Multiple sequence alignment - TraesCS3B01G491400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G491400 chr3B 100.000 3182 0 0 1 3182 737784749 737781568 0.000000e+00 5877.0
1 TraesCS3B01G491400 chr3B 98.577 1898 21 3 632 2528 737813855 737811963 0.000000e+00 3350.0
2 TraesCS3B01G491400 chr3B 94.717 1590 67 10 944 2528 737847454 737845877 0.000000e+00 2455.0
3 TraesCS3B01G491400 chr3B 93.274 669 32 3 2527 3182 737811849 737811181 0.000000e+00 974.0
4 TraesCS3B01G491400 chr3B 92.825 669 34 4 2527 3182 737845505 737844838 0.000000e+00 957.0
5 TraesCS3B01G491400 chr3B 97.417 542 11 3 1 540 737814424 737813884 0.000000e+00 920.0
6 TraesCS3B01G491400 chr3B 96.000 200 6 2 539 737 737784013 737784211 1.100000e-84 324.0
7 TraesCS3B01G491400 chr3B 100.000 92 0 0 539 630 737813750 737813841 1.520000e-38 171.0
8 TraesCS3B01G491400 chr3B 100.000 31 0 0 3026 3056 285124564 285124534 1.230000e-04 58.4
9 TraesCS3B01G491400 chrUn 97.104 1899 48 4 632 2528 272483358 272481465 0.000000e+00 3195.0
10 TraesCS3B01G491400 chrUn 97.104 1899 48 4 632 2528 279589743 279591636 0.000000e+00 3195.0
11 TraesCS3B01G491400 chrUn 93.572 669 30 3 2527 3182 272481352 272480684 0.000000e+00 985.0
12 TraesCS3B01G491400 chrUn 93.572 669 30 3 2527 3182 279591749 279592417 0.000000e+00 985.0
13 TraesCS3B01G491400 chrUn 97.967 541 8 3 1 540 272483925 272483387 0.000000e+00 935.0
14 TraesCS3B01G491400 chrUn 97.967 541 8 3 1 540 279589176 279589714 0.000000e+00 935.0
15 TraesCS3B01G491400 chrUn 98.925 93 0 1 539 630 272483252 272483344 7.060000e-37 165.0
16 TraesCS3B01G491400 chrUn 97.917 96 1 1 539 633 279589849 279589754 7.060000e-37 165.0
17 TraesCS3B01G491400 chr3D 93.355 1821 108 7 946 2765 554949381 554951189 0.000000e+00 2680.0
18 TraesCS3B01G491400 chr3D 81.277 1175 180 28 801 1959 554945324 554946474 0.000000e+00 915.0
19 TraesCS3B01G491400 chr3D 90.365 384 24 7 2799 3172 554951188 554951568 2.850000e-135 492.0
20 TraesCS3B01G491400 chr3D 84.483 406 45 8 121 518 472119141 472119536 4.980000e-103 385.0
21 TraesCS3B01G491400 chr3D 87.025 316 28 6 209 518 160523124 160523432 8.450000e-91 344.0
22 TraesCS3B01G491400 chr3A 93.642 1384 80 6 952 2332 691732979 691731601 0.000000e+00 2061.0
23 TraesCS3B01G491400 chr3A 80.773 1165 164 33 801 1942 691736360 691735233 0.000000e+00 856.0
24 TraesCS3B01G491400 chr3A 91.638 586 42 5 2379 2960 691731601 691731019 0.000000e+00 804.0
25 TraesCS3B01G491400 chr3A 77.941 884 170 15 1065 1933 691742683 691741810 2.170000e-146 529.0
26 TraesCS3B01G491400 chr3A 79.082 196 38 1 1344 1539 691587501 691587309 7.160000e-27 132.0
