Multiple sequence alignment - TraesCS3B01G493400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G493400 chr3B 100.000 2412 0 0 1 2412 738911706 738909295 0.000000e+00 4455.0
1 TraesCS3B01G493400 chr3B 93.287 864 50 5 568 1427 738993237 738992378 0.000000e+00 1267.0
2 TraesCS3B01G493400 chr3B 86.420 405 40 7 977 1366 738757576 738757172 1.710000e-116 429.0
3 TraesCS3B01G493400 chr3B 92.727 275 18 2 649 922 738758705 738758432 1.740000e-106 396.0
4 TraesCS3B01G493400 chr3B 80.420 429 70 9 1991 2412 146708640 146708219 5.010000e-82 315.0
5 TraesCS3B01G493400 chr3B 83.704 270 35 2 1888 2149 206427998 206427730 1.850000e-61 246.0
6 TraesCS3B01G493400 chr3B 92.373 118 9 0 1440 1557 476339872 476339755 4.120000e-38 169.0
7 TraesCS3B01G493400 chr3B 86.577 149 16 1 325 469 738755306 738755158 6.900000e-36 161.0
8 TraesCS3B01G493400 chr3B 87.786 131 10 3 1657 1783 738918309 738918181 5.370000e-32 148.0
9 TraesCS3B01G493400 chr3D 91.800 1122 61 14 325 1427 555913181 555912072 0.000000e+00 1533.0
10 TraesCS3B01G493400 chr3D 89.869 839 50 6 1588 2412 555912029 555911212 0.000000e+00 1046.0
11 TraesCS3B01G493400 chr3D 82.276 615 46 13 773 1366 555801554 555800982 7.800000e-130 473.0
12 TraesCS3B01G493400 chr3D 88.925 307 23 4 2106 2412 555904174 555903879 3.790000e-98 368.0
13 TraesCS3B01G493400 chr3D 88.194 288 32 2 1869 2154 382115172 382114885 2.300000e-90 342.0
14 TraesCS3B01G493400 chr3D 91.813 171 13 1 602 771 555801887 555801717 1.110000e-58 237.0
15 TraesCS3B01G493400 chr3D 91.250 160 13 1 323 481 555798988 555798829 1.450000e-52 217.0
16 TraesCS3B01G493400 chr3D 92.754 69 4 1 1 69 48710745 48710812 5.490000e-17 99.0
17 TraesCS3B01G493400 chr3D 100.000 30 0 0 72 101 428551007 428550978 3.350000e-04 56.5
18 TraesCS3B01G493400 chr3A 89.868 1135 81 16 325 1434 692945908 692944783 0.000000e+00 1428.0
19 TraesCS3B01G493400 chr3A 84.146 820 76 29 583 1366 692724261 692723460 0.000000e+00 745.0
20 TraesCS3B01G493400 chr3A 86.105 439 36 7 1756 2193 692944192 692943778 1.320000e-122 449.0
21 TraesCS3B01G493400 chr3A 91.538 130 9 2 1588 1715 692944748 692944619 6.850000e-41 178.0
22 TraesCS3B01G493400 chr3A 93.151 73 4 1 1688 1759 692944425 692944353 3.280000e-19 106.0
23 TraesCS3B01G493400 chr1A 92.998 657 39 3 746 1400 510456968 510457619 0.000000e+00 952.0
24 TraesCS3B01G493400 chr6B 85.164 519 50 17 1904 2412 717912382 717911881 7.690000e-140 507.0
25 TraesCS3B01G493400 chr6B 87.410 278 28 4 2141 2412 623175636 623175360 1.800000e-81 313.0
26 TraesCS3B01G493400 chr7D 81.690 497 79 7 940 1431 175443544 175444033 1.040000e-108 403.0
27 TraesCS3B01G493400 chr7D 84.498 329 46 3 1824 2149 37874593 37874267 1.080000e-83 320.0
28 TraesCS3B01G493400 chr7D 83.988 331 50 3 1822 2149 159710171 159709841 5.010000e-82 315.0
29 TraesCS3B01G493400 chr7D 97.059 34 1 0 72 105 380185985 380185952 9.310000e-05 58.4
30 TraesCS3B01G493400 chr2D 80.943 488 83 7 940 1420 378166220 378166704 6.290000e-101 377.0
31 TraesCS3B01G493400 chr2D 86.905 336 37 4 605 938 378165796 378166126 1.050000e-98 370.0
32 TraesCS3B01G493400 chr2A 79.678 497 85 10 940 1430 512442286 512442772 6.380000e-91 344.0
33 TraesCS3B01G493400 chr2A 76.173 554 88 30 1888 2412 19612937 19612399 3.980000e-63 252.0
34 TraesCS3B01G493400 chr2A 85.973 221 30 1 103 323 313215824 313216043 4.010000e-58 235.0
35 TraesCS3B01G493400 chr1B 93.750 224 14 0 103 326 3570320 3570543 1.070000e-88 337.0
36 TraesCS3B01G493400 chr1B 97.059 34 1 0 72 105 647655191 647655224 9.310000e-05 58.4
37 TraesCS3B01G493400 chr1D 85.312 320 45 1 1832 2149 476459810 476459491 1.790000e-86 329.0
38 TraesCS3B01G493400 chr5D 84.639 319 45 3 1832 2149 528137318 528137003 5.010000e-82 315.0
39 TraesCS3B01G493400 chr5B 86.447 273 34 3 2140 2412 371306516 371306785 1.810000e-76 296.0
40 TraesCS3B01G493400 chr5B 92.373 118 9 0 1440 1557 124865923 124866040 4.120000e-38 169.0
41 TraesCS3B01G493400 chr5B 92.308 117 9 0 1441 1557 637285198 637285082 1.480000e-37 167.0
42 TraesCS3B01G493400 chr5A 86.022 279 31 4 2140 2412 653771278 653771554 2.350000e-75 292.0
43 TraesCS3B01G493400 chr4A 86.022 279 30 6 2140 2410 660217219 660217496 8.440000e-75 291.0
44 TraesCS3B01G493400 chr4A 97.059 34 1 0 72 105 738827629 738827662 9.310000e-05 58.4
45 TraesCS3B01G493400 chr7B 85.612 278 29 5 2140 2410 328178955 328178682 5.080000e-72 281.0
46 TraesCS3B01G493400 chr7B 91.870 123 10 0 1435 1557 625522275 625522153 3.190000e-39 172.0
47 TraesCS3B01G493400 chr7B 91.057 123 11 0 1435 1557 634370292 634370414 1.480000e-37 167.0
48 TraesCS3B01G493400 chr7B 90.625 64 5 1 1 64 674995300 674995362 1.540000e-12 84.2
49 TraesCS3B01G493400 chr7B 97.059 34 1 0 72 105 637207828 637207861 9.310000e-05 58.4
50 TraesCS3B01G493400 chr2B 91.954 174 13 1 2239 2412 745783553 745783381 2.400000e-60 243.0
51 TraesCS3B01G493400 chr2B 86.425 221 22 7 106 326 298571405 298571193 4.010000e-58 235.0
52 TraesCS3B01G493400 chr2B 92.373 118 9 0 1440 1557 518449038 518449155 4.120000e-38 169.0
53 TraesCS3B01G493400 chr2B 94.444 36 2 0 72 107 37746882 37746917 3.350000e-04 56.5
54 TraesCS3B01G493400 chr6A 82.955 264 40 3 1173 1431 14098682 14098945 1.440000e-57 233.0
55 TraesCS3B01G493400 chr7A 91.870 123 10 0 1435 1557 21209285 21209407 3.190000e-39 172.0
56 TraesCS3B01G493400 chr7A 88.550 131 13 2 1428 1557 706452892 706452763 8.930000e-35 158.0
57 TraesCS3B01G493400 chr4B 92.373 118 9 0 1440 1557 555335956 555336073 4.120000e-38 169.0
58 TraesCS3B01G493400 chr4B 97.059 34 1 0 72 105 3803231 3803198 9.310000e-05 58.4
59 TraesCS3B01G493400 chrUn 89.855 69 6 1 1 69 103226111 103226044 1.190000e-13 87.9
