Multiple sequence alignment - TraesCS3B01G493600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G493600 chr3B 100.000 2288 0 0 1 2288 739024567 739022280 0.000000e+00 4226
1 TraesCS3B01G493600 chr3B 91.149 531 43 1 431 961 425456980 425456454 0.000000e+00 717
2 TraesCS3B01G493600 chr3B 87.333 150 15 4 1545 1692 705304610 705304463 3.910000e-38 169
3 TraesCS3B01G493600 chr7D 94.030 603 28 5 1691 2288 362364043 362363444 0.000000e+00 907
4 TraesCS3B01G493600 chr7D 87.238 478 55 5 435 909 590081579 590081105 7.190000e-150 540
5 TraesCS3B01G493600 chr5B 92.347 588 44 1 432 1019 598746910 598747496 0.000000e+00 835
6 TraesCS3B01G493600 chr5B 89.130 184 17 3 1508 1690 256053920 256054101 2.290000e-55 226
7 TraesCS3B01G493600 chr4D 91.749 606 43 4 1689 2288 3915082 3914478 0.000000e+00 835
8 TraesCS3B01G493600 chr4D 88.250 400 47 0 412 811 463705469 463705868 1.590000e-131 479
9 TraesCS3B01G493600 chr1B 92.920 565 34 5 1693 2252 456189965 456189402 0.000000e+00 817
10 TraesCS3B01G493600 chr5A 91.196 602 45 7 1690 2285 562854668 562855267 0.000000e+00 811
11 TraesCS3B01G493600 chr5A 91.447 152 12 1 1541 1692 34984353 34984503 8.280000e-50 207
12 TraesCS3B01G493600 chr7B 91.181 601 45 7 1695 2288 742145014 742144415 0.000000e+00 809
13 TraesCS3B01G493600 chr7B 91.000 600 46 7 1695 2288 720141366 720140769 0.000000e+00 802
14 TraesCS3B01G493600 chr7B 88.263 213 21 4 1479 1690 38624885 38624676 3.770000e-63 252
15 TraesCS3B01G493600 chr4B 90.759 606 44 10 1690 2285 560024550 560025153 0.000000e+00 798
16 TraesCS3B01G493600 chr4B 91.154 520 44 2 431 949 472005901 472005383 0.000000e+00 704
17 TraesCS3B01G493600 chr6B 90.833 600 44 10 1695 2285 508614718 508615315 0.000000e+00 793
18 TraesCS3B01G493600 chr6B 93.023 516 30 5 1773 2285 55671187 55671699 0.000000e+00 749
19 TraesCS3B01G493600 chr6B 91.248 537 34 6 433 968 695476506 695475982 0.000000e+00 719
20 TraesCS3B01G493600 chr6B 94.751 362 15 1 976 1337 181472086 181472443 5.520000e-156 560
21 TraesCS3B01G493600 chr6B 87.248 149 16 3 1545 1692 40203055 40203201 1.410000e-37 167
22 TraesCS3B01G493600 chr6D 89.376 433 46 0 432 864 18670332 18670764 1.550000e-151 545
23 TraesCS3B01G493600 chr6D 93.681 364 20 1 976 1336 97263026 97263389 2.000000e-150 542
24 TraesCS3B01G493600 chr1D 88.000 450 48 5 435 881 372433069 372433515 5.600000e-146 527
25 TraesCS3B01G493600 chr2B 85.921 483 56 11 433 908 707173012 707173489 2.620000e-139 505
26 TraesCS3B01G493600 chr2B 90.055 181 16 2 791 970 43692082 43692261 1.370000e-57 233
27 TraesCS3B01G493600 chr6A 90.400 375 21 7 976 1335 116336436 116336810 1.590000e-131 479
28 TraesCS3B01G493600 chr2D 93.043 230 14 1 1692 1919 620017412 620017183 3.640000e-88 335
29 TraesCS3B01G493600 chr3D 81.330 466 22 26 3 436 556024851 556024419 3.670000e-83 318
30 TraesCS3B01G493600 chr3D 82.723 191 24 9 1507 1690 513625988 513626176 6.540000e-36 161
31 TraesCS3B01G493600 chr3A 78.390 472 15 40 19 436 692959400 692958962 2.290000e-55 226
32 TraesCS3B01G493600 chr4A 85.714 189 25 2 1503 1690 583199811 583199624 4.990000e-47 198
33 TraesCS3B01G493600 chr4A 86.928 153 18 2 1545 1697 469517523 469517373 1.090000e-38 171
34 TraesCS3B01G493600 chr5D 86.486 185 18 7 1508 1690 445036013 445036192 1.790000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G493600 chr3B 739022280 739024567 2287 True 4226 4226 100.000 1 2288 1 chr3B.!!$R3 2287
1 TraesCS3B01G493600 chr3B 425456454 425456980 526 True 717 717 91.149 431 961 1 chr3B.!!$R1 530
2 TraesCS3B01G493600 chr7D 362363444 362364043 599 True 907 907 94.030 1691 2288 1 chr7D.!!$R1 597
3 TraesCS3B01G493600 chr5B 598746910 598747496 586 False 835 835 92.347 432 1019 1 chr5B.!!$F2 587
4 TraesCS3B01G493600 chr4D 3914478 3915082 604 True 835 835 91.749 1689 2288 1 chr4D.!!$R1 599
5 TraesCS3B01G493600 chr1B 456189402 456189965 563 True 817 817 92.920 1693 2252 1 chr1B.!!$R1 559
6 TraesCS3B01G493600 chr5A 562854668 562855267 599 False 811 811 91.196 1690 2285 1 chr5A.!!$F2 595
7 TraesCS3B01G493600 chr7B 742144415 742145014 599 True 809 809 91.181 1695 2288 1 chr7B.!!$R3 593
8 TraesCS3B01G493600 chr7B 720140769 720141366 597 True 802 802 91.000 1695 2288 1 chr7B.!!$R2 593
9 TraesCS3B01G493600 chr4B 560024550 560025153 603 False 798 798 90.759 1690 2285 1 chr4B.!!$F1 595
10 TraesCS3B01G493600 chr4B 472005383 472005901 518 True 704 704 91.154 431 949 1 chr4B.!!$R1 518
11 TraesCS3B01G493600 chr6B 508614718 508615315 597 False 793 793 90.833 1695 2285 1 chr6B.!!$F4 590
12 TraesCS3B01G493600 chr6B 55671187 55671699 512 False 749 749 93.023 1773 2285 1 chr6B.!!$F2 512
13 TraesCS3B01G493600 chr6B 695475982 695476506 524 True 719 719 91.248 433 968 1 chr6B.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 568 0.034574 CCGTTTCACCCCATCCATGA 60.035 55.0 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1598 1604 0.098728 GGGACGAAAATGGACATGCG 59.901 55.0 0.0 0.0 0.0 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.213402 GCGACGGGGAGAGGAGAG 61.213 72.222 0.00 0.00 0.00 3.20
60 61 2.590645 CGACGGGGAGAGGAGAGA 59.409 66.667 0.00 0.00 0.00 3.10
61 62 1.077644 CGACGGGGAGAGGAGAGAA 60.078 63.158 0.00 0.00 0.00 2.87
62 63 1.378124 CGACGGGGAGAGGAGAGAAC 61.378 65.000 0.00 0.00 0.00 3.01
63 64 1.378124 GACGGGGAGAGGAGAGAACG 61.378 65.000 0.00 0.00 0.00 3.95
64 65 1.077644 CGGGGAGAGGAGAGAACGA 60.078 63.158 0.00 0.00 0.00 3.85
65 66 0.680280 CGGGGAGAGGAGAGAACGAA 60.680 60.000 0.00 0.00 0.00 3.85
66 67 1.783071 GGGGAGAGGAGAGAACGAAT 58.217 55.000 0.00 0.00 0.00 3.34
67 68 1.410882 GGGGAGAGGAGAGAACGAATG 59.589 57.143 0.00 0.00 0.00 2.67
68 69 2.104170 GGGAGAGGAGAGAACGAATGT 58.896 52.381 0.00 0.00 0.00 2.71
69 70 2.498078 GGGAGAGGAGAGAACGAATGTT 59.502 50.000 0.00 0.00 42.23 2.71
70 71 3.055747 GGGAGAGGAGAGAACGAATGTTT 60.056 47.826 0.00 0.00 38.78 2.83
71 72 3.929610 GGAGAGGAGAGAACGAATGTTTG 59.070 47.826 0.00 0.00 38.78 2.93
72 73 3.929610 GAGAGGAGAGAACGAATGTTTGG 59.070 47.826 0.00 0.00 38.78 3.28
73 74 3.325135 AGAGGAGAGAACGAATGTTTGGT 59.675 43.478 0.00 0.00 38.78 3.67
74 75 3.403038 AGGAGAGAACGAATGTTTGGTG 58.597 45.455 0.00 0.00 38.78 4.17
75 76 2.484264 GGAGAGAACGAATGTTTGGTGG 59.516 50.000 0.00 0.00 38.78 4.61
76 77 2.484264 GAGAGAACGAATGTTTGGTGGG 59.516 50.000 0.00 0.00 38.78 4.61
77 78 1.539827 GAGAACGAATGTTTGGTGGGG 59.460 52.381 0.00 0.00 38.78 4.96
78 79 0.038618 GAACGAATGTTTGGTGGGGC 60.039 55.000 0.00 0.00 38.78 5.80
79 80 1.801309 AACGAATGTTTGGTGGGGCG 61.801 55.000 0.00 0.00 33.53 6.13
80 81 2.261361 GAATGTTTGGTGGGGCGC 59.739 61.111 0.00 0.00 0.00 6.53
81 82 3.295304 GAATGTTTGGTGGGGCGCC 62.295 63.158 21.18 21.18 34.12 6.53
96 97 3.426568 GCCGAACTGCTGCTGGTC 61.427 66.667 13.84 13.84 0.00 4.02
97 98 2.345244 CCGAACTGCTGCTGGTCT 59.655 61.111 20.06 1.01 0.00 3.85
98 99 2.031516 CCGAACTGCTGCTGGTCTG 61.032 63.158 20.06 11.55 0.00 3.51
99 100 1.005748 CGAACTGCTGCTGGTCTGA 60.006 57.895 20.06 0.00 0.00 3.27
100 101 1.013005 CGAACTGCTGCTGGTCTGAG 61.013 60.000 20.06 3.72 0.00 3.35
101 102 0.034616 GAACTGCTGCTGGTCTGAGT 59.965 55.000 16.19 0.00 0.00 3.41
102 103 0.250209 AACTGCTGCTGGTCTGAGTG 60.250 55.000 11.29 0.00 0.00 3.51
103 104 2.031616 TGCTGCTGGTCTGAGTGC 59.968 61.111 0.00 0.00 0.00 4.40
104 105 3.117171 GCTGCTGGTCTGAGTGCG 61.117 66.667 0.00 0.00 0.00 5.34
105 106 2.341543 CTGCTGGTCTGAGTGCGT 59.658 61.111 0.00 0.00 0.00 5.24
106 107 2.025969 CTGCTGGTCTGAGTGCGTG 61.026 63.158 0.00 0.00 0.00 5.34
107 108 2.029666 GCTGGTCTGAGTGCGTGT 59.970 61.111 0.00 0.00 0.00 4.49
108 109 2.313172 GCTGGTCTGAGTGCGTGTG 61.313 63.158 0.00 0.00 0.00 3.82
109 110 1.363807 CTGGTCTGAGTGCGTGTGA 59.636 57.895 0.00 0.00 0.00 3.58
110 111 0.037882 CTGGTCTGAGTGCGTGTGAT 60.038 55.000 0.00 0.00 0.00 3.06
111 112 0.392706 TGGTCTGAGTGCGTGTGATT 59.607 50.000 0.00 0.00 0.00 2.57
112 113 1.202639 TGGTCTGAGTGCGTGTGATTT 60.203 47.619 0.00 0.00 0.00 2.17
113 114 2.036604 TGGTCTGAGTGCGTGTGATTTA 59.963 45.455 0.00 0.00 0.00 1.40
114 115 3.262420 GGTCTGAGTGCGTGTGATTTAT 58.738 45.455 0.00 0.00 0.00 1.40
115 116 3.307242 GGTCTGAGTGCGTGTGATTTATC 59.693 47.826 0.00 0.00 0.00 1.75
116 117 3.307242 GTCTGAGTGCGTGTGATTTATCC 59.693 47.826 0.00 0.00 0.00 2.59
117 118 2.609459 CTGAGTGCGTGTGATTTATCCC 59.391 50.000 0.00 0.00 0.00 3.85
118 119 1.593006 GAGTGCGTGTGATTTATCCCG 59.407 52.381 0.00 0.00 0.00 5.14
119 120 1.206132 AGTGCGTGTGATTTATCCCGA 59.794 47.619 0.00 0.00 0.00 5.14
120 121 1.593006 GTGCGTGTGATTTATCCCGAG 59.407 52.381 0.00 0.00 0.00 4.63
