Multiple sequence alignment - TraesCS3B01G490800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G490800 chr3B 100.000 4127 0 0 1 4127 736916683 736912557 0.000000e+00 7622
1 TraesCS3B01G490800 chr3B 98.498 1332 14 1 2802 4127 736891693 736890362 0.000000e+00 2344
2 TraesCS3B01G490800 chr3B 75.662 1208 249 30 1523 2706 736741712 736740526 1.000000e-155 560
3 TraesCS3B01G490800 chr3B 85.098 510 50 17 3544 4043 736925596 736925103 7.970000e-137 497
4 TraesCS3B01G490800 chr3B 79.502 683 125 7 1529 2199 736712861 736712182 4.830000e-129 472
5 TraesCS3B01G490800 chr3B 84.211 247 38 1 8 254 405931487 405931732 5.330000e-59 239
6 TraesCS3B01G490800 chr3A 89.618 2254 197 18 1238 3473 691093061 691090827 0.000000e+00 2832
7 TraesCS3B01G490800 chr3A 76.440 1354 270 38 1510 2836 690999065 690997734 0.000000e+00 688
8 TraesCS3B01G490800 chr3A 85.600 500 49 16 3548 4043 691107522 691107042 1.710000e-138 503
9 TraesCS3B01G490800 chr3A 86.901 313 37 3 936 1248 691093419 691093111 8.490000e-92 348
10 TraesCS3B01G490800 chr3A 78.545 275 56 2 3 274 729537418 729537144 1.180000e-40 178
11 TraesCS3B01G490800 chrUn 98.504 1471 16 1 2663 4127 356161478 356160008 0.000000e+00 2590
12 TraesCS3B01G490800 chrUn 77.322 1098 226 21 1746 2831 40648520 40649606 9.740000e-176 627
13 TraesCS3B01G490800 chrUn 77.969 640 108 22 2 624 33023025 33022402 1.810000e-98 370
14 TraesCS3B01G490800 chrUn 81.065 507 48 17 3541 4043 378000453 378000915 1.090000e-95 361
15 TraesCS3B01G490800 chrUn 80.276 507 49 21 3541 4043 45257337 45257796 6.610000e-88 335
16 TraesCS3B01G490800 chrUn 80.276 507 49 21 3541 4043 378184209 378184668 6.610000e-88 335
17 TraesCS3B01G490800 chrUn 82.105 285 34 10 3763 4043 404872834 404872563 1.150000e-55 228
18 TraesCS3B01G490800 chrUn 88.415 164 19 0 2949 3112 40649699 40649862 9.050000e-47 198
19 TraesCS3B01G490800 chrUn 85.030 167 11 5 3541 3707 386127139 386127291 1.540000e-34 158
20 TraesCS3B01G490800 chr3D 75.184 1906 416 45 945 2822 554688999 554687123 0.000000e+00 846
21 TraesCS3B01G490800 chr3D 78.560 639 111 17 2 624 277228271 277228899 8.310000e-107 398
22 TraesCS3B01G490800 chr3D 77.830 636 115 16 2 622 120119788 120120412 1.810000e-98 370
23 TraesCS3B01G490800 chr3D 80.798 401 48 14 2946 3324 554687023 554686630 1.880000e-73 287
24 TraesCS3B01G490800 chr3D 88.462 182 18 2 1790 1971 554728093 554727915 2.500000e-52 217
25 TraesCS3B01G490800 chr3D 85.366 164 10 5 3544 3707 554774141 554773992 1.540000e-34 158
26 TraesCS3B01G490800 chr7A 80.000 630 97 17 8 621 672698135 672697519 4.900000e-119 438
27 TraesCS3B01G490800 chr1B 79.499 639 104 18 2 624 215946010 215945383 2.950000e-116 429
28 TraesCS3B01G490800 chr6D 79.430 632 103 16 8 624 207074865 207075484 4.930000e-114 422
29 TraesCS3B01G490800 chr6D 80.734 436 61 11 1 422 470739085 470738659 6.660000e-83 318
30 TraesCS3B01G490800 chr6D 85.567 194 28 0 729 922 218386647 218386840 1.940000e-48 204
31 TraesCS3B01G490800 chr6D 83.505 194 32 0 729 922 327022156 327021963 9.110000e-42 182
32 TraesCS3B01G490800 chr7D 78.717 639 109 18 2 624 589394519 589393892 6.430000e-108 401
33 TraesCS3B01G490800 chr7D 84.456 193 29 1 730 922 373582255 373582446 5.450000e-44 189
34 TraesCS3B01G490800 chr4D 78.302 636 105 22 8 624 196882415 196881794 3.010000e-101 379
35 TraesCS3B01G490800 chr2A 77.934 639 115 15 2 624 194345980 194346608 3.890000e-100 375
36 TraesCS3B01G490800 chr2A 77.656 640 113 20 2 624 82458787 82459413 3.030000e-96 363
37 TraesCS3B01G490800 chr5D 77.621 639 116 16 2 624 179784173 179784800 3.030000e-96 363
38 TraesCS3B01G490800 chr7B 78.020 596 100 15 8 587 384105704 384105124 3.050000e-91 346
39 TraesCS3B01G490800 chr7B 86.082 194 27 0 729 922 519904291 519904098 4.180000e-50 209
40 TraesCS3B01G490800 chr6B 86.911 191 25 0 732 922 343040950 343040760 8.990000e-52 215
41 TraesCS3B01G490800 chr6B 82.203 236 42 0 1 236 720104916 720105151 1.940000e-48 204
42 TraesCS3B01G490800 chr6B 81.702 235 43 0 2 236 720059425 720059659 3.250000e-46 196
43 TraesCS3B01G490800 chr6B 81.702 235 41 1 2 236 720114530 720114762 1.170000e-45 195
44 TraesCS3B01G490800 chr2D 86.188 181 24 1 742 922 325808572 325808393 1.170000e-45 195
45 TraesCS3B01G490800 chr2B 84.974 193 25 4 732 922 177133718 177133528 4.210000e-45 193
46 TraesCS3B01G490800 chr2B 83.854 192 29 2 732 922 177134193 177134003 9.110000e-42 182
47 TraesCS3B01G490800 chr1D 84.456 193 29 1 730 922 169066304 169066495 5.450000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G490800 chr3B 736912557 736916683 4126 True 7622.0 7622 100.0000 1 4127 1 chr3B.!!$R4 4126
1 TraesCS3B01G490800 chr3B 736890362 736891693 1331 True 2344.0 2344 98.4980 2802 4127 1 chr3B.!!$R3 1325
2 TraesCS3B01G490800 chr3B 736740526 736741712 1186 True 560.0 560 75.6620 1523 2706 1 chr3B.!!$R2 1183
3 TraesCS3B01G490800 chr3B 736712182 736712861 679 True 472.0 472 79.5020 1529 2199 1 chr3B.!!$R1 670
4 TraesCS3B01G490800 chr3A 691090827 691093419 2592 True 1590.0 2832 88.2595 936 3473 2 chr3A.!!$R4 2537
5 TraesCS3B01G490800 chr3A 690997734 690999065 1331 True 688.0 688 76.4400 1510 2836 1 chr3A.!!$R1 1326
6 TraesCS3B01G490800 chrUn 356160008 356161478 1470 True 2590.0 2590 98.5040 2663 4127 1 chrUn.!!$R2 1464
7 TraesCS3B01G490800 chrUn 40648520 40649862 1342 False 412.5 627 82.8685 1746 3112 2 chrUn.!!$F5 1366
8 TraesCS3B01G490800 chrUn 33022402 33023025 623 True 370.0 370 77.9690 2 624 1 chrUn.!!$R1 622
9 TraesCS3B01G490800 chr3D 554686630 554688999 2369 True 566.5 846 77.9910 945 3324 2 chr3D.!!$R3 2379
10 TraesCS3B01G490800 chr3D 277228271 277228899 628 False 398.0 398 78.5600 2 624 1 chr3D.!!$F2 622
11 TraesCS3B01G490800 chr3D 120119788 120120412 624 False 370.0 370 77.8300 2 622 1 chr3D.!!$F1 620
12 TraesCS3B01G490800 chr7A 672697519 672698135 616 True 438.0 438 80.0000 8 621 1 chr7A.!!$R1 613
13 TraesCS3B01G490800 chr1B 215945383 215946010 627 True 429.0 429 79.4990 2 624 1 chr1B.!!$R1 622
14 TraesCS3B01G490800 chr6D 207074865 207075484 619 False 422.0 422 79.4300 8 624 1 chr6D.!!$F1 616
15 TraesCS3B01G490800 chr7D 589393892 589394519 627 True 401.0 401 78.7170 2 624 1 chr7D.!!$R1 622
16 TraesCS3B01G490800 chr4D 196881794 196882415 621 True 379.0 379 78.3020 8 624 1 chr4D.!!$R1 616
17 TraesCS3B01G490800 chr2A 194345980 194346608 628 False 375.0 375 77.9340 2 624 1 chr2A.!!$F2 622
18 TraesCS3B01G490800 chr2A 82458787 82459413 626 False 363.0 363 77.6560 2 624 1 chr2A.!!$F1 622
19 TraesCS3B01G490800 chr5D 179784173 179784800 627 False 363.0 363 77.6210 2 624 1 chr5D.!!$F1 622
20 TraesCS3B01G490800 chr7B 384105124 384105704 580 True 346.0 346 78.0200 8 587 1 chr7B.!!$R1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 671 0.106719 CCCTACCTTACCCCGACGTA 60.107 60.0 0.00 0.0 0.0 3.57 F
1460 1542 0.096454 GTTCTTCCGCGCATTGGTAC 59.904 55.0 8.75 0.0 0.0 3.34 F
