Multiple sequence alignment - TraesCS3B01G490700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G490700 chr3B 100.000 3944 0 0 1 3944 736714401 736710458 0.000000e+00 7284.0
1 TraesCS3B01G490700 chr3B 76.198 1189 222 42 1053 2221 736742179 736741032 4.420000e-159 571.0
2 TraesCS3B01G490700 chr3B 79.502 683 125 7 1541 2220 736915155 736914485 4.610000e-129 472.0
3 TraesCS3B01G490700 chr3B 90.657 289 23 3 3660 3944 416812509 416812221 8.000000e-102 381.0
4 TraesCS3B01G490700 chr3B 80.814 344 60 1 2224 2561 736740870 736740527 8.400000e-67 265.0
5 TraesCS3B01G490700 chr3B 81.379 145 26 1 678 821 586737780 586737924 2.490000e-22 117.0
6 TraesCS3B01G490700 chr3D 95.310 1450 35 14 2224 3660 554767428 554765999 0.000000e+00 2270.0
7 TraesCS3B01G490700 chr3D 95.842 1395 52 2 827 2221 554768978 554767590 0.000000e+00 2250.0
8 TraesCS3B01G490700 chr3D 95.879 1359 36 6 2222 3573 554777020 554775675 0.000000e+00 2182.0
9 TraesCS3B01G490700 chr3D 95.849 1349 54 2 874 2221 554778527 554777180 0.000000e+00 2180.0
10 TraesCS3B01G490700 chr3D 92.912 522 30 2 132 653 554779340 554778826 0.000000e+00 752.0
11 TraesCS3B01G490700 chr3D 80.028 726 139 4 1499 2221 554688467 554687745 2.090000e-147 532.0
12 TraesCS3B01G490700 chr3D 92.793 222 16 0 653 874 554778788 554778567 4.920000e-84 322.0
13 TraesCS3B01G490700 chr3D 94.245 139 8 0 3 141 554779564 554779426 3.090000e-51 213.0
14 TraesCS3B01G490700 chr3D 78.846 104 22 0 2111 2214 554731576 554731473 1.970000e-08 71.3
15 TraesCS3B01G490700 chrUn 94.624 1395 51 3 827 2221 45262234 45263604 0.000000e+00 2139.0
16 TraesCS3B01G490700 chrUn 94.271 803 21 9 2871 3660 406194386 406195176 0.000000e+00 1205.0
17 TraesCS3B01G490700 chrUn 97.934 242 5 0 2224 2465 45263766 45264007 1.690000e-113 420.0
18 TraesCS3B01G490700 chr3A 95.107 1349 64 2 874 2221 691043163 691041816 0.000000e+00 2124.0
19 TraesCS3B01G490700 chr3A 92.350 1438 67 17 2222 3651 691041656 691040254 0.000000e+00 2006.0
20 TraesCS3B01G490700 chr3A 93.881 523 23 4 133 653 691043978 691043463 0.000000e+00 780.0
21 TraesCS3B01G490700 chr3A 80.301 731 129 8 1495 2221 690999092 690998373 4.480000e-149 538.0
22 TraesCS3B01G490700 chr3A 79.741 696 128 10 1531 2221 691092780 691092093 3.540000e-135 492.0
23 TraesCS3B01G490700 chr3A 90.845 284 21 1 3661 3944 717888482 717888204 3.720000e-100 375.0
24 TraesCS3B01G490700 chr3A 91.892 222 17 1 653 874 691043425 691043205 3.830000e-80 309.0
25 TraesCS3B01G490700 chr3A 78.867 459 89 4 2222 2674 691058968 691058512 1.780000e-78 303.0
26 TraesCS3B01G490700 chr3A 81.159 345 64 1 1027 1371 690999536 690999193 3.880000e-70 276.0