121 122 1.478916 TGCGTGTGATTTATCCCGAGA 59.521 47.619 0.00 0.00 0.00 4.04
122 123 1.859080 GCGTGTGATTTATCCCGAGAC 59.141 52.381 0.00 0.00 0.00 3.36
123 124 2.117137 CGTGTGATTTATCCCGAGACG 58.883 52.381 0.00 0.00 0.00 4.18
124 125 2.479049 CGTGTGATTTATCCCGAGACGT 60.479 50.000 0.00 0.00 0.00 4.34
125 126 3.518590 GTGTGATTTATCCCGAGACGTT 58.481 45.455 0.00 0.00 0.00 3.99
126 127 3.930848 GTGTGATTTATCCCGAGACGTTT 59.069 43.478 0.00 0.00 0.00 3.60
127 128 4.390909 GTGTGATTTATCCCGAGACGTTTT 59.609 41.667 0.00 0.00 0.00 2.43
128 129 4.628333 TGTGATTTATCCCGAGACGTTTTC 59.372 41.667 0.00 0.00 0.00 2.29
129 130 4.628333 GTGATTTATCCCGAGACGTTTTCA 59.372 41.667 0.00 0.00 0.00 2.69
130 131 4.628333 TGATTTATCCCGAGACGTTTTCAC 59.372 41.667 0.00 0.00 0.00 3.18
131 132 2.660189 TATCCCGAGACGTTTTCACC 57.340 50.000 0.00 0.00 0.00 4.02
132 133 0.389426 ATCCCGAGACGTTTTCACCG 60.389 55.000 0.00 0.00 0.00 4.94
133 134 2.025418 CCCGAGACGTTTTCACCGG 61.025 63.158 0.00 0.00 40.45 5.28
134 135 2.664436 CCGAGACGTTTTCACCGGC 61.664 63.158 0.00 0.00 36.39 6.13
135 136 2.851104 GAGACGTTTTCACCGGCG 59.149 61.111 0.00 0.00 38.70 6.46
136 137 2.663852 AGACGTTTTCACCGGCGG 60.664 61.111 27.06 27.06 38.70 6.13
137 138 3.719144 GACGTTTTCACCGGCGGG 61.719 66.667 31.78 19.08 40.11 6.13
155 156 3.642078 CGGAGCTGGGTAATGGGA 58.358 61.111 0.00 0.00 0.00 4.37
156 157 1.146263 CGGAGCTGGGTAATGGGAC 59.854 63.158 0.00 0.00 0.00 4.46
157 158 1.338136 CGGAGCTGGGTAATGGGACT 61.338 60.000 0.00 0.00 0.00 3.85
158 159 0.181350 GGAGCTGGGTAATGGGACTG 59.819 60.000 0.00 0.00 0.00 3.51
159 160 0.464554 GAGCTGGGTAATGGGACTGC 60.465 60.000 0.00 0.00 0.00 4.40
160 161 1.819632 GCTGGGTAATGGGACTGCG 60.820 63.158 0.00 0.00 0.00 5.18
161 162 1.602237 CTGGGTAATGGGACTGCGT 59.398 57.895 0.00 0.00 0.00 5.24
162 163 0.744414 CTGGGTAATGGGACTGCGTG 60.744 60.000 0.00 0.00 0.00 5.34
163 164 1.451387 GGGTAATGGGACTGCGTGG 60.451 63.158 0.00 0.00 0.00 4.94
164 165 2.112815 GGTAATGGGACTGCGTGGC 61.113 63.158 0.00 0.00 0.00 5.01
165 166 2.112815 GTAATGGGACTGCGTGGCC 61.113 63.158 0.00 0.00 45.48 5.36
201 202 4.421479 CGAGCGCGTCTGGGTTCT 62.421 66.667 8.43 0.00 36.35 3.01
202 203 2.507324 GAGCGCGTCTGGGTTCTC 60.507 66.667 8.43 0.00 35.74 2.87
203 204 3.991536 GAGCGCGTCTGGGTTCTCC 62.992 68.421 8.43 0.00 35.74 3.71
205 206 4.052229 CGCGTCTGGGTTCTCCGT 62.052 66.667 0.00 0.00 38.76 4.69
206 207 2.126031 GCGTCTGGGTTCTCCGTC 60.126 66.667 0.00 0.00 38.76 4.79
207 208 2.572284 CGTCTGGGTTCTCCGTCC 59.428 66.667 0.00 0.00 38.76 4.79
208 209 2.273179 CGTCTGGGTTCTCCGTCCA 61.273 63.158 0.00 0.00 38.76 4.02
209 210 1.592223 GTCTGGGTTCTCCGTCCAG 59.408 63.158 0.00 0.00 46.91 3.86
210 211 2.266055 CTGGGTTCTCCGTCCAGC 59.734 66.667 0.00 0.00 41.12 4.85
211 212 3.649277 CTGGGTTCTCCGTCCAGCG 62.649 68.421 0.00 0.00 41.12 5.18
212 213 3.379445 GGGTTCTCCGTCCAGCGA 61.379 66.667 0.00 0.00 44.77 4.93
213 214 2.182030 GGTTCTCCGTCCAGCGAG 59.818 66.667 0.00 0.00 44.77 5.03
214 215 2.507324 GTTCTCCGTCCAGCGAGC 60.507 66.667 0.00 0.00 44.77 5.03
215 216 4.116328 TTCTCCGTCCAGCGAGCG 62.116 66.667 0.00 0.00 44.77 5.03
239 240 4.271170 CGCACGCACGCAGCTATC 62.271 66.667 6.53 0.00 42.61 2.08
240 241 3.929948 GCACGCACGCAGCTATCC 61.930 66.667 0.00 0.00 42.61 2.59
241 242 3.620428 CACGCACGCAGCTATCCG 61.620 66.667 0.00 0.00 42.61 4.18
242 243 3.822192 ACGCACGCAGCTATCCGA 61.822 61.111 7.48 0.00 42.61 4.55
243 244 2.355126 CGCACGCAGCTATCCGAT 60.355 61.111 7.48 0.00 42.61 4.18
244 245 2.652079 CGCACGCAGCTATCCGATG 61.652 63.158 7.48 4.12 42.61 3.84
245 246 1.300156 GCACGCAGCTATCCGATGA 60.300 57.895 7.48 0.00 41.15 2.92
246 247 1.280886 GCACGCAGCTATCCGATGAG 61.281 60.000 7.48 0.00 41.15 2.90
247 248 0.312102 CACGCAGCTATCCGATGAGA 59.688 55.000 7.48 0.00 32.89 3.27
248 249 1.067985 CACGCAGCTATCCGATGAGAT 60.068 52.381 7.48 0.00 32.89 2.75
249 250 1.201181 ACGCAGCTATCCGATGAGATC 59.799 52.381 7.48 0.00 32.89 2.75
259 260 2.659800 GATGAGATCGGATCCGGGT 58.340 57.895 32.79 21.96 40.25 5.28
260 261 0.244994 GATGAGATCGGATCCGGGTG 59.755 60.000 32.79 6.14 40.25 4.61
261 262 1.188219 ATGAGATCGGATCCGGGTGG 61.188 60.000 32.79 5.73 40.25 4.61
262 263 3.227792 GAGATCGGATCCGGGTGGC 62.228 68.421 32.79 17.29 40.25 5.01
263 264 4.664677 GATCGGATCCGGGTGGCG 62.665 72.222 32.79 6.63 40.25 5.69
268 269 4.090588 GATCCGGGTGGCGTTGGA 62.091 66.667 0.00 0.00 34.14 3.53
269 270 4.404098 ATCCGGGTGGCGTTGGAC 62.404 66.667 0.00 0.00 32.33 4.02
272 273 4.308458 CGGGTGGCGTTGGACTGA 62.308 66.667 0.00 0.00 0.00 3.41
273 274 2.668550 GGGTGGCGTTGGACTGAC 60.669 66.667 0.00 0.00 0.00 3.51
274 275 2.668550 GGTGGCGTTGGACTGACC 60.669 66.667 0.00 0.00 39.54 4.02
275 276 2.668550 GTGGCGTTGGACTGACCC 60.669 66.667 0.00 0.00 38.00 4.46
276 277 4.308458 TGGCGTTGGACTGACCCG 62.308 66.667 0.00 0.00 38.00 5.28
280 281 4.980805 GTTGGACTGACCCGCGCA 62.981 66.667 8.75 0.00 38.00 6.09
281 282 4.980805 TTGGACTGACCCGCGCAC 62.981 66.667 8.75 0.00 38.00 5.34
303 304 4.308458 CCGGTGGTGAAGTGCGGA 62.308 66.667 0.00 0.00 0.00 5.54
304 305 2.280524 CGGTGGTGAAGTGCGGAA 60.281 61.111 0.00 0.00 0.00 4.30
305 306 1.671054 CGGTGGTGAAGTGCGGAAT 60.671 57.895 0.00 0.00 0.00 3.01
306 307 1.875963 GGTGGTGAAGTGCGGAATG 59.124 57.895 0.00 0.00 0.00 2.67
307 308 0.605319 GGTGGTGAAGTGCGGAATGA 60.605 55.000 0.00 0.00 0.00 2.57
308 309 0.798776 GTGGTGAAGTGCGGAATGAG 59.201 55.000 0.00 0.00 0.00 2.90
309 310 0.396435 TGGTGAAGTGCGGAATGAGT 59.604 50.000 0.00 0.00 0.00 3.41
310 311 1.202758 TGGTGAAGTGCGGAATGAGTT 60.203 47.619 0.00 0.00 0.00 3.01
311 312 1.880027 GGTGAAGTGCGGAATGAGTTT 59.120 47.619 0.00 0.00 0.00 2.66
312 313 2.095718 GGTGAAGTGCGGAATGAGTTTC 60.096 50.000 0.00 0.00 0.00 2.78
313 314 1.798223 TGAAGTGCGGAATGAGTTTCG 59.202 47.619 0.00 0.00 39.38 3.46
318 319 2.384203 CGGAATGAGTTTCGCCTCC 58.616 57.895 0.00 0.00 34.98 4.30
319 320 0.391130 CGGAATGAGTTTCGCCTCCA 60.391 55.000 0.00 0.00 34.98 3.86
320 321 1.743772 CGGAATGAGTTTCGCCTCCAT 60.744 52.381 0.00 0.00 34.98 3.41
321 322 2.369394 GGAATGAGTTTCGCCTCCATT 58.631 47.619 0.00 0.00 34.98 3.16
322 323 2.755103 GGAATGAGTTTCGCCTCCATTT 59.245 45.455 0.00 0.00 34.98 2.32
323 324 3.428045 GGAATGAGTTTCGCCTCCATTTG 60.428 47.826 0.00 0.00 34.98 2.32
324 325 2.270352 TGAGTTTCGCCTCCATTTGT 57.730 45.000 0.00 0.00 0.00 2.83
325 326 2.151202 TGAGTTTCGCCTCCATTTGTC 58.849 47.619 0.00 0.00 0.00 3.18
326 327 1.128692 GAGTTTCGCCTCCATTTGTCG 59.871 52.381 0.00 0.00 0.00 4.35
327 328 0.454452 GTTTCGCCTCCATTTGTCGC 60.454 55.000 0.00 0.00 0.00 5.19
328 329 1.906994 TTTCGCCTCCATTTGTCGCG 61.907 55.000 0.00 0.00 44.00 5.87
329 330 4.520846 CGCCTCCATTTGTCGCGC 62.521 66.667 0.00 0.00 36.02 6.86
330 331 3.127533 GCCTCCATTTGTCGCGCT 61.128 61.111 5.56 0.00 0.00 5.92
331 332 3.093278 CCTCCATTTGTCGCGCTC 58.907 61.111 5.56 0.00 0.00 5.03
332 333 2.464459 CCTCCATTTGTCGCGCTCC 61.464 63.158 5.56 0.00 0.00 4.70
333 334 2.802667 CTCCATTTGTCGCGCTCCG 61.803 63.158 5.56 0.00 38.61 4.63
353 354 3.452786 CTCGAGAAGGCCGGCAGA 61.453 66.667 30.85 15.30 0.00 4.26
354 355 2.759973 TCGAGAAGGCCGGCAGAT 60.760 61.111 30.85 13.81 0.00 2.90
355 356 2.187946 CGAGAAGGCCGGCAGATT 59.812 61.111 30.85 19.65 0.00 2.40
356 357 1.450312 CGAGAAGGCCGGCAGATTT 60.450 57.895 30.85 16.41 0.00 2.17
357 358 1.026718 CGAGAAGGCCGGCAGATTTT 61.027 55.000 30.85 14.73 0.00 1.82
358 359 1.177401 GAGAAGGCCGGCAGATTTTT 58.823 50.000 30.85 11.66 0.00 1.94
359 360 2.365582 GAGAAGGCCGGCAGATTTTTA 58.634 47.619 30.85 0.00 0.00 1.52
360 361 2.092323 AGAAGGCCGGCAGATTTTTAC 58.908 47.619 30.85 7.16 0.00 2.01
361 362 0.808755 AAGGCCGGCAGATTTTTACG 59.191 50.000 30.85 0.00 0.00 3.18
362 363 0.035820 AGGCCGGCAGATTTTTACGA 60.036 50.000 30.85 0.00 0.00 3.43
363 364 0.098200 GGCCGGCAGATTTTTACGAC 59.902 55.000 30.85 0.98 0.00 4.34
364 365 0.247537 GCCGGCAGATTTTTACGACG 60.248 55.000 24.80 0.00 0.00 5.12
365 366 0.247537 CCGGCAGATTTTTACGACGC 60.248 55.000 0.00 0.00 0.00 5.19
366 367 0.440758 CGGCAGATTTTTACGACGCA 59.559 50.000 0.00 0.00 0.00 5.24
367 368 1.785518 CGGCAGATTTTTACGACGCAC 60.786 52.381 0.00 0.00 0.00 5.34
368 369 1.465187 GGCAGATTTTTACGACGCACC 60.465 52.381 0.00 0.00 0.00 5.01
369 370 1.785518 GCAGATTTTTACGACGCACCG 60.786 52.381 0.00 0.00 0.00 4.94
370 371 1.722464 CAGATTTTTACGACGCACCGA 59.278 47.619 0.00 0.00 0.00 4.69
371 372 1.723003 AGATTTTTACGACGCACCGAC 59.277 47.619 0.00 0.00 0.00 4.79
372 373 0.792031 ATTTTTACGACGCACCGACC 59.208 50.000 0.00 0.00 0.00 4.79
373 374 1.547292 TTTTTACGACGCACCGACCG 61.547 55.000 0.00 0.00 34.39 4.79
