895 19.09 19.09 0.00 5.73
4281 4666 1.586028 CCAACACAATTCTGCCCGG 59.414 57.895 0.00 0.00 0.00 5.73
4282 4667 1.586028 CCCAACACAATTCTGCCCG 59.414 57.895 0.00 0.00 0.00 6.13
4283 4668 1.293179 GCCCAACACAATTCTGCCC 59.707 57.895 0.00 0.00 0.00 5.36
4284 4669 1.293179 GGCCCAACACAATTCTGCC 59.707 57.895 0.00 0.00 0.00 4.85
4285 4670 1.080569 CGGCCCAACACAATTCTGC 60.081 57.895 0.00 0.00 0.00 4.26
4286 4671 1.586028 CCGGCCCAACACAATTCTG 59.414 57.895 0.00 0.00 0.00 3.02
4287 4672 2.275380 GCCGGCCCAACACAATTCT 61.275 57.895 18.11 0.00 0.00 2.40
4288 4673 1.815817 AAGCCGGCCCAACACAATTC 61.816 55.000 26.15 0.00 0.00 2.17
4289 4674 1.815817 GAAGCCGGCCCAACACAATT 61.816 55.000 26.15 7.24 0.00 2.32
4290 4675 2.203625 AAGCCGGCCCAACACAAT 60.204 55.556 26.15 0.00 0.00 2.71
4291 4676 2.909965 GAAGCCGGCCCAACACAA 60.910 61.111 26.15 0.00 0.00 3.33
4294 4679 4.572571 AACGAAGCCGGCCCAACA 62.573 61.111 26.15 0.00 40.78 3.33
4295 4680 3.292159 AAACGAAGCCGGCCCAAC 61.292 61.111 26.15 11.27 40.78 3.77
4296 4681 3.291383 CAAACGAAGCCGGCCCAA 61.291 61.111 26.15 0.00 40.78 4.12
4298 4683 3.905437 TACCAAACGAAGCCGGCCC 62.905 63.158 26.15 15.09 40.78 5.80
4299 4684 1.310216 ATTACCAAACGAAGCCGGCC 61.310 55.000 26.15 7.92 40.78 6.13
4300 4685 0.179174 CATTACCAAACGAAGCCGGC 60.179 55.000 21.89 21.89 40.78 6.13
4301 4686 0.450184 CCATTACCAAACGAAGCCGG 59.550 55.000 0.00 0.00 40.78 6.13
4302 4687 0.450184 CCCATTACCAAACGAAGCCG 59.550 55.000 0.00 0.00 42.50 5.52
4303 4688 0.172578 GCCCATTACCAAACGAAGCC 59.827 55.000 0.00 0.00 0.00 4.35
4304 4689 1.173913 AGCCCATTACCAAACGAAGC 58.826 50.000 0.00 0.00 0.00 3.86
4305 4690 3.005367 ACAAAGCCCATTACCAAACGAAG 59.995 43.478 0.00 0.00 0.00 3.79
4306 4691 2.959707 ACAAAGCCCATTACCAAACGAA 59.040 40.909 0.00 0.00 0.00 3.85
4307 4692 2.588620 ACAAAGCCCATTACCAAACGA 58.411 42.857 0.00 0.00 0.00 3.85
4308 4693 4.216687 TCTTACAAAGCCCATTACCAAACG 59.783 41.667 0.00 0.00 0.00 3.60
4309 4694 5.709966 CTCTTACAAAGCCCATTACCAAAC 58.290 41.667 0.00 0.00 0.00 2.93
4310 4695 4.219725 GCTCTTACAAAGCCCATTACCAAA 59.780 41.667 0.00 0.00 33.53 3.28
4311 4696 3.761752 GCTCTTACAAAGCCCATTACCAA 59.238 43.478 0.00 0.00 33.53 3.67
4312 4697 3.010138 AGCTCTTACAAAGCCCATTACCA 59.990 43.478 0.00 0.00 40.75 3.25
4313 4698 3.621558 AGCTCTTACAAAGCCCATTACC 58.378 45.455 0.00 0.00 40.75 2.85