60 TraesCS3B01G493400 chrUn 100.000 29 0 0 72 100 147136995 147137023 1.000000e-03 54.7
61 TraesCS3B01G493400 chrUn 100.000 29 0 0 72 100 147288044 147288072 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G493400 chr3B 738909295 738911706 2411 True 4455.000000 4455 100.000000 1 2412 1 chr3B.!!$R4 2411
1 TraesCS3B01G493400 chr3B 738992378 738993237 859 True 1267.000000 1267 93.287000 568 1427 1 chr3B.!!$R6 859
2 TraesCS3B01G493400 chr3B 738755158 738758705 3547 True 328.666667 429 88.574667 325 1366 3 chr3B.!!$R7 1041
3 TraesCS3B01G493400 chr3D 555911212 555913181 1969 True 1289.500000 1533 90.834500 325 2412 2 chr3D.!!$R5 2087
4 TraesCS3B01G493400 chr3D 555798829 555801887 3058 True 309.000000 473 88.446333 323 1366 3 chr3D.!!$R4 1043
5 TraesCS3B01G493400 chr3A 692723460 692724261 801 True 745.000000 745 84.146000 583 1366 1 chr3A.!!$R1 783
6 TraesCS3B01G493400 chr3A 692943778 692945908 2130 True 540.250000 1428 90.165500 325 2193 4 chr3A.!!$R2 1868
7 TraesCS3B01G493400 chr1A 510456968 510457619 651 False 952.000000 952 92.998000 746 1400 1 chr1A.!!$F1 654
8 TraesCS3B01G493400 chr6B 717911881 717912382 501 True 507.000000 507 85.164000 1904 2412 1 chr6B.!!$R2 508
9 TraesCS3B01G493400 chr2D 378165796 378166704 908 False 373.500000 377 83.924000 605 1420 2 chr2D.!!$F1 815
10 TraesCS3B01G493400 chr2A 19612399 19612937 538 True 252.000000 252 76.173000 1888 2412 1 chr2A.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 246 0.038983 ACGCAAACCGGGCATAAAAC 60.039 50.0 6.32 0.0 42.52 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 3942 0.109919 CTCATCGTCGTCGTGGACAA 60.11 55.0 1.33 0.0 36.73 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.255126 GCACGAACTCGCCACTAA 57.745 55.556 0.00 0.00 44.43 2.24
28 29 2.524300 GCACGAACTCGCCACTAAA 58.476 52.632 0.00 0.00 44.43 1.85
29 30 0.438830 GCACGAACTCGCCACTAAAG 59.561 55.000 0.00 0.00 44.43 1.85
30 31 1.779569 CACGAACTCGCCACTAAAGT 58.220 50.000 0.00 0.00 44.43 2.66
31 32 1.455786 CACGAACTCGCCACTAAAGTG 59.544 52.381 3.02 3.02 44.43 3.16
32 33 0.438830 CGAACTCGCCACTAAAGTGC 59.561 55.000 4.53 0.32 44.34 4.40
33 34 0.796927 GAACTCGCCACTAAAGTGCC 59.203 55.000 4.53 0.00 44.34 5.01
34 35 0.107831 AACTCGCCACTAAAGTGCCA 59.892 50.000 4.53 0.00 44.34 4.92
35 36 0.324943 ACTCGCCACTAAAGTGCCAT 59.675 50.000 4.53 0.00 44.34 4.40
36 37 1.009829 CTCGCCACTAAAGTGCCATC 58.990 55.000 4.53 0.00 44.34 3.51
37 38 0.323302 TCGCCACTAAAGTGCCATCA 59.677 50.000 4.53 0.00 44.34 3.07
38 39 0.447801 CGCCACTAAAGTGCCATCAC 59.552 55.000 4.53 0.00 44.34 3.06
49 50 2.860293 CCATCACGTGGCACGAAC 59.140 61.111 42.65 4.67 46.05 3.95
50 51 2.677003 CCATCACGTGGCACGAACC 61.677 63.158 42.65 4.23 46.05 3.62
51 52 1.958715 CATCACGTGGCACGAACCA 60.959 57.895 42.65 23.69 46.05 3.67
52 53 1.667830 ATCACGTGGCACGAACCAG 60.668 57.895 42.65 25.35 46.05 4.00
53 54 3.345808 CACGTGGCACGAACCAGG 61.346 66.667 42.65 20.95 46.05 4.45
83 84 4.626081 GAGCCAGTGCCACCACGT 62.626 66.667 0.00 0.00 46.62 4.49
84 85 4.935495 AGCCAGTGCCACCACGTG 62.935 66.667 9.08 9.08 46.62 4.49
115 116 4.466133 CCACGTGGCACCACTAAA 57.534 55.556 24.02 0.00 44.16 1.85
116 117 1.946267 CCACGTGGCACCACTAAAC 59.054 57.895 24.02 0.00 44.16 2.01
117 118 0.534203 CCACGTGGCACCACTAAACT 60.534 55.000 24.02 0.00 44.16 2.66
118 119 1.305201 CACGTGGCACCACTAAACTT 58.695 50.000 17.34 0.00 44.16 2.66
119 120 2.485903 CACGTGGCACCACTAAACTTA 58.514 47.619 17.34 0.00 44.16 2.24
120 121 2.873472 CACGTGGCACCACTAAACTTAA 59.127 45.455 17.34 0.00 44.16 1.85
121 122 3.059188 CACGTGGCACCACTAAACTTAAG 60.059 47.826 17.34 0.00 44.16 1.85
122 123 3.135994 CGTGGCACCACTAAACTTAAGT 58.864 45.455 17.34 1.12 44.16 2.24
123 124 3.185797 CGTGGCACCACTAAACTTAAGTC 59.814 47.826 17.34 0.00 44.16 3.01
124 125 4.131596 GTGGCACCACTAAACTTAAGTCA 58.868 43.478 8.95 0.00 43.12 3.41
125 126 4.024302 GTGGCACCACTAAACTTAAGTCAC 60.024 45.833 8.95 4.91 43.12 3.67
126 127 3.501062 GGCACCACTAAACTTAAGTCACC 59.499 47.826 8.95 0.00 0.00 4.02
127 128 4.131596 GCACCACTAAACTTAAGTCACCA 58.868 43.478 8.95 0.00 0.00 4.17
128 129 4.760204 GCACCACTAAACTTAAGTCACCAT 59.240 41.667 8.95 0.00 0.00 3.55
129 130 5.334879 GCACCACTAAACTTAAGTCACCATG 60.335 44.000 8.95 4.47 0.00 3.66
130 131 5.763204 CACCACTAAACTTAAGTCACCATGT 59.237 40.000 8.95 0.55 0.00 3.21
131 132 6.932400 CACCACTAAACTTAAGTCACCATGTA 59.068 38.462 8.95 0.00 0.00 2.29
132 133 6.932960 ACCACTAAACTTAAGTCACCATGTAC 59.067 38.462 8.95 0.00 0.00 2.90
133 134 7.159372 CCACTAAACTTAAGTCACCATGTACT 58.841 38.462 8.95 0.00 0.00 2.73
134 135 7.117812 CCACTAAACTTAAGTCACCATGTACTG 59.882 40.741 8.95 0.00 0.00 2.74
135 136 5.941948 AAACTTAAGTCACCATGTACTGC 57.058 39.130 8.95 0.00 0.00 4.40
136 137 3.939066 ACTTAAGTCACCATGTACTGCC 58.061 45.455 1.12 0.00 0.00 4.85
137 138 2.665649 TAAGTCACCATGTACTGCCG 57.334 50.000 0.00 0.00 0.00 5.69
138 139 0.673644 AAGTCACCATGTACTGCCGC 60.674 55.000 0.00 0.00 0.00 6.53
139 140 2.106683 GTCACCATGTACTGCCGCC 61.107 63.158 0.00 0.00 0.00 6.13
140 141 2.824041 CACCATGTACTGCCGCCC 60.824 66.667 0.00 0.00 0.00 6.13
141 142 4.109675 ACCATGTACTGCCGCCCC 62.110 66.667 0.00 0.00 0.00 5.80
142 143 3.797353 CCATGTACTGCCGCCCCT 61.797 66.667 0.00 0.00 0.00 4.79
143 144 2.272146 CATGTACTGCCGCCCCTT 59.728 61.111 0.00 0.00 0.00 3.95
144 145 1.819632 CATGTACTGCCGCCCCTTC 60.820 63.158 0.00 0.00 0.00 3.46
145 146 1.995626 ATGTACTGCCGCCCCTTCT 60.996 57.895 0.00 0.00 0.00 2.85
146 147 1.562672 ATGTACTGCCGCCCCTTCTT 61.563 55.000 0.00 0.00 0.00 2.52
147 148 1.002502 GTACTGCCGCCCCTTCTTT 60.003 57.895 0.00 0.00 0.00 2.52
148 149 1.025113 GTACTGCCGCCCCTTCTTTC 61.025 60.000 0.00 0.00 0.00 2.62
149 150 1.485294 TACTGCCGCCCCTTCTTTCA 61.485 55.000 0.00 0.00 0.00 2.69