374 375 2.399511 TTTTACGACGCACCGACCGA 62.400 55.000 0.00 0.00 33.19 4.69
375 376 2.399511 TTTACGACGCACCGACCGAA 62.400 55.000 0.00 0.99 33.19 4.30
376 377 3.593551 TACGACGCACCGACCGAAC 62.594 63.158 0.00 0.00 33.19 3.95
378 379 4.688419 GACGCACCGACCGAACGA 62.688 66.667 0.00 0.00 35.09 3.85
379 380 4.988486 ACGCACCGACCGAACGAC 62.988 66.667 0.00 0.00 35.09 4.34
381 382 4.353437 GCACCGACCGAACGACCT 62.353 66.667 0.00 0.00 35.09 3.85
382 383 2.337532 CACCGACCGAACGACCTT 59.662 61.111 0.00 0.00 35.09 3.50
383 384 1.300388 CACCGACCGAACGACCTTT 60.300 57.895 0.00 0.00 35.09 3.11
384 385 1.006922 ACCGACCGAACGACCTTTC 60.007 57.895 0.00 0.00 35.09 2.62
385 386 1.735559 CCGACCGAACGACCTTTCC 60.736 63.158 0.00 0.00 35.09 3.13
386 387 1.288127 CGACCGAACGACCTTTCCT 59.712 57.895 0.00 0.00 35.09 3.36
387 388 0.523072 CGACCGAACGACCTTTCCTA 59.477 55.000 0.00 0.00 35.09 2.94
388 389 1.068333 CGACCGAACGACCTTTCCTAA 60.068 52.381 0.00 0.00 35.09 2.69
389 390 2.607771 CGACCGAACGACCTTTCCTAAA 60.608 50.000 0.00 0.00 35.09 1.85
390 391 3.392882 GACCGAACGACCTTTCCTAAAA 58.607 45.455 0.00 0.00 0.00 1.52
391 392 3.133691 ACCGAACGACCTTTCCTAAAAC 58.866 45.455 0.00 0.00 0.00 2.43
392 393 3.181462 ACCGAACGACCTTTCCTAAAACT 60.181 43.478 0.00 0.00 0.00 2.66
393 394 3.811497 CCGAACGACCTTTCCTAAAACTT 59.189 43.478 0.00 0.00 0.00 2.66
394 395 4.274214 CCGAACGACCTTTCCTAAAACTTT 59.726 41.667 0.00 0.00 0.00 2.66
395 396 5.438117 CGAACGACCTTTCCTAAAACTTTC 58.562 41.667 0.00 0.00 0.00 2.62
396 397 5.006941 CGAACGACCTTTCCTAAAACTTTCA 59.993 40.000 0.00 0.00 0.00 2.69
397 398 6.373186 AACGACCTTTCCTAAAACTTTCAG 57.627 37.500 0.00 0.00 0.00 3.02
398 399 5.677567 ACGACCTTTCCTAAAACTTTCAGA 58.322 37.500 0.00 0.00 0.00 3.27
399 400 5.526479 ACGACCTTTCCTAAAACTTTCAGAC 59.474 40.000 0.00 0.00 0.00 3.51
400 401 5.526111 CGACCTTTCCTAAAACTTTCAGACA 59.474 40.000 0.00 0.00 0.00 3.41
401 402 6.292919 CGACCTTTCCTAAAACTTTCAGACAG 60.293 42.308 0.00 0.00 0.00 3.51
402 403 6.659824 ACCTTTCCTAAAACTTTCAGACAGA 58.340 36.000 0.00 0.00 0.00 3.41
403 404 7.290813 ACCTTTCCTAAAACTTTCAGACAGAT 58.709 34.615 0.00 0.00 0.00 2.90
404 405 7.229506 ACCTTTCCTAAAACTTTCAGACAGATG 59.770 37.037 0.00 0.00 0.00 2.90
405 406 7.308830 CCTTTCCTAAAACTTTCAGACAGATGG 60.309 40.741 0.00 0.00 0.00 3.51
406 407 5.003804 TCCTAAAACTTTCAGACAGATGGC 58.996 41.667 0.00 0.00 0.00 4.40
407 408 5.006386 CCTAAAACTTTCAGACAGATGGCT 58.994 41.667 0.00 0.00 0.00 4.75
408 409 6.013725 TCCTAAAACTTTCAGACAGATGGCTA 60.014 38.462 0.00 0.00 0.00 3.93
409 410 5.948992 AAAACTTTCAGACAGATGGCTAC 57.051 39.130 0.00 0.00 0.00 3.58
410 411 4.623932 AACTTTCAGACAGATGGCTACA 57.376 40.909 0.00 0.00 0.00 2.74
411 412 4.833478 ACTTTCAGACAGATGGCTACAT 57.167 40.909 0.00 0.00 40.85 2.29
423 424 4.686191 ATGGCTACATCTCTCTCCAAAG 57.314 45.455 0.00 0.00 29.20 2.77
424 425 3.445008 TGGCTACATCTCTCTCCAAAGT 58.555 45.455 0.00 0.00 0.00 2.66
425 426 3.449018 TGGCTACATCTCTCTCCAAAGTC 59.551 47.826 0.00 0.00 0.00 3.01
426 427 3.704061 GGCTACATCTCTCTCCAAAGTCT 59.296 47.826 0.00 0.00 0.00 3.24
427 428 4.161377 GGCTACATCTCTCTCCAAAGTCTT 59.839 45.833 0.00 0.00 0.00 3.01
428 429 5.337975 GGCTACATCTCTCTCCAAAGTCTTT 60.338 44.000 0.00 0.00 0.00 2.52
429 430 6.169800 GCTACATCTCTCTCCAAAGTCTTTT 58.830 40.000 0.00 0.00 0.00 2.27
470 471 1.381076 GACCCCATTTTGTCCGGGA 59.619 57.895 0.00 0.00 43.21 5.14
564 565 1.377229 GTCCGTTTCACCCCATCCA 59.623 57.895 0.00 0.00 0.00 3.41
567 568 0.034574 CCGTTTCACCCCATCCATGA 60.035 55.000 0.00 0.00 0.00 3.07
986 992 2.419739 GGGCAGTCGACTCCTCCTC 61.420 68.421 16.96 7.71 0.00 3.71
987 993 2.419739 GGCAGTCGACTCCTCCTCC 61.420 68.421 16.96 6.44 0.00 4.30
1041 1047 3.197790 CCGAAGCAGGCATCCACG 61.198 66.667 0.00 0.00 0.00 4.94
1042 1048 2.125552 CGAAGCAGGCATCCACGA 60.126 61.111 0.00 0.00 0.00 4.35
1043 1049 2.456119 CGAAGCAGGCATCCACGAC 61.456 63.158 0.00 0.00 0.00 4.34
1044 1050 2.045926 AAGCAGGCATCCACGACC 60.046 61.111 0.00 0.00 0.00 4.79
1045 1051 3.958147 AAGCAGGCATCCACGACCG 62.958 63.158 0.00 0.00 0.00 4.79
1086 1092 3.490759 CACGTGCCGGTCTGCATC 61.491 66.667 0.82 0.00 44.30 3.91
1094 1100 3.838271 GGTCTGCATCGGCGAGGA 61.838 66.667 26.96 12.65 45.35 3.71
1095 1101 2.279120 GTCTGCATCGGCGAGGAG 60.279 66.667 26.96 21.03 45.35 3.69
1096 1102 3.531207 TCTGCATCGGCGAGGAGG 61.531 66.667 26.96 15.97 45.35 4.30
1097 1103 4.598894 CTGCATCGGCGAGGAGGG 62.599 72.222 26.96 9.92 45.35 4.30
1122 1128 2.867472 GTGGAACGGTTCGCCATG 59.133 61.111 14.23 0.00 37.00 3.66
1123 1129 3.053291 TGGAACGGTTCGCCATGC 61.053 61.111 14.23 0.74 37.00 4.06
1179 1185 4.463879 CTCCTGTGCGCCTCCCAG 62.464 72.222 4.18 5.70 0.00 4.45
1182 1188 4.463879 CTGTGCGCCTCCCAGGAG 62.464 72.222 4.18 6.73 37.67 3.69
1184 1190 3.075005 GTGCGCCTCCCAGGAGTA 61.075 66.667 12.65 0.00 37.67 2.59
1185 1191 3.075005 TGCGCCTCCCAGGAGTAC 61.075 66.667 12.65 3.73 37.67 2.73
1186 1192 4.208686 GCGCCTCCCAGGAGTACG 62.209 72.222 17.50 17.50 37.67 3.67
1187 1193 3.528370 CGCCTCCCAGGAGTACGG 61.528 72.222 12.65 0.00 37.67 4.02
1188 1194 3.155167 GCCTCCCAGGAGTACGGG 61.155 72.222 12.65 0.00 44.60 5.28
1189 1195 2.363361 CCTCCCAGGAGTACGGGT 59.637 66.667 12.65 0.00 43.57 5.28
1190 1196 1.616921 CCTCCCAGGAGTACGGGTA 59.383 63.158 12.65 0.00 43.57 3.69
1191 1197 0.754587 CCTCCCAGGAGTACGGGTAC 60.755 65.000 12.65 0.70 43.57 3.34
1192 1198 1.077501 TCCCAGGAGTACGGGTACG 60.078 63.158 3.77 0.00 43.57 3.67
1193 1199 2.123428 CCCAGGAGTACGGGTACGG 61.123 68.421 3.52 0.00 46.48 4.02
1194 1200 2.779033 CCAGGAGTACGGGTACGGC 61.779 68.421 3.52 0.88 46.48 5.68
1195 1201 2.440980 AGGAGTACGGGTACGGCC 60.441 66.667 12.86 12.86 46.48 6.13
1196 1202 2.755469 GGAGTACGGGTACGGCCA 60.755 66.667 2.24 0.00 46.48 5.36
1197 1203 2.491621 GAGTACGGGTACGGCCAC 59.508 66.667 2.24 0.00 46.48 5.01
1198 1204 3.068729 GAGTACGGGTACGGCCACC 62.069 68.421 2.24 2.99 46.48 4.61
1248 1254 4.516195 GACTTCCGCGGCCTCCTC 62.516 72.222 23.51 6.32 0.00 3.71
1259 1265 3.213402 CCTCCTCGTCCGCCTCTC 61.213 72.222 0.00 0.00 0.00 3.20
1260 1266 3.213402 CTCCTCGTCCGCCTCTCC 61.213 72.222 0.00 0.00 0.00 3.71
1263 1269 3.878519 CTCGTCCGCCTCTCCGAC 61.879 72.222 0.00 0.00 0.00 4.79
1264 1270 4.405671 TCGTCCGCCTCTCCGACT 62.406 66.667 0.00 0.00 0.00 4.18
1265 1271 3.441290 CGTCCGCCTCTCCGACTT 61.441 66.667 0.00 0.00 0.00 3.01
1266 1272 2.490685 GTCCGCCTCTCCGACTTC 59.509 66.667 0.00 0.00 0.00 3.01
1267 1273 2.754658 TCCGCCTCTCCGACTTCC 60.755 66.667 0.00 0.00 0.00 3.46
1268 1274 3.839432 CCGCCTCTCCGACTTCCC 61.839 72.222 0.00 0.00 0.00 3.97
1269 1275 3.839432 CGCCTCTCCGACTTCCCC 61.839 72.222 0.00 0.00 0.00 4.81
1270 1276 2.364448 GCCTCTCCGACTTCCCCT 60.364 66.667 0.00 0.00 0.00 4.79
1271 1277 1.076192 GCCTCTCCGACTTCCCCTA 60.076 63.158 0.00 0.00 0.00 3.53
1272 1278 1.393487 GCCTCTCCGACTTCCCCTAC 61.393 65.000 0.00 0.00 0.00 3.18
1273 1279 1.102222 CCTCTCCGACTTCCCCTACG 61.102 65.000 0.00 0.00 0.00 3.51
1274 1280 1.726533 CTCTCCGACTTCCCCTACGC 61.727 65.000 0.00 0.00 0.00 4.42
1275 1281 2.757099 TCCGACTTCCCCTACGCC 60.757 66.667 0.00 0.00 0.00 5.68
1276 1282 4.203076 CCGACTTCCCCTACGCCG 62.203 72.222 0.00 0.00 0.00 6.46
1277 1283 3.136123 CGACTTCCCCTACGCCGA 61.136 66.667 0.00 0.00 0.00 5.54
1278 1284 2.493501 GACTTCCCCTACGCCGAC 59.506 66.667 0.00 0.00 0.00 4.79
1280 1286 3.136123 CTTCCCCTACGCCGACGA 61.136 66.667 0.00 0.00 43.93 4.20
1281 1287 3.122250 CTTCCCCTACGCCGACGAG 62.122 68.421 0.00 0.00 43.93 4.18
1282 1288 3.925630 TTCCCCTACGCCGACGAGT 62.926 63.158 0.00 0.00 43.93 4.18
1283 1289 4.189188 CCCCTACGCCGACGAGTG 62.189 72.222 0.00 0.00 43.93 3.51
1284 1290 4.849329 CCCTACGCCGACGAGTGC 62.849 72.222 0.00 0.00 43.93 4.40
1285 1291 3.812019 CCTACGCCGACGAGTGCT 61.812 66.667 0.00 0.00 43.93 4.40
1286 1292 2.466982 CCTACGCCGACGAGTGCTA 61.467 63.158 0.00 0.00 43.93 3.49
1287 1293 1.011019 CTACGCCGACGAGTGCTAG 60.011 63.158 0.00 0.00 43.93 3.42
1288 1294 2.376231 CTACGCCGACGAGTGCTAGG 62.376 65.000 0.00 0.00 43.93 3.02
1289 1295 4.554363 CGCCGACGAGTGCTAGGG 62.554 72.222 0.00 0.00 43.93 3.53
1290 1296 4.208686 GCCGACGAGTGCTAGGGG 62.209 72.222 0.00 0.00 0.00 4.79
1291 1297 4.208686 CCGACGAGTGCTAGGGGC 62.209 72.222 0.00 0.00 42.22 5.80
1292 1298 4.208686 CGACGAGTGCTAGGGGCC 62.209 72.222 0.00 0.00 40.92 5.80
1293 1299 4.208686 GACGAGTGCTAGGGGCCG 62.209 72.222 0.00 0.00 40.92 6.13
1295 1301 4.208686 CGAGTGCTAGGGGCCGTC 62.209 72.222 0.00 0.00 40.92 4.79
1296 1302 3.851128 GAGTGCTAGGGGCCGTCC 61.851 72.222 0.00 0.00 40.92 4.79
1297 1303 4.400251 AGTGCTAGGGGCCGTCCT 62.400 66.667 0.00 5.80 40.92 3.85