27 TraesCS3B01G490700 chr3A 85.366 123 16 2 670 791 83981171 83981292 4.140000e-25 126.0
28 TraesCS3B01G490700 chr7D 92.254 284 22 0 3661 3944 136305368 136305085 1.710000e-108 403.0
29 TraesCS3B01G490700 chr7D 84.375 128 19 1 675 801 140920136 140920263 1.490000e-24 124.0
30 TraesCS3B01G490700 chr2A 91.349 289 19 5 3661 3944 11264187 11264474 1.330000e-104 390.0
31 TraesCS3B01G490700 chr2A 91.259 286 21 3 3661 3944 740013656 740013939 1.720000e-103 387.0
32 TraesCS3B01G490700 chr5A 91.197 284 21 1 3661 3944 573059938 573059659 2.220000e-102 383.0
33 TraesCS3B01G490700 chr7B 90.411 292 20 8 3661 3944 49432601 49432892 1.030000e-100 377.0
34 TraesCS3B01G490700 chr7A 90.559 286 25 2 3661 3944 48643021 48642736 1.030000e-100 377.0
35 TraesCS3B01G490700 chr7A 90.068 292 22 6 3660 3944 712428624 712428915 4.810000e-99 372.0
36 TraesCS3B01G490700 chr6A 88.889 117 10 3 678 791 99403163 99403047 1.480000e-29 141.0
37 TraesCS3B01G490700 chr6A 84.286 140 22 0 678 817 184388309 184388170 1.910000e-28 137.0
38 TraesCS3B01G490700 chr4A 84.800 125 16 2 678 801 136431392 136431514 5.350000e-24 122.0
39 TraesCS3B01G490700 chr5D 81.169 154 23 3 670 817 565698173 565698020 6.920000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G490700 chr3B 736710458 736714401 3943 True 7284.00 7284 100.0000 1 3944 1 chr3B.!!$R2 3943
1 TraesCS3B01G490700 chr3B 736914485 736915155 670 True 472.00 472 79.5020 1541 2220 1 chr3B.!!$R3 679
2 TraesCS3B01G490700 chr3B 736740527 736742179 1652 True 418.00 571 78.5060 1053 2561 2 chr3B.!!$R4 1508
3 TraesCS3B01G490700 chr3D 554765999 554768978 2979 True 2260.00 2270 95.5760 827 3660 2 chr3D.!!$R3 2833
4 TraesCS3B01G490700 chr3D 554775675 554779564 3889 True 1129.80 2182 94.3356 3 3573 5 chr3D.!!$R4 3570
5 TraesCS3B01G490700 chr3D 554687745 554688467 722 True 532.00 532 80.0280 1499 2221 1 chr3D.!!$R1 722
6 TraesCS3B01G490700 chrUn 45262234 45264007 1773 False 1279.50 2139 96.2790 827 2465 2 chrUn.!!$F2 1638
7 TraesCS3B01G490700 chrUn 406194386 406195176 790 False 1205.00 1205 94.2710 2871 3660 1 chrUn.!!$F1 789
8 TraesCS3B01G490700 chr3A 691040254 691043978 3724 True 1304.75 2124 93.3075 133 3651 4 chr3A.!!$R5 3518
9 TraesCS3B01G490700 chr3A 691092093 691092780 687 True 492.00 492 79.7410 1531 2221 1 chr3A.!!$R2 690
10 TraesCS3B01G490700 chr3A 690998373 690999536 1163 True 407.00 538 80.7300 1027 2221 2 chr3A.!!$R4 1194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.179018 AGAATCTATGCGGTTGGCCC 60.179 55.0 0.00 0.00 42.61 5.80 F
938 1117 0.813184 CCAGTGCTCGGATGCATTTT 59.187 50.0 0.00 0.00 45.23 1.82 F
1097 1276 0.892358 AGTGTAGACCGCGTGGAAGA 60.892 55.0 24.59 2.35 39.21 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1097 1276 1.064505 CAGCCGCGATGATGACAAAAT 59.935 47.619 8.23 0.0 0.00 1.82 R