150 151 1.603455 CTGCCGCCCCTTCTTTCAA 60.603 57.895 0.00 0.00 0.00 2.69
151 152 0.967380 CTGCCGCCCCTTCTTTCAAT 60.967 55.000 0.00 0.00 0.00 2.57
152 153 1.250154 TGCCGCCCCTTCTTTCAATG 61.250 55.000 0.00 0.00 0.00 2.82
153 154 1.512694 CCGCCCCTTCTTTCAATGC 59.487 57.895 0.00 0.00 0.00 3.56
154 155 0.967380 CCGCCCCTTCTTTCAATGCT 60.967 55.000 0.00 0.00 0.00 3.79
155 156 0.890683 CGCCCCTTCTTTCAATGCTT 59.109 50.000 0.00 0.00 0.00 3.91
156 157 2.091541 CGCCCCTTCTTTCAATGCTTA 58.908 47.619 0.00 0.00 0.00 3.09
157 158 2.491693 CGCCCCTTCTTTCAATGCTTAA 59.508 45.455 0.00 0.00 0.00 1.85
158 159 3.428045 CGCCCCTTCTTTCAATGCTTAAG 60.428 47.826 0.00 0.00 0.00 1.85
159 160 3.511540 GCCCCTTCTTTCAATGCTTAAGT 59.488 43.478 4.02 0.00 0.00 2.24
160 161 4.380973 GCCCCTTCTTTCAATGCTTAAGTC 60.381 45.833 4.02 0.00 0.00 3.01
161 162 4.766891 CCCCTTCTTTCAATGCTTAAGTCA 59.233 41.667 4.02 3.28 0.00 3.41
162 163 5.335976 CCCCTTCTTTCAATGCTTAAGTCAC 60.336 44.000 4.02 0.00 0.00 3.67
163 164 5.241506 CCCTTCTTTCAATGCTTAAGTCACA 59.758 40.000 4.02 0.00 0.00 3.58
164 165 6.239008 CCCTTCTTTCAATGCTTAAGTCACAA 60.239 38.462 4.02 0.00 0.00 3.33
165 166 7.373493 CCTTCTTTCAATGCTTAAGTCACAAT 58.627 34.615 4.02 0.00 0.00 2.71
166 167 7.869429 CCTTCTTTCAATGCTTAAGTCACAATT 59.131 33.333 4.02 0.00 0.00 2.32
167 168 8.578308 TTCTTTCAATGCTTAAGTCACAATTG 57.422 30.769 3.24 3.24 0.00 2.32
168 169 6.642131 TCTTTCAATGCTTAAGTCACAATTGC 59.358 34.615 5.05 0.00 0.00 3.56
169 170 4.475028 TCAATGCTTAAGTCACAATTGCG 58.525 39.130 5.05 0.00 0.00 4.85
170 171 4.215185 TCAATGCTTAAGTCACAATTGCGA 59.785 37.500 5.05 0.00 0.00 5.10
171 172 4.764679 ATGCTTAAGTCACAATTGCGAA 57.235 36.364 5.05 0.00 0.00 4.70
172 173 3.884169 TGCTTAAGTCACAATTGCGAAC 58.116 40.909 5.05 1.31 0.00 3.95
173 174 3.313803 TGCTTAAGTCACAATTGCGAACA 59.686 39.130 5.05 0.00 0.00 3.18
174 175 4.201960 TGCTTAAGTCACAATTGCGAACAA 60.202 37.500 5.05 0.00 40.87 2.83
175 176 4.379793 GCTTAAGTCACAATTGCGAACAAG 59.620 41.667 5.05 6.92 39.69 3.16
176 177 5.743026 TTAAGTCACAATTGCGAACAAGA 57.257 34.783 5.05 0.00 39.69 3.02
177 178 4.836125 AAGTCACAATTGCGAACAAGAT 57.164 36.364 5.05 0.00 39.69 2.40
178 179 4.836125 AGTCACAATTGCGAACAAGATT 57.164 36.364 5.05 0.00 39.69 2.40
179 180 5.186996 AGTCACAATTGCGAACAAGATTT 57.813 34.783 5.05 0.00 39.69 2.17
180 181 5.215160 AGTCACAATTGCGAACAAGATTTC 58.785 37.500 5.05 0.00 39.69 2.17
181 182 4.382754 GTCACAATTGCGAACAAGATTTCC 59.617 41.667 5.05 0.00 39.69 3.13
182 183 4.037327 TCACAATTGCGAACAAGATTTCCA 59.963 37.500 5.05 0.00 39.69 3.53
183 184 4.925054 CACAATTGCGAACAAGATTTCCAT 59.075 37.500 5.05 0.00 39.69 3.41
184 185 4.925054 ACAATTGCGAACAAGATTTCCATG 59.075 37.500 5.05 0.00 39.69 3.66
185 186 2.634982 TGCGAACAAGATTTCCATGC 57.365 45.000 0.00 0.00 0.00 4.06
186 187 2.161855 TGCGAACAAGATTTCCATGCT 58.838 42.857 0.00 0.00 0.00 3.79
187 188 2.557924 TGCGAACAAGATTTCCATGCTT 59.442 40.909 0.00 0.00 0.00 3.91
188 189 3.174375 GCGAACAAGATTTCCATGCTTC 58.826 45.455 0.00 0.00 0.00 3.86
189 190 3.419915 CGAACAAGATTTCCATGCTTCG 58.580 45.455 0.00 0.00 0.00 3.79
190 191 3.125146 CGAACAAGATTTCCATGCTTCGA 59.875 43.478 0.00 0.00 33.54 3.71
191 192 4.406943 GAACAAGATTTCCATGCTTCGAC 58.593 43.478 0.00 0.00 0.00 4.20
192 193 3.411446 ACAAGATTTCCATGCTTCGACA 58.589 40.909 0.00 0.00 0.00 4.35
193 194 3.438087 ACAAGATTTCCATGCTTCGACAG 59.562 43.478 0.00 0.00 0.00 3.51
194 195 3.340814 AGATTTCCATGCTTCGACAGT 57.659 42.857 0.00 0.00 0.00 3.55
195 196 3.265791 AGATTTCCATGCTTCGACAGTC 58.734 45.455 0.00 0.00 0.00 3.51
196 197 2.542020 TTTCCATGCTTCGACAGTCA 57.458 45.000 0.41 0.00 0.00 3.41
197 198 2.768253 TTCCATGCTTCGACAGTCAT 57.232 45.000 0.41 0.00 0.00 3.06
198 199 3.885724 TTCCATGCTTCGACAGTCATA 57.114 42.857 0.41 0.00 0.00 2.15
199 200 3.165058 TCCATGCTTCGACAGTCATAC 57.835 47.619 0.41 0.00 0.00 2.39
200 201 2.495669 TCCATGCTTCGACAGTCATACA 59.504 45.455 0.41 0.00 0.00 2.29
201 202 2.604914 CCATGCTTCGACAGTCATACAC 59.395 50.000 0.41 0.00 0.00 2.90
202 203 1.977188 TGCTTCGACAGTCATACACG 58.023 50.000 0.41 0.00 0.00 4.49
203 204 1.268625 TGCTTCGACAGTCATACACGT 59.731 47.619 0.41 0.00 0.00 4.49
204 205 1.912110 GCTTCGACAGTCATACACGTC 59.088 52.381 0.41 0.00 0.00 4.34
205 206 2.516923 CTTCGACAGTCATACACGTCC 58.483 52.381 0.41 0.00 0.00 4.79
206 207 1.525941 TCGACAGTCATACACGTCCA 58.474 50.000 0.41 0.00 0.00 4.02
207 208 1.198408 TCGACAGTCATACACGTCCAC 59.802 52.381 0.41 0.00 0.00 4.02
208 209 1.068816 CGACAGTCATACACGTCCACA 60.069 52.381 0.41 0.00 0.00 4.17
209 210 2.606065 CGACAGTCATACACGTCCACAA 60.606 50.000 0.41 0.00 0.00 3.33
210 211 2.729882 GACAGTCATACACGTCCACAAC 59.270 50.000 0.00 0.00 0.00 3.32
211 212 2.066262 CAGTCATACACGTCCACAACC 58.934 52.381 0.00 0.00 0.00 3.77
212 213 1.001633 AGTCATACACGTCCACAACCC 59.998 52.381 0.00 0.00 0.00 4.11
213 214 1.001633 GTCATACACGTCCACAACCCT 59.998 52.381 0.00 0.00 0.00 4.34
214 215 2.231964 GTCATACACGTCCACAACCCTA 59.768 50.000 0.00 0.00 0.00 3.53
215 216 2.898612 TCATACACGTCCACAACCCTAA 59.101 45.455 0.00 0.00 0.00 2.69
216 217 2.818130 TACACGTCCACAACCCTAAC 57.182 50.000 0.00 0.00 0.00 2.34
217 218 0.249573 ACACGTCCACAACCCTAACG 60.250 55.000 0.00 0.00 39.16 3.18
218 219 0.249573 CACGTCCACAACCCTAACGT 60.250 55.000 0.00 0.00 46.44 3.99
219 220 0.249573 ACGTCCACAACCCTAACGTG 60.250 55.000 0.00 0.00 44.10 4.49
227 228 4.218722 CCCTAACGTGGGCATCAC 57.781 61.111 0.00 0.00 40.84 3.06
234 235 2.258286 GTGGGCATCACGCAAACC 59.742 61.111 0.00 0.00 43.74 3.27
235 236 3.361158 TGGGCATCACGCAAACCG 61.361 61.111 0.00 0.00 45.17 4.44
236 237 4.114997 GGGCATCACGCAAACCGG 62.115 66.667 0.00 0.00 45.17 5.28
237 238 4.114997 GGCATCACGCAAACCGGG 62.115 66.667 6.32 0.00 45.17 5.73