1298 1304 3.851128 GTGCTAGGGGCCGTCCTC 61.851 72.222 0.00 0.00 40.92 3.71
1308 1314 3.382832 CCGTCCTCCGCACCTTCT 61.383 66.667 0.00 0.00 34.38 2.85
1309 1315 2.182030 CGTCCTCCGCACCTTCTC 59.818 66.667 0.00 0.00 0.00 2.87
1310 1316 2.182030 GTCCTCCGCACCTTCTCG 59.818 66.667 0.00 0.00 0.00 4.04
1311 1317 3.068691 TCCTCCGCACCTTCTCGG 61.069 66.667 0.00 0.00 46.52 4.63
1312 1318 4.821589 CCTCCGCACCTTCTCGGC 62.822 72.222 0.00 0.00 44.91 5.54
1313 1319 4.821589 CTCCGCACCTTCTCGGCC 62.822 72.222 0.00 0.00 44.91 6.13
1328 1334 4.400961 GCCTGCCGCTGGAGAACT 62.401 66.667 19.78 0.00 0.00 3.01
1329 1335 2.125350 CCTGCCGCTGGAGAACTC 60.125 66.667 10.72 0.00 0.00 3.01
1330 1336 2.654079 CCTGCCGCTGGAGAACTCT 61.654 63.158 10.72 0.00 0.00 3.24
1331 1337 1.447489 CTGCCGCTGGAGAACTCTG 60.447 63.158 0.00 0.00 0.00 3.35
1332 1338 2.817396 GCCGCTGGAGAACTCTGC 60.817 66.667 1.86 6.15 34.66 4.26
1333 1339 2.125350 CCGCTGGAGAACTCTGCC 60.125 66.667 1.86 0.00 32.95 4.85
1334 1340 2.125350 CGCTGGAGAACTCTGCCC 60.125 66.667 1.86 0.00 32.95 5.36
1335 1341 2.270527 GCTGGAGAACTCTGCCCC 59.729 66.667 1.86 0.00 32.95 5.80
1336 1342 2.993853 CTGGAGAACTCTGCCCCC 59.006 66.667 1.86 0.00 32.95 5.40
1337 1343 1.920325 CTGGAGAACTCTGCCCCCA 60.920 63.158 1.86 0.00 32.95 4.96
1338 1344 2.190488 CTGGAGAACTCTGCCCCCAC 62.190 65.000 1.86 0.00 32.95 4.61
1339 1345 2.671682 GAGAACTCTGCCCCCACC 59.328 66.667 0.00 0.00 0.00 4.61
1340 1346 2.936032 AGAACTCTGCCCCCACCC 60.936 66.667 0.00 0.00 0.00 4.61
1341 1347 4.410400 GAACTCTGCCCCCACCCG 62.410 72.222 0.00 0.00 0.00 5.28
1342 1348 4.974438 AACTCTGCCCCCACCCGA 62.974 66.667 0.00 0.00 0.00 5.14
1421 1427 4.500116 GGACGCGTCTGGGAGCTC 62.500 72.222 35.50 15.03 0.00 4.09
1422 1428 4.500116 GACGCGTCTGGGAGCTCC 62.500 72.222 31.12 25.59 0.00 4.70
1436 1442 4.170062 CTCCAGGCGTGCGCAATG 62.170 66.667 14.00 9.50 44.11 2.82
1501 1507 4.641645 CGAGCAGGTGGGGTGCAA 62.642 66.667 0.00 0.00 43.82 4.08
1502 1508 2.674380 GAGCAGGTGGGGTGCAAG 60.674 66.667 0.00 0.00 43.82 4.01
1503 1509 4.290622 AGCAGGTGGGGTGCAAGG 62.291 66.667 0.00 0.00 43.82 3.61
1535 1541 4.796231 CGACGAGCGGGTGGGAAG 62.796 72.222 0.00 0.00 36.03 3.46
1536 1542 4.452733 GACGAGCGGGTGGGAAGG 62.453 72.222 0.00 0.00 0.00 3.46
1538 1544 4.760047 CGAGCGGGTGGGAAGGTG 62.760 72.222 0.00 0.00 0.00 4.00
1544 1550 4.717313 GGTGGGAAGGTGCGGGAC 62.717 72.222 0.00 0.00 0.00 4.46
1558 1564 3.045518 GGGACGGACATTTTTGGGT 57.954 52.632 0.00 0.00 0.00 4.51
1559 1565 0.885879 GGGACGGACATTTTTGGGTC 59.114 55.000 0.00 0.00 0.00 4.46
1560 1566 0.519961 GGACGGACATTTTTGGGTCG 59.480 55.000 0.00 0.00 34.87 4.79
1561 1567 0.109919 GACGGACATTTTTGGGTCGC 60.110 55.000 0.00 0.00 34.87 5.19
1562 1568 0.536460 ACGGACATTTTTGGGTCGCT 60.536 50.000 0.00 0.00 34.87 4.93
1563 1569 0.168128 CGGACATTTTTGGGTCGCTC 59.832 55.000 0.00 0.00 34.87 5.03
1564 1570 1.534729 GGACATTTTTGGGTCGCTCT 58.465 50.000 0.00 0.00 34.87 4.09
1565 1571 1.200020 GGACATTTTTGGGTCGCTCTG 59.800 52.381 0.00 0.00 34.87 3.35
1566 1572 1.880027 GACATTTTTGGGTCGCTCTGT 59.120 47.619 0.00 0.00 0.00 3.41
1567 1573 1.880027 ACATTTTTGGGTCGCTCTGTC 59.120 47.619 0.00 0.00 0.00 3.51
1568 1574 1.135972 CATTTTTGGGTCGCTCTGTCG 60.136 52.381 0.00 0.00 0.00 4.35
1569 1575 1.503818 TTTTTGGGTCGCTCTGTCGC 61.504 55.000 0.00 0.00 0.00 5.19
1591 1597 2.946762 GGCACCTCGAACACAAGC 59.053 61.111 0.00 0.00 0.00 4.01
1592 1598 1.598130 GGCACCTCGAACACAAGCT 60.598 57.895 0.00 0.00 0.00 3.74
1593 1599 1.571460 GCACCTCGAACACAAGCTG 59.429 57.895 0.00 0.00 0.00 4.24
1594 1600 1.845809 GCACCTCGAACACAAGCTGG 61.846 60.000 0.00 0.00 0.00 4.85
1595 1601 0.249868 CACCTCGAACACAAGCTGGA 60.250 55.000 0.00 0.00 0.00 3.86
1596 1602 0.249911 ACCTCGAACACAAGCTGGAC 60.250 55.000 0.00 0.00 0.00 4.02
1597 1603 0.249868 CCTCGAACACAAGCTGGACA 60.250 55.000 0.00 0.00 0.00 4.02
1598 1604 0.861837 CTCGAACACAAGCTGGACAC 59.138 55.000 0.00 0.00 0.00 3.67
1599 1605 0.874175 TCGAACACAAGCTGGACACG 60.874 55.000 0.00 0.00 0.00 4.49
1600 1606 1.279840 GAACACAAGCTGGACACGC 59.720 57.895 0.00 0.00 0.00 5.34
1601 1607 1.436195 GAACACAAGCTGGACACGCA 61.436 55.000 0.00 0.00 0.00 5.24
1602 1608 0.819259 AACACAAGCTGGACACGCAT 60.819 50.000 0.00 0.00 0.00 4.73
1603 1609 1.208358 CACAAGCTGGACACGCATG 59.792 57.895 0.00 0.00 32.80 4.06
1604 1610 1.227943 ACAAGCTGGACACGCATGT 60.228 52.632 0.00 0.00 43.71 3.21
1614 1620 1.234821 ACACGCATGTCCATTTTCGT 58.765 45.000 0.00 0.00 31.55 3.85
1615 1621 1.196808 ACACGCATGTCCATTTTCGTC 59.803 47.619 0.00 0.00 31.55 4.20
1616 1622 0.802494 ACGCATGTCCATTTTCGTCC 59.198 50.000 0.00 0.00 0.00 4.79
1617 1623 0.098728 CGCATGTCCATTTTCGTCCC 59.901 55.000 0.00 0.00 0.00 4.46
1618 1624 0.455815 GCATGTCCATTTTCGTCCCC 59.544 55.000 0.00 0.00 0.00 4.81
1619 1625 1.832883 CATGTCCATTTTCGTCCCCA 58.167 50.000 0.00 0.00 0.00 4.96
1620 1626 2.378038 CATGTCCATTTTCGTCCCCAT 58.622 47.619 0.00 0.00 0.00 4.00
1621 1627 2.595750 TGTCCATTTTCGTCCCCATT 57.404 45.000 0.00 0.00 0.00 3.16
1622 1628 2.166829 TGTCCATTTTCGTCCCCATTG 58.833 47.619 0.00 0.00 0.00 2.82
1623 1629 1.135112 GTCCATTTTCGTCCCCATTGC 60.135 52.381 0.00 0.00 0.00 3.56
1624 1630 0.175531 CCATTTTCGTCCCCATTGCC 59.824 55.000 0.00 0.00 0.00 4.52
1625 1631 0.894141 CATTTTCGTCCCCATTGCCA 59.106 50.000 0.00 0.00 0.00 4.92
1626 1632 0.894835 ATTTTCGTCCCCATTGCCAC 59.105 50.000 0.00 0.00 0.00 5.01
1627 1633 1.182385 TTTTCGTCCCCATTGCCACC 61.182 55.000 0.00 0.00 0.00 4.61
1628 1634 3.577334 TTCGTCCCCATTGCCACCC 62.577 63.158 0.00 0.00 0.00 4.61
1630 1636 3.991318 GTCCCCATTGCCACCCCA 61.991 66.667 0.00 0.00 0.00 4.96
1631 1637 3.196385 TCCCCATTGCCACCCCAA 61.196 61.111 0.00 0.00 0.00 4.12
1632 1638 2.203907 CCCCATTGCCACCCCAAA 60.204 61.111 0.00 0.00 0.00 3.28
1633 1639 2.592032 CCCCATTGCCACCCCAAAC 61.592 63.158 0.00 0.00 0.00 2.93
1634 1640 2.656055 CCATTGCCACCCCAAACG 59.344 61.111 0.00 0.00 0.00 3.60
1635 1641 2.656055 CATTGCCACCCCAAACGG 59.344 61.111 0.00 0.00 0.00 4.44
1636 1642 1.905843 CATTGCCACCCCAAACGGA 60.906 57.895 0.00 0.00 0.00 4.69
1637 1643 1.078347 ATTGCCACCCCAAACGGAT 59.922 52.632 0.00 0.00 0.00 4.18
1638 1644 1.257055 ATTGCCACCCCAAACGGATG 61.257 55.000 0.00 0.00 0.00 3.51
1639 1645 2.034999 GCCACCCCAAACGGATGA 59.965 61.111 0.00 0.00 0.00 2.92
1640 1646 1.605165 GCCACCCCAAACGGATGAA 60.605 57.895 0.00 0.00 0.00 2.57
1641 1647 1.182385 GCCACCCCAAACGGATGAAA 61.182 55.000 0.00 0.00 0.00 2.69
1642 1648 1.555967 CCACCCCAAACGGATGAAAT 58.444 50.000 0.00 0.00 0.00 2.17
1643 1649 1.476488 CCACCCCAAACGGATGAAATC 59.524 52.381 0.00 0.00 44.55 2.17
1661 1667 4.331356 CGGACAAAACGGACGTCT 57.669 55.556 16.46 0.00 0.00 4.18
1662 1668 1.850640 CGGACAAAACGGACGTCTG 59.149 57.895 22.81 22.81 0.00 3.51
1663 1669 0.872881 CGGACAAAACGGACGTCTGT 60.873 55.000 24.31 24.31 36.96 3.41
1664 1670 1.292992 GGACAAAACGGACGTCTGTT 58.707 50.000 32.15 32.15 46.62 3.16
1668 1674 4.449391 AACGGACGTCTGTTTGGG 57.551 55.556 32.15 8.92 42.39 4.12
1669 1675 1.227734 AACGGACGTCTGTTTGGGG 60.228 57.895 32.15 7.67 42.39 4.96
1670 1676 1.974973 AACGGACGTCTGTTTGGGGT 61.975 55.000 32.15 13.55 42.39 4.95
1671 1677 1.666872 CGGACGTCTGTTTGGGGTC 60.667 63.158 16.54 0.00 0.00 4.46
1672 1678 1.666872 GGACGTCTGTTTGGGGTCG 60.667 63.158 16.46 0.00 0.00 4.79
1673 1679 1.068585 GACGTCTGTTTGGGGTCGT 59.931 57.895 8.70 0.00 0.00 4.34
1674 1680 1.219522 GACGTCTGTTTGGGGTCGTG 61.220 60.000 8.70 0.00 0.00 4.35
1675 1681 2.604174 CGTCTGTTTGGGGTCGTGC 61.604 63.158 0.00 0.00 0.00 5.34
1676 1682 2.280524 TCTGTTTGGGGTCGTGCG 60.281 61.111 0.00 0.00 0.00 5.34
1677 1683 3.353836 CTGTTTGGGGTCGTGCGG 61.354 66.667 0.00 0.00 0.00 5.69
1678 1684 4.178169 TGTTTGGGGTCGTGCGGT 62.178 61.111 0.00 0.00 0.00 5.68
1679 1685 3.656045 GTTTGGGGTCGTGCGGTG 61.656 66.667 0.00 0.00 0.00 4.94
1680 1686 4.939368 TTTGGGGTCGTGCGGTGG 62.939 66.667 0.00 0.00 0.00 4.61
1684 1690 4.309950 GGGTCGTGCGGTGGAGTT 62.310 66.667 0.00 0.00 0.00 3.01
1685 1691 3.041940 GGTCGTGCGGTGGAGTTG 61.042 66.667 0.00 0.00 0.00 3.16
1686 1692 3.041940 GTCGTGCGGTGGAGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
1687 1693 4.980805 TCGTGCGGTGGAGTTGGC 62.981 66.667 0.00 0.00 0.00 4.52
1689 1695 4.643387 GTGCGGTGGAGTTGGCCT 62.643 66.667 3.32 0.00 0.00 5.19
1690 1696 2.925706 TGCGGTGGAGTTGGCCTA 60.926 61.111 3.32 0.00 0.00 3.93
1691 1697 2.349755 GCGGTGGAGTTGGCCTAA 59.650 61.111 3.32 0.00 0.00 2.69
1692 1698 1.302993 GCGGTGGAGTTGGCCTAAA 60.303 57.895 3.32 0.00 0.00 1.85
1693 1699 1.305930 GCGGTGGAGTTGGCCTAAAG 61.306 60.000 3.32 0.00 0.00 1.85