27 TraesCS3B01G491400 chr3A 92.857 42 1 2 3092 3131 635098576 635098535 3.430000e-05 60.2
28 TraesCS3B01G491400 chr4D 86.445 391 41 7 114 498 298111923 298111539 4.910000e-113 418.0
29 TraesCS3B01G491400 chr6B 82.201 427 47 15 120 526 485460515 485460098 1.090000e-89 340.0
30 TraesCS3B01G491400 chr1A 83.967 368 33 14 120 479 451854061 451854410 2.370000e-86 329.0
31 TraesCS3B01G491400 chr1A 84.034 119 19 0 2654 2772 509915385 509915503 7.210000e-22 115.0
32 TraesCS3B01G491400 chr2A 80.630 413 53 17 117 518 257572 257968 8.630000e-76 294.0
33 TraesCS3B01G491400 chr1D 86.087 115 15 1 2658 2772 412641706 412641593 4.310000e-24 122.0
34 TraesCS3B01G491400 chr1D 85.217 115 15 2 2658 2772 412745684 412745572 2.010000e-22 117.0
35 TraesCS3B01G491400 chr1D 78.641 103 14 4 3041 3137 62339727 62339627 9.530000e-06 62.1
36 TraesCS3B01G491400 chr4A 75.083 301 50 17 119 405 635366190 635365901 2.010000e-22 117.0
37 TraesCS3B01G491400 chr5D 79.365 126 16 6 3022 3138 9016469 9016345 2.630000e-11 80.5
38 TraesCS3B01G491400 chr1B 100.000 34 0 0 2493 2526 11863188 11863221 2.650000e-06 63.9
39 TraesCS3B01G491400 chr2B 100.000 28 0 0 3026 3053 25634782 25634755 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G491400 chr3B 737781568 737784749 3181 True 5877.000000 5877 100.000000 1 3182 1 chr3B.!!$R2 3181
1 TraesCS3B01G491400 chr3B 737811181 737814424 3243 True 1748.000000 3350 96.422667 1 3182 3 chr3B.!!$R3 3181
2 TraesCS3B01G491400 chr3B 737844838 737847454 2616 True 1706.000000 2455 93.771000 944 3182 2 chr3B.!!$R4 2238
3 TraesCS3B01G491400 chrUn 272480684 272483925 3241 True 1705.000000 3195 96.214333 1 3182 3 chrUn.!!$R2 3181
4 TraesCS3B01G491400 chrUn 279589176 279592417 3241 False 1705.000000 3195 96.214333 1 3182 3 chrUn.!!$F2 3181
5 TraesCS3B01G491400 chr3D 554945324 554951568 6244 False 1362.333333 2680 88.332333 801 3172 3 chr3D.!!$F3 2371
6 TraesCS3B01G491400 chr3A 691731019 691736360 5341 True 1240.333333 2061 88.684333 801 2960 3 chr3A.!!$R4 2159
7 TraesCS3B01G491400 chr3A 691741810 691742683 873 True 529.000000 529 77.941000 1065 1933 1 chr3A.!!$R3 868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 602 0.478072 AACCTTGTCATCCTGGTGCA 59.522 50.000 0.0 0.0 32.53 4.57 F
600 603 0.700564 ACCTTGTCATCCTGGTGCAT 59.299 50.000 0.0 0.0 0.00 3.96 F
601 604 1.076024 ACCTTGTCATCCTGGTGCATT 59.924 47.619 0.0 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 6049 2.290641 CACATATAAAACGCAGCTCCCC 59.709 50.000 0.00 0.00 0.00 4.81 R