4314 4699 4.816925 CCTAGCTCTTACAAAGCCCATTAC 59.183 45.833 0.00 0.00 40.75 1.89
4315 4700 4.686122 GCCTAGCTCTTACAAAGCCCATTA 60.686 45.833 0.00 0.00 40.75 1.90
4316 4701 3.891049 CCTAGCTCTTACAAAGCCCATT 58.109 45.455 0.00 0.00 40.75 3.16
4317 4702 2.422093 GCCTAGCTCTTACAAAGCCCAT 60.422 50.000 0.00 0.00 40.75 4.00
4318 4703 1.065418 GCCTAGCTCTTACAAAGCCCA 60.065 52.381 0.00 0.00 40.75 5.36
4319 4704 1.669604 GCCTAGCTCTTACAAAGCCC 58.330 55.000 0.00 0.00 40.75 5.19
4320 4705 1.210722 AGGCCTAGCTCTTACAAAGCC 59.789 52.381 1.29 0.00 40.75 4.35
4321 4706 2.700722 AGGCCTAGCTCTTACAAAGC 57.299 50.000 1.29 0.00 40.14 3.51
4336 4721 2.359975 AACGTGGCTTGCTAGGCC 60.360 61.111 18.41 12.85 45.93 5.19
4337 4722 1.376037 AGAACGTGGCTTGCTAGGC 60.376 57.895 14.70 14.70 46.64 3.93
4338 4723 1.639298 GCAGAACGTGGCTTGCTAGG 61.639 60.000 0.00 0.00 0.00 3.02
4339 4724 0.671781 AGCAGAACGTGGCTTGCTAG 60.672 55.000 12.74 0.00 36.92 3.42
4340 4725 0.950555 CAGCAGAACGTGGCTTGCTA 60.951 55.000 13.64 0.00 38.56 3.49
4341 4726 2.111878 AGCAGAACGTGGCTTGCT 59.888 55.556 9.65 9.65 36.92 3.91
4342 4727 2.253452 CAGCAGAACGTGGCTTGC 59.747 61.111 6.87 6.36 38.56 4.01
4343 4728 1.571460 GACAGCAGAACGTGGCTTG 59.429 57.895 6.87 6.12 38.56 4.01
4344 4729 1.956170 CGACAGCAGAACGTGGCTT 60.956 57.895 6.87 0.65 38.56 4.35
4345 4730 2.356313 CGACAGCAGAACGTGGCT 60.356 61.111 4.01 4.01 42.06 4.75
4346 4731 3.414700 CCGACAGCAGAACGTGGC 61.415 66.667 0.00 0.00 0.00 5.01
4347 4732 0.319211 TAACCGACAGCAGAACGTGG 60.319 55.000 0.00 0.00 0.00 4.94
4348 4733 1.493772 TTAACCGACAGCAGAACGTG 58.506 50.000 0.00 0.00 0.00 4.49
4349 4734 2.334838 GATTAACCGACAGCAGAACGT 58.665 47.619 0.00 0.00 0.00 3.99
4350 4735 1.320555 CGATTAACCGACAGCAGAACG 59.679 52.381 0.00 0.00 0.00 3.95
4351 4736 1.060698 GCGATTAACCGACAGCAGAAC 59.939 52.381 0.00 0.00 0.00 3.01
4352 4737 1.067142 AGCGATTAACCGACAGCAGAA 60.067 47.619 0.00 0.00 0.00 3.02
4353 4738 0.530744 AGCGATTAACCGACAGCAGA 59.469 50.000 0.00 0.00 0.00 4.26
4354 4739 2.120232 CTAGCGATTAACCGACAGCAG 58.880 52.381 0.00 0.00 0.00 4.24
4355 4740 1.202371 CCTAGCGATTAACCGACAGCA 60.202 52.381 0.00 0.00 0.00 4.41
4356 4741 1.202382 ACCTAGCGATTAACCGACAGC 60.202 52.381 0.00 0.00 0.00 4.40
4357 4742 2.858344 CAACCTAGCGATTAACCGACAG 59.142 50.000 0.00 0.00 0.00 3.51