1694 1700 0.676782 CGGTGGAGTTGGCCTAAAGG 60.677 60.000 3.32 0.00 38.53 3.11
1695 1701 0.323451 GGTGGAGTTGGCCTAAAGGG 60.323 60.000 3.32 0.00 35.18 3.95
1709 1715 2.042843 AGGGCACTACTAGGCGCT 60.043 61.111 7.64 3.01 46.79 5.92
1739 1745 1.740296 CGAATTTCGGCCGGTCAGT 60.740 57.895 27.83 8.72 36.00 3.41
1741 1747 0.953960 GAATTTCGGCCGGTCAGTGT 60.954 55.000 27.83 4.13 0.00 3.55
1748 1754 4.248842 CCGGTCAGTGTGCACCCA 62.249 66.667 15.69 0.00 0.00 4.51
1760 1766 1.356624 GCACCCATACGATTGCAGC 59.643 57.895 0.00 0.00 34.97 5.25
1782 1788 0.178767 CATCTGCCGTTGGATCTGGA 59.821 55.000 0.00 0.00 0.00 3.86
1904 1916 0.456142 CTGATTCGAAGCACCGTCGA 60.456 55.000 12.91 0.00 45.30 4.20
1963 1976 2.358615 GACACCATCGCTGCACCA 60.359 61.111 0.00 0.00 0.00 4.17
1984 1997 1.423845 CCGTCGCCATGTAGCAAAC 59.576 57.895 0.00 0.00 0.00 2.93
2002 2015 2.259266 ACCAATTAACCGGTTGTCGT 57.741 45.000 30.08 14.68 37.11 4.34
2033 2048 1.337074 ACCGATGCAGCAAAATTGTGG 60.337 47.619 1.53 0.00 0.00 4.17
2072 2087 2.747855 CCTCCGGTTGCAGCCTTC 60.748 66.667 18.19 0.00 0.00 3.46
2128 2143 4.317488 TGGGGTAGTAGCTAACAAAAACG 58.683 43.478 0.00 0.00 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.213402 CTCTCCTCTCCCCGTCGC 61.213 72.222 0.00 0.00 0.00 5.19
43 44 1.077644 TTCTCTCCTCTCCCCGTCG 60.078 63.158 0.00 0.00 0.00 5.12
44 45 1.378124 CGTTCTCTCCTCTCCCCGTC 61.378 65.000 0.00 0.00 0.00 4.79
45 46 1.378778 CGTTCTCTCCTCTCCCCGT 60.379 63.158 0.00 0.00 0.00 5.28
46 47 0.680280 TTCGTTCTCTCCTCTCCCCG 60.680 60.000 0.00 0.00 0.00 5.73
47 48 1.410882 CATTCGTTCTCTCCTCTCCCC 59.589 57.143 0.00 0.00 0.00 4.81
48 49 2.104170 ACATTCGTTCTCTCCTCTCCC 58.896 52.381 0.00 0.00 0.00 4.30
49 50 3.878160 AACATTCGTTCTCTCCTCTCC 57.122 47.619 0.00 0.00 0.00 3.71
50 51 3.929610 CCAAACATTCGTTCTCTCCTCTC 59.070 47.826 0.00 0.00 32.91 3.20
51 52 3.325135 ACCAAACATTCGTTCTCTCCTCT 59.675 43.478 0.00 0.00 32.91 3.69
52 53 3.433615 CACCAAACATTCGTTCTCTCCTC 59.566 47.826 0.00 0.00 32.91 3.71
53 54 3.403038 CACCAAACATTCGTTCTCTCCT 58.597 45.455 0.00 0.00 32.91 3.69
54 55 2.484264 CCACCAAACATTCGTTCTCTCC 59.516 50.000 0.00 0.00 32.91 3.71
55 56 2.484264 CCCACCAAACATTCGTTCTCTC 59.516 50.000 0.00 0.00 32.91 3.20
56 57 2.504367 CCCACCAAACATTCGTTCTCT 58.496 47.619 0.00 0.00 32.91 3.10
57 58 1.539827 CCCCACCAAACATTCGTTCTC 59.460 52.381 0.00 0.00 32.91 2.87
58 59 1.616159 CCCCACCAAACATTCGTTCT 58.384 50.000 0.00 0.00 32.91 3.01
59 60 0.038618 GCCCCACCAAACATTCGTTC 60.039 55.000 0.00 0.00 32.91 3.95
60 61 1.801309 CGCCCCACCAAACATTCGTT 61.801 55.000 0.00 0.00 36.73 3.85
61 62 2.265182 CGCCCCACCAAACATTCGT 61.265 57.895 0.00 0.00 0.00 3.85
62 63 2.566010 CGCCCCACCAAACATTCG 59.434 61.111 0.00 0.00 0.00 3.34
63 64 2.261361 GCGCCCCACCAAACATTC 59.739 61.111 0.00 0.00 0.00 2.67
64 65 3.310307 GGCGCCCCACCAAACATT 61.310 61.111 18.11 0.00 0.00 2.71
79 80 3.426568 GACCAGCAGCAGTTCGGC 61.427 66.667 0.00 0.00 36.06 5.54
80 81 2.031516 CAGACCAGCAGCAGTTCGG 61.032 63.158 0.00 0.00 0.00 4.30
81 82 1.005748 TCAGACCAGCAGCAGTTCG 60.006 57.895 0.00 0.00 0.00 3.95
82 83 0.034616 ACTCAGACCAGCAGCAGTTC 59.965 55.000 0.00 0.00 0.00 3.01
83 84 0.250209 CACTCAGACCAGCAGCAGTT 60.250 55.000 0.00 0.00 0.00 3.16
84 85 1.370437 CACTCAGACCAGCAGCAGT 59.630 57.895 0.00 0.00 0.00 4.40
85 86 2.033755 GCACTCAGACCAGCAGCAG 61.034 63.158 0.00 0.00 0.00 4.24
86 87 2.031616 GCACTCAGACCAGCAGCA 59.968 61.111 0.00 0.00 0.00 4.41
87 88 3.117171 CGCACTCAGACCAGCAGC 61.117 66.667 0.00 0.00 0.00 5.25
88 89 2.025969 CACGCACTCAGACCAGCAG 61.026 63.158 0.00 0.00 0.00 4.24
89 90 2.029518 CACGCACTCAGACCAGCA 59.970 61.111 0.00 0.00 0.00 4.41
90 91 2.029666 ACACGCACTCAGACCAGC 59.970 61.111 0.00 0.00 0.00 4.85
91 92 0.037882 ATCACACGCACTCAGACCAG 60.038 55.000 0.00 0.00 0.00 4.00
92 93 0.392706 AATCACACGCACTCAGACCA 59.607 50.000 0.00 0.00 0.00 4.02
93 94 1.512926 AAATCACACGCACTCAGACC 58.487 50.000 0.00 0.00 0.00 3.85
94 95 3.307242 GGATAAATCACACGCACTCAGAC 59.693 47.826 0.00 0.00 0.00 3.51
95 96 3.521560 GGATAAATCACACGCACTCAGA 58.478 45.455 0.00 0.00 0.00 3.27
96 97 2.609459 GGGATAAATCACACGCACTCAG 59.391 50.000 0.00 0.00 0.00 3.35
97 98 2.627945 GGGATAAATCACACGCACTCA 58.372 47.619 0.00 0.00 0.00 3.41
98 99 1.593006 CGGGATAAATCACACGCACTC 59.407 52.381 0.00 0.00 0.00 3.51
99 100 1.206132 TCGGGATAAATCACACGCACT 59.794 47.619 0.00 0.00 0.00 4.40
100 101 1.593006 CTCGGGATAAATCACACGCAC 59.407 52.381 0.00 0.00 0.00 5.34
101 102 1.478916 TCTCGGGATAAATCACACGCA 59.521 47.619 0.00 0.00 0.00 5.24
102 103 1.859080 GTCTCGGGATAAATCACACGC 59.141 52.381 0.00 0.00 0.00 5.34
103 104 2.117137 CGTCTCGGGATAAATCACACG 58.883 52.381 0.00 0.00 0.00 4.49
104 105 3.160777 ACGTCTCGGGATAAATCACAC 57.839 47.619 0.00 0.00 0.00 3.82
105 106 3.880047 AACGTCTCGGGATAAATCACA 57.120 42.857 0.00 0.00 0.00 3.58
106 107 4.628333 TGAAAACGTCTCGGGATAAATCAC 59.372 41.667 0.00 0.00 0.00 3.06
107 108 4.628333 GTGAAAACGTCTCGGGATAAATCA 59.372 41.667 0.00 0.00 0.00 2.57
108 109 4.033702 GGTGAAAACGTCTCGGGATAAATC 59.966 45.833 0.00 0.00 0.00 2.17
109 110 3.937079 GGTGAAAACGTCTCGGGATAAAT 59.063 43.478 0.00 0.00 0.00 1.40
110 111 3.328505 GGTGAAAACGTCTCGGGATAAA 58.671 45.455 0.00 0.00 0.00 1.40
111 112 2.671914 CGGTGAAAACGTCTCGGGATAA 60.672 50.000 0.00 0.00 0.00 1.75
112 113 1.135315 CGGTGAAAACGTCTCGGGATA 60.135 52.381 0.00 0.00 0.00 2.59
113 114 0.389426 CGGTGAAAACGTCTCGGGAT 60.389 55.000 0.00 0.00 0.00 3.85
114 115 1.007038 CGGTGAAAACGTCTCGGGA 60.007 57.895 0.00 0.00 0.00 5.14
115 116 2.025418 CCGGTGAAAACGTCTCGGG 61.025 63.158 0.00 0.00 38.91 5.14
116 117 2.664436 GCCGGTGAAAACGTCTCGG 61.664 63.158 1.90 0.00 42.61 4.63
117 118 2.851104 GCCGGTGAAAACGTCTCG 59.149 61.111 1.90 0.00 0.00 4.04
118 119 2.664436 CCGCCGGTGAAAACGTCTC 61.664 63.158 18.79 0.00 0.00 3.36
119 120 2.663852 CCGCCGGTGAAAACGTCT 60.664 61.111 18.79 0.00 0.00 4.18
120 121 3.719144 CCCGCCGGTGAAAACGTC 61.719 66.667 18.79 0.00 0.00 4.34
134 135 3.861797 ATTACCCAGCTCCGCCCG 61.862 66.667 0.00 0.00 0.00 6.13
135 136 2.203209 CATTACCCAGCTCCGCCC 60.203 66.667 0.00 0.00 0.00 6.13
136 137 2.203209 CCATTACCCAGCTCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
137 138 2.203209 CCCATTACCCAGCTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
138 139 1.146263 GTCCCATTACCCAGCTCCG 59.854 63.158 0.00 0.00 0.00 4.63
139 140 0.181350 CAGTCCCATTACCCAGCTCC 59.819 60.000 0.00 0.00 0.00 4.70
140 141 0.464554 GCAGTCCCATTACCCAGCTC 60.465 60.000 0.00 0.00 0.00 4.09
141 142 1.609783 GCAGTCCCATTACCCAGCT 59.390 57.895 0.00 0.00 0.00 4.24
142 143 1.819632 CGCAGTCCCATTACCCAGC 60.820 63.158 0.00 0.00 0.00 4.85
143 144 0.744414 CACGCAGTCCCATTACCCAG 60.744 60.000 0.00 0.00 41.61 4.45
144 145 1.298340 CACGCAGTCCCATTACCCA 59.702 57.895 0.00 0.00 41.61 4.51
145 146 1.451387 CCACGCAGTCCCATTACCC 60.451 63.158 0.00 0.00 41.61 3.69
146 147 2.112815 GCCACGCAGTCCCATTACC 61.113 63.158 0.00 0.00 41.61 2.85
147 148 2.112815 GGCCACGCAGTCCCATTAC 61.113 63.158 0.00 0.00 41.61 1.89
148 149 2.270850 GGCCACGCAGTCCCATTA 59.729 61.111 0.00 0.00 41.61 1.90
184 185 4.421479 AGAACCCAGACGCGCTCG 62.421 66.667 5.73 0.00 42.43 5.03
185 186 2.507324 GAGAACCCAGACGCGCTC 60.507 66.667 5.73 2.87 0.00 5.03
186 187 4.070552 GGAGAACCCAGACGCGCT 62.071 66.667 5.73 0.50 34.14 5.92
188 189 3.966026 GACGGAGAACCCAGACGCG 62.966 68.421 3.53 3.53 34.14 6.01
189 190 2.126031 GACGGAGAACCCAGACGC 60.126 66.667 0.00 0.00 34.14 5.19
190 191 2.273179 TGGACGGAGAACCCAGACG 61.273 63.158 0.00 0.00 34.14 4.18
191 192 3.787394 TGGACGGAGAACCCAGAC 58.213 61.111 0.00 0.00 34.14 3.51
194 195 3.691342 CGCTGGACGGAGAACCCA 61.691 66.667 0.00 0.00 38.44 4.51
195 196 3.358076 CTCGCTGGACGGAGAACCC 62.358 68.421 0.00 0.00 43.89 4.11
196 197 2.182030 CTCGCTGGACGGAGAACC 59.818 66.667 0.00 0.00 43.89 3.62
197 198 2.507324 GCTCGCTGGACGGAGAAC 60.507 66.667 0.00 0.00 43.89 3.01
198 199 4.116328 CGCTCGCTGGACGGAGAA 62.116 66.667 0.00 0.00 43.89 2.87
227 228 1.280886 CTCATCGGATAGCTGCGTGC 61.281 60.000 0.00 0.00 43.29 5.34
228 229 0.312102 TCTCATCGGATAGCTGCGTG 59.688 55.000 0.00 0.00 37.50 5.34
229 230 1.201181 GATCTCATCGGATAGCTGCGT 59.799 52.381 0.00 0.00 37.50 5.24
230 231 1.906757 GATCTCATCGGATAGCTGCG 58.093 55.000 0.00 0.00 37.59 5.18
241 242 0.244994 CACCCGGATCCGATCTCATC 59.755 60.000 35.42 0.00 42.83 2.92
242 243 1.188219 CCACCCGGATCCGATCTCAT 61.188 60.000 35.42 10.56 42.83 2.90
243 244 1.832608 CCACCCGGATCCGATCTCA 60.833 63.158 35.42 0.00 42.83 3.27
244 245 3.052081 CCACCCGGATCCGATCTC 58.948 66.667 35.42 0.00 42.83 2.75
245 246 3.234730 GCCACCCGGATCCGATCT 61.235 66.667 35.42 13.80 42.83 2.75