1824 1924 0.320374 TTGGCTACAGTTGTCCCGAG 59.680 55.0 0.00 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1564 0.396695 CTCTCCCTGCCAATGCCATT 60.397 55.000 0.00 0.0 36.33 3.16 R
2506 2616 0.605860 GCCCAGCAGAGCCTATCATG 60.606 60.000 0.00 0.0 0.00 3.07 R
3590 3728 1.808945 ACTCCAGCTGCTTCATTTTCG 59.191 47.619 8.66 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 2.365617 GCTATTCCTGACCTTCGATCCA 59.634 50.000 0.00 0.00 0.00 3.41
62 64 1.938585 TTCCTGACCTTCGATCCACT 58.061 50.000 0.00 0.00 0.00 4.00
68 70 1.135333 GACCTTCGATCCACTCCTCAC 59.865 57.143 0.00 0.00 0.00 3.51
76 78 1.801242 TCCACTCCTCACCTTGTTGA 58.199 50.000 0.00 0.00 0.00 3.18
77 79 2.338809 TCCACTCCTCACCTTGTTGAT 58.661 47.619 0.00 0.00 0.00 2.57
88 90 7.040478 TCCTCACCTTGTTGATGACTAAAAATG 60.040 37.037 0.00 0.00 0.00 2.32
100 102 4.215399 TGACTAAAAATGCACTTCTTCCCG 59.785 41.667 0.00 0.00 0.00 5.14
107 109 0.599204 GCACTTCTTCCCGTGTCGAA 60.599 55.000 0.00 0.00 33.78 3.71
118 120 0.586319 CGTGTCGAACATTGGCAACT 59.414 50.000 0.00 0.00 37.61 3.16
124 126 4.517075 TGTCGAACATTGGCAACTAATTGA 59.483 37.500 0.00 0.00 38.15 2.57
154 156 7.437713 TCATGTATTACTGTCTCCCTTCAAT 57.562 36.000 0.00 0.00 0.00 2.57
155 157 7.275183 TCATGTATTACTGTCTCCCTTCAATG 58.725 38.462 0.00 0.00 0.00 2.82
207 209 9.725019 ATATTTGATTTCCTTTTCTCCCAAAAC 57.275 29.630 0.00 0.00 0.00 2.43
227 229 7.599621 CCAAAACACATGCAATCTTCTCATTAA 59.400 33.333 0.00 0.00 0.00 1.40
274 276 5.186198 TGTCGAGATAAGATGTGAGTCTCA 58.814 41.667 0.00 0.00 36.07 3.27
286 302 3.055602 TGTGAGTCTCAAGGTCATCATGG 60.056 47.826 3.51 0.00 0.00 3.66
294 310 0.620556 AGGTCATCATGGTGGTGGAC 59.379 55.000 6.03 0.00 0.00 4.02
311 327 2.297033 TGGACAGGCATTGCTTTTCTTC 59.703 45.455 8.82 0.00 0.00 2.87
330 348 6.381498 TCTTCTTTACATCCCATTGGTGTA 57.619 37.500 1.20 2.13 31.29 2.90
331 349 6.177610 TCTTCTTTACATCCCATTGGTGTAC 58.822 40.000 5.82 0.00 31.89 2.90
340 358 0.802494 CATTGGTGTACTTCGCCCAC 59.198 55.000 0.00 0.00 45.41 4.61
348 366 1.135344 GTACTTCGCCCACTCAGAGAC 60.135 57.143 3.79 0.00 0.00 3.36
361 379 3.762288 ACTCAGAGACGTATTGCCTTGTA 59.238 43.478 3.79 0.00 0.00 2.41
378 396 7.176490 TGCCTTGTAGCCCTTATTTTAAAGTA 58.824 34.615 0.00 0.00 0.00 2.24
379 397 7.837187 TGCCTTGTAGCCCTTATTTTAAAGTAT 59.163 33.333 0.00 0.00 0.00 2.12
436 454 4.706842 GGCCTCTCCCATACATTCTTTA 57.293 45.455 0.00 0.00 0.00 1.85
438 456 4.822350 GGCCTCTCCCATACATTCTTTAAC 59.178 45.833 0.00 0.00 0.00 2.01
446 464 9.265901 CTCCCATACATTCTTTAACTATGTCTG 57.734 37.037 0.00 0.00 34.55 3.51
488 506 4.772100 ACCATCGATCCCAATTCAAACTTT 59.228 37.500 0.00 0.00 0.00 2.66
492 510 7.816995 CCATCGATCCCAATTCAAACTTTAAAA 59.183 33.333 0.00 0.00 0.00 1.52
495 513 7.014808 TCGATCCCAATTCAAACTTTAAAAGGT 59.985 33.333 0.00 0.00 0.00 3.50
513 531 0.674895 GTGGCGAGCAGATGGACTTT 60.675 55.000 0.00 0.00 0.00 2.66
594 613 1.298190 CGCGCGGTTACTAGAGGAC 60.298 63.158 24.84 0.00 0.00 3.85
605 624 6.183360 CGGTTACTAGAGGACATTTTAGCTCT 60.183 42.308 0.00 0.00 0.00 4.09
611 630 6.305272 AGAGGACATTTTAGCTCTCATTCA 57.695 37.500 0.00 0.00 0.00 2.57
624 643 4.989797 GCTCTCATTCAGTATCCATGAGTG 59.010 45.833 7.97 7.06 43.07 3.51
625 644 5.453057 GCTCTCATTCAGTATCCATGAGTGT 60.453 44.000 7.97 0.00 43.07 3.55
626 645 6.550938 TCTCATTCAGTATCCATGAGTGTT 57.449 37.500 7.97 0.00 43.07 3.32
627 646 6.950842 TCTCATTCAGTATCCATGAGTGTTT 58.049 36.000 7.97 0.00 43.07 2.83
628 647 6.820152 TCTCATTCAGTATCCATGAGTGTTTG 59.180 38.462 7.97 0.00 43.07 2.93
629 648 6.710278 TCATTCAGTATCCATGAGTGTTTGA 58.290 36.000 0.00 0.00 36.23 2.69
630 649 6.820152 TCATTCAGTATCCATGAGTGTTTGAG 59.180 38.462 0.00 0.00 36.23 3.02
631 650 4.507710 TCAGTATCCATGAGTGTTTGAGC 58.492 43.478 0.00 0.00 0.00 4.26
632 651 4.020307 TCAGTATCCATGAGTGTTTGAGCA 60.020 41.667 0.00 0.00 0.00 4.26
633 652 4.093998 CAGTATCCATGAGTGTTTGAGCAC 59.906 45.833 0.00 0.00 39.51 4.40
634 653 1.896220 TCCATGAGTGTTTGAGCACC 58.104 50.000 0.00 0.00 40.04 5.01
635 654 0.883833 CCATGAGTGTTTGAGCACCC 59.116 55.000 0.00 0.00 40.04 4.61
636 655 1.546323 CCATGAGTGTTTGAGCACCCT 60.546 52.381 0.00 0.00 40.04 4.34
637 656 2.290260 CCATGAGTGTTTGAGCACCCTA 60.290 50.000 0.00 0.00 40.04 3.53
638 657 2.543777 TGAGTGTTTGAGCACCCTAC 57.456 50.000 0.00 0.00 40.04 3.18
639 658 1.071699 TGAGTGTTTGAGCACCCTACC 59.928 52.381 0.00 0.00 40.04 3.18
640 659 1.348036 GAGTGTTTGAGCACCCTACCT 59.652 52.381 0.00 0.00 40.04 3.08
641 660 1.774856 AGTGTTTGAGCACCCTACCTT 59.225 47.619 0.00 0.00 40.04 3.50
642 661 2.976882 AGTGTTTGAGCACCCTACCTTA 59.023 45.455 0.00 0.00 40.04 2.69
643 662 3.072211 GTGTTTGAGCACCCTACCTTAC 58.928 50.000 0.00 0.00 33.53 2.34
644 663 2.039348 TGTTTGAGCACCCTACCTTACC 59.961 50.000 0.00 0.00 0.00 2.85
645 664 1.282382 TTGAGCACCCTACCTTACCC 58.718 55.000 0.00 0.00 0.00 3.69
646 665 0.619543 TGAGCACCCTACCTTACCCC 60.620 60.000 0.00 0.00 0.00 4.95
647 666 1.683418 GAGCACCCTACCTTACCCCG 61.683 65.000 0.00 0.00 0.00 5.73
648 667 1.686800 GCACCCTACCTTACCCCGA 60.687 63.158 0.00 0.00 0.00 5.14
649 668 1.964608 GCACCCTACCTTACCCCGAC 61.965 65.000 0.00 0.00 0.00 4.79
650 669 1.380380 ACCCTACCTTACCCCGACG 60.380 63.158 0.00 0.00 0.00 5.12
651 670 1.380380 CCCTACCTTACCCCGACGT 60.380 63.158 0.00 0.00 0.00 4.34
652 671 0.106719 CCCTACCTTACCCCGACGTA 60.107 60.000 0.00 0.00 0.00 3.57
653 672 1.025041 CCTACCTTACCCCGACGTAC 58.975 60.000 0.00 0.00 0.00 3.67
654 673 1.681780 CCTACCTTACCCCGACGTACA 60.682 57.143 0.00 0.00 0.00 2.90
655 674 1.401905 CTACCTTACCCCGACGTACAC 59.598 57.143 0.00 0.00 0.00 2.90
656 675 1.250840 ACCTTACCCCGACGTACACC 61.251 60.000 0.00 0.00 0.00 4.16
657 676 1.250154 CCTTACCCCGACGTACACCA 61.250 60.000 0.00 0.00 0.00 4.17
658 677 0.819582 CTTACCCCGACGTACACCAT 59.180 55.000 0.00 0.00 0.00 3.55
659 678 0.531657 TTACCCCGACGTACACCATG 59.468 55.000 0.00 0.00 0.00 3.66
660 679 0.611618 TACCCCGACGTACACCATGT 60.612 55.000 0.00 0.00 0.00 3.21
661 680 1.294138 CCCCGACGTACACCATGTT 59.706 57.895 0.00 0.00 0.00 2.71
662 681 0.320946 CCCCGACGTACACCATGTTT 60.321 55.000 0.00 0.00 0.00 2.83
663 682 1.515081 CCCGACGTACACCATGTTTT 58.485 50.000 0.00 0.00 0.00 2.43
664 683 1.874872 CCCGACGTACACCATGTTTTT 59.125 47.619 0.00 0.00 0.00 1.94
665 684 2.350007 CCCGACGTACACCATGTTTTTG 60.350 50.000 0.00 0.00 0.00 2.44
666 685 2.288458 CCGACGTACACCATGTTTTTGT 59.712 45.455 0.00 0.00 0.00 2.83
667 686 3.537806 CGACGTACACCATGTTTTTGTC 58.462 45.455 0.00 0.00 0.00 3.18
668 687 3.605231 CGACGTACACCATGTTTTTGTCC 60.605 47.826 0.00 0.00 0.00 4.02
669 688 3.280295 ACGTACACCATGTTTTTGTCCA 58.720 40.909 0.00 0.00 0.00 4.02
670 689 3.314080 ACGTACACCATGTTTTTGTCCAG 59.686 43.478 0.00 0.00 0.00 3.86
671 690 3.314080 CGTACACCATGTTTTTGTCCAGT 59.686 43.478 0.00 0.00 0.00 4.00
672 691 4.201970 CGTACACCATGTTTTTGTCCAGTT 60.202 41.667 0.00 0.00 0.00 3.16
673 692 4.817318 ACACCATGTTTTTGTCCAGTTT 57.183 36.364 0.00 0.00 0.00 2.66
674 693 4.502962 ACACCATGTTTTTGTCCAGTTTG 58.497 39.130 0.00 0.00 0.00 2.93
675 694 4.020662 ACACCATGTTTTTGTCCAGTTTGT 60.021 37.500 0.00 0.00 0.00 2.83
676 695 4.329528 CACCATGTTTTTGTCCAGTTTGTG 59.670 41.667 0.00 0.00 0.00 3.33