4358 4743 2.492881 TCAACCTAGCGATTAACCGACA 59.507 45.455 0.00 0.00 0.00 4.35
4359 4744 2.856557 GTCAACCTAGCGATTAACCGAC 59.143 50.000 0.00 0.00 0.00 4.79
4360 4745 2.478370 CGTCAACCTAGCGATTAACCGA 60.478 50.000 0.00 0.00 0.00 4.69
4361 4746 1.850441 CGTCAACCTAGCGATTAACCG 59.150 52.381 0.00 0.00 0.00 4.44
4362 4747 1.591619 GCGTCAACCTAGCGATTAACC 59.408 52.381 0.00 0.00 0.00 2.85
4363 4748 2.028883 GTGCGTCAACCTAGCGATTAAC 59.971 50.000 0.00 0.00 0.00 2.01
4364 4749 2.264813 GTGCGTCAACCTAGCGATTAA 58.735 47.619 0.00 0.00 0.00 1.40
4365 4750 1.796253 CGTGCGTCAACCTAGCGATTA 60.796 52.381 0.00 0.00 0.00 1.75
4366 4751 1.076533 CGTGCGTCAACCTAGCGATT 61.077 55.000 0.00 0.00 0.00 3.34
4367 4752 1.516386 CGTGCGTCAACCTAGCGAT 60.516 57.895 0.00 0.00 0.00 4.58
4368 4753 2.126618 CGTGCGTCAACCTAGCGA 60.127 61.111 0.00 0.00 0.00 4.93
4369 4754 3.838795 GCGTGCGTCAACCTAGCG 61.839 66.667 0.00 0.00 0.00 4.26
4370 4755 2.736995 TGCGTGCGTCAACCTAGC 60.737 61.111 0.00 0.00 0.00 3.42
4371 4756 2.716828 CGTGCGTGCGTCAACCTAG 61.717 63.158 0.00 0.00 0.00 3.02
4372 4757 2.731721 CGTGCGTGCGTCAACCTA 60.732 61.111 0.00 0.00 0.00 3.08
4373 4758 4.884257 ACGTGCGTGCGTCAACCT 62.884 61.111 0.00 0.00 41.71 3.50
4374 4759 3.833176 GAACGTGCGTGCGTCAACC 62.833 63.158 6.84 0.00 45.00 3.77
4375 4760 2.423039 GAACGTGCGTGCGTCAAC 60.423 61.111 6.84 0.24 45.00 3.18
4376 4761 3.978764 CGAACGTGCGTGCGTCAA 61.979 61.111 16.04 0.00 45.00 3.18
4382 4767 3.636043 AACAGCCGAACGTGCGTG 61.636 61.111 16.18 10.19 0.00 5.34
4383 4768 3.636043 CAACAGCCGAACGTGCGT 61.636 61.111 16.18 0.00 0.00 5.24
4384 4769 4.368808 CCAACAGCCGAACGTGCG 62.369 66.667 9.60 9.60 0.00 5.34
4385 4770 1.500512 TAACCAACAGCCGAACGTGC 61.501 55.000 0.00 0.00 0.00 5.34
4386 4771 0.938713 TTAACCAACAGCCGAACGTG 59.061 50.000 0.00 0.00 0.00 4.49
4387 4772 1.802365 GATTAACCAACAGCCGAACGT 59.198 47.619 0.00 0.00 0.00 3.99
4388 4773 1.201877 CGATTAACCAACAGCCGAACG 60.202 52.381 0.00 0.00 0.00 3.95
4389 4774 2.070783 TCGATTAACCAACAGCCGAAC 58.929 47.619 0.00 0.00 0.00 3.95
4390 4775 2.459060 TCGATTAACCAACAGCCGAA 57.541 45.000 0.00 0.00 0.00 4.30
4391 4776 2.276201 CATCGATTAACCAACAGCCGA 58.724 47.619 0.00 0.00 0.00 5.54
4392 4777 2.006888 ACATCGATTAACCAACAGCCG 58.993 47.619 0.00 0.00 0.00 5.52
4393 4778 4.156008 AGAAACATCGATTAACCAACAGCC 59.844 41.667 0.00 0.00 0.00 4.85