246 247 4.664677 CGCCACCCGGATCCGATC 62.665 72.222 35.42 16.53 42.83 3.69
251 252 4.090588 TCCAACGCCACCCGGATC 62.091 66.667 0.73 0.00 42.52 3.36
252 253 4.404098 GTCCAACGCCACCCGGAT 62.404 66.667 0.73 0.00 42.52 4.18
255 256 4.308458 TCAGTCCAACGCCACCCG 62.308 66.667 0.00 0.00 44.21 5.28
256 257 2.668550 GTCAGTCCAACGCCACCC 60.669 66.667 0.00 0.00 0.00 4.61
257 258 2.668550 GGTCAGTCCAACGCCACC 60.669 66.667 0.00 0.00 35.97 4.61
258 259 2.668550 GGGTCAGTCCAACGCCAC 60.669 66.667 0.00 0.00 38.11 5.01
259 260 4.308458 CGGGTCAGTCCAACGCCA 62.308 66.667 0.00 0.00 38.11 5.69
263 264 4.980805 TGCGCGGGTCAGTCCAAC 62.981 66.667 8.83 0.00 38.11 3.77
264 265 4.980805 GTGCGCGGGTCAGTCCAA 62.981 66.667 8.83 0.00 38.11 3.53
286 287 3.818121 TTCCGCACTTCACCACCGG 62.818 63.158 0.00 0.00 40.25 5.28
287 288 1.671054 ATTCCGCACTTCACCACCG 60.671 57.895 0.00 0.00 0.00 4.94
288 289 0.605319 TCATTCCGCACTTCACCACC 60.605 55.000 0.00 0.00 0.00 4.61
289 290 0.798776 CTCATTCCGCACTTCACCAC 59.201 55.000 0.00 0.00 0.00 4.16
290 291 0.396435 ACTCATTCCGCACTTCACCA 59.604 50.000 0.00 0.00 0.00 4.17
291 292 1.523758 AACTCATTCCGCACTTCACC 58.476 50.000 0.00 0.00 0.00 4.02
292 293 2.411547 CGAAACTCATTCCGCACTTCAC 60.412 50.000 0.00 0.00 34.34 3.18
293 294 1.798223 CGAAACTCATTCCGCACTTCA 59.202 47.619 0.00 0.00 34.34 3.02
294 295 1.464189 GCGAAACTCATTCCGCACTTC 60.464 52.381 0.00 0.00 37.45 3.01
295 296 0.517316 GCGAAACTCATTCCGCACTT 59.483 50.000 0.00 0.00 37.45 3.16
296 297 1.298859 GGCGAAACTCATTCCGCACT 61.299 55.000 0.00 0.00 38.47 4.40
297 298 1.134694 GGCGAAACTCATTCCGCAC 59.865 57.895 0.00 0.00 38.47 5.34
298 299 1.003839 AGGCGAAACTCATTCCGCA 60.004 52.632 0.00 0.00 38.47 5.69
299 300 1.706287 GGAGGCGAAACTCATTCCGC 61.706 60.000 0.00 0.00 39.27 5.54
300 301 0.391130 TGGAGGCGAAACTCATTCCG 60.391 55.000 0.00 0.00 39.27 4.30
301 302 2.044123 ATGGAGGCGAAACTCATTCC 57.956 50.000 0.00 0.00 39.27 3.01
302 303 3.191371 ACAAATGGAGGCGAAACTCATTC 59.809 43.478 0.00 0.00 39.27 2.67
303 304 3.157087 ACAAATGGAGGCGAAACTCATT 58.843 40.909 0.00 0.00 39.27 2.57
304 305 2.749621 GACAAATGGAGGCGAAACTCAT 59.250 45.455 0.00 0.00 39.27 2.90
305 306 2.151202 GACAAATGGAGGCGAAACTCA 58.849 47.619 0.00 0.00 39.27 3.41
306 307 1.128692 CGACAAATGGAGGCGAAACTC 59.871 52.381 0.00 0.00 36.76 3.01
307 308 1.156736 CGACAAATGGAGGCGAAACT 58.843 50.000 0.00 0.00 0.00 2.66
308 309 0.454452 GCGACAAATGGAGGCGAAAC 60.454 55.000 0.00 0.00 0.00 2.78
309 310 1.873165 GCGACAAATGGAGGCGAAA 59.127 52.632 0.00 0.00 0.00 3.46
310 311 3.573558 GCGACAAATGGAGGCGAA 58.426 55.556 0.00 0.00 0.00 4.70
313 314 3.100862 GAGCGCGACAAATGGAGGC 62.101 63.158 12.10 0.00 0.00 4.70
314 315 2.464459 GGAGCGCGACAAATGGAGG 61.464 63.158 12.10 0.00 0.00 4.30
315 316 2.802667 CGGAGCGCGACAAATGGAG 61.803 63.158 12.10 0.00 0.00 3.86
316 317 2.813474 CGGAGCGCGACAAATGGA 60.813 61.111 12.10 0.00 0.00 3.41
336 337 2.303549 AATCTGCCGGCCTTCTCGAG 62.304 60.000 26.77 13.09 0.00 4.04
337 338 1.899437 AAATCTGCCGGCCTTCTCGA 61.899 55.000 26.77 10.89 0.00 4.04
338 339 1.026718 AAAATCTGCCGGCCTTCTCG 61.027 55.000 26.77 5.27 0.00 4.04
339 340 1.177401 AAAAATCTGCCGGCCTTCTC 58.823 50.000 26.77 0.00 0.00 2.87
340 341 2.092323 GTAAAAATCTGCCGGCCTTCT 58.908 47.619 26.77 2.63 0.00 2.85
341 342 1.202143 CGTAAAAATCTGCCGGCCTTC 60.202 52.381 26.77 0.00 0.00 3.46
342 343 0.808755 CGTAAAAATCTGCCGGCCTT 59.191 50.000 26.77 12.30 0.00 4.35
343 344 0.035820 TCGTAAAAATCTGCCGGCCT 60.036 50.000 26.77 5.57 0.00 5.19
344 345 0.098200 GTCGTAAAAATCTGCCGGCC 59.902 55.000 26.77 6.44 0.00 6.13
345 346 0.247537 CGTCGTAAAAATCTGCCGGC 60.248 55.000 22.73 22.73 0.00 6.13
346 347 0.247537 GCGTCGTAAAAATCTGCCGG 60.248 55.000 0.00 0.00 0.00 6.13
347 348 0.440758 TGCGTCGTAAAAATCTGCCG 59.559 50.000 0.00 0.00 0.00 5.69
348 349 1.465187 GGTGCGTCGTAAAAATCTGCC 60.465 52.381 0.00 0.00 0.00 4.85
349 350 1.785518 CGGTGCGTCGTAAAAATCTGC 60.786 52.381 0.00 0.00 0.00 4.26
350 351 1.722464 TCGGTGCGTCGTAAAAATCTG 59.278 47.619 0.00 0.00 0.00 2.90
351 352 1.723003 GTCGGTGCGTCGTAAAAATCT 59.277 47.619 0.00 0.00 0.00 2.40
352 353 1.201845 GGTCGGTGCGTCGTAAAAATC 60.202 52.381 0.00 0.00 0.00 2.17
353 354 0.792031 GGTCGGTGCGTCGTAAAAAT 59.208 50.000 0.00 0.00 0.00 1.82
354 355 1.547292 CGGTCGGTGCGTCGTAAAAA 61.547 55.000 0.00 0.00 0.00 1.94
355 356 2.015627 CGGTCGGTGCGTCGTAAAA 61.016 57.895 0.00 0.00 0.00 1.52
356 357 2.399511 TTCGGTCGGTGCGTCGTAAA 62.400 55.000 0.00 0.00 0.00 2.01
357 358 2.902419 TTCGGTCGGTGCGTCGTAA 61.902 57.895 0.00 0.00 0.00 3.18
358 359 3.353029 TTCGGTCGGTGCGTCGTA 61.353 61.111 0.00 0.00 0.00 3.43
359 360 4.988486 GTTCGGTCGGTGCGTCGT 62.988 66.667 0.00 0.00 0.00 4.34
361 362 4.688419 TCGTTCGGTCGGTGCGTC 62.688 66.667 1.08 0.00 0.00 5.19
362 363 4.988486 GTCGTTCGGTCGGTGCGT 62.988 66.667 1.08 0.00 0.00 5.24
364 365 3.853597 AAGGTCGTTCGGTCGGTGC 62.854 63.158 1.08 0.00 0.00 5.01
365 366 1.280206 GAAAGGTCGTTCGGTCGGTG 61.280 60.000 1.08 0.00 0.00 4.94
366 367 1.006922 GAAAGGTCGTTCGGTCGGT 60.007 57.895 1.08 0.00 0.00 4.69
367 368 1.735559 GGAAAGGTCGTTCGGTCGG 60.736 63.158 1.08 0.00 0.00 4.79
368 369 0.523072 TAGGAAAGGTCGTTCGGTCG 59.477 55.000 0.00 0.00 0.00 4.79
369 370 2.730550 TTAGGAAAGGTCGTTCGGTC 57.269 50.000 0.00 0.00 0.00 4.79
370 371 3.133691 GTTTTAGGAAAGGTCGTTCGGT 58.866 45.455 0.00 0.00 0.00 4.69
371 372 3.396560 AGTTTTAGGAAAGGTCGTTCGG 58.603 45.455 0.00 0.00 0.00 4.30
372 373 5.006941 TGAAAGTTTTAGGAAAGGTCGTTCG 59.993 40.000 0.00 0.00 0.00 3.95
373 374 6.259387 TCTGAAAGTTTTAGGAAAGGTCGTTC 59.741 38.462 7.48 0.00 33.76 3.95
374 375 6.037940 GTCTGAAAGTTTTAGGAAAGGTCGTT 59.962 38.462 7.48 0.00 33.76 3.85
375 376 5.526479 GTCTGAAAGTTTTAGGAAAGGTCGT 59.474 40.000 7.48 0.00 33.76 4.34
376 377 5.526111 TGTCTGAAAGTTTTAGGAAAGGTCG 59.474 40.000 7.48 0.00 33.76 4.79
377 378 6.766467 TCTGTCTGAAAGTTTTAGGAAAGGTC 59.234 38.462 7.48 0.00 33.76 3.85
378 379 6.659824 TCTGTCTGAAAGTTTTAGGAAAGGT 58.340 36.000 7.48 0.00 33.76 3.50
379 380 7.308830 CCATCTGTCTGAAAGTTTTAGGAAAGG 60.309 40.741 7.48 1.76 33.76 3.11
380 381 7.588512 CCATCTGTCTGAAAGTTTTAGGAAAG 58.411 38.462 7.48 3.84 33.76 2.62
381 382 6.016276 GCCATCTGTCTGAAAGTTTTAGGAAA 60.016 38.462 7.48 0.00 33.76 3.13
382 383 5.473504 GCCATCTGTCTGAAAGTTTTAGGAA 59.526 40.000 7.48 0.00 33.76 3.36
383 384 5.003804 GCCATCTGTCTGAAAGTTTTAGGA 58.996 41.667 7.48 0.00 33.76 2.94
384 385 5.006386 AGCCATCTGTCTGAAAGTTTTAGG 58.994 41.667 7.48 0.00 33.76 2.69
385 386 6.650807 TGTAGCCATCTGTCTGAAAGTTTTAG 59.349 38.462 1.00 1.00 33.76 1.85
386 387 6.530120 TGTAGCCATCTGTCTGAAAGTTTTA 58.470 36.000 0.00 0.00 33.76 1.52
387 388 5.376625 TGTAGCCATCTGTCTGAAAGTTTT 58.623 37.500 0.00 0.00 33.76 2.43
388 389 4.973168 TGTAGCCATCTGTCTGAAAGTTT 58.027 39.130 0.00 0.00 33.76 2.66
389 390 4.623932 TGTAGCCATCTGTCTGAAAGTT 57.376 40.909 0.00 0.00 33.76 2.66
390 391 4.764172 GATGTAGCCATCTGTCTGAAAGT 58.236 43.478 0.00 0.00 43.49 2.66
401 402 4.100808 ACTTTGGAGAGAGATGTAGCCATC 59.899 45.833 0.00 0.00 46.56 3.51
402 403 4.036518 ACTTTGGAGAGAGATGTAGCCAT 58.963 43.478 0.00 0.00 0.00 4.40
403 404 3.445008 ACTTTGGAGAGAGATGTAGCCA 58.555 45.455 0.00 0.00 0.00 4.75
404 405 3.704061 AGACTTTGGAGAGAGATGTAGCC 59.296 47.826 0.00 0.00 0.00 3.93
405 406 5.337578 AAGACTTTGGAGAGAGATGTAGC 57.662 43.478 0.00 0.00 0.00 3.58
406 407 8.093927 AGAAAAAGACTTTGGAGAGAGATGTAG 58.906 37.037 0.06 0.00 0.00 2.74
407 408 7.967908 AGAAAAAGACTTTGGAGAGAGATGTA 58.032 34.615 0.06 0.00 0.00 2.29
408 409 6.836242 AGAAAAAGACTTTGGAGAGAGATGT 58.164 36.000 0.06 0.00 0.00 3.06
409 410 8.839310 TTAGAAAAAGACTTTGGAGAGAGATG 57.161 34.615 0.06 0.00 0.00 2.90
410 411 8.100164 CCTTAGAAAAAGACTTTGGAGAGAGAT 58.900 37.037 0.06 0.00 0.00 2.75
411 412 7.445945 CCTTAGAAAAAGACTTTGGAGAGAGA 58.554 38.462 0.06 0.00 0.00 3.10
412 413 6.148645 GCCTTAGAAAAAGACTTTGGAGAGAG 59.851 42.308 0.06 0.00 0.00 3.20
413 414 5.998363 GCCTTAGAAAAAGACTTTGGAGAGA 59.002 40.000 0.06 0.00 0.00 3.10
414 415 5.182190 GGCCTTAGAAAAAGACTTTGGAGAG 59.818 44.000 0.06 0.00 0.00 3.20
415 416 5.070685 GGCCTTAGAAAAAGACTTTGGAGA 58.929 41.667 0.06 0.00 0.00 3.71
416 417 4.827284 TGGCCTTAGAAAAAGACTTTGGAG 59.173 41.667 3.32 0.00 0.00 3.86
417 418 4.798882 TGGCCTTAGAAAAAGACTTTGGA 58.201 39.130 3.32 0.00 0.00 3.53
418 419 5.069119 AGTTGGCCTTAGAAAAAGACTTTGG 59.931 40.000 3.32 0.00 0.00 3.28
419 420 6.149129 AGTTGGCCTTAGAAAAAGACTTTG 57.851 37.500 3.32 0.00 0.00 2.77
420 421 5.302059 GGAGTTGGCCTTAGAAAAAGACTTT 59.698 40.000 3.32 0.00 0.00 2.66