685 704 3.379650 CCAGTTTGTGGTCGACTGT 57.620 52.632 16.46 0.00 42.17 3.55
686 705 0.937304 CCAGTTTGTGGTCGACTGTG 59.063 55.000 16.46 2.88 42.17 3.66
687 706 1.472552 CCAGTTTGTGGTCGACTGTGA 60.473 52.381 16.46 0.00 42.17 3.58
688 707 2.276201 CAGTTTGTGGTCGACTGTGAA 58.724 47.619 16.46 3.36 36.81 3.18
689 708 2.675844 CAGTTTGTGGTCGACTGTGAAA 59.324 45.455 16.46 6.96 36.81 2.69
690 709 2.936498 AGTTTGTGGTCGACTGTGAAAG 59.064 45.455 16.46 0.00 0.00 2.62
691 710 2.933906 GTTTGTGGTCGACTGTGAAAGA 59.066 45.455 16.46 0.00 0.00 2.52
692 711 2.971660 TGTGGTCGACTGTGAAAGAA 57.028 45.000 16.46 0.00 0.00 2.52
693 712 3.254470 TGTGGTCGACTGTGAAAGAAA 57.746 42.857 16.46 0.00 0.00 2.52
694 713 3.601435 TGTGGTCGACTGTGAAAGAAAA 58.399 40.909 16.46 0.00 0.00 2.29
695 714 4.004314 TGTGGTCGACTGTGAAAGAAAAA 58.996 39.130 16.46 0.00 0.00 1.94
711 730 2.323999 AAAAATCCCTGACCCATGCA 57.676 45.000 0.00 0.00 0.00 3.96
712 731 2.555732 AAAATCCCTGACCCATGCAT 57.444 45.000 0.00 0.00 0.00 3.96
713 732 1.784358 AAATCCCTGACCCATGCATG 58.216 50.000 20.19 20.19 0.00 4.06
714 733 0.757935 AATCCCTGACCCATGCATGC 60.758 55.000 21.69 11.82 0.00 4.06
715 734 1.652187 ATCCCTGACCCATGCATGCT 61.652 55.000 21.69 8.01 0.00 3.79
716 735 0.987613 TCCCTGACCCATGCATGCTA 60.988 55.000 21.69 5.73 0.00 3.49
717 736 0.111832 CCCTGACCCATGCATGCTAT 59.888 55.000 21.69 8.20 0.00 2.97
718 737 1.352017 CCCTGACCCATGCATGCTATA 59.648 52.381 21.69 6.48 0.00 1.31
719 738 2.025605 CCCTGACCCATGCATGCTATAT 60.026 50.000 21.69 0.44 0.00 0.86
720 739 3.562826 CCCTGACCCATGCATGCTATATT 60.563 47.826 21.69 0.00 0.00 1.28
721 740 4.324486 CCCTGACCCATGCATGCTATATTA 60.324 45.833 21.69 0.00 0.00 0.98
722 741 4.880120 CCTGACCCATGCATGCTATATTAG 59.120 45.833 21.69 11.27 0.00 1.73
740 759 9.847706 CTATATTAGCAGTGTACTAGGACAATG 57.152 37.037 27.41 27.41 45.76 2.82
743 762 2.906354 CAGTGTACTAGGACAATGCCC 58.094 52.381 21.65 3.58 38.43 5.36
744 763 1.838077 AGTGTACTAGGACAATGCCCC 59.162 52.381 10.06 0.00 0.00 5.80
745 764 1.838077 GTGTACTAGGACAATGCCCCT 59.162 52.381 10.06 0.68 36.60 4.79
746 765 1.837439 TGTACTAGGACAATGCCCCTG 59.163 52.381 4.94 0.00 34.11 4.45
747 766 0.837272 TACTAGGACAATGCCCCTGC 59.163 55.000 5.24 0.00 34.11 4.85
748 767 1.524621 CTAGGACAATGCCCCTGCG 60.525 63.158 5.24 0.00 41.78 5.18
749 768 2.257409 CTAGGACAATGCCCCTGCGT 62.257 60.000 5.24 0.00 41.78 5.24
754 773 2.117206 AATGCCCCTGCGTTGGAA 59.883 55.556 0.00 0.00 44.90 3.53
755 774 1.978617 AATGCCCCTGCGTTGGAAG 60.979 57.895 0.00 0.00 44.90 3.46
756 775 3.944250 ATGCCCCTGCGTTGGAAGG 62.944 63.158 0.00 0.00 41.78 3.46
759 778 4.697756 CCCTGCGTTGGAAGGCGA 62.698 66.667 0.00 0.00 42.35 5.54
760 779 2.436646 CCTGCGTTGGAAGGCGAT 60.437 61.111 0.00 0.00 42.35 4.58
761 780 1.153449 CCTGCGTTGGAAGGCGATA 60.153 57.895 0.00 0.00 42.35 2.92
762 781 0.532862 CCTGCGTTGGAAGGCGATAT 60.533 55.000 0.00 0.00 42.35 1.63
763 782 1.270094 CCTGCGTTGGAAGGCGATATA 60.270 52.381 0.00 0.00 42.35 0.86
764 783 2.479837 CTGCGTTGGAAGGCGATATAA 58.520 47.619 0.00 0.00 42.35 0.98
765 784 2.869801 CTGCGTTGGAAGGCGATATAAA 59.130 45.455 0.00 0.00 42.35 1.40
766 785 3.472652 TGCGTTGGAAGGCGATATAAAT 58.527 40.909 0.00 0.00 42.35 1.40
767 786 4.633175 TGCGTTGGAAGGCGATATAAATA 58.367 39.130 0.00 0.00 42.35 1.40
768 787 5.242434 TGCGTTGGAAGGCGATATAAATAT 58.758 37.500 0.00 0.00 42.35 1.28
769 788 5.703592 TGCGTTGGAAGGCGATATAAATATT 59.296 36.000 0.00 0.00 42.35 1.28
770 789 6.128391 TGCGTTGGAAGGCGATATAAATATTC 60.128 38.462 0.00 0.00 42.35 1.75
771 790 6.092259 GCGTTGGAAGGCGATATAAATATTCT 59.908 38.462 0.00 0.00 0.00 2.40
772 791 7.277098 GCGTTGGAAGGCGATATAAATATTCTA 59.723 37.037 0.00 0.00 0.00 2.10
773 792 8.808529 CGTTGGAAGGCGATATAAATATTCTAG 58.191 37.037 0.00 0.00 0.00 2.43
774 793 9.654663 GTTGGAAGGCGATATAAATATTCTAGT 57.345 33.333 0.00 0.00 0.00 2.57
777 796 9.448294 GGAAGGCGATATAAATATTCTAGTACG 57.552 37.037 0.00 0.00 0.00 3.67
794 813 8.970691 TCTAGTACGTTAACTTGTGATTTACC 57.029 34.615 3.71 0.00 0.00 2.85
795 814 8.796475 TCTAGTACGTTAACTTGTGATTTACCT 58.204 33.333 3.71 0.00 0.00 3.08
796 815 7.647907 AGTACGTTAACTTGTGATTTACCTG 57.352 36.000 3.71 0.00 0.00 4.00
797 816 5.352643 ACGTTAACTTGTGATTTACCTGC 57.647 39.130 3.71 0.00 0.00 4.85
798 817 4.214758 ACGTTAACTTGTGATTTACCTGCC 59.785 41.667 3.71 0.00 0.00 4.85
799 818 4.379082 CGTTAACTTGTGATTTACCTGCCC 60.379 45.833 3.71 0.00 0.00 5.36
800 819 2.969821 ACTTGTGATTTACCTGCCCA 57.030 45.000 0.00 0.00 0.00 5.36
801 820 3.456380 ACTTGTGATTTACCTGCCCAT 57.544 42.857 0.00 0.00 0.00 4.00
802 821 4.584638 ACTTGTGATTTACCTGCCCATA 57.415 40.909 0.00 0.00 0.00 2.74
803 822 5.129368 ACTTGTGATTTACCTGCCCATAT 57.871 39.130 0.00 0.00 0.00 1.78
804 823 5.518865 ACTTGTGATTTACCTGCCCATATT 58.481 37.500 0.00 0.00 0.00 1.28
805 824 6.668645 ACTTGTGATTTACCTGCCCATATTA 58.331 36.000 0.00 0.00 0.00 0.98
806 825 7.122715 ACTTGTGATTTACCTGCCCATATTAA 58.877 34.615 0.00 0.00 0.00 1.40
807 826 7.784550 ACTTGTGATTTACCTGCCCATATTAAT 59.215 33.333 0.00 0.00 0.00 1.40
808 827 7.523293 TGTGATTTACCTGCCCATATTAATG 57.477 36.000 0.00 0.00 0.00 1.90
809 828 7.066142 TGTGATTTACCTGCCCATATTAATGT 58.934 34.615 0.00 0.00 0.00 2.71
810 829 7.014134 TGTGATTTACCTGCCCATATTAATGTG 59.986 37.037 5.27 5.27 0.00 3.21
811 830 7.230510 GTGATTTACCTGCCCATATTAATGTGA 59.769 37.037 13.30 0.00 0.00 3.58
812 831 7.949565 TGATTTACCTGCCCATATTAATGTGAT 59.050 33.333 13.30 0.00 0.00 3.06
813 832 8.725606 ATTTACCTGCCCATATTAATGTGATT 57.274 30.769 13.30 0.00 0.00 2.57
814 833 7.523293 TTACCTGCCCATATTAATGTGATTG 57.477 36.000 13.30 3.53 0.00 2.67
815 834 5.457686 ACCTGCCCATATTAATGTGATTGT 58.542 37.500 13.30 1.58 0.00 2.71
816 835 5.302568 ACCTGCCCATATTAATGTGATTGTG 59.697 40.000 13.30 2.56 0.00 3.33
817 836 5.302568 CCTGCCCATATTAATGTGATTGTGT 59.697 40.000 13.30 0.00 0.00 3.72
818 837 6.489700 CCTGCCCATATTAATGTGATTGTGTA 59.510 38.462 13.30 0.00 0.00 2.90
819 838 7.014134 CCTGCCCATATTAATGTGATTGTGTAA 59.986 37.037 13.30 0.00 0.00 2.41
820 839 8.298729 TGCCCATATTAATGTGATTGTGTAAA 57.701 30.769 13.30 0.00 0.00 2.01
821 840 8.922237 TGCCCATATTAATGTGATTGTGTAAAT 58.078 29.630 13.30 0.00 0.00 1.40
850 869 5.476091 TTTTTCAATCCTGCCCGTAATTT 57.524 34.783 0.00 0.00 0.00 1.82
851 870 6.591750 TTTTTCAATCCTGCCCGTAATTTA 57.408 33.333 0.00 0.00 0.00 1.40
852 871 5.828299 TTTCAATCCTGCCCGTAATTTAG 57.172 39.130 0.00 0.00 0.00 1.85
853 872 3.211045 TCAATCCTGCCCGTAATTTAGC 58.789 45.455 0.00 0.00 0.00 3.09
854 873 3.118038 TCAATCCTGCCCGTAATTTAGCT 60.118 43.478 0.00 0.00 0.00 3.32
855 874 3.577805 ATCCTGCCCGTAATTTAGCTT 57.422 42.857 0.00 0.00 0.00 3.74
856 875 4.699925 ATCCTGCCCGTAATTTAGCTTA 57.300 40.909 0.00 0.00 0.00 3.09
857 876 4.699925 TCCTGCCCGTAATTTAGCTTAT 57.300 40.909 0.00 0.00 0.00 1.73
858 877 5.811796 TCCTGCCCGTAATTTAGCTTATA 57.188 39.130 0.00 0.00 0.00 0.98
859 878 6.368779 TCCTGCCCGTAATTTAGCTTATAT 57.631 37.500 0.00 0.00 0.00 0.86
860 879 6.775708 TCCTGCCCGTAATTTAGCTTATATT 58.224 36.000 0.00 0.00 0.00 1.28