238 239 4.776647 GCATCACGCAAACCGGGC 62.777 66.667 6.32 0.00 41.10 6.13
239 240 3.361158 CATCACGCAAACCGGGCA 61.361 61.111 6.32 0.00 41.10 5.36
240 241 2.361104 ATCACGCAAACCGGGCAT 60.361 55.556 6.32 0.00 41.10 4.40
241 242 1.078072 ATCACGCAAACCGGGCATA 60.078 52.632 6.32 0.00 41.10 3.14
242 243 0.678366 ATCACGCAAACCGGGCATAA 60.678 50.000 6.32 0.00 41.10 1.90
243 244 0.889638 TCACGCAAACCGGGCATAAA 60.890 50.000 6.32 0.00 41.10 1.40
244 245 0.039074 CACGCAAACCGGGCATAAAA 60.039 50.000 6.32 0.00 42.52 1.52
245 246 0.038983 ACGCAAACCGGGCATAAAAC 60.039 50.000 6.32 0.00 42.52 2.43
246 247 1.068287 CGCAAACCGGGCATAAAACG 61.068 55.000 6.32 0.00 0.00 3.60
247 248 0.038983 GCAAACCGGGCATAAAACGT 60.039 50.000 6.32 0.00 0.00 3.99
248 249 1.199558 GCAAACCGGGCATAAAACGTA 59.800 47.619 6.32 0.00 0.00 3.57
249 250 2.159352 GCAAACCGGGCATAAAACGTAT 60.159 45.455 6.32 0.00 0.00 3.06
250 251 3.065095 GCAAACCGGGCATAAAACGTATA 59.935 43.478 6.32 0.00 0.00 1.47
251 252 4.261280 GCAAACCGGGCATAAAACGTATAT 60.261 41.667 6.32 0.00 0.00 0.86
252 253 5.209240 CAAACCGGGCATAAAACGTATATG 58.791 41.667 6.32 14.01 34.55 1.78
253 254 4.339872 ACCGGGCATAAAACGTATATGA 57.660 40.909 19.83 0.00 33.49 2.15
254 255 4.706035 ACCGGGCATAAAACGTATATGAA 58.294 39.130 19.83 0.00 33.49 2.57
255 256 4.753107 ACCGGGCATAAAACGTATATGAAG 59.247 41.667 19.83 11.79 33.49 3.02
256 257 4.992319 CCGGGCATAAAACGTATATGAAGA 59.008 41.667 19.83 0.00 33.49 2.87
257 258 5.120208 CCGGGCATAAAACGTATATGAAGAG 59.880 44.000 19.83 10.31 33.49 2.85
258 259 5.389516 CGGGCATAAAACGTATATGAAGAGC 60.390 44.000 19.83 8.10 33.49 4.09
259 260 5.468746 GGGCATAAAACGTATATGAAGAGCA 59.531 40.000 19.83 0.00 33.49 4.26
260 261 6.347725 GGGCATAAAACGTATATGAAGAGCAG 60.348 42.308 19.83 0.00 33.49 4.24
261 262 6.347725 GGCATAAAACGTATATGAAGAGCAGG 60.348 42.308 19.83 0.00 33.49 4.85
262 263 6.593978 CATAAAACGTATATGAAGAGCAGGC 58.406 40.000 13.36 0.00 33.49 4.85
263 264 2.821991 ACGTATATGAAGAGCAGGCC 57.178 50.000 0.00 0.00 0.00 5.19
264 265 2.039418 ACGTATATGAAGAGCAGGCCA 58.961 47.619 5.01 0.00 0.00 5.36
265 266 2.036475 ACGTATATGAAGAGCAGGCCAG 59.964 50.000 5.01 0.00 0.00 4.85
266 267 2.611473 CGTATATGAAGAGCAGGCCAGG 60.611 54.545 5.01 0.00 0.00 4.45
267 268 1.811778 ATATGAAGAGCAGGCCAGGA 58.188 50.000 5.01 0.00 0.00 3.86
268 269 0.833287 TATGAAGAGCAGGCCAGGAC 59.167 55.000 5.01 0.00 0.00 3.85
269 270 1.203441 ATGAAGAGCAGGCCAGGACA 61.203 55.000 5.01 0.00 0.00 4.02
270 271 1.376553 GAAGAGCAGGCCAGGACAC 60.377 63.158 5.01 0.00 0.00 3.67
271 272 3.245668 AAGAGCAGGCCAGGACACG 62.246 63.158 5.01 0.00 0.00 4.49
289 290 2.879907 CCCGCTGGCATCAACAAG 59.120 61.111 0.00 0.00 0.00 3.16
290 291 2.703798 CCCGCTGGCATCAACAAGG 61.704 63.158 0.00 0.00 0.00 3.61
291 292 1.973281 CCGCTGGCATCAACAAGGT 60.973 57.895 0.00 0.00 0.00 3.50
292 293 1.503542 CGCTGGCATCAACAAGGTC 59.496 57.895 0.00 0.00 0.00 3.85
293 294 1.236616 CGCTGGCATCAACAAGGTCA 61.237 55.000 0.00 0.00 0.00 4.02
294 295 0.242017 GCTGGCATCAACAAGGTCAC 59.758 55.000 0.00 0.00 0.00 3.67
295 296 0.883833 CTGGCATCAACAAGGTCACC 59.116 55.000 0.00 0.00 0.00 4.02
296 297 0.888736 TGGCATCAACAAGGTCACCG 60.889 55.000 0.00 0.00 0.00 4.94
297 298 0.605319 GGCATCAACAAGGTCACCGA 60.605 55.000 0.00 0.00 0.00 4.69
298 299 1.453155 GCATCAACAAGGTCACCGAT 58.547 50.000 0.00 0.00 0.00 4.18
299 300 1.131126 GCATCAACAAGGTCACCGATG 59.869 52.381 4.67 4.67 34.69 3.84
300 301 1.131126 CATCAACAAGGTCACCGATGC 59.869 52.381 2.79 0.00 0.00 3.91
301 302 0.605319 TCAACAAGGTCACCGATGCC 60.605 55.000 2.79 0.00 0.00 4.40
302 303 1.671054 AACAAGGTCACCGATGCCG 60.671 57.895 2.79 0.00 0.00 5.69
303 304 3.499737 CAAGGTCACCGATGCCGC 61.500 66.667 0.00 0.00 0.00 6.53
304 305 4.778143 AAGGTCACCGATGCCGCC 62.778 66.667 0.00 0.00 0.00 6.13
307 308 3.499737 GTCACCGATGCCGCCAAG 61.500 66.667 0.00 0.00 0.00 3.61
308 309 3.700970 TCACCGATGCCGCCAAGA 61.701 61.111 0.00 0.00 0.00 3.02
309 310 3.197790 CACCGATGCCGCCAAGAG 61.198 66.667 0.00 0.00 0.00 2.85
313 314 4.802051 GATGCCGCCAAGAGCCCA 62.802 66.667 0.00 0.00 38.78 5.36
314 315 4.133373 ATGCCGCCAAGAGCCCAT 62.133 61.111 0.00 0.00 38.78 4.00
318 319 3.063704 CGCCAAGAGCCCATGCAA 61.064 61.111 0.00 0.00 41.13 4.08
319 320 2.890371 GCCAAGAGCCCATGCAAG 59.110 61.111 0.00 0.00 41.13 4.01
320 321 2.718073 GCCAAGAGCCCATGCAAGG 61.718 63.158 0.00 0.00 41.13 3.61
328 329 2.037687 CCATGCAAGGGGCCAAGA 59.962 61.111 4.39 0.00 43.89 3.02
339 340 3.903467 AGGGGCCAAGAATCTAATTGAC 58.097 45.455 4.39 0.00 0.00 3.18
340 341 2.959030 GGGGCCAAGAATCTAATTGACC 59.041 50.000 4.39 0.00 0.00 4.02
429 430 2.669300 TTGCAGCACACACAAAATGT 57.331 40.000 0.00 0.00 44.81 2.71
672 690 3.580022 AGATGAATGCTCGGGATACATCA 59.420 43.478 0.00 0.00 36.26 3.07
689 707 8.345565 GGATACATCATACAAAGTTTGACCATC 58.654 37.037 22.23 11.15 0.00 3.51
922 1108 1.668826 TTGCACCTCTGAACCCCTAT 58.331 50.000 0.00 0.00 0.00 2.57
998 2112 3.005791 GGAGCAACCAAACAAAGCATAGT 59.994 43.478 0.00 0.00 38.79 2.12
1143 2259 6.309737 ACACTCGTACGTGATAATTTCTTTCC 59.690 38.462 22.86 0.00 38.27 3.13
1164 2285 5.003804 TCCTTTTTCCATTCTTTCTCTCGG 58.996 41.667 0.00 0.00 0.00 4.63
1366 2504 0.857287 GCTGCTGCAAAAAGAACTGC 59.143 50.000 11.11 0.00 39.41 4.40
1427 2571 9.081204 TGTGCGGATAATAGTCTACCTTATTAA 57.919 33.333 0.00 0.00 0.00 1.40
1428 2572 9.351570 GTGCGGATAATAGTCTACCTTATTAAC 57.648 37.037 0.00 0.00 0.00 2.01
1429 2573 9.305555 TGCGGATAATAGTCTACCTTATTAACT 57.694 33.333 0.00 0.00 0.00 2.24
1456 2600 9.574516 ACATCCTTTGTTCTAAAATACTTGACT 57.425 29.630 0.00 0.00 33.74 3.41
1548 2692 5.560966 AGAAGGCATGTATTGTAAAACGG 57.439 39.130 0.00 0.00 0.00 4.44
1549 2693 5.250200 AGAAGGCATGTATTGTAAAACGGA 58.750 37.500 0.00 0.00 0.00 4.69