4394 4779 5.296813 AGAAACATCGATTAACCAACAGC 57.703 39.130 0.00 0.00 0.00 4.40
4395 4780 9.277565 CAAATAGAAACATCGATTAACCAACAG 57.722 33.333 0.00 0.00 0.00 3.16
4396 4781 7.753132 GCAAATAGAAACATCGATTAACCAACA 59.247 33.333 0.00 0.00 0.00 3.33
4397 4782 7.968405 AGCAAATAGAAACATCGATTAACCAAC 59.032 33.333 0.00 0.00 0.00 3.77
4398 4783 7.967854 CAGCAAATAGAAACATCGATTAACCAA 59.032 33.333 0.00 0.00 0.00 3.67
4399 4784 7.335673 TCAGCAAATAGAAACATCGATTAACCA 59.664 33.333 0.00 0.00 0.00 3.67
4400 4785 7.693952 TCAGCAAATAGAAACATCGATTAACC 58.306 34.615 0.00 0.00 0.00 2.85
4401 4786 9.374960 GATCAGCAAATAGAAACATCGATTAAC 57.625 33.333 0.00 0.00 0.00 2.01
4402 4787 8.275632 CGATCAGCAAATAGAAACATCGATTAA 58.724 33.333 0.00 0.00 35.08 1.40
4403 4788 7.787084 CGATCAGCAAATAGAAACATCGATTA 58.213 34.615 0.00 0.00 35.08 1.75
4404 4789 6.653183 CGATCAGCAAATAGAAACATCGATT 58.347 36.000 0.00 0.00 35.08 3.34
4405 4790 6.220579 CGATCAGCAAATAGAAACATCGAT 57.779 37.500 0.00 0.00 35.08 3.59
4406 4791 5.641777 CGATCAGCAAATAGAAACATCGA 57.358 39.130 0.00 0.00 35.08 3.59
4422 4807 2.279120 GTGGAGGCGAGCGATCAG 60.279 66.667 0.00 0.00 0.00 2.90
4423 4808 3.838271 GGTGGAGGCGAGCGATCA 61.838 66.667 0.00 0.00 0.00 2.92
4424 4809 3.532155 AGGTGGAGGCGAGCGATC 61.532 66.667 0.00 0.00 0.00 3.69
4425 4810 3.842923 CAGGTGGAGGCGAGCGAT 61.843 66.667 0.00 0.00 0.00 4.58
4438 4823 4.626081 AAGCCGAACAGCGCAGGT 62.626 61.111 11.47 0.00 39.11 4.00
4439 4824 3.793144 GAAGCCGAACAGCGCAGG 61.793 66.667 11.47 3.29 39.11 4.85
4440 4825 4.139420 CGAAGCCGAACAGCGCAG 62.139 66.667 11.47 3.33 39.11 5.18
4441 4826 4.656117 TCGAAGCCGAACAGCGCA 62.656 61.111 11.47 0.00 42.51 6.09
4452 4837 2.296480 CGCGATAGGCAGTCGAAGC 61.296 63.158 14.40 2.65 43.84 3.86
4453 4838 2.296480 GCGCGATAGGCAGTCGAAG 61.296 63.158 12.10 8.74 43.84 3.79
4454 4839 2.278596 GCGCGATAGGCAGTCGAA 60.279 61.111 12.10 0.00 43.84 3.71
4455 4840 4.607606 CGCGCGATAGGCAGTCGA 62.608 66.667 28.94 0.00 43.84 4.20
4456 4841 4.607606 TCGCGCGATAGGCAGTCG 62.608 66.667 31.40 0.00 43.84 4.18
4457 4842 1.418342 TTTTCGCGCGATAGGCAGTC 61.418 55.000 35.21 0.00 43.84 3.51
4458 4843 1.447140 TTTTCGCGCGATAGGCAGT 60.447 52.632 35.21 0.00 43.84 4.40
4459 4844 1.012234 GTTTTCGCGCGATAGGCAG 60.012 57.895 35.21 0.00 43.84 4.85
4460 4845 1.692148 CTGTTTTCGCGCGATAGGCA 61.692 55.000 35.21 26.09 43.84 4.75