861 880 7.228590 TCCTGCCCGTAATTTAGCTTATATTT 58.771 34.615 0.00 0.00 0.00 1.40
862 881 7.722285 TCCTGCCCGTAATTTAGCTTATATTTT 59.278 33.333 0.00 0.00 0.00 1.82
863 882 7.807907 CCTGCCCGTAATTTAGCTTATATTTTG 59.192 37.037 0.00 0.00 0.00 2.44
864 883 8.453238 TGCCCGTAATTTAGCTTATATTTTGA 57.547 30.769 0.00 0.00 0.00 2.69
865 884 8.564574 TGCCCGTAATTTAGCTTATATTTTGAG 58.435 33.333 0.00 0.00 0.00 3.02
866 885 8.021396 GCCCGTAATTTAGCTTATATTTTGAGG 58.979 37.037 0.00 0.00 0.00 3.86
867 886 9.280174 CCCGTAATTTAGCTTATATTTTGAGGA 57.720 33.333 0.00 0.00 0.00 3.71
877 896 9.692325 AGCTTATATTTTGAGGAGAAGTTTGAT 57.308 29.630 0.00 0.00 0.00 2.57
887 906 8.833231 TGAGGAGAAGTTTGATAAGTAAACTG 57.167 34.615 4.13 0.00 44.98 3.16
888 907 8.647796 TGAGGAGAAGTTTGATAAGTAAACTGA 58.352 33.333 4.13 0.00 44.98 3.41
889 908 9.490379 GAGGAGAAGTTTGATAAGTAAACTGAA 57.510 33.333 4.13 0.00 44.98 3.02
890 909 9.495572 AGGAGAAGTTTGATAAGTAAACTGAAG 57.504 33.333 4.13 0.00 44.98 3.02
891 910 9.274206 GGAGAAGTTTGATAAGTAAACTGAAGT 57.726 33.333 4.13 0.00 44.98 3.01
893 912 9.832445 AGAAGTTTGATAAGTAAACTGAAGTGA 57.168 29.630 4.13 0.00 44.98 3.41
896 915 9.614792 AGTTTGATAAGTAAACTGAAGTGAAGT 57.385 29.630 0.00 0.00 44.29 3.01
899 918 9.607988 TTGATAAGTAAACTGAAGTGAAGTTGA 57.392 29.630 0.00 0.00 37.90 3.18
900 919 9.042008 TGATAAGTAAACTGAAGTGAAGTTGAC 57.958 33.333 0.00 0.00 38.73 3.18
901 920 9.262358 GATAAGTAAACTGAAGTGAAGTTGACT 57.738 33.333 1.22 1.22 46.87 3.41
902 921 7.541122 AAGTAAACTGAAGTGAAGTTGACTC 57.459 36.000 6.75 0.00 45.02 3.36
903 922 6.640518 AGTAAACTGAAGTGAAGTTGACTCA 58.359 36.000 0.00 0.00 43.15 3.41
904 923 6.758886 AGTAAACTGAAGTGAAGTTGACTCAG 59.241 38.462 15.18 15.18 43.15 3.35
905 924 5.344743 AACTGAAGTGAAGTTGACTCAGA 57.655 39.130 20.22 0.47 36.52 3.27
906 925 5.344743 ACTGAAGTGAAGTTGACTCAGAA 57.655 39.130 20.22 0.00 0.00 3.02
907 926 5.355596 ACTGAAGTGAAGTTGACTCAGAAG 58.644 41.667 20.22 9.22 0.00 2.85
908 927 4.697514 TGAAGTGAAGTTGACTCAGAAGG 58.302 43.478 0.00 0.00 0.00 3.46
909 928 4.162320 TGAAGTGAAGTTGACTCAGAAGGT 59.838 41.667 0.00 0.00 0.00 3.50
910 929 5.362717 TGAAGTGAAGTTGACTCAGAAGGTA 59.637 40.000 0.00 0.00 0.00 3.08
911 930 5.871396 AGTGAAGTTGACTCAGAAGGTAA 57.129 39.130 0.00 0.00 0.00 2.85
912 931 5.848406 AGTGAAGTTGACTCAGAAGGTAAG 58.152 41.667 0.00 0.00 0.00 2.34
913 932 4.991687 GTGAAGTTGACTCAGAAGGTAAGG 59.008 45.833 0.00 0.00 0.00 2.69
914 933 4.899457 TGAAGTTGACTCAGAAGGTAAGGA 59.101 41.667 0.00 0.00 0.00 3.36
915 934 5.365605 TGAAGTTGACTCAGAAGGTAAGGAA 59.634 40.000 0.00 0.00 0.00 3.36
916 935 5.888982 AGTTGACTCAGAAGGTAAGGAAA 57.111 39.130 0.00 0.00 0.00 3.13
917 936 5.859495 AGTTGACTCAGAAGGTAAGGAAAG 58.141 41.667 0.00 0.00 0.00 2.62
918 937 5.367060 AGTTGACTCAGAAGGTAAGGAAAGT 59.633 40.000 0.00 0.00 0.00 2.66
919 938 6.553852 AGTTGACTCAGAAGGTAAGGAAAGTA 59.446 38.462 0.00 0.00 0.00 2.24
920 939 6.989155 TGACTCAGAAGGTAAGGAAAGTAA 57.011 37.500 0.00 0.00 0.00 2.24
921 940 6.994221 TGACTCAGAAGGTAAGGAAAGTAAG 58.006 40.000 0.00 0.00 0.00 2.34
922 941 6.553852 TGACTCAGAAGGTAAGGAAAGTAAGT 59.446 38.462 0.00 0.00 0.00 2.24
923 942 7.727186 TGACTCAGAAGGTAAGGAAAGTAAGTA 59.273 37.037 0.00 0.00 0.00 2.24
924 943 8.124808 ACTCAGAAGGTAAGGAAAGTAAGTAG 57.875 38.462 0.00 0.00 0.00 2.57
925 944 7.729431 ACTCAGAAGGTAAGGAAAGTAAGTAGT 59.271 37.037 0.00 0.00 0.00 2.73
926 945 9.240734 CTCAGAAGGTAAGGAAAGTAAGTAGTA 57.759 37.037 0.00 0.00 0.00 1.82
927 946 9.765295 TCAGAAGGTAAGGAAAGTAAGTAGTAT 57.235 33.333 0.00 0.00 0.00 2.12
949 968 9.750783 AGTATATAGAGGTATGTTTGTCCGTAT 57.249 33.333 0.00 0.00 0.00 3.06
954 973 5.128171 AGAGGTATGTTTGTCCGTATTGCTA 59.872 40.000 0.00 0.00 0.00 3.49
955 974 5.925509 AGGTATGTTTGTCCGTATTGCTAT 58.074 37.500 0.00 0.00 0.00 2.97
967 986 8.995220 TGTCCGTATTGCTATATTAATTTGACC 58.005 33.333 0.00 0.00 0.00 4.02
983 1002 7.510675 AATTTGACCCTCTCTACCTGAATAA 57.489 36.000 0.00 0.00 0.00 1.40
984 1003 7.698163 ATTTGACCCTCTCTACCTGAATAAT 57.302 36.000 0.00 0.00 0.00 1.28
985 1004 6.732896 TTGACCCTCTCTACCTGAATAATC 57.267 41.667 0.00 0.00 0.00 1.75
986 1005 4.827835 TGACCCTCTCTACCTGAATAATCG 59.172 45.833 0.00 0.00 0.00 3.34
1007 1026 5.541845 TCGTATGCAGAGGGAAATGAATAG 58.458 41.667 0.61 0.00 0.00 1.73
1009 1028 5.636965 CGTATGCAGAGGGAAATGAATAGAG 59.363 44.000 0.00 0.00 0.00 2.43
1025 1044 1.831580 AGAGCCATGGAAGAACAAGC 58.168 50.000 18.40 0.00 0.00 4.01
1040 1059 3.904136 ACAAGCATGCAGAAACTACAC 57.096 42.857 21.98 0.00 0.00 2.90
1046 1065 3.370366 GCATGCAGAAACTACACAGAGAG 59.630 47.826 14.21 0.00 0.00 3.20
1058 1077 4.000331 ACACAGAGAGTTGGATCAACAG 58.000 45.455 12.46 1.29 45.66 3.16
1059 1078 3.389329 ACACAGAGAGTTGGATCAACAGT 59.611 43.478 12.46 0.11 45.66 3.55
1060 1079 4.588951 ACACAGAGAGTTGGATCAACAGTA 59.411 41.667 12.46 0.00 45.66 2.74
1065 1084 7.397476 ACAGAGAGTTGGATCAACAGTAATCTA 59.603 37.037 12.46 0.00 45.66 1.98
1066 1085 7.920151 CAGAGAGTTGGATCAACAGTAATCTAG 59.080 40.741 12.46 0.00 45.66 2.43
1071 1090 6.235231 TGGATCAACAGTAATCTAGAACCC 57.765 41.667 0.00 0.00 0.00 4.11
1080 1099 6.109359 CAGTAATCTAGAACCCAGGAACAAG 58.891 44.000 0.00 0.00 0.00 3.16
1081 1100 4.576330 AATCTAGAACCCAGGAACAAGG 57.424 45.455 0.00 0.00 0.00 3.61
1082 1101 1.628846 TCTAGAACCCAGGAACAAGGC 59.371 52.381 0.00 0.00 0.00 4.35
1084 1103 0.111253 AGAACCCAGGAACAAGGCAG 59.889 55.000 0.00 0.00 0.00 4.85
1089 1108 1.672356 CAGGAACAAGGCAGACCGG 60.672 63.158 0.00 0.00 42.76 5.28
1128 1147 2.493278 GGTGGCAGCTGTGTTTATGATT 59.507 45.455 16.64 0.00 0.00 2.57
1201 1220 2.443632 AGATATGGAGTCGAGGGAGTGA 59.556 50.000 0.00 0.00 0.00 3.41
1207 1226 2.882137 GGAGTCGAGGGAGTGATCTTAG 59.118 54.545 0.00 0.00 0.00 2.18
1236 1255 3.845860 TCCACTTCTCTCCTACACACTT 58.154 45.455 0.00 0.00 0.00 3.16
1268 1347 2.002586 GCAGCAGCTAATCAAGAACGA 58.997 47.619 0.00 0.00 37.91 3.85
1275 1354 5.915196 GCAGCTAATCAAGAACGAACTTTTT 59.085 36.000 0.00 0.00 0.00 1.94
1285 1364 5.667466 AGAACGAACTTTTTCTAGTGTGGA 58.333 37.500 0.00 0.00 30.01 4.02
1307 1386 2.733227 CGATGTTTCTGGCCATGCTTTC 60.733 50.000 5.51 0.00 0.00 2.62
1342 1421 3.895232 ACGCAATATCAGTCCAGAAGT 57.105 42.857 0.00 0.00 0.00 3.01
1366 1448 1.800586 GCGAGAACAGCACAATGAAGA 59.199 47.619 0.00 0.00 34.19 2.87
1370 1452 4.391216 CGAGAACAGCACAATGAAGATCTT 59.609 41.667 7.95 7.95 0.00 2.40
1374 1456 5.779529 ACAGCACAATGAAGATCTTTTGT 57.220 34.783 16.42 16.42 0.00 2.83
1409 1491 1.696063 ATGTTCTACATGGGCATGGC 58.304 50.000 11.56 11.56 42.91 4.40
1415 1497 1.610522 CTACATGGGCATGGCTTTAGC 59.389 52.381 19.78 2.17 42.91 3.09
1426 1508 1.132640 GCTTTAGCCAGCGTTGACG 59.867 57.895 0.00 0.00 37.48 4.35
1427 1509 1.289109 GCTTTAGCCAGCGTTGACGA 61.289 55.000 7.85 0.00 36.90 4.20
1436 1518 2.237751 GCGTTGACGATGCCGCTAT 61.238 57.895 7.85 0.00 42.66 2.97
1441 1523 2.016704 GACGATGCCGCTATGGACG 61.017 63.158 0.00 0.00 42.00 4.79
1448 1530 1.152383 GCCGCTATGGACGTTCTTCC 61.152 60.000 0.00 0.00 42.00 3.46
1459 1541 1.355796 CGTTCTTCCGCGCATTGGTA 61.356 55.000 8.75 0.00 0.00 3.25
1460 1542 0.096454 GTTCTTCCGCGCATTGGTAC 59.904 55.000 8.75 0.00 0.00 3.34