2916 3297 1.180029 TTGTAGTACTGGGACGCTCC 58.820 55.000 5.39 0.0 35.23 4.70 R
2954 3338 3.130160 CCTTGCAGCCTCGCCTTC 61.130 66.667 0.00 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.004348 AGAGTGGAGATCGTGCGT 57.996 55.556 0.00 0.00 0.00 5.24
18 19 3.170360 AGAGTGGAGATCGTGCGTA 57.830 52.632 0.00 0.00 0.00 4.42
35 36 2.798847 GCGTAAGTTTGAGTTCGAGGTT 59.201 45.455 0.00 0.00 41.68 3.50
64 65 6.374565 AATTCAGAGCACAAGAATCTATGC 57.625 37.500 10.45 10.45 38.39 3.14
73 74 0.179018 AGAATCTATGCGGTTGGCCC 60.179 55.000 0.00 0.00 42.61 5.80
148 244 3.807538 GGCTGCGACGACGTCCTA 61.808 66.667 21.63 10.13 41.98 2.94
252 350 1.550524 AGGAAGCTAATGTGCGAGTCA 59.449 47.619 0.00 0.00 38.13 3.41
281 379 9.125026 CATCCATTTTAAGCCTAGTCATAGTTT 57.875 33.333 0.00 0.00 0.00 2.66
360 458 8.828644 TCATTGTGAATTCATTTTCTTTTGGTG 58.171 29.630 12.12 0.00 0.00 4.17
361 459 8.614346 CATTGTGAATTCATTTTCTTTTGGTGT 58.386 29.630 12.12 0.00 0.00 4.16
367 465 7.718272 ATTCATTTTCTTTTGGTGTGTCATG 57.282 32.000 0.00 0.00 0.00 3.07
542 640 6.702282 CCTAGATTTTCCATCGTCCTAGTTTC 59.298 42.308 0.00 0.00 0.00 2.78
543 641 6.301169 AGATTTTCCATCGTCCTAGTTTCT 57.699 37.500 0.00 0.00 0.00 2.52
544 642 6.712276 AGATTTTCCATCGTCCTAGTTTCTT 58.288 36.000 0.00 0.00 0.00 2.52
545 643 7.168905 AGATTTTCCATCGTCCTAGTTTCTTT 58.831 34.615 0.00 0.00 0.00 2.52
578 676 3.446516 GGGTCGTCCTAGTTCATTGTACT 59.553 47.826 0.00 1.43 0.00 2.73
579 677 4.641989 GGGTCGTCCTAGTTCATTGTACTA 59.358 45.833 0.00 3.52 0.00 1.82
580 678 5.449725 GGGTCGTCCTAGTTCATTGTACTAC 60.450 48.000 0.00 0.00 0.00 2.73
593 691 5.188751 TCATTGTACTACCATGGATCACACA 59.811 40.000 21.47 12.29 0.00 3.72
605 703 1.137872 GATCACACAATCTCCTCGCCT 59.862 52.381 0.00 0.00 0.00 5.52
734 870 4.668576 ACAAACTGATATGCGTGAACAG 57.331 40.909 0.00 0.00 35.14 3.16
866 1002 1.000233 TTGTGCATGCCCCCTAAGG 60.000 57.895 16.68 0.00 0.00 2.69
938 1117 0.813184 CCAGTGCTCGGATGCATTTT 59.187 50.000 0.00 0.00 45.23 1.82
948 1127 2.731968 CGGATGCATTTTCCTTTGTCCG 60.732 50.000 0.00 1.60 40.93 4.79
1097 1276 0.892358 AGTGTAGACCGCGTGGAAGA 60.892 55.000 24.59 2.35 39.21 2.87
1353 1532 4.024048 GTCCAGAAGCTCGATCAAAACAAA 60.024 41.667 0.00 0.00 0.00 2.83
1381 1560 5.173664 TCATGAAGCTCTACTGTGATTGTG 58.826 41.667 0.00 0.00 0.00 3.33
1382 1561 3.329386 TGAAGCTCTACTGTGATTGTGC 58.671 45.455 0.00 0.00 0.00 4.57
1394 1573 2.096218 GTGATTGTGCCTTGTTCTCGAC 60.096 50.000 0.00 0.00 0.00 4.20
1414 1593 3.485764 TGCGCTGGCATGGTATTAA 57.514 47.368 9.73 0.00 46.21 1.40
2143 2352 3.056322 ACAAGATGTCCTGGTTACCGTAC 60.056 47.826 0.00 0.00 0.00 3.67
2632 3013 6.478512 TGGTAAAAGAAGCCAAAGAAATGT 57.521 33.333 0.00 0.00 0.00 2.71