2165 6131 2.877168 GACTTCTATTGCCCATCTGCAG 59.123 50.000 7.63 7.63 43.21 4.41 R
2195 6161 4.592485 ACAAAACTTGACACCACACAAA 57.408 36.364 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
264 265 1.818060 TCGGAGCATTTGGACATTTGG 59.182 47.619 0.00 0.00 0.00 3.28
312 313 9.520515 AAATTTGGTCAGAACAGTATATGAACT 57.479 29.630 0.00 0.00 30.58 3.01
559 562 8.887036 ATATATCAAATCGTCAGTGCTGTTAA 57.113 30.769 0.00 0.00 0.00 2.01
560 563 5.940192 ATCAAATCGTCAGTGCTGTTAAA 57.060 34.783 0.00 0.00 0.00 1.52
563 566 5.700832 TCAAATCGTCAGTGCTGTTAAAGAT 59.299 36.000 0.00 0.00 0.00 2.40
565 568 6.893958 AATCGTCAGTGCTGTTAAAGATAG 57.106 37.500 0.00 0.00 0.00 2.08
567 570 3.307242 CGTCAGTGCTGTTAAAGATAGCC 59.693 47.826 0.00 0.00 41.40 3.93
568 571 4.253685 GTCAGTGCTGTTAAAGATAGCCA 58.746 43.478 0.00 0.00 41.40 4.75
569 572 4.695455 GTCAGTGCTGTTAAAGATAGCCAA 59.305 41.667 0.00 0.00 41.40 4.52
570 573 4.937620 TCAGTGCTGTTAAAGATAGCCAAG 59.062 41.667 0.00 0.00 41.40 3.61
571 574 4.937620 CAGTGCTGTTAAAGATAGCCAAGA 59.062 41.667 0.00 0.00 41.40 3.02
572 575 5.064452 CAGTGCTGTTAAAGATAGCCAAGAG 59.936 44.000 0.00 0.00 41.40 2.85
573 576 3.941483 TGCTGTTAAAGATAGCCAAGAGC 59.059 43.478 0.00 0.00 41.40 4.09
574 577 3.313803 GCTGTTAAAGATAGCCAAGAGCC 59.686 47.826 0.00 0.00 45.47 4.70
575 578 4.517285 CTGTTAAAGATAGCCAAGAGCCA 58.483 43.478 0.00 0.00 45.47 4.75
576 579 4.917385 TGTTAAAGATAGCCAAGAGCCAA 58.083 39.130 0.00 0.00 45.47 4.52
577 580 4.943705 TGTTAAAGATAGCCAAGAGCCAAG 59.056 41.667 0.00 0.00 45.47 3.61
578 581 5.186198 GTTAAAGATAGCCAAGAGCCAAGA 58.814 41.667 0.00 0.00 45.47 3.02
579 582 4.516652 AAAGATAGCCAAGAGCCAAGAT 57.483 40.909 0.00 0.00 45.47 2.40
580 583 5.636903 AAAGATAGCCAAGAGCCAAGATA 57.363 39.130 0.00 0.00 45.47 1.98
581 584 5.636903 AAGATAGCCAAGAGCCAAGATAA 57.363 39.130 0.00 0.00 45.47 1.75
582 585 4.967036 AGATAGCCAAGAGCCAAGATAAC 58.033 43.478 0.00 0.00 45.47 1.89
583 586 2.426842 AGCCAAGAGCCAAGATAACC 57.573 50.000 0.00 0.00 45.47 2.85
584 587 1.918957 AGCCAAGAGCCAAGATAACCT 59.081 47.619 0.00 0.00 45.47 3.50
585 588 2.310052 AGCCAAGAGCCAAGATAACCTT 59.690 45.455 0.00 0.00 45.47 3.50
596 599 4.848357 CAAGATAACCTTGTCATCCTGGT 58.152 43.478 0.00 0.00 45.52 4.00
597 600 4.494091 AGATAACCTTGTCATCCTGGTG 57.506 45.455 0.00 0.00 32.53 4.17
598 601 2.489938 TAACCTTGTCATCCTGGTGC 57.510 50.000 0.00 0.00 32.53 5.01
599 602 0.478072 AACCTTGTCATCCTGGTGCA 59.522 50.000 0.00 0.00 32.53 4.57
600 603 0.700564 ACCTTGTCATCCTGGTGCAT 59.299 50.000 0.00 0.00 0.00 3.96
601 604 1.076024 ACCTTGTCATCCTGGTGCATT 59.924 47.619 0.00 0.00 0.00 3.56