1480 1562 7.166851 TGGTACAATCACGACCCTTATTTTTA 58.833 34.615 0.00 0.00 31.92 1.52
1481 1563 7.119553 TGGTACAATCACGACCCTTATTTTTAC 59.880 37.037 0.00 0.00 31.92 2.01
1482 1564 7.119553 GGTACAATCACGACCCTTATTTTTACA 59.880 37.037 0.00 0.00 0.00 2.41
1483 1565 7.513371 ACAATCACGACCCTTATTTTTACAA 57.487 32.000 0.00 0.00 0.00 2.41
1490 1572 6.071051 ACGACCCTTATTTTTACAATGGCATT 60.071 34.615 6.96 6.96 0.00 3.56
1495 1577 6.037391 CCTTATTTTTACAATGGCATTGGCAG 59.963 38.462 35.77 20.72 44.42 4.85
1504 1586 1.300963 GCATTGGCAGGGAGAGTCA 59.699 57.895 0.00 0.00 40.72 3.41
1507 1589 2.022195 CATTGGCAGGGAGAGTCAATG 58.978 52.381 6.17 6.17 38.76 2.82
1512 1594 1.406614 GCAGGGAGAGTCAATGGACAG 60.407 57.143 2.34 0.00 46.80 3.51
1518 1600 1.905215 AGAGTCAATGGACAGTGGGAG 59.095 52.381 2.34 0.00 46.80 4.30
1603 1685 3.357079 GTGAGCACCAACCCAGCG 61.357 66.667 0.00 0.00 0.00 5.18
1607 1689 4.424566 GCACCAACCCAGCGCATG 62.425 66.667 11.47 4.88 0.00 4.06
1635 1717 0.984230 CCCGTACCATGCAGGGATAT 59.016 55.000 26.87 3.95 46.64 1.63
1637 1719 2.168521 CCCGTACCATGCAGGGATATAG 59.831 54.545 26.87 10.00 46.64 1.31
1665 1756 4.379813 CCTGTTCTCATACACAATGCAACC 60.380 45.833 0.00 0.00 35.38 3.77
1690 1787 5.283457 AGATAGTCCAATAACACTGGAGC 57.717 43.478 0.00 0.00 43.68 4.70
1739 1839 2.029020 TGTCATCTTCCAACAGTCCTCG 60.029 50.000 0.00 0.00 0.00 4.63
1743 1843 5.067413 GTCATCTTCCAACAGTCCTCGTATA 59.933 44.000 0.00 0.00 0.00 1.47
1761 1861 5.051173 TCGTATACGTCGTCTCAAAGATCTC 60.051 44.000 23.67 0.00 40.80 2.75
1821 1921 2.271944 ACTTTGGCTACAGTTGTCCC 57.728 50.000 0.00 0.00 0.00 4.46
1824 1924 0.320374 TTGGCTACAGTTGTCCCGAG 59.680 55.000 0.00 0.00 0.00 4.63
1884 1984 1.065401 CTGCTGCAAACGGAACAAGAA 59.935 47.619 3.02 0.00 0.00 2.52
2045 2145 3.740115 CTGTGGGTACATGGGCTATTAC 58.260 50.000 0.00 0.00 35.97 1.89
2199 2306 4.563580 GCCTCTGACTGGTCAAAAGTATCA 60.564 45.833 4.94 0.00 39.39 2.15
2362 2469 4.225497 CCAGTTCTTGGGATCGGC 57.775 61.111 0.00 0.00 43.75 5.54
2447 2554 1.421410 GCAGTCGCACGGGTTATCAG 61.421 60.000 0.00 0.00 38.36 2.90
2478 2585 4.154176 TCAATGGGCATCTATCAAATGGG 58.846 43.478 0.00 0.00 0.00 4.00
2486 2593 4.659115 CATCTATCAAATGGGGCATCAGA 58.341 43.478 0.00 0.00 0.00 3.27
2506 2616 3.620374 AGAATTGATGAGACACGACATGC 59.380 43.478 0.00 0.00 0.00 4.06
2507 2617 2.453983 TTGATGAGACACGACATGCA 57.546 45.000 0.00 0.00 0.00 3.96
2512 2622 3.799281 TGAGACACGACATGCATGATA 57.201 42.857 32.75 5.28 0.00 2.15
2513 2623 3.709987 TGAGACACGACATGCATGATAG 58.290 45.455 32.75 22.61 0.00 2.08
2517 2627 1.797046 CACGACATGCATGATAGGCTC 59.203 52.381 32.75 16.98 0.00 4.70
2543 2653 2.219458 GGCATGTCAGACTGATGATGG 58.781 52.381 20.67 8.17 0.00 3.51
2556 2666 5.431765 ACTGATGATGGATTTACACTCACC 58.568 41.667 0.00 0.00 0.00 4.02
2557 2667 5.045651 ACTGATGATGGATTTACACTCACCA 60.046 40.000 0.00 0.00 35.09 4.17
2562 2672 4.431416 TGGATTTACACTCACCAACAGT 57.569 40.909 0.00 0.00 0.00 3.55
2604 2714 3.135225 GACTAGCTACTGCGAGATCTCA 58.865 50.000 22.31 3.74 43.23 3.27
3556 3694 1.132643 CAGATTCTTGGCTTGCAGCTC 59.867 52.381 7.85 0.65 41.99 4.09
3590 3728 4.131088 GACCCAGTCGACGGAGGC 62.131 72.222 22.53 7.64 0.00 4.70
3812 3950 2.288666 GGTGACGATGCCATAATGTGT 58.711 47.619 0.00 0.00 0.00 3.72
3819 3957 4.217334 ACGATGCCATAATGTGTTTTGTGA 59.783 37.500 0.00 0.00 0.00 3.58
3964 4102 6.630413 GCATTATGGTCTTGAGAGGTCTGTTA 60.630 42.308 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.567776 TCACCAATTACTACAAATCTCTTTTCA 57.432 29.630 0.00 0.00 0.00 2.69
31 32 5.491982 GAAGGTCAGGAATAGCTCAAAAGA 58.508 41.667 0.00 0.00 0.00 2.52
42 44 2.432510 GAGTGGATCGAAGGTCAGGAAT 59.567 50.000 0.00 0.00 0.00 3.01
60 62 2.975489 AGTCATCAACAAGGTGAGGAGT 59.025 45.455 2.31 3.44 38.87 3.85
62 64 5.560722 TTTAGTCATCAACAAGGTGAGGA 57.439 39.130 0.00 0.00 36.05 3.71
68 70 6.449698 AGTGCATTTTTAGTCATCAACAAGG 58.550 36.000 0.00 0.00 0.00 3.61
76 78 5.106157 CGGGAAGAAGTGCATTTTTAGTCAT 60.106 40.000 0.00 0.00 0.00 3.06
77 79 4.215399 CGGGAAGAAGTGCATTTTTAGTCA 59.785 41.667 0.00 0.00 0.00 3.41
88 90 0.599204 TTCGACACGGGAAGAAGTGC 60.599 55.000 0.00 0.00 41.72 4.40
100 102 3.889196 TTAGTTGCCAATGTTCGACAC 57.111 42.857 0.00 0.00 0.00 3.67
107 109 8.121305 TGATACTTTCAATTAGTTGCCAATGT 57.879 30.769 0.00 0.00 35.26 2.71
124 126 8.554490 AGGGAGACAGTAATACATGATACTTT 57.446 34.615 0.00 0.00 30.09 2.66
154 156 4.537135 AAGATCTAAAGCCGACTTCACA 57.463 40.909 0.00 0.00 34.05 3.58
155 157 4.093556 CCAAAGATCTAAAGCCGACTTCAC 59.906 45.833 0.00 0.00 34.05 3.18
195 197 4.344679 AGATTGCATGTGTTTTGGGAGAAA 59.655 37.500 0.00 0.00 0.00 2.52
201 203 4.873817 TGAGAAGATTGCATGTGTTTTGG 58.126 39.130 0.00 0.00 0.00 3.28
207 209 8.920509 TCAATTTAATGAGAAGATTGCATGTG 57.079 30.769 0.00 0.00 0.00 3.21
254 256 5.067153 ACCTTGAGACTCACATCTTATCTCG 59.933 44.000 4.15 0.00 38.93 4.04
274 276 1.004745 GTCCACCACCATGATGACCTT 59.995 52.381 0.00 0.00 0.00 3.50
286 302 1.181098 AAGCAATGCCTGTCCACCAC 61.181 55.000 0.00 0.00 0.00 4.16
294 310 5.531634 TGTAAAGAAGAAAAGCAATGCCTG 58.468 37.500 0.00 0.00 0.00 4.85
311 327 5.064707 CGAAGTACACCAATGGGATGTAAAG 59.935 44.000 3.55 0.00 38.05 1.85
330 348 1.867919 CGTCTCTGAGTGGGCGAAGT 61.868 60.000 4.32 0.00 0.00 3.01
331 349 1.153939 CGTCTCTGAGTGGGCGAAG 60.154 63.158 4.32 0.00 0.00 3.79
340 358 3.238108 ACAAGGCAATACGTCTCTGAG 57.762 47.619 0.00 0.00 0.00 3.35
348 366 2.038387 AAGGGCTACAAGGCAATACG 57.962 50.000 2.75 0.00 43.44 3.06
378 396 6.235231 ACACCGTACCTATTCAAAGATGAT 57.765 37.500 0.00 0.00 34.96 2.45
379 397 5.670792 ACACCGTACCTATTCAAAGATGA 57.329 39.130 0.00 0.00 0.00 2.92
436 454 3.084786 GGAAGGCTTTGCAGACATAGTT 58.915 45.455 0.00 0.00 0.00 2.24
438 456 2.019984 GGGAAGGCTTTGCAGACATAG 58.980 52.381 0.00 0.00 0.00 2.23
446 464 4.056125 GCACCGGGAAGGCTTTGC 62.056 66.667 6.32 2.76 46.52 3.68
471 489 7.387673 CCACCTTTTAAAGTTTGAATTGGGATC 59.612 37.037 3.91 0.00 0.00 3.36
472 490 7.223584 CCACCTTTTAAAGTTTGAATTGGGAT 58.776 34.615 3.91 0.00 0.00 3.85
473 491 6.587273 CCACCTTTTAAAGTTTGAATTGGGA 58.413 36.000 3.91 0.00 0.00 4.37
474 492 5.238432 GCCACCTTTTAAAGTTTGAATTGGG 59.762 40.000 3.91 9.88 0.00 4.12
488 506 1.678728 CCATCTGCTCGCCACCTTTTA 60.679 52.381 0.00 0.00 0.00 1.52
492 510 2.685017 TCCATCTGCTCGCCACCT 60.685 61.111 0.00 0.00 0.00 4.00
495 513 0.036732 AAAAGTCCATCTGCTCGCCA 59.963 50.000 0.00 0.00 0.00 5.69
579 598 4.507021 GCTAAAATGTCCTCTAGTAACCGC 59.493 45.833 0.00 0.00 0.00 5.68
587 606 7.124901 ACTGAATGAGAGCTAAAATGTCCTCTA 59.875 37.037 0.00 0.00 34.98 2.43
594 613 8.504815 CATGGATACTGAATGAGAGCTAAAATG 58.495 37.037 0.00 0.00 37.61 2.32
605 624 6.710278 TCAAACACTCATGGATACTGAATGA 58.290 36.000 0.00 0.00 37.61 2.57
611 630 4.256920 GTGCTCAAACACTCATGGATACT 58.743 43.478 0.00 0.00 37.58 2.12
624 643 2.617276 GGGTAAGGTAGGGTGCTCAAAC 60.617 54.545 0.00 0.00 0.00 2.93
625 644 1.631898 GGGTAAGGTAGGGTGCTCAAA 59.368 52.381 0.00 0.00 0.00 2.69
626 645 1.282382 GGGTAAGGTAGGGTGCTCAA 58.718 55.000 0.00 0.00 0.00 3.02