2698 3079 6.882656 AGTGAACTAGAGTATGTCGTAGGTA 58.117 40.000 0.00 0.00 0.00 3.08
2782 3163 2.728435 GCGAACCGGTGGGACCTAT 61.728 63.158 8.52 0.00 35.66 2.57
2817 3198 3.430929 GGGCCGAGATGATGGTGTATATC 60.431 52.174 0.00 0.00 0.00 1.63
2916 3297 2.031069 GCTCATGCATGCTGGTATTCTG 60.031 50.000 22.25 0.00 39.41 3.02
3004 3388 6.573434 TCAGTCTATGTGTATCCATCACAAC 58.427 40.000 2.99 0.00 46.47 3.32
3050 3460 1.946081 TGATGACTTTGCGCTTGTTGA 59.054 42.857 9.73 0.00 0.00 3.18
3129 3539 4.501921 GGTGTACGCTTGTACTACTAATGC 59.498 45.833 6.35 0.00 46.96 3.56
3136 3546 6.263842 ACGCTTGTACTACTAATGCTACCATA 59.736 38.462 0.00 0.00 0.00 2.74
3137 3547 6.581542 CGCTTGTACTACTAATGCTACCATAC 59.418 42.308 0.00 0.00 0.00 2.39
3138 3548 7.521748 CGCTTGTACTACTAATGCTACCATACT 60.522 40.741 0.00 0.00 0.00 2.12
3139 3549 8.790718 GCTTGTACTACTAATGCTACCATACTA 58.209 37.037 0.00 0.00 0.00 1.82
3141 3551 8.627208 TGTACTACTAATGCTACCATACTACC 57.373 38.462 0.00 0.00 0.00 3.18
3142 3552 8.219868 TGTACTACTAATGCTACCATACTACCA 58.780 37.037 0.00 0.00 0.00 3.25
3143 3553 9.240734 GTACTACTAATGCTACCATACTACCAT 57.759 37.037 0.00 0.00 0.00 3.55
3272 3686 2.507471 TGTTGGGGGCTTGATTGTTTTT 59.493 40.909 0.00 0.00 0.00 1.94
3483 3897 5.484998 AGTTAACTTAGGGATGTAAACCGGA 59.515 40.000 9.46 0.00 0.00 5.14
3518 3932 5.105716 GCCCACTTATGATCTATCGAGCTAA 60.106 44.000 0.00 0.00 0.00 3.09
3573 3987 5.115472 GCGTTTATTGCATCATTTACATCCG 59.885 40.000 0.00 0.00 0.00 4.18
3604 4022 4.464597 ACTCCTCTTCTTAGCAGTACCAAG 59.535 45.833 0.00 0.00 0.00 3.61
3637 4055 0.111061 TTGGAAGCTCAGGCACACAT 59.889 50.000 0.00 0.00 41.70 3.21
3638 4056 0.607217 TGGAAGCTCAGGCACACATG 60.607 55.000 0.00 0.00 41.70 3.21
3641 4061 0.607489 AAGCTCAGGCACACATGGAC 60.607 55.000 0.00 0.00 41.70 4.02
3655 4075 4.041567 ACACATGGACTGTCTTCATGGTTA 59.958 41.667 22.45 0.00 41.64 2.85
3660 4080 3.262420 GACTGTCTTCATGGTTATGCGT 58.738 45.455 0.00 0.00 34.21 5.24
3661 4081 3.002791 ACTGTCTTCATGGTTATGCGTG 58.997 45.455 0.00 0.00 34.21 5.34
3662 4082 3.002791 CTGTCTTCATGGTTATGCGTGT 58.997 45.455 0.00 0.00 34.21 4.49
3663 4083 3.407698 TGTCTTCATGGTTATGCGTGTT 58.592 40.909 0.00 0.00 34.21 3.32
3664 4084 3.188254 TGTCTTCATGGTTATGCGTGTTG 59.812 43.478 0.00 0.00 34.21 3.33
3665 4085 2.746904 TCTTCATGGTTATGCGTGTTGG 59.253 45.455 0.00 0.00 34.21 3.77
3666 4086 2.481289 TCATGGTTATGCGTGTTGGA 57.519 45.000 0.00 0.00 34.21 3.53
3667 4087 2.784347 TCATGGTTATGCGTGTTGGAA 58.216 42.857 0.00 0.00 34.21 3.53
3668 4088 3.351740 TCATGGTTATGCGTGTTGGAAT 58.648 40.909 0.00 0.00 34.21 3.01
3669 4089 3.761218 TCATGGTTATGCGTGTTGGAATT 59.239 39.130 0.00 0.00 34.21 2.17