421 422 4.827835 GGAGTTGGCCTTAGAAAAAGACTT 59.172 41.667 3.32 0.00 0.00 3.01
422 423 4.141251 TGGAGTTGGCCTTAGAAAAAGACT 60.141 41.667 3.32 0.00 0.00 3.24
423 424 4.023107 GTGGAGTTGGCCTTAGAAAAAGAC 60.023 45.833 3.32 0.00 0.00 3.01
424 425 4.142038 GTGGAGTTGGCCTTAGAAAAAGA 58.858 43.478 3.32 0.00 0.00 2.52
425 426 3.255888 GGTGGAGTTGGCCTTAGAAAAAG 59.744 47.826 3.32 0.00 0.00 2.27
426 427 3.227614 GGTGGAGTTGGCCTTAGAAAAA 58.772 45.455 3.32 0.00 0.00 1.94
427 428 2.812613 CGGTGGAGTTGGCCTTAGAAAA 60.813 50.000 3.32 0.00 0.00 2.29
428 429 1.271163 CGGTGGAGTTGGCCTTAGAAA 60.271 52.381 3.32 0.00 0.00 2.52
429 430 0.323629 CGGTGGAGTTGGCCTTAGAA 59.676 55.000 3.32 0.00 0.00 2.10
470 471 2.894765 CGTTTTACCCCAAATGAACCCT 59.105 45.455 0.00 0.00 0.00 4.34
472 473 2.892215 TCCGTTTTACCCCAAATGAACC 59.108 45.455 0.00 0.00 0.00 3.62
475 476 3.225177 TGTCCGTTTTACCCCAAATGA 57.775 42.857 0.00 0.00 0.00 2.57
477 478 3.243941 GCTTTGTCCGTTTTACCCCAAAT 60.244 43.478 0.00 0.00 0.00 2.32
579 580 1.665442 CTTCGGCCCCAAAACAAGG 59.335 57.895 0.00 0.00 0.00 3.61
582 583 3.291383 CGCTTCGGCCCCAAAACA 61.291 61.111 0.00 0.00 37.76 2.83
602 603 1.000506 GCCAGAGAGTGTCCGTTTGTA 59.999 52.381 0.00 0.00 0.00 2.41
606 607 1.837051 TGGCCAGAGAGTGTCCGTT 60.837 57.895 0.00 0.00 0.00 4.44
971 977 2.766400 GCGGAGGAGGAGTCGACTG 61.766 68.421 25.58 6.87 0.00 3.51
972 978 2.438795 GCGGAGGAGGAGTCGACT 60.439 66.667 20.18 20.18 0.00 4.18
998 1004 3.289834 GCTGCCGGTATGCCATGG 61.290 66.667 7.63 7.63 34.09 3.66
999 1005 2.203252 AGCTGCCGGTATGCCATG 60.203 61.111 1.90 0.00 34.09 3.66
1000 1006 2.111878 GAGCTGCCGGTATGCCAT 59.888 61.111 1.90 0.00 34.09 4.40
1001 1007 4.175337 GGAGCTGCCGGTATGCCA 62.175 66.667 1.90 0.00 34.09 4.92
1024 1030 3.197790 CGTGGATGCCTGCTTCGG 61.198 66.667 0.00 0.00 0.00 4.30
1025 1031 2.125552 TCGTGGATGCCTGCTTCG 60.126 61.111 0.00 0.00 0.00 3.79
1026 1032 2.109126 GGTCGTGGATGCCTGCTTC 61.109 63.158 0.00 0.00 0.00 3.86
1027 1033 2.045926 GGTCGTGGATGCCTGCTT 60.046 61.111 0.00 0.00 0.00 3.91
1028 1034 4.457496 CGGTCGTGGATGCCTGCT 62.457 66.667 0.00 0.00 0.00 4.24
1077 1083 3.781770 CTCCTCGCCGATGCAGACC 62.782 68.421 0.00 0.00 37.32 3.85
1078 1084 2.279120 CTCCTCGCCGATGCAGAC 60.279 66.667 0.00 0.00 37.32 3.51
1079 1085 3.531207 CCTCCTCGCCGATGCAGA 61.531 66.667 0.00 0.00 37.32 4.26
1080 1086 4.598894 CCCTCCTCGCCGATGCAG 62.599 72.222 0.00 0.00 37.32 4.41
1104 1110 2.740826 ATGGCGAACCGTTCCACG 60.741 61.111 5.67 0.00 42.11 4.94
1105 1111 2.867472 CATGGCGAACCGTTCCAC 59.133 61.111 5.67 0.00 39.70 4.02
1106 1112 3.053291 GCATGGCGAACCGTTCCA 61.053 61.111 5.67 0.00 39.70 3.53
1162 1168 4.463879 CTGGGAGGCGCACAGGAG 62.464 72.222 13.16 0.00 44.59 3.69
1166 1172 3.897681 TACTCCTGGGAGGCGCACA 62.898 63.158 19.32 0.92 45.88 4.57
1167 1173 3.075005 TACTCCTGGGAGGCGCAC 61.075 66.667 19.32 1.82 45.88 5.34
1168 1174 3.075005 GTACTCCTGGGAGGCGCA 61.075 66.667 19.32 0.98 45.88 6.09
1169 1175 4.208686 CGTACTCCTGGGAGGCGC 62.209 72.222 19.32 0.00 45.88 6.53
1170 1176 3.528370 CCGTACTCCTGGGAGGCG 61.528 72.222 19.32 19.94 45.88 5.52
1176 1182 2.779033 GCCGTACCCGTACTCCTGG 61.779 68.421 3.66 0.00 34.04 4.45
1177 1183 2.779033 GGCCGTACCCGTACTCCTG 61.779 68.421 3.66 0.00 34.04 3.86
1178 1184 2.440980 GGCCGTACCCGTACTCCT 60.441 66.667 3.66 0.00 34.04 3.69
1179 1185 2.755469 TGGCCGTACCCGTACTCC 60.755 66.667 0.00 5.20 37.83 3.85
1180 1186 2.491621 GTGGCCGTACCCGTACTC 59.508 66.667 0.00 0.00 37.83 2.59
1181 1187 3.070576 GGTGGCCGTACCCGTACT 61.071 66.667 0.48 0.00 37.83 2.73
1231 1237 4.516195 GAGGAGGCCGCGGAAGTC 62.516 72.222 33.48 20.87 0.00 3.01
1242 1248 3.213402 GAGAGGCGGACGAGGAGG 61.213 72.222 0.00 0.00 0.00 4.30
1243 1249 3.213402 GGAGAGGCGGACGAGGAG 61.213 72.222 0.00 0.00 0.00 3.69
1246 1252 3.878519 GTCGGAGAGGCGGACGAG 61.879 72.222 0.00 0.00 36.95 4.18
1249 1255 2.490685 GAAGTCGGAGAGGCGGAC 59.509 66.667 0.00 0.00 44.57 4.79
1250 1256 2.754658 GGAAGTCGGAGAGGCGGA 60.755 66.667 0.00 0.00 36.95 5.54
1251 1257 3.839432 GGGAAGTCGGAGAGGCGG 61.839 72.222 0.00 0.00 36.95 6.13
1252 1258 2.905935 TAGGGGAAGTCGGAGAGGCG 62.906 65.000 0.00 0.00 36.95 5.52
1253 1259 1.076192 TAGGGGAAGTCGGAGAGGC 60.076 63.158 0.00 0.00 36.95 4.70
1254 1260 1.102222 CGTAGGGGAAGTCGGAGAGG 61.102 65.000 0.00 0.00 36.95 3.69
1255 1261 1.726533 GCGTAGGGGAAGTCGGAGAG 61.727 65.000 0.00 0.00 36.95 3.20
1256 1262 1.751927 GCGTAGGGGAAGTCGGAGA 60.752 63.158 0.00 0.00 0.00 3.71
1257 1263 2.783288 GGCGTAGGGGAAGTCGGAG 61.783 68.421 0.00 0.00 0.00 4.63
1258 1264 2.757099 GGCGTAGGGGAAGTCGGA 60.757 66.667 0.00 0.00 0.00 4.55
1259 1265 4.203076 CGGCGTAGGGGAAGTCGG 62.203 72.222 0.00 0.00 30.39 4.79
1260 1266 3.136123 TCGGCGTAGGGGAAGTCG 61.136 66.667 6.85 0.00 35.84 4.18
1261 1267 2.493501 GTCGGCGTAGGGGAAGTC 59.506 66.667 6.85 0.00 0.00 3.01
1262 1268 3.446570 CGTCGGCGTAGGGGAAGT 61.447 66.667 6.85 0.00 0.00 3.01
1263 1269 3.122250 CTCGTCGGCGTAGGGGAAG 62.122 68.421 10.18 0.00 39.49 3.46
1264 1270 3.136123 CTCGTCGGCGTAGGGGAA 61.136 66.667 10.18 0.00 39.49 3.97
1265 1271 4.415150 ACTCGTCGGCGTAGGGGA 62.415 66.667 10.18 0.00 39.49 4.81
1266 1272 4.189188 CACTCGTCGGCGTAGGGG 62.189 72.222 10.18 0.00 39.49 4.79
1267 1273 4.849329 GCACTCGTCGGCGTAGGG 62.849 72.222 10.18 8.10 39.49 3.53
1268 1274 2.376231 CTAGCACTCGTCGGCGTAGG 62.376 65.000 10.18 3.66 39.49 3.18
1269 1275 1.011019 CTAGCACTCGTCGGCGTAG 60.011 63.158 10.18 8.37 39.49 3.51
1270 1276 2.466982 CCTAGCACTCGTCGGCGTA 61.467 63.158 10.18 0.00 39.49 4.42
1271 1277 3.812019 CCTAGCACTCGTCGGCGT 61.812 66.667 10.18 0.00 39.49 5.68
1272 1278 4.554363 CCCTAGCACTCGTCGGCG 62.554 72.222 1.15 1.15 39.92 6.46
1273 1279 4.208686 CCCCTAGCACTCGTCGGC 62.209 72.222 0.00 0.00 0.00 5.54
1274 1280 4.208686 GCCCCTAGCACTCGTCGG 62.209 72.222 0.00 0.00 42.97 4.79
1275 1281 4.208686 GGCCCCTAGCACTCGTCG 62.209 72.222 0.00 0.00 46.50 5.12
1276 1282 4.208686 CGGCCCCTAGCACTCGTC 62.209 72.222 0.00 0.00 46.50 4.20
1278 1284 4.208686 GACGGCCCCTAGCACTCG 62.209 72.222 0.00 0.00 46.50 4.18
1279 1285 3.851128 GGACGGCCCCTAGCACTC 61.851 72.222 0.00 0.00 46.50 3.51
1280 1286 4.400251 AGGACGGCCCCTAGCACT 62.400 66.667 1.76 0.00 46.50 4.40
1281 1287 3.851128 GAGGACGGCCCCTAGCAC 61.851 72.222 1.76 0.00 46.50 4.40
1311 1317 4.400961 AGTTCTCCAGCGGCAGGC 62.401 66.667 6.53 0.00 44.05 4.85
1312 1318 2.125350 GAGTTCTCCAGCGGCAGG 60.125 66.667 4.84 4.84 0.00 4.85
1313 1319 1.447489 CAGAGTTCTCCAGCGGCAG 60.447 63.158 1.45 0.00 0.00 4.85
1314 1320 2.659016 CAGAGTTCTCCAGCGGCA 59.341 61.111 1.45 0.00 0.00 5.69
1315 1321 2.817396 GCAGAGTTCTCCAGCGGC 60.817 66.667 0.00 0.00 0.00 6.53
1316 1322 2.125350 GGCAGAGTTCTCCAGCGG 60.125 66.667 8.13 0.00 0.00 5.52
1317 1323 2.125350 GGGCAGAGTTCTCCAGCG 60.125 66.667 8.13 0.00 0.00 5.18
1318 1324 2.270527 GGGGCAGAGTTCTCCAGC 59.729 66.667 6.39 6.39 0.00 4.85
1319 1325 1.920325 TGGGGGCAGAGTTCTCCAG 60.920 63.158 0.00 0.00 0.00 3.86
1320 1326 2.206900 TGGGGGCAGAGTTCTCCA 59.793 61.111 0.00 0.00 0.00 3.86
1321 1327 2.671682 GTGGGGGCAGAGTTCTCC 59.328 66.667 0.00 0.00 0.00 3.71
1322 1328 2.671682 GGTGGGGGCAGAGTTCTC 59.328 66.667 0.00 0.00 0.00 2.87
1323 1329 2.936032 GGGTGGGGGCAGAGTTCT 60.936 66.667 0.00 0.00 0.00 3.01
1324 1330 4.410400 CGGGTGGGGGCAGAGTTC 62.410 72.222 0.00 0.00 0.00 3.01
1325 1331 4.974438 TCGGGTGGGGGCAGAGTT 62.974 66.667 0.00 0.00 0.00 3.01
1404 1410 4.500116 GAGCTCCCAGACGCGTCC 62.500 72.222 34.08 18.34 0.00 4.79
1405 1411 4.500116 GGAGCTCCCAGACGCGTC 62.500 72.222 31.30 31.30 34.14 5.19
1419 1425 4.170062 CATTGCGCACGCCTGGAG 62.170 66.667 11.12 0.00 41.09 3.86
1484 1490 4.641645 TTGCACCCCACCTGCTCG 62.642 66.667 0.00 0.00 35.53 5.03
1485 1491 2.674380 CTTGCACCCCACCTGCTC 60.674 66.667 0.00 0.00 35.53 4.26
1486 1492 4.290622 CCTTGCACCCCACCTGCT 62.291 66.667 0.00 0.00 35.53 4.24
1518 1524 4.796231 CTTCCCACCCGCTCGTCG 62.796 72.222 0.00 0.00 38.08 5.12
1519 1525 4.452733 CCTTCCCACCCGCTCGTC 62.453 72.222 0.00 0.00 0.00 4.20
1521 1527 4.760047 CACCTTCCCACCCGCTCG 62.760 72.222 0.00 0.00 0.00 5.03
1527 1533 4.717313 GTCCCGCACCTTCCCACC 62.717 72.222 0.00 0.00 0.00 4.61
1531 1537 4.754667 GTCCGTCCCGCACCTTCC 62.755 72.222 0.00 0.00 0.00 3.46
1532 1538 2.798148 AATGTCCGTCCCGCACCTTC 62.798 60.000 0.00 0.00 0.00 3.46
1533 1539 2.406002 AAATGTCCGTCCCGCACCTT 62.406 55.000 0.00 0.00 0.00 3.50
1534 1540 2.406002 AAAATGTCCGTCCCGCACCT 62.406 55.000 0.00 0.00 0.00 4.00
1535 1541 1.520600 AAAAATGTCCGTCCCGCACC 61.521 55.000 0.00 0.00 0.00 5.01
1536 1542 0.386731 CAAAAATGTCCGTCCCGCAC 60.387 55.000 0.00 0.00 0.00 5.34