627 646 0.619543 GGGGTAAGGTAGGGTGCTCA 60.620 60.000 0.00 0.00 0.00 4.26
628 647 1.683418 CGGGGTAAGGTAGGGTGCTC 61.683 65.000 0.00 0.00 0.00 4.26
629 648 1.688187 CGGGGTAAGGTAGGGTGCT 60.688 63.158 0.00 0.00 0.00 4.40
630 649 1.686800 TCGGGGTAAGGTAGGGTGC 60.687 63.158 0.00 0.00 0.00 5.01
631 650 1.669999 CGTCGGGGTAAGGTAGGGTG 61.670 65.000 0.00 0.00 0.00 4.61
632 651 1.380380 CGTCGGGGTAAGGTAGGGT 60.380 63.158 0.00 0.00 0.00 4.34
633 652 0.106719 TACGTCGGGGTAAGGTAGGG 60.107 60.000 0.00 0.00 0.00 3.53
634 653 1.025041 GTACGTCGGGGTAAGGTAGG 58.975 60.000 0.00 0.00 0.00 3.18
635 654 1.401905 GTGTACGTCGGGGTAAGGTAG 59.598 57.143 0.00 0.00 0.00 3.18
636 655 1.459450 GTGTACGTCGGGGTAAGGTA 58.541 55.000 0.00 0.00 0.00 3.08
637 656 1.250840 GGTGTACGTCGGGGTAAGGT 61.251 60.000 0.00 0.00 0.00 3.50
638 657 1.250154 TGGTGTACGTCGGGGTAAGG 61.250 60.000 0.00 0.00 0.00 2.69
639 658 0.819582 ATGGTGTACGTCGGGGTAAG 59.180 55.000 0.00 0.00 0.00 2.34
640 659 0.531657 CATGGTGTACGTCGGGGTAA 59.468 55.000 0.00 0.00 0.00 2.85
641 660 0.611618 ACATGGTGTACGTCGGGGTA 60.612 55.000 0.00 0.00 0.00 3.69
642 661 1.474332 AACATGGTGTACGTCGGGGT 61.474 55.000 0.00 0.00 0.00 4.95
643 662 0.320946 AAACATGGTGTACGTCGGGG 60.321 55.000 0.00 0.00 0.00 5.73
644 663 1.515081 AAAACATGGTGTACGTCGGG 58.485 50.000 0.00 0.00 0.00 5.14
645 664 2.288458 ACAAAAACATGGTGTACGTCGG 59.712 45.455 0.00 0.00 0.00 4.79
646 665 3.537806 GACAAAAACATGGTGTACGTCG 58.462 45.455 0.00 0.00 0.00 5.12
647 666 3.312973 TGGACAAAAACATGGTGTACGTC 59.687 43.478 0.00 0.00 0.00 4.34
648 667 3.280295 TGGACAAAAACATGGTGTACGT 58.720 40.909 0.00 0.00 0.00 3.57
649 668 3.314080 ACTGGACAAAAACATGGTGTACG 59.686 43.478 0.00 0.00 0.00 3.67
650 669 4.911514 ACTGGACAAAAACATGGTGTAC 57.088 40.909 0.00 0.00 0.00 2.90
651 670 5.186021 ACAAACTGGACAAAAACATGGTGTA 59.814 36.000 0.00 0.00 0.00 2.90
652 671 4.020662 ACAAACTGGACAAAAACATGGTGT 60.021 37.500 0.00 0.00 0.00 4.16
653 672 4.329528 CACAAACTGGACAAAAACATGGTG 59.670 41.667 0.00 0.00 0.00 4.17
654 673 4.502962 CACAAACTGGACAAAAACATGGT 58.497 39.130 0.00 0.00 0.00 3.55
655 674 3.870419 CCACAAACTGGACAAAAACATGG 59.130 43.478 0.00 0.00 43.95 3.66
656 675 4.502962 ACCACAAACTGGACAAAAACATG 58.497 39.130 0.00 0.00 43.95 3.21
657 676 4.676723 CGACCACAAACTGGACAAAAACAT 60.677 41.667 0.00 0.00 43.95 2.71
658 677 3.366476 CGACCACAAACTGGACAAAAACA 60.366 43.478 0.00 0.00 43.95 2.83
659 678 3.119779 TCGACCACAAACTGGACAAAAAC 60.120 43.478 0.00 0.00 43.95 2.43
660 679 3.082548 TCGACCACAAACTGGACAAAAA 58.917 40.909 0.00 0.00 43.95 1.94
661 680 2.420722 GTCGACCACAAACTGGACAAAA 59.579 45.455 3.51 0.00 43.95 2.44
662 681 2.011222 GTCGACCACAAACTGGACAAA 58.989 47.619 3.51 0.00 43.95 2.83
663 682 1.208535 AGTCGACCACAAACTGGACAA 59.791 47.619 13.01 0.00 43.95 3.18
664 683 0.828022 AGTCGACCACAAACTGGACA 59.172 50.000 13.01 0.00 43.95 4.02
665 684 1.217882 CAGTCGACCACAAACTGGAC 58.782 55.000 13.01 0.00 43.95 4.02
666 685 0.828022 ACAGTCGACCACAAACTGGA 59.172 50.000 13.01 0.00 43.95 3.86
668 687 1.934589 TCACAGTCGACCACAAACTG 58.065 50.000 13.01 4.45 44.68 3.16
669 688 2.684001 TTCACAGTCGACCACAAACT 57.316 45.000 13.01 0.00 0.00 2.66
670 689 2.933906 TCTTTCACAGTCGACCACAAAC 59.066 45.455 13.01 0.00 0.00 2.93
671 690 3.254470 TCTTTCACAGTCGACCACAAA 57.746 42.857 13.01 5.74 0.00 2.83
672 691 2.971660 TCTTTCACAGTCGACCACAA 57.028 45.000 13.01 0.00 0.00 3.33
673 692 2.971660 TTCTTTCACAGTCGACCACA 57.028 45.000 13.01 0.00 0.00 4.17
674 693 4.609691 TTTTTCTTTCACAGTCGACCAC 57.390 40.909 13.01 0.00 0.00 4.16
692 711 2.323999 TGCATGGGTCAGGGATTTTT 57.676 45.000 0.00 0.00 0.00 1.94
693 712 2.112998 CATGCATGGGTCAGGGATTTT 58.887 47.619 19.40 0.00 0.00 1.82
694 713 1.784358 CATGCATGGGTCAGGGATTT 58.216 50.000 19.40 0.00 0.00 2.17
695 714 0.757935 GCATGCATGGGTCAGGGATT 60.758 55.000 27.34 0.00 0.00 3.01
696 715 1.152610 GCATGCATGGGTCAGGGAT 60.153 57.895 27.34 0.00 0.00 3.85
697 716 0.987613 TAGCATGCATGGGTCAGGGA 60.988 55.000 27.34 0.00 0.00 4.20
698 717 0.111832 ATAGCATGCATGGGTCAGGG 59.888 55.000 27.34 0.11 0.00 4.45
699 718 2.865119 TATAGCATGCATGGGTCAGG 57.135 50.000 27.34 0.91 0.00 3.86
714 733 9.847706 CATTGTCCTAGTACACTGCTAATATAG 57.152 37.037 0.00 0.00 0.00 1.31
715 734 8.304596 GCATTGTCCTAGTACACTGCTAATATA 58.695 37.037 19.36 0.00 46.63 0.86
716 735 7.155328 GCATTGTCCTAGTACACTGCTAATAT 58.845 38.462 19.36 0.00 46.63 1.28
717 736 6.513180 GCATTGTCCTAGTACACTGCTAATA 58.487 40.000 19.36 0.00 46.63 0.98
718 737 5.360591 GCATTGTCCTAGTACACTGCTAAT 58.639 41.667 19.36 0.00 46.63 1.73
719 738 4.755411 GCATTGTCCTAGTACACTGCTAA 58.245 43.478 19.36 0.00 46.63 3.09
720 739 4.386867 GCATTGTCCTAGTACACTGCTA 57.613 45.455 19.36 0.00 46.63 3.49
721 740 3.252974 GCATTGTCCTAGTACACTGCT 57.747 47.619 19.36 0.00 46.63 4.24
723 742 2.420129 GGGGCATTGTCCTAGTACACTG 60.420 54.545 7.34 1.93 34.23 3.66
724 743 1.838077 GGGGCATTGTCCTAGTACACT 59.162 52.381 7.34 0.00 0.00 3.55
725 744 1.838077 AGGGGCATTGTCCTAGTACAC 59.162 52.381 7.34 0.00 0.00 2.90
726 745 1.837439 CAGGGGCATTGTCCTAGTACA 59.163 52.381 7.34 0.00 0.00 2.90
727 746 1.475213 GCAGGGGCATTGTCCTAGTAC 60.475 57.143 7.34 0.00 40.72 2.73
728 747 0.837272 GCAGGGGCATTGTCCTAGTA 59.163 55.000 7.34 0.00 40.72 1.82
729 748 1.609783 GCAGGGGCATTGTCCTAGT 59.390 57.895 7.34 0.00 40.72 2.57
730 749 1.524621 CGCAGGGGCATTGTCCTAG 60.525 63.158 7.34 1.27 41.24 3.02
731 750 1.847798 AACGCAGGGGCATTGTCCTA 61.848 55.000 7.34 0.00 41.24 2.94
732 751 3.210012 AACGCAGGGGCATTGTCCT 62.210 57.895 7.34 1.14 41.24 3.85
733 752 2.676471 AACGCAGGGGCATTGTCC 60.676 61.111 0.00 0.00 41.24 4.02
734 753 2.568090 CAACGCAGGGGCATTGTC 59.432 61.111 0.00 0.00 38.34 3.18
735 754 2.990967 CCAACGCAGGGGCATTGT 60.991 61.111 0.00 0.00 41.39 2.71
736 755 2.216750 CTTCCAACGCAGGGGCATTG 62.217 60.000 0.00 0.00 42.54 2.82
737 756 1.978617 CTTCCAACGCAGGGGCATT 60.979 57.895 0.00 0.00 41.24 3.56
738 757 2.361610 CTTCCAACGCAGGGGCAT 60.362 61.111 0.00 0.00 41.24 4.40
739 758 4.659172 CCTTCCAACGCAGGGGCA 62.659 66.667 0.00 0.00 41.24 5.36
742 761 2.587322 TATCGCCTTCCAACGCAGGG 62.587 60.000 0.00 0.00 0.00 4.45
743 762 0.532862 ATATCGCCTTCCAACGCAGG 60.533 55.000 0.00 0.00 0.00 4.85
744 763 2.148916 TATATCGCCTTCCAACGCAG 57.851 50.000 0.00 0.00 0.00 5.18
745 764 2.605837 TTATATCGCCTTCCAACGCA 57.394 45.000 0.00 0.00 0.00 5.24
746 765 5.796350 ATATTTATATCGCCTTCCAACGC 57.204 39.130 0.00 0.00 0.00 4.84
747 766 7.596749 AGAATATTTATATCGCCTTCCAACG 57.403 36.000 0.00 0.00 0.00 4.10
748 767 9.654663 ACTAGAATATTTATATCGCCTTCCAAC 57.345 33.333 0.00 0.00 0.00 3.77
751 770 9.448294 CGTACTAGAATATTTATATCGCCTTCC 57.552 37.037 0.00 0.00 0.00 3.46
768 787 9.410556 GGTAAATCACAAGTTAACGTACTAGAA 57.589 33.333 0.00 0.00 0.00 2.10
769 788 8.796475 AGGTAAATCACAAGTTAACGTACTAGA 58.204 33.333 0.00 0.00 28.13 2.43
770 789 8.857216 CAGGTAAATCACAAGTTAACGTACTAG 58.143 37.037 0.00 0.00 28.13 2.57
771 790 7.329226 GCAGGTAAATCACAAGTTAACGTACTA 59.671 37.037 0.00 0.00 28.13 1.82
772 791 6.146673 GCAGGTAAATCACAAGTTAACGTACT 59.853 38.462 0.00 0.00 28.13 2.73