3670 4090 4.219507 TCATGGTTATGCGTGTTGGAATTT 59.780 37.500 0.00 0.00 34.21 1.82
3671 4091 4.592485 TGGTTATGCGTGTTGGAATTTT 57.408 36.364 0.00 0.00 0.00 1.82
3672 4092 4.302455 TGGTTATGCGTGTTGGAATTTTG 58.698 39.130 0.00 0.00 0.00 2.44
3673 4093 3.122780 GGTTATGCGTGTTGGAATTTTGC 59.877 43.478 0.00 0.00 0.00 3.68
3674 4094 2.818130 ATGCGTGTTGGAATTTTGCT 57.182 40.000 0.00 0.00 0.00 3.91
3675 4095 3.932545 ATGCGTGTTGGAATTTTGCTA 57.067 38.095 0.00 0.00 0.00 3.49
3676 4096 3.281341 TGCGTGTTGGAATTTTGCTAG 57.719 42.857 0.00 0.00 0.00 3.42
3677 4097 2.621055 TGCGTGTTGGAATTTTGCTAGT 59.379 40.909 0.00 0.00 0.00 2.57
3678 4098 3.815962 TGCGTGTTGGAATTTTGCTAGTA 59.184 39.130 0.00 0.00 0.00 1.82
3679 4099 4.457603 TGCGTGTTGGAATTTTGCTAGTAT 59.542 37.500 0.00 0.00 0.00 2.12
3680 4100 4.793216 GCGTGTTGGAATTTTGCTAGTATG 59.207 41.667 0.00 0.00 0.00 2.39
3681 4101 4.793216 CGTGTTGGAATTTTGCTAGTATGC 59.207 41.667 0.00 0.00 0.00 3.14
3682 4102 5.391950 CGTGTTGGAATTTTGCTAGTATGCT 60.392 40.000 0.00 0.00 0.00 3.79
3683 4103 6.389906 GTGTTGGAATTTTGCTAGTATGCTT 58.610 36.000 0.00 0.00 0.00 3.91
3684 4104 6.868339 GTGTTGGAATTTTGCTAGTATGCTTT 59.132 34.615 0.00 0.00 0.00 3.51
3685 4105 7.384932 GTGTTGGAATTTTGCTAGTATGCTTTT 59.615 33.333 0.00 0.00 0.00 2.27
3686 4106 7.384660 TGTTGGAATTTTGCTAGTATGCTTTTG 59.615 33.333 0.00 0.00 0.00 2.44
3687 4107 6.397272 TGGAATTTTGCTAGTATGCTTTTGG 58.603 36.000 0.00 0.00 0.00 3.28
3688 4108 5.291858 GGAATTTTGCTAGTATGCTTTTGGC 59.708 40.000 0.00 0.00 42.22 4.52
3689 4109 3.866883 TTTGCTAGTATGCTTTTGGCC 57.133 42.857 0.00 0.00 40.92 5.36
3690 4110 1.762708 TGCTAGTATGCTTTTGGCCC 58.237 50.000 0.00 0.00 40.92 5.80
3691 4111 1.005332 TGCTAGTATGCTTTTGGCCCA 59.995 47.619 0.00 0.00 40.92 5.36
3692 4112 2.099405 GCTAGTATGCTTTTGGCCCAA 58.901 47.619 0.00 0.00 40.92 4.12
3693 4113 2.495669 GCTAGTATGCTTTTGGCCCAAA 59.504 45.455 4.38 4.38 40.92 3.28
3694 4114 3.429410 GCTAGTATGCTTTTGGCCCAAAG 60.429 47.826 22.08 22.08 40.92 2.77
3695 4115 2.888212 AGTATGCTTTTGGCCCAAAGA 58.112 42.857 28.67 15.93 40.92 2.52
3696 4116 2.562738 AGTATGCTTTTGGCCCAAAGAC 59.437 45.455 28.67 18.85 40.92 3.01
3697 4117 0.686789 ATGCTTTTGGCCCAAAGACC 59.313 50.000 28.67 14.75 40.92 3.85
3698 4118 0.689080 TGCTTTTGGCCCAAAGACCA 60.689 50.000 28.67 16.89 40.92 4.02
3699 4119 0.467804 GCTTTTGGCCCAAAGACCAA 59.532 50.000 28.67 0.00 44.11 3.67
3700 4120 1.810031 GCTTTTGGCCCAAAGACCAAC 60.810 52.381 28.67 10.13 45.42 3.77
3701 4121 1.762370 CTTTTGGCCCAAAGACCAACT 59.238 47.619 21.94 0.00 45.42 3.16
3702 4122 2.757894 TTTGGCCCAAAGACCAACTA 57.242 45.000 4.38 0.00 45.42 2.24
3703 4123 2.757894 TTGGCCCAAAGACCAACTAA 57.242 45.000 0.00 0.00 40.98 2.24
3704 4124 2.757894 TGGCCCAAAGACCAACTAAA 57.242 45.000 0.00 0.00 31.46 1.85