602 605 2.308570 ACCTTGTCATCCTGGTGCATTA 59.691 45.455 0.00 0.00 0.00 1.90
603 606 2.684881 CCTTGTCATCCTGGTGCATTAC 59.315 50.000 0.00 0.00 0.00 1.89
604 607 3.614092 CTTGTCATCCTGGTGCATTACT 58.386 45.455 0.00 0.00 0.00 2.24
605 608 3.266510 TGTCATCCTGGTGCATTACTC 57.733 47.619 0.00 0.00 0.00 2.59
606 609 2.571202 TGTCATCCTGGTGCATTACTCA 59.429 45.455 0.00 0.00 0.00 3.41
607 610 3.200605 TGTCATCCTGGTGCATTACTCAT 59.799 43.478 0.00 0.00 0.00 2.90
608 611 3.562973 GTCATCCTGGTGCATTACTCATG 59.437 47.826 0.00 0.00 35.73 3.07
622 625 7.691430 CATTACTCATGCTAACTACACTCTG 57.309 40.000 0.00 0.00 0.00 3.35
623 626 7.484140 CATTACTCATGCTAACTACACTCTGA 58.516 38.462 0.00 0.00 0.00 3.27
624 627 5.984695 ACTCATGCTAACTACACTCTGAA 57.015 39.130 0.00 0.00 0.00 3.02
625 628 6.346477 ACTCATGCTAACTACACTCTGAAA 57.654 37.500 0.00 0.00 0.00 2.69
626 629 6.159988 ACTCATGCTAACTACACTCTGAAAC 58.840 40.000 0.00 0.00 0.00 2.78
627 630 5.479306 TCATGCTAACTACACTCTGAAACC 58.521 41.667 0.00 0.00 0.00 3.27
628 631 5.246203 TCATGCTAACTACACTCTGAAACCT 59.754 40.000 0.00 0.00 0.00 3.50
629 632 6.436218 TCATGCTAACTACACTCTGAAACCTA 59.564 38.462 0.00 0.00 0.00 3.08
630 633 6.022163 TGCTAACTACACTCTGAAACCTAC 57.978 41.667 0.00 0.00 0.00 3.18
839 843 2.096218 CACCTTTTCTCTTCGGCTTTCG 60.096 50.000 0.00 0.00 40.90 3.46
2076 6042 7.995289 TGACGAAACTAATGGCATATGAAATT 58.005 30.769 6.97 7.63 0.00 1.82
2083 6049 7.596494 ACTAATGGCATATGAAATTGATTCCG 58.404 34.615 6.97 0.00 37.22 4.30
2195 6161 8.223330 AGATGGGCAATAGAAGTCTTCAATTAT 58.777 33.333 14.97 1.70 0.00 1.28
2298 6264 7.119262 ACCTTTATGAAGTCGTGATAGTTTTGG 59.881 37.037 0.00 0.00 0.00 3.28
2374 6340 7.592533 CAGTTAACAACTTAGTAACTCTGCGTA 59.407 37.037 8.61 0.00 40.46 4.42
2375 6341 7.592903 AGTTAACAACTTAGTAACTCTGCGTAC 59.407 37.037 8.61 0.00 39.04 3.67
2376 6342 4.470462 ACAACTTAGTAACTCTGCGTACG 58.530 43.478 11.84 11.84 0.00 3.67
2377 6343 3.128465 ACTTAGTAACTCTGCGTACGC 57.872 47.619 32.49 32.49 42.35 4.42
2463 6429 3.640592 TGCTTGTGTTTGTGCATGTATG 58.359 40.909 0.00 0.00 0.00 2.39
2623 6964 8.986477 ATTCAATATTTGTGCTTTGACCTTAC 57.014 30.769 0.00 0.00 0.00 2.34
2674 7015 8.904834 GTCCTCATGTCACTACTAGAATTTCTA 58.095 37.037 6.01 6.01 0.00 2.10
2740 7081 3.596214 TCGGCAGAGACTTTACCAAATC 58.404 45.455 0.00 0.00 0.00 2.17
2773 7114 3.073101 GGTACTCGGCCCGAACCT 61.073 66.667 17.81 1.69 34.92 3.50
2775 7116 1.447314 GTACTCGGCCCGAACCTTG 60.447 63.158 7.50 0.00 34.74 3.61
2881 7226 7.043722 GCTAAGATTTGAAGATAGTGTGTCTCG 60.044 40.741 0.00 0.00 0.00 4.04
2913 7258 5.928976 TGAAATGATATCGGAGATTGGTGT 58.071 37.500 0.00 0.00 45.12 4.16