773 792 6.301861 GCAGGTAAATCACAAGTTAACGTAC 58.698 40.000 0.00 0.00 28.13 3.67
774 793 5.409214 GGCAGGTAAATCACAAGTTAACGTA 59.591 40.000 0.00 0.00 28.13 3.57
775 794 4.214758 GGCAGGTAAATCACAAGTTAACGT 59.785 41.667 0.00 0.00 28.13 3.99
776 795 4.379082 GGGCAGGTAAATCACAAGTTAACG 60.379 45.833 0.00 0.00 28.13 3.18
777 796 4.521256 TGGGCAGGTAAATCACAAGTTAAC 59.479 41.667 0.00 0.00 0.00 2.01
778 797 4.730966 TGGGCAGGTAAATCACAAGTTAA 58.269 39.130 0.00 0.00 0.00 2.01
779 798 4.374689 TGGGCAGGTAAATCACAAGTTA 57.625 40.909 0.00 0.00 0.00 2.24
780 799 3.237268 TGGGCAGGTAAATCACAAGTT 57.763 42.857 0.00 0.00 0.00 2.66
781 800 2.969821 TGGGCAGGTAAATCACAAGT 57.030 45.000 0.00 0.00 0.00 3.16
782 801 7.581213 TTAATATGGGCAGGTAAATCACAAG 57.419 36.000 0.00 0.00 0.00 3.16
783 802 7.563188 ACATTAATATGGGCAGGTAAATCACAA 59.437 33.333 0.00 0.00 36.01 3.33
784 803 7.014134 CACATTAATATGGGCAGGTAAATCACA 59.986 37.037 0.00 0.00 36.01 3.58
785 804 7.230510 TCACATTAATATGGGCAGGTAAATCAC 59.769 37.037 0.00 0.00 35.03 3.06
786 805 7.293828 TCACATTAATATGGGCAGGTAAATCA 58.706 34.615 0.00 0.00 35.03 2.57
787 806 7.759489 TCACATTAATATGGGCAGGTAAATC 57.241 36.000 0.00 0.00 35.03 2.17
788 807 8.587608 CAATCACATTAATATGGGCAGGTAAAT 58.412 33.333 0.00 0.00 35.03 1.40
789 808 7.563188 ACAATCACATTAATATGGGCAGGTAAA 59.437 33.333 0.00 0.00 35.03 2.01
790 809 7.014134 CACAATCACATTAATATGGGCAGGTAA 59.986 37.037 0.00 0.00 35.03 2.85
791 810 6.489700 CACAATCACATTAATATGGGCAGGTA 59.510 38.462 0.00 0.00 35.03 3.08
792 811 5.302568 CACAATCACATTAATATGGGCAGGT 59.697 40.000 0.00 0.00 35.03 4.00
793 812 5.302568 ACACAATCACATTAATATGGGCAGG 59.697 40.000 0.00 0.00 35.03 4.85
794 813 6.395426 ACACAATCACATTAATATGGGCAG 57.605 37.500 0.00 0.00 35.03 4.85
795 814 7.888250 TTACACAATCACATTAATATGGGCA 57.112 32.000 0.00 0.00 35.03 5.36
828 847 5.476091 AAATTACGGGCAGGATTGAAAAA 57.524 34.783 0.00 0.00 0.00 1.94
829 848 5.393678 GCTAAATTACGGGCAGGATTGAAAA 60.394 40.000 0.00 0.00 0.00 2.29
830 849 4.097286 GCTAAATTACGGGCAGGATTGAAA 59.903 41.667 0.00 0.00 0.00 2.69
831 850 3.630312 GCTAAATTACGGGCAGGATTGAA 59.370 43.478 0.00 0.00 0.00 2.69
832 851 3.118038 AGCTAAATTACGGGCAGGATTGA 60.118 43.478 0.00 0.00 0.00 2.57
833 852 3.214328 AGCTAAATTACGGGCAGGATTG 58.786 45.455 0.00 0.00 0.00 2.67
834 853 3.577805 AGCTAAATTACGGGCAGGATT 57.422 42.857 0.00 0.00 0.00 3.01
835 854 3.577805 AAGCTAAATTACGGGCAGGAT 57.422 42.857 0.00 0.00 0.00 3.24
836 855 4.699925 ATAAGCTAAATTACGGGCAGGA 57.300 40.909 0.00 0.00 0.00 3.86
837 856 7.448748 AAATATAAGCTAAATTACGGGCAGG 57.551 36.000 0.00 0.00 0.00 4.85
838 857 8.564574 TCAAAATATAAGCTAAATTACGGGCAG 58.435 33.333 0.00 0.00 0.00 4.85
839 858 8.453238 TCAAAATATAAGCTAAATTACGGGCA 57.547 30.769 0.00 0.00 0.00 5.36
840 859 8.021396 CCTCAAAATATAAGCTAAATTACGGGC 58.979 37.037 0.00 0.00 0.00 6.13
841 860 9.280174 TCCTCAAAATATAAGCTAAATTACGGG 57.720 33.333 0.00 0.00 0.00 5.28
851 870 9.692325 ATCAAACTTCTCCTCAAAATATAAGCT 57.308 29.630 0.00 0.00 0.00 3.74
860 879 9.847224 AGTTTACTTATCAAACTTCTCCTCAAA 57.153 29.630 0.00 0.00 42.18 2.69
861 880 9.273016 CAGTTTACTTATCAAACTTCTCCTCAA 57.727 33.333 0.00 0.00 42.18 3.02
862 881 8.647796 TCAGTTTACTTATCAAACTTCTCCTCA 58.352 33.333 0.00 0.00 42.18 3.86
863 882 9.490379 TTCAGTTTACTTATCAAACTTCTCCTC 57.510 33.333 0.00 0.00 42.18 3.71
864 883 9.495572 CTTCAGTTTACTTATCAAACTTCTCCT 57.504 33.333 0.00 0.00 42.18 3.69
865 884 9.274206 ACTTCAGTTTACTTATCAAACTTCTCC 57.726 33.333 0.00 0.00 42.18 3.71
867 886 9.832445 TCACTTCAGTTTACTTATCAAACTTCT 57.168 29.630 0.00 0.00 42.18 2.85
870 889 9.614792 ACTTCACTTCAGTTTACTTATCAAACT 57.385 29.630 0.00 0.00 44.91 2.66
873 892 9.607988 TCAACTTCACTTCAGTTTACTTATCAA 57.392 29.630 0.00 0.00 31.83 2.57
874 893 9.042008 GTCAACTTCACTTCAGTTTACTTATCA 57.958 33.333 0.00 0.00 31.83 2.15
875 894 9.262358 AGTCAACTTCACTTCAGTTTACTTATC 57.738 33.333 0.00 0.00 35.93 1.75
876 895 9.262358 GAGTCAACTTCACTTCAGTTTACTTAT 57.738 33.333 2.14 0.00 38.33 1.73
877 896 8.255206 TGAGTCAACTTCACTTCAGTTTACTTA 58.745 33.333 0.00 0.00 38.33 2.24
878 897 7.103641 TGAGTCAACTTCACTTCAGTTTACTT 58.896 34.615 0.00 0.00 38.33 2.24
879 898 6.640518 TGAGTCAACTTCACTTCAGTTTACT 58.359 36.000 0.00 0.38 40.06 2.24
880 899 6.757010 TCTGAGTCAACTTCACTTCAGTTTAC 59.243 38.462 0.00 0.00 31.83 2.01
881 900 6.873997 TCTGAGTCAACTTCACTTCAGTTTA 58.126 36.000 0.00 0.00 31.83 2.01
882 901 5.734720 TCTGAGTCAACTTCACTTCAGTTT 58.265 37.500 0.00 0.00 31.83 2.66
883 902 5.344743 TCTGAGTCAACTTCACTTCAGTT 57.655 39.130 0.00 0.00 34.67 3.16
884 903 5.344743 TTCTGAGTCAACTTCACTTCAGT 57.655 39.130 0.00 0.00 0.00 3.41
885 904 4.749099 CCTTCTGAGTCAACTTCACTTCAG 59.251 45.833 0.00 0.00 0.00 3.02
886 905 4.162320 ACCTTCTGAGTCAACTTCACTTCA 59.838 41.667 0.00 0.00 0.00 3.02
887 906 4.698575 ACCTTCTGAGTCAACTTCACTTC 58.301 43.478 0.00 0.00 0.00 3.01
888 907 4.762289 ACCTTCTGAGTCAACTTCACTT 57.238 40.909 0.00 0.00 0.00 3.16
889 908 5.221541 CCTTACCTTCTGAGTCAACTTCACT 60.222 44.000 0.00 0.00 0.00 3.41
890 909 4.991687 CCTTACCTTCTGAGTCAACTTCAC 59.008 45.833 0.00 0.00 0.00 3.18
891 910 4.899457 TCCTTACCTTCTGAGTCAACTTCA 59.101 41.667 0.00 0.00 0.00 3.02
892 911 5.470047 TCCTTACCTTCTGAGTCAACTTC 57.530 43.478 0.00 0.00 0.00 3.01
893 912 5.888982 TTCCTTACCTTCTGAGTCAACTT 57.111 39.130 0.00 0.00 0.00 2.66
894 913 5.367060 ACTTTCCTTACCTTCTGAGTCAACT 59.633 40.000 0.00 0.00 0.00 3.16
895 914 5.612351 ACTTTCCTTACCTTCTGAGTCAAC 58.388 41.667 0.00 0.00 0.00 3.18
896 915 5.888982 ACTTTCCTTACCTTCTGAGTCAA 57.111 39.130 0.00 0.00 0.00 3.18
897 916 6.553852 ACTTACTTTCCTTACCTTCTGAGTCA 59.446 38.462 0.00 0.00 0.00 3.41
898 917 6.995364 ACTTACTTTCCTTACCTTCTGAGTC 58.005 40.000 0.00 0.00 0.00 3.36
899 918 6.997942 ACTTACTTTCCTTACCTTCTGAGT 57.002 37.500 0.00 0.00 0.00 3.41
900 919 8.124808 ACTACTTACTTTCCTTACCTTCTGAG 57.875 38.462 0.00 0.00 0.00 3.35
901 920 9.765295 ATACTACTTACTTTCCTTACCTTCTGA 57.235 33.333 0.00 0.00 0.00 3.27
920 939 9.228949 CGGACAAACATACCTCTATATACTACT 57.771 37.037 0.00 0.00 0.00 2.57
921 940 9.007901 ACGGACAAACATACCTCTATATACTAC 57.992 37.037 0.00 0.00 0.00 2.73
923 942 9.750783 ATACGGACAAACATACCTCTATATACT 57.249 33.333 0.00 0.00 0.00 2.12
926 945 7.817962 GCAATACGGACAAACATACCTCTATAT 59.182 37.037 0.00 0.00 0.00 0.86
927 946 7.014905 AGCAATACGGACAAACATACCTCTATA 59.985 37.037 0.00 0.00 0.00 1.31
928 947 5.989777 GCAATACGGACAAACATACCTCTAT 59.010 40.000 0.00 0.00 0.00 1.98
929 948 5.128171 AGCAATACGGACAAACATACCTCTA 59.872 40.000 0.00 0.00 0.00 2.43
930 949 4.081087 AGCAATACGGACAAACATACCTCT 60.081 41.667 0.00 0.00 0.00 3.69
931 950 4.189231 AGCAATACGGACAAACATACCTC 58.811 43.478 0.00 0.00 0.00 3.85
932 951 4.216411 AGCAATACGGACAAACATACCT 57.784 40.909 0.00 0.00 0.00 3.08
933 952 7.900782 ATATAGCAATACGGACAAACATACC 57.099 36.000 0.00 0.00 0.00 2.73
949 968 9.998106 GTAGAGAGGGTCAAATTAATATAGCAA 57.002 33.333 0.00 0.00 0.00 3.91
954 973 8.798975 TCAGGTAGAGAGGGTCAAATTAATAT 57.201 34.615 0.00 0.00 0.00 1.28