1550 2694 5.354234 AGAAGGCATGTATTGTAAAACGGAG 59.646 40.000 0.00 0.00 0.00 4.63
1551 2695 3.945285 AGGCATGTATTGTAAAACGGAGG 59.055 43.478 0.00 0.00 0.00 4.30
1552 2696 3.066203 GGCATGTATTGTAAAACGGAGGG 59.934 47.826 0.00 0.00 0.00 4.30
1553 2697 3.942748 GCATGTATTGTAAAACGGAGGGA 59.057 43.478 0.00 0.00 0.00 4.20
1554 2698 4.035208 GCATGTATTGTAAAACGGAGGGAG 59.965 45.833 0.00 0.00 0.00 4.30
1555 2699 4.895668 TGTATTGTAAAACGGAGGGAGT 57.104 40.909 0.00 0.00 0.00 3.85
1556 2700 5.999205 TGTATTGTAAAACGGAGGGAGTA 57.001 39.130 0.00 0.00 0.00 2.59
1557 2701 6.549433 TGTATTGTAAAACGGAGGGAGTAT 57.451 37.500 0.00 0.00 0.00 2.12
1558 2702 6.342906 TGTATTGTAAAACGGAGGGAGTATG 58.657 40.000 0.00 0.00 0.00 2.39
1565 2709 3.596940 ACGGAGGGAGTATGAGTGTAT 57.403 47.619 0.00 0.00 0.00 2.29
1578 2722 7.831753 AGTATGAGTGTATATGCCATGTACTC 58.168 38.462 12.07 8.85 35.02 2.59
1581 2725 4.871513 AGTGTATATGCCATGTACTCGTG 58.128 43.478 12.07 0.00 0.00 4.35
1594 2753 4.343231 TGTACTCGTGGATAAGGTTGGTA 58.657 43.478 0.00 0.00 0.00 3.25
1698 3083 4.568760 GCTAGCTATTTCTCAGTGACCAAC 59.431 45.833 7.70 0.00 0.00 3.77
1727 3116 1.613437 ACCAAGTTGCATACACAAGGC 59.387 47.619 0.00 0.00 0.00 4.35
1786 3506 2.239400 GCACCCCAATAATTCTAGCCC 58.761 52.381 0.00 0.00 0.00 5.19
1864 3752 1.094785 CTTGGTAAATCCGGCCACTG 58.905 55.000 2.24 0.00 39.52 3.66
1876 3764 3.047877 CCACTGAAACGCCCGGTC 61.048 66.667 0.00 0.00 0.00 4.79
1974 3876 3.872511 TCATACAAGGCATGCAAAAGG 57.127 42.857 21.36 6.28 0.00 3.11
1979 3881 2.633967 ACAAGGCATGCAAAAGGAATCA 59.366 40.909 21.36 0.00 0.00 2.57
2017 3932 4.408596 ACGTACTACCCTAGCTACTCTTCT 59.591 45.833 0.00 0.00 0.00 2.85
2027 3942 1.738908 GCTACTCTTCTTCGTCGGAGT 59.261 52.381 0.00 3.54 41.22 3.85
2045 3991 0.386352 GTTGTCCACGACGACGATGA 60.386 55.000 15.32 6.84 37.24 2.92
2136 4082 1.735376 GCGAACATCTCCGCCTCCTA 61.735 60.000 0.00 0.00 45.06 2.94
2149 4118 3.047718 CTCCTACGCGGCGTCTTGA 62.048 63.158 32.91 23.17 41.54 3.02
2189 4159 0.552848 GGAGGGAATTGAGGATGGCA 59.447 55.000 0.00 0.00 0.00 4.92
2239 4227 3.075641 GTCCCCCACGTCCTCCTC 61.076 72.222 0.00 0.00 0.00 3.71
2260 4841 0.556380 TCCTCCTCCTCCTCCTCCTT 60.556 60.000 0.00 0.00 0.00 3.36
2274 5365 1.199615 CTCCTTCTCCAACTCCTCCC 58.800 60.000 0.00 0.00 0.00 4.30
2357 5554 2.498726 CTCAAGGAGCTCGAGCCC 59.501 66.667 32.94 29.94 43.38 5.19
2359 5556 3.764466 CAAGGAGCTCGAGCCCGT 61.764 66.667 32.94 26.22 43.38 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.438830 CTTTAGTGGCGAGTTCGTGC 59.561 55.000 3.27 0.00 42.22 5.34
11 12 1.455786 CACTTTAGTGGCGAGTTCGTG 59.544 52.381 3.27 0.00 42.10 4.35
12 13 1.779569 CACTTTAGTGGCGAGTTCGT 58.220 50.000 3.27 0.00 42.10 3.85
13 14 0.438830 GCACTTTAGTGGCGAGTTCG 59.561 55.000 11.55 0.00 45.72 3.95
21 22 1.464608 CACGTGATGGCACTTTAGTGG 59.535 52.381 10.90 0.00 45.72 4.00
23 24 1.808411 CCACGTGATGGCACTTTAGT 58.192 50.000 19.30 0.00 43.24 2.24
33 34 1.900585 CTGGTTCGTGCCACGTGATG 61.901 60.000 19.30 3.31 43.14 3.07
34 35 1.667830 CTGGTTCGTGCCACGTGAT 60.668 57.895 19.30 0.00 43.14 3.06
35 36 2.279851 CTGGTTCGTGCCACGTGA 60.280 61.111 19.30 4.53 43.14 4.35
36 37 3.345808 CCTGGTTCGTGCCACGTG 61.346 66.667 17.83 9.08 43.14 4.49
37 38 4.619227 CCCTGGTTCGTGCCACGT 62.619 66.667 17.83 0.00 43.14 4.49
66 67 4.626081 ACGTGGTGGCACTGGCTC 62.626 66.667 18.45 0.25 40.87 4.70
67 68 4.935495 CACGTGGTGGCACTGGCT 62.935 66.667 18.45 0.00 40.87 4.75
102 103 4.024302 GTGACTTAAGTTTAGTGGTGCCAC 60.024 45.833 10.02 13.13 46.50 5.01
103 104 4.131596 GTGACTTAAGTTTAGTGGTGCCA 58.868 43.478 10.02 0.00 0.00 4.92
104 105 3.501062 GGTGACTTAAGTTTAGTGGTGCC 59.499 47.826 10.02 0.00 0.00 5.01
105 106 4.131596 TGGTGACTTAAGTTTAGTGGTGC 58.868 43.478 10.02 0.00 0.00 5.01
106 107 5.763204 ACATGGTGACTTAAGTTTAGTGGTG 59.237 40.000 10.02 6.26 0.00 4.17
107 108 5.937111 ACATGGTGACTTAAGTTTAGTGGT 58.063 37.500 10.02 2.63 0.00 4.16
108 109 7.117812 CAGTACATGGTGACTTAAGTTTAGTGG 59.882 40.741 10.02 2.01 0.00 4.00
109 110 7.360101 GCAGTACATGGTGACTTAAGTTTAGTG 60.360 40.741 10.02 8.20 0.00 2.74
110 111 6.649557 GCAGTACATGGTGACTTAAGTTTAGT 59.350 38.462 10.02 6.04 0.00 2.24
111 112 6.092259 GGCAGTACATGGTGACTTAAGTTTAG 59.908 42.308 10.02 0.34 0.00 1.85
112 113 5.935789 GGCAGTACATGGTGACTTAAGTTTA 59.064 40.000 10.02 0.00 0.00 2.01
113 114 4.760204 GGCAGTACATGGTGACTTAAGTTT 59.240 41.667 10.02 0.00 0.00 2.66
114 115 4.324267 GGCAGTACATGGTGACTTAAGTT 58.676 43.478 10.02 0.00 0.00 2.66
115 116 3.616560 CGGCAGTACATGGTGACTTAAGT 60.617 47.826 8.13 8.13 0.00 2.24
116 117 2.930040 CGGCAGTACATGGTGACTTAAG 59.070 50.000 0.00 0.00 0.00 1.85
117 118 2.933492 GCGGCAGTACATGGTGACTTAA 60.933 50.000 0.00 0.00 0.00 1.85
118 119 1.404986 GCGGCAGTACATGGTGACTTA 60.405 52.381 0.00 0.00 0.00 2.24
119 120 0.673644 GCGGCAGTACATGGTGACTT 60.674 55.000 0.00 0.00 0.00 3.01
120 121 1.079127 GCGGCAGTACATGGTGACT 60.079 57.895 0.00 0.00 0.00 3.41
121 122 2.106683 GGCGGCAGTACATGGTGAC 61.107 63.158 3.07 0.00 0.00 3.67
122 123 2.267642 GGCGGCAGTACATGGTGA 59.732 61.111 3.07 0.00 0.00 4.02
123 124 2.824041 GGGCGGCAGTACATGGTG 60.824 66.667 12.47 0.00 0.00 4.17
124 125 4.109675 GGGGCGGCAGTACATGGT 62.110 66.667 12.47 0.00 0.00 3.55
125 126 3.344137 AAGGGGCGGCAGTACATGG 62.344 63.158 12.47 0.00 0.00 3.66
126 127 1.819632 GAAGGGGCGGCAGTACATG 60.820 63.158 12.47 0.00 0.00 3.21
127 128 1.562672 AAGAAGGGGCGGCAGTACAT 61.563 55.000 12.47 0.00 0.00 2.29
128 129 1.774894 AAAGAAGGGGCGGCAGTACA 61.775 55.000 12.47 0.00 0.00 2.90
129 130 1.002502 AAAGAAGGGGCGGCAGTAC 60.003 57.895 12.47 0.00 0.00 2.73
130 131 1.298667 GAAAGAAGGGGCGGCAGTA 59.701 57.895 12.47 0.00 0.00 2.74
131 132 2.034221 GAAAGAAGGGGCGGCAGT 59.966 61.111 12.47 0.00 0.00 4.40