2960 7306 3.567478 AGCCCAGATCAAGACCATAAC 57.433 47.619 0.00 0.00 0.00 1.89
3063 7409 7.284716 CGGGTTTATTAGGCCTCTCTTATTTTT 59.715 37.037 9.68 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
540 543 5.342806 TCTTTAACAGCACTGACGATTTG 57.657 39.130 4.31 0.00 0.00 2.32
541 544 6.183360 GCTATCTTTAACAGCACTGACGATTT 60.183 38.462 4.31 0.00 35.35 2.17
543 546 4.806247 GCTATCTTTAACAGCACTGACGAT 59.194 41.667 4.31 1.93 35.35 3.73
545 548 3.307242 GGCTATCTTTAACAGCACTGACG 59.693 47.826 4.31 0.00 37.02 4.35
546 549 4.253685 TGGCTATCTTTAACAGCACTGAC 58.746 43.478 4.31 0.00 37.02 3.51
547 550 4.551702 TGGCTATCTTTAACAGCACTGA 57.448 40.909 4.31 0.00 37.02 3.41
548 551 4.937620 TCTTGGCTATCTTTAACAGCACTG 59.062 41.667 0.00 0.00 37.02 3.66
550 553 4.201861 GCTCTTGGCTATCTTTAACAGCAC 60.202 45.833 0.00 0.00 37.02 4.40
553 556 4.517285 TGGCTCTTGGCTATCTTTAACAG 58.483 43.478 0.00 0.00 41.46 3.16
554 557 4.568072 TGGCTCTTGGCTATCTTTAACA 57.432 40.909 0.00 0.00 41.46 2.41
555 558 5.186198 TCTTGGCTCTTGGCTATCTTTAAC 58.814 41.667 0.00 0.00 41.46 2.01
557 560 5.636903 ATCTTGGCTCTTGGCTATCTTTA 57.363 39.130 0.00 0.00 41.46 1.85
558 561 4.516652 ATCTTGGCTCTTGGCTATCTTT 57.483 40.909 0.00 0.00 41.46 2.52
559 562 5.372373 GTTATCTTGGCTCTTGGCTATCTT 58.628 41.667 0.00 0.00 41.46 2.40
560 563 4.202409 GGTTATCTTGGCTCTTGGCTATCT 60.202 45.833 0.00 0.00 41.46 1.98
563 566 3.115390 AGGTTATCTTGGCTCTTGGCTA 58.885 45.455 0.00 0.00 41.46 3.93
565 568 2.424956 CAAGGTTATCTTGGCTCTTGGC 59.575 50.000 0.00 0.00 46.81 4.52
575 578 4.848357 CACCAGGATGACAAGGTTATCTT 58.152 43.478 0.00 0.00 39.69 2.40
576 579 3.370953 GCACCAGGATGACAAGGTTATCT 60.371 47.826 0.00 0.00 39.69 1.98
577 580 2.945668 GCACCAGGATGACAAGGTTATC 59.054 50.000 0.00 0.00 39.69 1.75
578 581 2.308570 TGCACCAGGATGACAAGGTTAT 59.691 45.455 0.00 0.00 39.69 1.89
579 582 1.702401 TGCACCAGGATGACAAGGTTA 59.298 47.619 0.00 0.00 39.69 2.85
580 583 0.478072 TGCACCAGGATGACAAGGTT 59.522 50.000 0.00 0.00 39.69 3.50
581 584 0.700564 ATGCACCAGGATGACAAGGT 59.299 50.000 0.00 0.00 39.69 3.50
582 585 1.843368 AATGCACCAGGATGACAAGG 58.157 50.000 0.00 0.00 39.69 3.61
583 586 3.614092 AGTAATGCACCAGGATGACAAG 58.386 45.455 0.00 0.00 39.69 3.16
584 587 3.008923 TGAGTAATGCACCAGGATGACAA 59.991 43.478 0.00 0.00 39.69 3.18
585 588 2.571202 TGAGTAATGCACCAGGATGACA 59.429 45.455 0.00 0.00 39.69 3.58
586 589 3.266510 TGAGTAATGCACCAGGATGAC 57.733 47.619 0.00 0.00 39.69 3.06
587 590 3.812262 CATGAGTAATGCACCAGGATGA 58.188 45.455 0.00 0.00 39.69 2.92
598 601 7.484140 TCAGAGTGTAGTTAGCATGAGTAATG 58.516 38.462 0.00 0.00 39.49 1.90