955 974 8.618240 TTCAGGTAGAGAGGGTCAAATTAATA 57.382 34.615 0.00 0.00 0.00 0.98
964 983 4.828387 ACGATTATTCAGGTAGAGAGGGTC 59.172 45.833 0.00 0.00 0.00 4.46
967 986 6.071896 TGCATACGATTATTCAGGTAGAGAGG 60.072 42.308 0.00 0.00 0.00 3.69
983 1002 4.422073 TTCATTTCCCTCTGCATACGAT 57.578 40.909 0.00 0.00 0.00 3.73
984 1003 3.904800 TTCATTTCCCTCTGCATACGA 57.095 42.857 0.00 0.00 0.00 3.43
985 1004 5.541845 TCTATTCATTTCCCTCTGCATACG 58.458 41.667 0.00 0.00 0.00 3.06
986 1005 5.411053 GCTCTATTCATTTCCCTCTGCATAC 59.589 44.000 0.00 0.00 0.00 2.39
1007 1026 1.538047 TGCTTGTTCTTCCATGGCTC 58.462 50.000 6.96 0.00 0.00 4.70
1009 1028 1.738030 GCATGCTTGTTCTTCCATGGC 60.738 52.381 11.37 0.00 36.47 4.40
1025 1044 4.564041 ACTCTCTGTGTAGTTTCTGCATG 58.436 43.478 0.00 0.00 0.00 4.06
1040 1059 6.638610 AGATTACTGTTGATCCAACTCTCTG 58.361 40.000 10.63 0.72 43.85 3.35
1046 1065 6.539103 GGGTTCTAGATTACTGTTGATCCAAC 59.461 42.308 0.00 3.10 43.78 3.77
1058 1077 5.429130 CCTTGTTCCTGGGTTCTAGATTAC 58.571 45.833 0.00 0.00 0.00 1.89
1059 1078 4.080526 GCCTTGTTCCTGGGTTCTAGATTA 60.081 45.833 0.00 0.00 0.00 1.75
1060 1079 3.308473 GCCTTGTTCCTGGGTTCTAGATT 60.308 47.826 0.00 0.00 0.00 2.40
1065 1084 0.111253 CTGCCTTGTTCCTGGGTTCT 59.889 55.000 0.00 0.00 0.00 3.01
1066 1085 0.110486 TCTGCCTTGTTCCTGGGTTC 59.890 55.000 0.00 0.00 0.00 3.62
1071 1090 1.672356 CCGGTCTGCCTTGTTCCTG 60.672 63.158 0.00 0.00 0.00 3.86
1080 1099 4.410400 CCTTCCACCCGGTCTGCC 62.410 72.222 0.00 0.00 0.00 4.85
1081 1100 2.692273 AAACCTTCCACCCGGTCTGC 62.692 60.000 0.00 0.00 31.87 4.26
1082 1101 0.605589 GAAACCTTCCACCCGGTCTG 60.606 60.000 0.00 0.00 31.87 3.51
1084 1103 1.670083 CGAAACCTTCCACCCGGTC 60.670 63.158 0.00 0.00 31.87 4.79
1089 1108 1.165270 CCATCACGAAACCTTCCACC 58.835 55.000 0.00 0.00 0.00 4.61
1128 1147 1.675310 CGCTCCAATGGCAAGGACA 60.675 57.895 7.85 0.00 0.00 4.02
1207 1226 2.635427 AGGAGAGAAGTGGAAAGGACAC 59.365 50.000 0.00 0.00 39.10 3.67
1236 1255 4.747218 TGCTGCTGCATCAATCCA 57.253 50.000 14.93 0.00 45.31 3.41
1268 1347 5.365619 ACATCGTCCACACTAGAAAAAGTT 58.634 37.500 0.00 0.00 0.00 2.66
1275 1354 3.056821 CCAGAAACATCGTCCACACTAGA 60.057 47.826 0.00 0.00 0.00 2.43
1285 1364 0.322816 AGCATGGCCAGAAACATCGT 60.323 50.000 13.05 0.00 0.00 3.73
1342 1421 1.001487 CATTGTGCTGTTCTCGCCAAA 60.001 47.619 0.00 0.00 0.00 3.28
1366 1448 7.572523 TGAACAAGAGAATGTCACAAAAGAT 57.427 32.000 0.00 0.00 31.81 2.40
1370 1452 6.698008 ACATGAACAAGAGAATGTCACAAA 57.302 33.333 0.00 0.00 31.81 2.83
1374 1456 7.216494 TGTAGAACATGAACAAGAGAATGTCA 58.784 34.615 0.00 0.00 32.20 3.58
1409 1491 1.061131 CATCGTCAACGCTGGCTAAAG 59.939 52.381 0.00 0.00 39.60 1.85
1415 1497 3.853330 CGGCATCGTCAACGCTGG 61.853 66.667 8.28 0.00 36.17 4.85
1420 1502 0.529773 TCCATAGCGGCATCGTCAAC 60.530 55.000 1.45 0.00 38.89 3.18
1424 1506 2.027605 CGTCCATAGCGGCATCGT 59.972 61.111 1.45 0.00 38.89 3.73
1426 1508 0.249489 AGAACGTCCATAGCGGCATC 60.249 55.000 1.45 0.00 33.14 3.91
1427 1509 0.178068 AAGAACGTCCATAGCGGCAT 59.822 50.000 1.45 0.00 33.14 4.40
1436 1518 3.583276 ATGCGCGGAAGAACGTCCA 62.583 57.895 3.18 0.00 37.56 4.02
1441 1523 0.096454 GTACCAATGCGCGGAAGAAC 59.904 55.000 3.18 0.00 0.00 3.01
1448 1530 0.586256 CGTGATTGTACCAATGCGCG 60.586 55.000 0.00 0.00 0.00 6.86
1459 1541 7.513371 TTGTAAAAATAAGGGTCGTGATTGT 57.487 32.000 0.00 0.00 0.00 2.71
1460 1542 7.487829 CCATTGTAAAAATAAGGGTCGTGATTG 59.512 37.037 0.00 0.00 0.00 2.67
1462 1544 6.405397 GCCATTGTAAAAATAAGGGTCGTGAT 60.405 38.462 0.00 0.00 30.81 3.06
1466 1548 5.317733 TGCCATTGTAAAAATAAGGGTCG 57.682 39.130 0.00 0.00 30.81 4.79
1471 1553 6.037391 CCTGCCAATGCCATTGTAAAAATAAG 59.963 38.462 15.83 0.00 38.59 1.73
1480 1562 0.974010 CTCCCTGCCAATGCCATTGT 60.974 55.000 15.83 0.00 38.59 2.71
1481 1563 0.685131 TCTCCCTGCCAATGCCATTG 60.685 55.000 10.52 10.52 39.94 2.82
1482 1564 0.396695 CTCTCCCTGCCAATGCCATT 60.397 55.000 0.00 0.00 36.33 3.16
1483 1565 1.229359 CTCTCCCTGCCAATGCCAT 59.771 57.895 0.00 0.00 36.33 4.40
1490 1572 0.547471 TCCATTGACTCTCCCTGCCA 60.547 55.000 0.00 0.00 0.00 4.92
1495 1577 1.065854 CCACTGTCCATTGACTCTCCC 60.066 57.143 0.00 0.00 42.28 4.30
1504 1586 2.671070 CGCCTCCCACTGTCCATT 59.329 61.111 0.00 0.00 0.00 3.16
1512 1594 3.622060 TAAGCTTGCCGCCTCCCAC 62.622 63.158 9.86 0.00 40.39 4.61
1518 1600 2.486966 CTTGCTAAGCTTGCCGCC 59.513 61.111 9.86 0.00 40.39 6.13
1603 1685 1.226746 GTACGGGGATTGTAGCATGC 58.773 55.000 10.51 10.51 0.00 4.06
1607 1689 1.878953 CATGGTACGGGGATTGTAGC 58.121 55.000 0.00 0.00 39.96 3.58
1637 1719 4.876107 CATTGTGTATGAGAACAGGGTACC 59.124 45.833 2.17 2.17 43.12 3.34
1665 1756 4.341235 TCCAGTGTTATTGGACTATCTCCG 59.659 45.833 0.00 0.00 43.03 4.63
1690 1787 3.192001 CCAATGTTGTTGGACCAGATCTG 59.808 47.826 16.24 16.24 42.06 2.90
1702 1799 2.106566 TGACAAGGCACCAATGTTGTT 58.893 42.857 0.45 0.00 33.30 2.83
1739 1839 6.130723 CAGAGATCTTTGAGACGACGTATAC 58.869 44.000 7.48 0.00 0.00 1.47
1743 1843 2.814919 ACAGAGATCTTTGAGACGACGT 59.185 45.455 19.45 0.00 0.00 4.34
1761 1861 3.683822 GGAACAGAGCAAATGAGAGACAG 59.316 47.826 0.00 0.00 0.00 3.51
1821 1921 4.162812 GAGACTTGTCAAGCTTAGACTCG 58.837 47.826 21.59 16.48 36.94 4.18
1824 1924 3.670991 CACGAGACTTGTCAAGCTTAGAC 59.329 47.826 12.66 17.11 36.55 2.59
1884 1984 7.558807 TCAATCACTTGGAATGCTCTTTCATAT 59.441 33.333 0.00 0.00 32.95 1.78
1982 2082 4.199310 GGCAAATGAGGTAGCACAATAGA 58.801 43.478 0.00 0.00 0.00 1.98
2099 2199 0.854705 GGTTACCACAACGTCACGTC 59.145 55.000 1.67 0.00 39.99 4.34
2199 2306 5.440234 TTGTTGCATACGTACAAACCAAT 57.560 34.783 0.00 0.00 0.00 3.16
2286 2393 0.607762 TGCGCCAATAGTGAAGCCAA 60.608 50.000 4.18 0.00 0.00 4.52
2391 2498 2.637382 TGTCAACTCTACAGGATTGCCA 59.363 45.455 0.00 0.00 36.29 4.92
2447 2554 3.294214 AGATGCCCATTGATTGAGTTCC 58.706 45.455 0.00 0.00 0.00 3.62
2486 2593 3.337358 TGCATGTCGTGTCTCATCAATT 58.663 40.909 0.00 0.00 0.00 2.32
2499 2606 2.067013 CAGAGCCTATCATGCATGTCG 58.933 52.381 25.43 14.47 0.00 4.35
2506 2616 0.605860 GCCCAGCAGAGCCTATCATG 60.606 60.000 0.00 0.00 0.00 3.07
2507 2617 1.058428 TGCCCAGCAGAGCCTATCAT 61.058 55.000 0.00 0.00 33.32 2.45
2512 2622 3.336568 ACATGCCCAGCAGAGCCT 61.337 61.111 0.00 0.00 43.65 4.58
2513 2623 2.827642 GACATGCCCAGCAGAGCC 60.828 66.667 0.00 0.00 43.65 4.70
2517 2627 1.025113 CAGTCTGACATGCCCAGCAG 61.025 60.000 10.88 3.15 43.65 4.24
2543 2653 9.517609 CTAGTATACTGTTGGTGAGTGTAAATC 57.482 37.037 15.90 0.00 0.00 2.17
2556 2666 6.582672 CGACATGCCATACTAGTATACTGTTG 59.417 42.308 15.03 14.09 0.00 3.33
2557 2667 6.678878 CGACATGCCATACTAGTATACTGTT 58.321 40.000 15.03 4.60 0.00 3.16
2562 2672 4.004982 TCGCGACATGCCATACTAGTATA 58.995 43.478 15.03 0.68 42.08 1.47
2604 2714 1.678970 GGGGCCTGCGATTGTTTCT 60.679 57.895 0.84 0.00 0.00 2.52
3556 3694 2.125673 CGAACTGGCACCGGTAGG 60.126 66.667 6.87 0.00 45.13 3.18
3590 3728 1.808945 ACTCCAGCTGCTTCATTTTCG 59.191 47.619 8.66 0.00 0.00 3.46
3819 3957 2.587522 GCTTTCTTCCTTGTGACCCTT 58.412 47.619 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.