132 133 0.967380 ATTGAAAGAAGGGGCGGCAG 60.967 55.000 12.47 0.00 0.00 4.85
133 134 1.076549 ATTGAAAGAAGGGGCGGCA 59.923 52.632 12.47 0.00 0.00 5.69
134 135 1.512694 CATTGAAAGAAGGGGCGGC 59.487 57.895 0.00 0.00 0.00 6.53
135 136 0.967380 AGCATTGAAAGAAGGGGCGG 60.967 55.000 0.00 0.00 0.00 6.13
136 137 0.890683 AAGCATTGAAAGAAGGGGCG 59.109 50.000 0.00 0.00 0.00 6.13
137 138 3.511540 ACTTAAGCATTGAAAGAAGGGGC 59.488 43.478 1.29 0.00 0.00 5.80
138 139 4.766891 TGACTTAAGCATTGAAAGAAGGGG 59.233 41.667 1.29 0.00 0.00 4.79
139 140 5.241506 TGTGACTTAAGCATTGAAAGAAGGG 59.758 40.000 1.29 0.00 0.00 3.95
140 141 6.317789 TGTGACTTAAGCATTGAAAGAAGG 57.682 37.500 1.29 0.00 0.00 3.46
141 142 8.697067 CAATTGTGACTTAAGCATTGAAAGAAG 58.303 33.333 1.29 0.00 0.00 2.85
142 143 7.169645 GCAATTGTGACTTAAGCATTGAAAGAA 59.830 33.333 7.40 0.00 0.00 2.52
143 144 6.642131 GCAATTGTGACTTAAGCATTGAAAGA 59.358 34.615 7.40 0.00 0.00 2.52
144 145 6.399249 CGCAATTGTGACTTAAGCATTGAAAG 60.399 38.462 13.88 0.00 0.00 2.62
145 146 5.401972 CGCAATTGTGACTTAAGCATTGAAA 59.598 36.000 13.88 0.00 0.00 2.69
146 147 4.916831 CGCAATTGTGACTTAAGCATTGAA 59.083 37.500 13.88 0.00 0.00 2.69
147 148 4.215185 TCGCAATTGTGACTTAAGCATTGA 59.785 37.500 17.57 0.00 0.00 2.57
148 149 4.475028 TCGCAATTGTGACTTAAGCATTG 58.525 39.130 17.57 5.22 0.00 2.82
149 150 4.764679 TCGCAATTGTGACTTAAGCATT 57.235 36.364 17.57 0.00 0.00 3.56
150 151 4.023279 TGTTCGCAATTGTGACTTAAGCAT 60.023 37.500 20.95 0.00 33.83 3.79
151 152 3.313803 TGTTCGCAATTGTGACTTAAGCA 59.686 39.130 20.95 5.71 33.83 3.91
152 153 3.884169 TGTTCGCAATTGTGACTTAAGC 58.116 40.909 20.95 3.11 33.83 3.09
153 154 5.747565 TCTTGTTCGCAATTGTGACTTAAG 58.252 37.500 20.95 21.28 36.39 1.85
154 155 5.743026 TCTTGTTCGCAATTGTGACTTAA 57.257 34.783 20.95 14.28 36.39 1.85
155 156 5.940192 ATCTTGTTCGCAATTGTGACTTA 57.060 34.783 20.95 4.48 36.39 2.24
156 157 4.836125 ATCTTGTTCGCAATTGTGACTT 57.164 36.364 20.95 0.71 36.39 3.01
157 158 4.836125 AATCTTGTTCGCAATTGTGACT 57.164 36.364 20.95 0.21 36.39 3.41
158 159 4.382754 GGAAATCTTGTTCGCAATTGTGAC 59.617 41.667 20.95 15.66 36.39 3.67
159 160 4.037327 TGGAAATCTTGTTCGCAATTGTGA 59.963 37.500 17.57 17.57 36.39 3.58
160 161 4.297510 TGGAAATCTTGTTCGCAATTGTG 58.702 39.130 12.92 12.92 36.39 3.33
161 162 4.582701 TGGAAATCTTGTTCGCAATTGT 57.417 36.364 7.40 0.00 36.39 2.71
162 163 4.201647 GCATGGAAATCTTGTTCGCAATTG 60.202 41.667 0.00 0.00 36.39 2.32
163 164 3.928375 GCATGGAAATCTTGTTCGCAATT 59.072 39.130 0.00 0.00 36.39 2.32
164 165 3.194116 AGCATGGAAATCTTGTTCGCAAT 59.806 39.130 0.00 0.00 36.39 3.56
165 166 2.557924 AGCATGGAAATCTTGTTCGCAA 59.442 40.909 0.00 0.00 35.53 4.85
166 167 2.161855 AGCATGGAAATCTTGTTCGCA 58.838 42.857 0.00 0.00 0.00 5.10
167 168 2.927553 AGCATGGAAATCTTGTTCGC 57.072 45.000 0.00 0.00 0.00 4.70
168 169 3.125146 TCGAAGCATGGAAATCTTGTTCG 59.875 43.478 0.00 0.00 36.56 3.95
169 170 4.083324 TGTCGAAGCATGGAAATCTTGTTC 60.083 41.667 0.00 0.00 0.00 3.18
170 171 3.820467 TGTCGAAGCATGGAAATCTTGTT 59.180 39.130 0.00 0.00 0.00 2.83
171 172 3.411446 TGTCGAAGCATGGAAATCTTGT 58.589 40.909 0.00 0.00 0.00 3.16
172 173 3.438087 ACTGTCGAAGCATGGAAATCTTG 59.562 43.478 0.00 0.00 0.00 3.02
173 174 3.679389 ACTGTCGAAGCATGGAAATCTT 58.321 40.909 0.00 0.00 0.00 2.40
174 175 3.265791 GACTGTCGAAGCATGGAAATCT 58.734 45.455 0.00 0.00 0.00 2.40
175 176 3.002791 TGACTGTCGAAGCATGGAAATC 58.997 45.455 2.98 0.00 0.00 2.17
176 177 3.057969 TGACTGTCGAAGCATGGAAAT 57.942 42.857 2.98 0.00 0.00 2.17
177 178 2.542020 TGACTGTCGAAGCATGGAAA 57.458 45.000 2.98 0.00 0.00 3.13
178 179 2.768253 ATGACTGTCGAAGCATGGAA 57.232 45.000 2.98 0.00 0.00 3.53
179 180 2.495669 TGTATGACTGTCGAAGCATGGA 59.504 45.455 2.98 0.00 0.00 3.41
180 181 2.604914 GTGTATGACTGTCGAAGCATGG 59.395 50.000 2.98 0.00 0.00 3.66
181 182 2.279921 CGTGTATGACTGTCGAAGCATG 59.720 50.000 2.98 0.00 0.00 4.06
182 183 2.094700 ACGTGTATGACTGTCGAAGCAT 60.095 45.455 2.98 0.00 0.00 3.79
183 184 1.268625 ACGTGTATGACTGTCGAAGCA 59.731 47.619 2.98 0.00 0.00 3.91
184 185 1.912110 GACGTGTATGACTGTCGAAGC 59.088 52.381 0.00 0.00 0.00 3.86
185 186 2.095415 TGGACGTGTATGACTGTCGAAG 60.095 50.000 0.00 0.00 32.30 3.79
186 187 1.881324 TGGACGTGTATGACTGTCGAA 59.119 47.619 0.00 0.00 32.30 3.71
187 188 1.198408 GTGGACGTGTATGACTGTCGA 59.802 52.381 0.00 0.00 32.30 4.20
188 189 1.068816 TGTGGACGTGTATGACTGTCG 60.069 52.381 0.00 0.00 32.30 4.35
189 190 2.717580 TGTGGACGTGTATGACTGTC 57.282 50.000 0.00 0.00 0.00 3.51
190 191 2.547218 GGTTGTGGACGTGTATGACTGT 60.547 50.000 0.00 0.00 0.00 3.55
191 192 2.066262 GGTTGTGGACGTGTATGACTG 58.934 52.381 0.00 0.00 0.00 3.51
192 193 1.001633 GGGTTGTGGACGTGTATGACT 59.998 52.381 0.00 0.00 0.00 3.41
193 194 1.001633 AGGGTTGTGGACGTGTATGAC 59.998 52.381 0.00 0.00 0.00 3.06
194 195 1.344065 AGGGTTGTGGACGTGTATGA 58.656 50.000 0.00 0.00 0.00 2.15
195 196 2.997986 GTTAGGGTTGTGGACGTGTATG 59.002 50.000 0.00 0.00 0.00 2.39
196 197 2.353011 CGTTAGGGTTGTGGACGTGTAT 60.353 50.000 0.00 0.00 0.00 2.29
197 198 1.000385 CGTTAGGGTTGTGGACGTGTA 60.000 52.381 0.00 0.00 0.00 2.90
198 199 0.249573 CGTTAGGGTTGTGGACGTGT 60.250 55.000 0.00 0.00 0.00 4.49
199 200 0.249573 ACGTTAGGGTTGTGGACGTG 60.250 55.000 0.00 0.00 44.22 4.49
200 201 0.249573 CACGTTAGGGTTGTGGACGT 60.250 55.000 0.00 0.00 46.50 4.34
201 202 2.524300 CACGTTAGGGTTGTGGACG 58.476 57.895 0.00 0.00 39.43 4.79
217 218 2.258286 GGTTTGCGTGATGCCCAC 59.742 61.111 0.00 0.00 45.60 4.61
218 219 3.361158 CGGTTTGCGTGATGCCCA 61.361 61.111 0.00 0.00 45.60 5.36
219 220 4.114997 CCGGTTTGCGTGATGCCC 62.115 66.667 0.00 0.00 45.60 5.36
220 221 4.114997 CCCGGTTTGCGTGATGCC 62.115 66.667 0.00 0.00 45.60 4.40
221 222 4.776647 GCCCGGTTTGCGTGATGC 62.777 66.667 0.00 0.00 46.70 3.91