1537 1543 1.519751 CCAAAAATGTCCGTCCCGCA 61.520 55.000 0.00 0.00 0.00 5.69
1538 1544 1.211709 CCAAAAATGTCCGTCCCGC 59.788 57.895 0.00 0.00 0.00 6.13
1539 1545 0.891904 ACCCAAAAATGTCCGTCCCG 60.892 55.000 0.00 0.00 0.00 5.14
1540 1546 0.885879 GACCCAAAAATGTCCGTCCC 59.114 55.000 0.00 0.00 0.00 4.46
1541 1547 0.519961 CGACCCAAAAATGTCCGTCC 59.480 55.000 0.00 0.00 0.00 4.79
1542 1548 0.109919 GCGACCCAAAAATGTCCGTC 60.110 55.000 0.00 0.00 0.00 4.79
1543 1549 0.536460 AGCGACCCAAAAATGTCCGT 60.536 50.000 0.00 0.00 0.00 4.69
1544 1550 0.168128 GAGCGACCCAAAAATGTCCG 59.832 55.000 0.00 0.00 0.00 4.79
1545 1551 1.200020 CAGAGCGACCCAAAAATGTCC 59.800 52.381 0.00 0.00 0.00 4.02
1546 1552 1.880027 ACAGAGCGACCCAAAAATGTC 59.120 47.619 0.00 0.00 0.00 3.06
1547 1553 1.880027 GACAGAGCGACCCAAAAATGT 59.120 47.619 0.00 0.00 0.00 2.71
1548 1554 1.135972 CGACAGAGCGACCCAAAAATG 60.136 52.381 0.00 0.00 0.00 2.32
1549 1555 1.156736 CGACAGAGCGACCCAAAAAT 58.843 50.000 0.00 0.00 0.00 1.82
1550 1556 1.503818 GCGACAGAGCGACCCAAAAA 61.504 55.000 0.00 0.00 0.00 1.94
1551 1557 1.959226 GCGACAGAGCGACCCAAAA 60.959 57.895 0.00 0.00 0.00 2.44
1552 1558 2.357034 GCGACAGAGCGACCCAAA 60.357 61.111 0.00 0.00 0.00 3.28
1571 1577 1.507141 CTTGTGTTCGAGGTGCCCAC 61.507 60.000 0.00 0.00 0.00 4.61
1572 1578 1.227823 CTTGTGTTCGAGGTGCCCA 60.228 57.895 0.00 0.00 0.00 5.36
1573 1579 2.617274 GCTTGTGTTCGAGGTGCCC 61.617 63.158 0.00 0.00 0.00 5.36
1574 1580 1.598130 AGCTTGTGTTCGAGGTGCC 60.598 57.895 0.00 0.00 34.86 5.01
1575 1581 1.571460 CAGCTTGTGTTCGAGGTGC 59.429 57.895 2.47 0.00 43.57 5.01
1576 1582 0.249868 TCCAGCTTGTGTTCGAGGTG 60.250 55.000 7.45 7.45 46.97 4.00
1577 1583 0.249911 GTCCAGCTTGTGTTCGAGGT 60.250 55.000 0.00 0.00 36.36 3.85
1578 1584 0.249868 TGTCCAGCTTGTGTTCGAGG 60.250 55.000 0.00 0.00 0.00 4.63
1579 1585 0.861837 GTGTCCAGCTTGTGTTCGAG 59.138 55.000 0.00 0.00 0.00 4.04
1580 1586 0.874175 CGTGTCCAGCTTGTGTTCGA 60.874 55.000 0.00 0.00 0.00 3.71
1581 1587 1.564622 CGTGTCCAGCTTGTGTTCG 59.435 57.895 0.00 0.00 0.00 3.95
1582 1588 1.279840 GCGTGTCCAGCTTGTGTTC 59.720 57.895 0.00 0.00 0.00 3.18
1583 1589 0.819259 ATGCGTGTCCAGCTTGTGTT 60.819 50.000 0.00 0.00 35.28 3.32
1584 1590 1.227943 ATGCGTGTCCAGCTTGTGT 60.228 52.632 0.00 0.00 35.28 3.72
1585 1591 1.208358 CATGCGTGTCCAGCTTGTG 59.792 57.895 0.00 0.00 35.75 3.33
1586 1592 1.227943 ACATGCGTGTCCAGCTTGT 60.228 52.632 5.51 4.28 44.56 3.16
1587 1593 3.659334 ACATGCGTGTCCAGCTTG 58.341 55.556 5.51 3.13 42.93 4.01
1595 1601 1.196808 GACGAAAATGGACATGCGTGT 59.803 47.619 12.38 12.38 42.49 4.49
1596 1602 1.465689 GGACGAAAATGGACATGCGTG 60.466 52.381 3.82 3.82 31.58 5.34
1597 1603 0.802494 GGACGAAAATGGACATGCGT 59.198 50.000 0.00 7.50 34.39 5.24
1598 1604 0.098728 GGGACGAAAATGGACATGCG 59.901 55.000 0.00 0.00 0.00 4.73
1599 1605 0.455815 GGGGACGAAAATGGACATGC 59.544 55.000 0.00 0.00 0.00 4.06
1600 1606 1.832883 TGGGGACGAAAATGGACATG 58.167 50.000 0.00 0.00 0.00 3.21
1601 1607 2.760092 CAATGGGGACGAAAATGGACAT 59.240 45.455 0.00 0.00 0.00 3.06
1602 1608 2.166829 CAATGGGGACGAAAATGGACA 58.833 47.619 0.00 0.00 0.00 4.02
1603 1609 1.135112 GCAATGGGGACGAAAATGGAC 60.135 52.381 0.00 0.00 0.00 4.02
1604 1610 1.181786 GCAATGGGGACGAAAATGGA 58.818 50.000 0.00 0.00 0.00 3.41
1605 1611 0.175531 GGCAATGGGGACGAAAATGG 59.824 55.000 0.00 0.00 0.00 3.16
1606 1612 0.894141 TGGCAATGGGGACGAAAATG 59.106 50.000 0.00 0.00 0.00 2.32
1607 1613 0.894835 GTGGCAATGGGGACGAAAAT 59.105 50.000 0.00 0.00 0.00 1.82
1608 1614 1.182385 GGTGGCAATGGGGACGAAAA 61.182 55.000 0.00 0.00 0.00 2.29
1609 1615 1.605165 GGTGGCAATGGGGACGAAA 60.605 57.895 0.00 0.00 0.00 3.46
1610 1616 2.034999 GGTGGCAATGGGGACGAA 59.965 61.111 0.00 0.00 0.00 3.85
1611 1617 4.041762 GGGTGGCAATGGGGACGA 62.042 66.667 0.00 0.00 0.00 4.20
1613 1619 3.537961 TTGGGGTGGCAATGGGGAC 62.538 63.158 0.00 0.00 0.00 4.46
1614 1620 2.794803 TTTGGGGTGGCAATGGGGA 61.795 57.895 0.00 0.00 0.00 4.81
1615 1621 2.203907 TTTGGGGTGGCAATGGGG 60.204 61.111 0.00 0.00 0.00 4.96
1616 1622 2.941616 CGTTTGGGGTGGCAATGGG 61.942 63.158 0.00 0.00 0.00 4.00
1617 1623 2.656055 CGTTTGGGGTGGCAATGG 59.344 61.111 0.00 0.00 0.00 3.16
1618 1624 1.257055 ATCCGTTTGGGGTGGCAATG 61.257 55.000 0.00 0.00 36.01 2.82
1619 1625 1.078347 ATCCGTTTGGGGTGGCAAT 59.922 52.632 0.00 0.00 36.01 3.56
1620 1626 1.905843 CATCCGTTTGGGGTGGCAA 60.906 57.895 0.00 0.00 43.76 4.52
1621 1627 2.282816 CATCCGTTTGGGGTGGCA 60.283 61.111 0.00 0.00 43.76 4.92
1625 1631 1.847328 GGATTTCATCCGTTTGGGGT 58.153 50.000 0.00 0.00 40.13 4.95
1634 1640 3.131240 CGTTTTGTCCGGATTTCATCC 57.869 47.619 7.81 0.00 46.22 3.51
1643 1649 1.300388 AGACGTCCGTTTTGTCCGG 60.300 57.895 13.01 0.00 46.83 5.14
1644 1650 0.872881 ACAGACGTCCGTTTTGTCCG 60.873 55.000 13.01 0.00 33.09 4.79
1645 1651 1.292992 AACAGACGTCCGTTTTGTCC 58.707 50.000 13.01 0.00 33.09 4.02
1646 1652 2.538132 CCAAACAGACGTCCGTTTTGTC 60.538 50.000 23.76 0.00 33.14 3.18
1647 1653 1.399089 CCAAACAGACGTCCGTTTTGT 59.601 47.619 23.76 13.49 33.14 2.83
1648 1654 1.268335 CCCAAACAGACGTCCGTTTTG 60.268 52.381 23.76 20.29 33.14 2.44
1649 1655 1.018910 CCCAAACAGACGTCCGTTTT 58.981 50.000 23.76 12.76 33.14 2.43
1650 1656 0.816421 CCCCAAACAGACGTCCGTTT 60.816 55.000 21.31 21.31 35.76 3.60
1651 1657 1.227734 CCCCAAACAGACGTCCGTT 60.228 57.895 13.01 12.12 0.00 4.44
1652 1658 2.373434 GACCCCAAACAGACGTCCGT 62.373 60.000 13.01 4.97 0.00 4.69
1653 1659 1.666872 GACCCCAAACAGACGTCCG 60.667 63.158 13.01 4.15 0.00 4.79
1654 1660 1.666872 CGACCCCAAACAGACGTCC 60.667 63.158 13.01 0.00 0.00 4.79
1655 1661 1.068585 ACGACCCCAAACAGACGTC 59.931 57.895 7.70 7.70 0.00 4.34
1656 1662 1.227438 CACGACCCCAAACAGACGT 60.227 57.895 0.00 0.00 34.40 4.34
1657 1663 2.604174 GCACGACCCCAAACAGACG 61.604 63.158 0.00 0.00 0.00 4.18
1658 1664 2.604174 CGCACGACCCCAAACAGAC 61.604 63.158 0.00 0.00 0.00 3.51
1659 1665 2.280524 CGCACGACCCCAAACAGA 60.281 61.111 0.00 0.00 0.00 3.41
1660 1666 3.353836 CCGCACGACCCCAAACAG 61.354 66.667 0.00 0.00 0.00 3.16
1661 1667 4.178169 ACCGCACGACCCCAAACA 62.178 61.111 0.00 0.00 0.00 2.83
1662 1668 3.656045 CACCGCACGACCCCAAAC 61.656 66.667 0.00 0.00 0.00 2.93
1663 1669 4.939368 CCACCGCACGACCCCAAA 62.939 66.667 0.00 0.00 0.00 3.28
1667 1673 4.309950 AACTCCACCGCACGACCC 62.310 66.667 0.00 0.00 0.00 4.46
1668 1674 3.041940 CAACTCCACCGCACGACC 61.042 66.667 0.00 0.00 0.00 4.79
1669 1675 3.041940 CCAACTCCACCGCACGAC 61.042 66.667 0.00 0.00 0.00 4.34
1670 1676 4.980805 GCCAACTCCACCGCACGA 62.981 66.667 0.00 0.00 0.00 4.35
1672 1678 2.741486 TTAGGCCAACTCCACCGCAC 62.741 60.000 5.01 0.00 0.00 5.34
1673 1679 2.058125 TTTAGGCCAACTCCACCGCA 62.058 55.000 5.01 0.00 0.00 5.69
1674 1680 1.302993 TTTAGGCCAACTCCACCGC 60.303 57.895 5.01 0.00 0.00 5.68
1675 1681 0.676782 CCTTTAGGCCAACTCCACCG 60.677 60.000 5.01 0.00 0.00 4.94
1676 1682 0.323451 CCCTTTAGGCCAACTCCACC 60.323 60.000 5.01 0.00 0.00 4.61
1677 1683 3.266240 CCCTTTAGGCCAACTCCAC 57.734 57.895 5.01 0.00 0.00 4.02
1687 1693 1.068741 CGCCTAGTAGTGCCCTTTAGG 59.931 57.143 0.00 3.16 39.47 2.69
1688 1694 1.538419 GCGCCTAGTAGTGCCCTTTAG 60.538 57.143 0.00 0.00 37.29 1.85
1689 1695 0.462789 GCGCCTAGTAGTGCCCTTTA 59.537 55.000 0.00 0.00 37.29 1.85
1690 1696 1.221021 GCGCCTAGTAGTGCCCTTT 59.779 57.895 0.00 0.00 37.29 3.11
1691 1697 1.686110 AGCGCCTAGTAGTGCCCTT 60.686 57.895 2.29 0.00 44.45 3.95
1692 1698 2.042843 AGCGCCTAGTAGTGCCCT 60.043 61.111 2.29 1.27 44.45 5.19
1693 1699 2.107141 CAGCGCCTAGTAGTGCCC 59.893 66.667 2.29 0.00 44.45 5.36
1694 1700 2.107141 CCAGCGCCTAGTAGTGCC 59.893 66.667 2.29 1.40 44.45 5.01
1695 1701 1.519455 CACCAGCGCCTAGTAGTGC 60.519 63.158 2.29 3.98 43.70 4.40
1696 1702 1.519455 GCACCAGCGCCTAGTAGTG 60.519 63.158 2.29 4.17 0.00 2.74
1697 1703 2.893398 GCACCAGCGCCTAGTAGT 59.107 61.111 2.29 0.00 0.00 2.73
1739 1745 0.322008 TGCAATCGTATGGGTGCACA 60.322 50.000 20.43 0.00 41.85 4.57
1741 1747 1.375853 GCTGCAATCGTATGGGTGCA 61.376 55.000 11.44 11.44 44.36 4.57
1760 1766 1.938577 CAGATCCAACGGCAGATGAAG 59.061 52.381 0.00 0.00 0.00 3.02
1963 1976 2.511600 GCTACATGGCGACGGCTT 60.512 61.111 22.70 13.61 39.81 4.35
1984 1997 4.745837 TTTACGACAACCGGTTAATTGG 57.254 40.909 21.79 9.97 43.93 3.16
2033 2048 1.399727 CGATTTTGCTGGAACCGACAC 60.400 52.381 0.00 0.00 0.00 3.67
2060 2075 0.823356 TTCACTGGAAGGCTGCAACC 60.823 55.000 0.00 0.00 39.30 3.77
2072 2087 2.146342 ACAGCGATGAACTTTCACTGG 58.854 47.619 8.12 0.00 40.49 4.00
2202 2220 6.560253 ACCAGTGTATTTGAGTTTTGCTAG 57.440 37.500 0.00 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.