4461 4846 1.012234 CTGTTTTCGCGCGATAGGC 60.012 57.895 35.21 23.23 38.69 3.93
4462 4847 0.297820 GTCTGTTTTCGCGCGATAGG 59.702 55.000 35.21 20.51 0.00 2.57
4463 4848 1.007011 CAGTCTGTTTTCGCGCGATAG 60.007 52.381 35.21 26.21 0.00 2.08
4464 4849 0.989164 CAGTCTGTTTTCGCGCGATA 59.011 50.000 35.21 26.87 0.00 2.92
4465 4850 1.626654 CCAGTCTGTTTTCGCGCGAT 61.627 55.000 35.21 13.56 0.00 4.58
4466 4851 2.307309 CCAGTCTGTTTTCGCGCGA 61.307 57.895 31.40 31.40 0.00 5.87
4467 4852 2.170985 CCAGTCTGTTTTCGCGCG 59.829 61.111 26.76 26.76 0.00 6.86
4468 4853 2.127232 GCCAGTCTGTTTTCGCGC 60.127 61.111 0.00 0.00 0.00 6.86
4469 4854 2.170985 CGCCAGTCTGTTTTCGCG 59.829 61.111 0.00 0.00 0.00 5.87
4470 4855 2.556287 CCGCCAGTCTGTTTTCGC 59.444 61.111 0.00 0.00 0.00 4.70
4471 4856 2.556287 GCCGCCAGTCTGTTTTCG 59.444 61.111 0.00 0.00 0.00 3.46
4472 4857 2.556287 CGCCGCCAGTCTGTTTTC 59.444 61.111 0.00 0.00 0.00 2.29
4473 4858 2.978010 CCGCCGCCAGTCTGTTTT 60.978 61.111 0.00 0.00 0.00 2.43
4527 4912 4.241555 ATCCACTCATCCCGCCGC 62.242 66.667 0.00 0.00 0.00 6.53
4528 4913 2.029666 GATCCACTCATCCCGCCG 59.970 66.667 0.00 0.00 0.00 6.46
4529 4914 1.070445 CAGATCCACTCATCCCGCC 59.930 63.158 0.00 0.00 0.00 6.13
4530 4915 0.249657 GACAGATCCACTCATCCCGC 60.250 60.000 0.00 0.00 0.00 6.13
4531 4916 0.390860 GGACAGATCCACTCATCCCG 59.609 60.000 0.00 0.00 45.47 5.14
4541 4926 2.844839 CTCCCCCGGGACAGATCC 60.845 72.222 26.32 0.00 45.42 3.36
4542 4927 2.844839 CCTCCCCCGGGACAGATC 60.845 72.222 26.32 0.00 39.76 2.75
4554 4939 4.035102 AAGCCGTTCCTGCCTCCC 62.035 66.667 0.00 0.00 0.00 4.30
4555 4940 2.747855 CAAGCCGTTCCTGCCTCC 60.748 66.667 0.00 0.00 0.00 4.30
4556 4941 3.435186 GCAAGCCGTTCCTGCCTC 61.435 66.667 0.00 0.00 0.00 4.70
4557 4942 3.790416 TTGCAAGCCGTTCCTGCCT 62.790 57.895 0.00 0.00 0.00 4.75
4558 4943 3.294493 TTGCAAGCCGTTCCTGCC 61.294 61.111 0.00 0.00 0.00 4.85
4559 4944 2.050077 GTTGCAAGCCGTTCCTGC 60.050 61.111 0.00 0.00 0.00 4.85
4560 4945 1.455383 AAGGTTGCAAGCCGTTCCTG 61.455 55.000 24.26 0.00 0.00 3.86
4561 4946 1.152756 AAGGTTGCAAGCCGTTCCT 60.153 52.632 24.26 11.47 0.00 3.36
4562 4947 1.007387 CAAGGTTGCAAGCCGTTCC 60.007 57.895 24.26 9.19 0.00 3.62
4563 4948 4.633980 CAAGGTTGCAAGCCGTTC 57.366 55.556 24.26 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.