222 223 1.372838 TATGCCCGGTTTGCGTGATG 61.373 55.000 0.00 0.00 0.00 3.07
223 224 0.678366 TTATGCCCGGTTTGCGTGAT 60.678 50.000 0.00 0.00 0.00 3.06
224 225 0.889638 TTTATGCCCGGTTTGCGTGA 60.890 50.000 0.00 0.00 0.00 4.35
225 226 0.039074 TTTTATGCCCGGTTTGCGTG 60.039 50.000 0.00 0.00 0.00 5.34
226 227 0.038983 GTTTTATGCCCGGTTTGCGT 60.039 50.000 0.00 0.09 0.00 5.24
227 228 1.068287 CGTTTTATGCCCGGTTTGCG 61.068 55.000 0.00 0.00 0.00 4.85
228 229 0.038983 ACGTTTTATGCCCGGTTTGC 60.039 50.000 0.00 0.00 0.00 3.68
229 230 3.768468 ATACGTTTTATGCCCGGTTTG 57.232 42.857 0.00 0.00 0.00 2.93
230 231 5.124645 TCATATACGTTTTATGCCCGGTTT 58.875 37.500 0.00 0.00 0.00 3.27
231 232 4.706035 TCATATACGTTTTATGCCCGGTT 58.294 39.130 0.00 0.00 0.00 4.44
232 233 4.339872 TCATATACGTTTTATGCCCGGT 57.660 40.909 0.00 0.00 0.00 5.28
233 234 4.992319 TCTTCATATACGTTTTATGCCCGG 59.008 41.667 11.41 0.00 0.00 5.73
234 235 5.389516 GCTCTTCATATACGTTTTATGCCCG 60.390 44.000 11.41 0.00 0.00 6.13
235 236 5.468746 TGCTCTTCATATACGTTTTATGCCC 59.531 40.000 11.41 2.35 0.00 5.36
236 237 6.347725 CCTGCTCTTCATATACGTTTTATGCC 60.348 42.308 11.41 2.12 0.00 4.40
237 238 6.593978 CCTGCTCTTCATATACGTTTTATGC 58.406 40.000 11.41 3.32 0.00 3.14
238 239 6.347725 GGCCTGCTCTTCATATACGTTTTATG 60.348 42.308 0.00 2.39 0.00 1.90
239 240 5.701290 GGCCTGCTCTTCATATACGTTTTAT 59.299 40.000 0.00 0.00 0.00 1.40
240 241 5.054477 GGCCTGCTCTTCATATACGTTTTA 58.946 41.667 0.00 0.00 0.00 1.52
241 242 3.877508 GGCCTGCTCTTCATATACGTTTT 59.122 43.478 0.00 0.00 0.00 2.43
242 243 3.118408 TGGCCTGCTCTTCATATACGTTT 60.118 43.478 3.32 0.00 0.00 3.60
243 244 2.434336 TGGCCTGCTCTTCATATACGTT 59.566 45.455 3.32 0.00 0.00 3.99
244 245 2.036475 CTGGCCTGCTCTTCATATACGT 59.964 50.000 3.32 0.00 0.00 3.57
245 246 2.611473 CCTGGCCTGCTCTTCATATACG 60.611 54.545 3.32 0.00 0.00 3.06
246 247 2.634940 TCCTGGCCTGCTCTTCATATAC 59.365 50.000 3.32 0.00 0.00 1.47
247 248 2.634940 GTCCTGGCCTGCTCTTCATATA 59.365 50.000 3.32 0.00 0.00 0.86
248 249 1.419387 GTCCTGGCCTGCTCTTCATAT 59.581 52.381 3.32 0.00 0.00 1.78
249 250 0.833287 GTCCTGGCCTGCTCTTCATA 59.167 55.000 3.32 0.00 0.00 2.15
250 251 1.203441 TGTCCTGGCCTGCTCTTCAT 61.203 55.000 3.32 0.00 0.00 2.57
251 252 1.842920 TGTCCTGGCCTGCTCTTCA 60.843 57.895 3.32 0.00 0.00 3.02
252 253 1.376553 GTGTCCTGGCCTGCTCTTC 60.377 63.158 3.32 0.00 0.00 2.87
253 254 2.753029 GTGTCCTGGCCTGCTCTT 59.247 61.111 3.32 0.00 0.00 2.85
254 255 3.699894 CGTGTCCTGGCCTGCTCT 61.700 66.667 3.32 0.00 0.00 4.09
272 273 2.703798 CCTTGTTGATGCCAGCGGG 61.704 63.158 0.00 0.00 37.18 6.13
273 274 1.926511 GACCTTGTTGATGCCAGCGG 61.927 60.000 0.00 0.00 0.00 5.52
274 275 1.236616 TGACCTTGTTGATGCCAGCG 61.237 55.000 0.00 0.00 0.00 5.18
275 276 0.242017 GTGACCTTGTTGATGCCAGC 59.758 55.000 0.00 0.00 0.00 4.85
276 277 0.883833 GGTGACCTTGTTGATGCCAG 59.116 55.000 0.00 0.00 0.00 4.85
277 278 0.888736 CGGTGACCTTGTTGATGCCA 60.889 55.000 0.00 0.00 0.00 4.92
278 279 0.605319 TCGGTGACCTTGTTGATGCC 60.605 55.000 0.00 0.00 0.00 4.40
279 280 1.131126 CATCGGTGACCTTGTTGATGC 59.869 52.381 0.00 0.00 0.00 3.91
280 281 1.131126 GCATCGGTGACCTTGTTGATG 59.869 52.381 0.00 10.80 37.01 3.07
281 282 1.453155 GCATCGGTGACCTTGTTGAT 58.547 50.000 0.00 0.00 0.00 2.57
282 283 0.605319 GGCATCGGTGACCTTGTTGA 60.605 55.000 0.00 0.00 0.00 3.18
283 284 1.875963 GGCATCGGTGACCTTGTTG 59.124 57.895 0.00 0.00 0.00 3.33
284 285 1.671054 CGGCATCGGTGACCTTGTT 60.671 57.895 0.00 0.00 0.00 2.83
285 286 2.047274 CGGCATCGGTGACCTTGT 60.047 61.111 0.00 0.00 0.00 3.16
286 287 3.499737 GCGGCATCGGTGACCTTG 61.500 66.667 0.00 0.00 36.79 3.61
287 288 4.778143 GGCGGCATCGGTGACCTT 62.778 66.667 3.07 0.00 36.79 3.50
290 291 3.499737 CTTGGCGGCATCGGTGAC 61.500 66.667 14.32 0.00 36.79 3.67
291 292 3.664025 CTCTTGGCGGCATCGGTGA 62.664 63.158 14.32 5.79 36.79 4.02
292 293 3.197790 CTCTTGGCGGCATCGGTG 61.198 66.667 14.32 3.75 36.79 4.94
296 297 4.802051 TGGGCTCTTGGCGGCATC 62.802 66.667 14.32 2.35 42.94 3.91
297 298 4.133373 ATGGGCTCTTGGCGGCAT 62.133 61.111 14.32 0.00 42.94 4.40
301 302 3.060020 CTTGCATGGGCTCTTGGCG 62.060 63.158 1.11 0.00 42.94 5.69
302 303 2.718073 CCTTGCATGGGCTCTTGGC 61.718 63.158 10.81 0.00 41.91 4.52
303 304 2.056223 CCCTTGCATGGGCTCTTGG 61.056 63.158 23.67 0.00 40.84 3.61
304 305 2.056223 CCCCTTGCATGGGCTCTTG 61.056 63.158 28.46 13.23 45.78 3.02
305 306 2.361771 CCCCTTGCATGGGCTCTT 59.638 61.111 28.46 0.00 45.78 2.85
310 311 3.078836 CTTGGCCCCTTGCATGGG 61.079 66.667 27.23 27.23 46.56 4.00
311 312 0.979187 ATTCTTGGCCCCTTGCATGG 60.979 55.000 11.68 11.68 43.89 3.66
312 313 0.462789 GATTCTTGGCCCCTTGCATG 59.537 55.000 0.00 0.00 43.89 4.06
313 314 0.337428 AGATTCTTGGCCCCTTGCAT 59.663 50.000 0.00 0.00 43.89 3.96
314 315 0.998928 TAGATTCTTGGCCCCTTGCA 59.001 50.000 0.00 0.00 43.89 4.08
315 316 2.143876 TTAGATTCTTGGCCCCTTGC 57.856 50.000 0.00 0.00 40.16 4.01
316 317 4.098501 GTCAATTAGATTCTTGGCCCCTTG 59.901 45.833 0.00 0.00 0.00 3.61
317 318 4.281657 GTCAATTAGATTCTTGGCCCCTT 58.718 43.478 0.00 0.00 0.00 3.95
318 319 3.373110 GGTCAATTAGATTCTTGGCCCCT 60.373 47.826 0.00 0.00 40.50 4.79
319 320 2.959030 GGTCAATTAGATTCTTGGCCCC 59.041 50.000 0.00 0.00 40.50 5.80
320 321 2.618709 CGGTCAATTAGATTCTTGGCCC 59.381 50.000 0.00 0.00 42.84 5.80
321 322 3.312697 GTCGGTCAATTAGATTCTTGGCC 59.687 47.826 0.00 0.00 42.46 5.36
322 323 3.001330 CGTCGGTCAATTAGATTCTTGGC 59.999 47.826 0.00 0.00 0.00 4.52
323 324 4.430007 TCGTCGGTCAATTAGATTCTTGG 58.570 43.478 0.00 0.00 0.00 3.61
328 329 2.794910 CGCATCGTCGGTCAATTAGATT 59.205 45.455 0.00 0.00 0.00 2.40
339 340 2.601314 TGTTCTTTATTCGCATCGTCGG 59.399 45.455 0.00 0.00 0.00 4.79
340 341 3.899835 TGTTCTTTATTCGCATCGTCG 57.100 42.857 0.00 0.00 0.00 5.12