599 602 7.646548 TCAGAGTGTAGTTAGCATGAGTAAT 57.353 36.000 0.00 0.00 0.00 1.89
600 603 7.462571 TTCAGAGTGTAGTTAGCATGAGTAA 57.537 36.000 0.00 0.00 0.00 2.24
601 604 7.313646 GTTTCAGAGTGTAGTTAGCATGAGTA 58.686 38.462 0.00 0.00 0.00 2.59
602 605 5.984695 TTCAGAGTGTAGTTAGCATGAGT 57.015 39.130 0.00 0.00 0.00 3.41
603 606 5.578727 GGTTTCAGAGTGTAGTTAGCATGAG 59.421 44.000 0.00 0.00 0.00 2.90
604 607 5.246203 AGGTTTCAGAGTGTAGTTAGCATGA 59.754 40.000 0.00 0.00 0.00 3.07
605 608 5.482908 AGGTTTCAGAGTGTAGTTAGCATG 58.517 41.667 0.00 0.00 0.00 4.06
606 609 5.746990 AGGTTTCAGAGTGTAGTTAGCAT 57.253 39.130 0.00 0.00 0.00 3.79
607 610 5.773680 AGTAGGTTTCAGAGTGTAGTTAGCA 59.226 40.000 0.00 0.00 0.00 3.49
608 611 6.094061 CAGTAGGTTTCAGAGTGTAGTTAGC 58.906 44.000 0.00 0.00 0.00 3.09
609 612 6.622549 CCAGTAGGTTTCAGAGTGTAGTTAG 58.377 44.000 0.00 0.00 0.00 2.34
610 613 6.585695 CCAGTAGGTTTCAGAGTGTAGTTA 57.414 41.667 0.00 0.00 0.00 2.24
611 614 5.470047 CCAGTAGGTTTCAGAGTGTAGTT 57.530 43.478 0.00 0.00 0.00 2.24
626 629 4.253685 CCTATTGTGTGTTGACCAGTAGG 58.746 47.826 0.00 0.00 42.21 3.18
627 630 4.894784 ACCTATTGTGTGTTGACCAGTAG 58.105 43.478 0.00 0.00 0.00 2.57
628 631 4.967084 ACCTATTGTGTGTTGACCAGTA 57.033 40.909 0.00 0.00 0.00 2.74
629 632 3.857157 ACCTATTGTGTGTTGACCAGT 57.143 42.857 0.00 0.00 0.00 4.00
630 633 4.578516 TGAAACCTATTGTGTGTTGACCAG 59.421 41.667 0.00 0.00 0.00 4.00
839 843 0.103208 CGGACATAGAGGTGGAGCAC 59.897 60.000 0.00 0.00 0.00 4.40
2076 6042 4.161295 CGCAGCTCCCCGGAATCA 62.161 66.667 0.73 0.00 0.00 2.57
2083 6049 2.290641 CACATATAAAACGCAGCTCCCC 59.709 50.000 0.00 0.00 0.00 4.81
2165 6131 2.877168 GACTTCTATTGCCCATCTGCAG 59.123 50.000 7.63 7.63 43.21 4.41
2195 6161 4.592485 ACAAAACTTGACACCACACAAA 57.408 36.364 0.00 0.00 0.00 2.83
2259 6225 9.871238 GACTTCATAAAGGTCTACACAAGATAA 57.129 33.333 0.00 0.00 36.78 1.75
2260 6226 8.188799 CGACTTCATAAAGGTCTACACAAGATA 58.811 37.037 0.00 0.00 36.78 1.98
2482 6448 6.348213 GCTGTGTTTTGGTACTATGGTGTTAG 60.348 42.308 0.00 0.00 0.00 2.34
2665 7006 7.447594 TGGTACTCGGAAAACTTAGAAATTCT 58.552 34.615 0.00 0.00 0.00 2.40
2814 7155 0.597072 GTCGTGTCGTCTTCTTCCCT 59.403 55.000 0.00 0.00 0.00 4.20
2906 7251 0.106769 TGTGCACTCACCACACCAAT 60.107 50.000 19.41 0.00 42.46 3.16
2913 7258 6.937465 TGTAAGTATTTAATGTGCACTCACCA 59.063 34.615 19.41 0.00 42.46 4.17
2960 7306 9.480053 AACAAATTTTCAATGTACTGGAAGATG 57.520 29.630 0.00 0.00 37.43 2.90
3002 7348 7.055378 AGTGGTATACAACAACCAACAAACTA 58.945 34.615 12.97 0.00 46.97 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.