387 388 2.555448 GGGAGGGGAAAGAAAAGAGGTG 60.555 54.545 0.00 0.00 0.00 4.00
389 390 1.996291 AGGGAGGGGAAAGAAAAGAGG 59.004 52.381 0.00 0.00 0.00 3.69
433 434 0.036388 TGTCTCCATCTTTGGCGTCC 60.036 55.000 0.00 0.00 43.29 4.79
520 522 8.077991 TCCACCTGTCTATTTATTTACGTATCG 58.922 37.037 0.00 0.00 0.00 2.92
521 523 9.754382 TTCCACCTGTCTATTTATTTACGTATC 57.246 33.333 0.00 0.00 0.00 2.24
570 572 3.344515 CATCCGTCCGTCCATCTATCTA 58.655 50.000 0.00 0.00 0.00 1.98
672 690 6.096673 GTTTGGGATGGTCAAACTTTGTAT 57.903 37.500 11.11 0.00 46.02 2.29
689 707 4.215399 ACAAAGACGTGTATGATGTTTGGG 59.785 41.667 0.00 0.00 0.00 4.12
998 2112 3.410628 ACGCTCCCATGGCCATGA 61.411 61.111 41.32 24.58 41.20 3.07
1023 2137 6.255453 GCTTCACTAGTAAGCTCTTCTTCATG 59.745 42.308 20.58 0.00 44.75 3.07
1143 2259 5.389935 CGACCGAGAGAAAGAATGGAAAAAG 60.390 44.000 0.00 0.00 0.00 2.27
1164 2285 2.005971 AGCCAAGAAATACGGTCGAC 57.994 50.000 7.13 7.13 0.00 4.20
1171 2292 3.625764 TGCCACGATTAGCCAAGAAATAC 59.374 43.478 0.00 0.00 0.00 1.89
1174 2295 2.192664 TGCCACGATTAGCCAAGAAA 57.807 45.000 0.00 0.00 0.00 2.52
1393 2537 4.770795 ACTATTATCCGCACAGAAAGCTT 58.229 39.130 0.00 0.00 0.00 3.74
1430 2574 9.574516 AGTCAAGTATTTTAGAACAAAGGATGT 57.425 29.630 0.00 0.00 46.82 3.06
1522 2666 8.188139 CCGTTTTACAATACATGCCTTCTATTT 58.812 33.333 0.00 0.00 0.00 1.40
1523 2667 7.554835 TCCGTTTTACAATACATGCCTTCTATT 59.445 33.333 0.00 0.00 0.00 1.73
1524 2668 7.051623 TCCGTTTTACAATACATGCCTTCTAT 58.948 34.615 0.00 0.00 0.00 1.98
1525 2669 6.408035 TCCGTTTTACAATACATGCCTTCTA 58.592 36.000 0.00 0.00 0.00 2.10
1526 2670 5.250200 TCCGTTTTACAATACATGCCTTCT 58.750 37.500 0.00 0.00 0.00 2.85
1527 2671 5.448632 CCTCCGTTTTACAATACATGCCTTC 60.449 44.000 0.00 0.00 0.00 3.46
1528 2672 4.398044 CCTCCGTTTTACAATACATGCCTT 59.602 41.667 0.00 0.00 0.00 4.35
1529 2673 3.945285 CCTCCGTTTTACAATACATGCCT 59.055 43.478 0.00 0.00 0.00 4.75
1530 2674 3.066203 CCCTCCGTTTTACAATACATGCC 59.934 47.826 0.00 0.00 0.00 4.40
1531 2675 3.942748 TCCCTCCGTTTTACAATACATGC 59.057 43.478 0.00 0.00 0.00 4.06
1532 2676 5.183228 ACTCCCTCCGTTTTACAATACATG 58.817 41.667 0.00 0.00 0.00 3.21
1533 2677 5.431179 ACTCCCTCCGTTTTACAATACAT 57.569 39.130 0.00 0.00 0.00 2.29
1534 2678 4.895668 ACTCCCTCCGTTTTACAATACA 57.104 40.909 0.00 0.00 0.00 2.29
1535 2679 6.576185 TCATACTCCCTCCGTTTTACAATAC 58.424 40.000 0.00 0.00 0.00 1.89
1536 2680 6.381994 ACTCATACTCCCTCCGTTTTACAATA 59.618 38.462 0.00 0.00 0.00 1.90
1537 2681 5.189145 ACTCATACTCCCTCCGTTTTACAAT 59.811 40.000 0.00 0.00 0.00 2.71
1538 2682 4.529377 ACTCATACTCCCTCCGTTTTACAA 59.471 41.667 0.00 0.00 0.00 2.41
1539 2683 4.081862 CACTCATACTCCCTCCGTTTTACA 60.082 45.833 0.00 0.00 0.00 2.41
1540 2684 4.081807 ACACTCATACTCCCTCCGTTTTAC 60.082 45.833 0.00 0.00 0.00 2.01
1541 2685 4.091549 ACACTCATACTCCCTCCGTTTTA 58.908 43.478 0.00 0.00 0.00 1.52
1542 2686 2.904434 ACACTCATACTCCCTCCGTTTT 59.096 45.455 0.00 0.00 0.00 2.43
1543 2687 2.537143 ACACTCATACTCCCTCCGTTT 58.463 47.619 0.00 0.00 0.00 3.60
1544 2688 2.233305 ACACTCATACTCCCTCCGTT 57.767 50.000 0.00 0.00 0.00 4.44
1545 2689 3.596940 ATACACTCATACTCCCTCCGT 57.403 47.619 0.00 0.00 0.00 4.69
1546 2690 4.142359 GCATATACACTCATACTCCCTCCG 60.142 50.000 0.00 0.00 0.00 4.63
1547 2691 4.160626 GGCATATACACTCATACTCCCTCC 59.839 50.000 0.00 0.00 0.00 4.30
1548 2692 4.772624 TGGCATATACACTCATACTCCCTC 59.227 45.833 0.00 0.00 0.00 4.30
1549 2693 4.752063 TGGCATATACACTCATACTCCCT 58.248 43.478 0.00 0.00 0.00 4.20
1550 2694 5.046304 ACATGGCATATACACTCATACTCCC 60.046 44.000 0.00 0.00 0.00 4.30
1551 2695 6.042638 ACATGGCATATACACTCATACTCC 57.957 41.667 0.00 0.00 0.00 3.85
1552 2696 7.831753 AGTACATGGCATATACACTCATACTC 58.168 38.462 17.49 0.00 0.00 2.59
1553 2697 7.362142 CGAGTACATGGCATATACACTCATACT 60.362 40.741 17.49 6.51 32.39 2.12
1554 2698 6.747739 CGAGTACATGGCATATACACTCATAC 59.252 42.308 17.49 2.46 32.39 2.39
1555 2699 6.433093 ACGAGTACATGGCATATACACTCATA 59.567 38.462 17.49 0.00 32.39 2.15
1556 2700 5.243954 ACGAGTACATGGCATATACACTCAT 59.756 40.000 17.49 5.85 32.39 2.90
1557 2701 4.583073 ACGAGTACATGGCATATACACTCA 59.417 41.667 17.49 0.00 32.39 3.41
1558 2702 4.917998 CACGAGTACATGGCATATACACTC 59.082 45.833 17.49 15.94 0.00 3.51
1565 2709 4.021456 CCTTATCCACGAGTACATGGCATA 60.021 45.833 0.00 3.71 35.81 3.14
1617 2777 1.884075 AATAGGCAGGCACGACACGA 61.884 55.000 0.00 0.00 0.00 4.35
1698 3083 1.102154 TGCAACTTGGTGGACAGTTG 58.898 50.000 7.54 7.54 39.29 3.16
1727 3116 5.515797 TCCACTAGATTACGATGAACTGG 57.484 43.478 0.00 0.00 0.00 4.00
1830 3718 5.818678 TTACCAAGTCCTGTTGTAGATGT 57.181 39.130 0.00 0.00 0.00 3.06
1839 3727 1.339727 GCCGGATTTACCAAGTCCTGT 60.340 52.381 5.05 0.00 38.90 4.00
1841 3729 0.255033 GGCCGGATTTACCAAGTCCT 59.745 55.000 5.05 0.00 38.90 3.85
1864 3752 3.861263 GATGCGACCGGGCGTTTC 61.861 66.667 33.66 24.01 35.06 2.78
1879 3779 4.129737 CGGTCACTGTCCGCGGAT 62.130 66.667 33.58 13.52 41.48 4.18
1917 3817 2.542020 TGAGTGAGACGGATGCAAAA 57.458 45.000 0.00 0.00 0.00 2.44
2017 3932 1.008194 CGTGGACAACTCCGACGAA 60.008 57.895 0.00 0.00 40.59 3.85
2027 3942 0.109919 CTCATCGTCGTCGTGGACAA 60.110 55.000 1.33 0.00 36.73 3.18
2136 4082 4.719369 GGAGTCAAGACGCCGCGT 62.719 66.667 20.31 20.31 45.10 6.01
2149 4118 4.052229 CGGAGTCGGTTGCGGAGT 62.052 66.667 0.00 0.00 0.00 3.85
2239 4227 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2260 4841 2.038975 CGGGGGAGGAGTTGGAGA 59.961 66.667 0.00 0.00 0.00 3.71
2274 5365 0.816825 CTGGATGCAGTTGATCCGGG 60.817 60.000 5.98 0.00 42.22 5.73
2357 5554 4.717629 TTCTGACGCCGGAGCACG 62.718 66.667 5.05 0.27 39.83 5.34
2359 5556 2.048222 CTTTCTGACGCCGGAGCA 60.048 61.111 5.05 3.57 39.83 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.