3705 4125 3.033659 TGGCCCAAAGACCAACTAAAA 57.966 42.857 0.00 0.00 31.46 1.52
3706 4126 3.582164 TGGCCCAAAGACCAACTAAAAT 58.418 40.909 0.00 0.00 31.46 1.82
3707 4127 3.970640 TGGCCCAAAGACCAACTAAAATT 59.029 39.130 0.00 0.00 31.46 1.82
3708 4128 4.039852 TGGCCCAAAGACCAACTAAAATTC 59.960 41.667 0.00 0.00 31.46 2.17
3709 4129 4.283467 GGCCCAAAGACCAACTAAAATTCT 59.717 41.667 0.00 0.00 0.00 2.40
3710 4130 5.230182 GCCCAAAGACCAACTAAAATTCTG 58.770 41.667 0.00 0.00 0.00 3.02
3711 4131 5.010617 GCCCAAAGACCAACTAAAATTCTGA 59.989 40.000 0.00 0.00 0.00 3.27
3712 4132 6.462347 GCCCAAAGACCAACTAAAATTCTGAA 60.462 38.462 0.00 0.00 0.00 3.02
3713 4133 7.496747 CCCAAAGACCAACTAAAATTCTGAAA 58.503 34.615 0.00 0.00 0.00 2.69
3714 4134 8.150296 CCCAAAGACCAACTAAAATTCTGAAAT 58.850 33.333 0.00 0.00 0.00 2.17
3715 4135 9.546428 CCAAAGACCAACTAAAATTCTGAAATT 57.454 29.630 0.00 0.00 36.64 1.82
3719 4139 8.797438 AGACCAACTAAAATTCTGAAATTCTCC 58.203 33.333 0.00 0.00 33.93 3.71
3720 4140 8.712228 ACCAACTAAAATTCTGAAATTCTCCT 57.288 30.769 0.00 0.00 33.93 3.69
3721 4141 8.579863 ACCAACTAAAATTCTGAAATTCTCCTG 58.420 33.333 0.00 0.00 33.93 3.86
3722 4142 8.031277 CCAACTAAAATTCTGAAATTCTCCTGG 58.969 37.037 0.00 0.00 33.93 4.45
3723 4143 8.796475 CAACTAAAATTCTGAAATTCTCCTGGA 58.204 33.333 0.00 0.00 33.93 3.86
3724 4144 8.341892 ACTAAAATTCTGAAATTCTCCTGGAC 57.658 34.615 0.00 0.00 33.93 4.02
3725 4145 6.596309 AAAATTCTGAAATTCTCCTGGACC 57.404 37.500 0.00 0.00 33.93 4.46
3726 4146 4.934797 ATTCTGAAATTCTCCTGGACCA 57.065 40.909 0.00 0.00 0.00 4.02
3727 4147 4.934797 TTCTGAAATTCTCCTGGACCAT 57.065 40.909 0.00 0.00 0.00 3.55
3728 4148 4.934797 TCTGAAATTCTCCTGGACCATT 57.065 40.909 0.00 0.00 0.00 3.16
3729 4149 4.848357 TCTGAAATTCTCCTGGACCATTC 58.152 43.478 0.00 0.00 0.00 2.67
3730 4150 4.289410 TCTGAAATTCTCCTGGACCATTCA 59.711 41.667 0.00 0.00 0.00 2.57
3731 4151 5.044624 TCTGAAATTCTCCTGGACCATTCAT 60.045 40.000 0.00 0.00 0.00 2.57
3732 4152 4.951715 TGAAATTCTCCTGGACCATTCATG 59.048 41.667 0.00 0.00 0.00 3.07
3733 4153 2.425143 TTCTCCTGGACCATTCATGC 57.575 50.000 0.00 0.00 0.00 4.06
3734 4154 1.288188 TCTCCTGGACCATTCATGCA 58.712 50.000 0.00 0.00 0.00 3.96
3735 4155 1.065199 TCTCCTGGACCATTCATGCAC 60.065 52.381 0.00 0.00 0.00 4.57
3736 4156 0.697658 TCCTGGACCATTCATGCACA 59.302 50.000 0.00 0.00 0.00 4.57
3737 4157 0.813184 CCTGGACCATTCATGCACAC 59.187 55.000 0.00 0.00 0.00 3.82
3738 4158 1.536940 CTGGACCATTCATGCACACA 58.463 50.000 0.00 0.00 0.00 3.72
3739 4159 2.097036 CTGGACCATTCATGCACACAT 58.903 47.619 0.00 0.00 36.79 3.21
3753 4173 2.245159 ACACATGTGAGTGGTGTGAG 57.755 50.000 31.94 1.10 44.48 3.51
3754 4174 1.486310 ACACATGTGAGTGGTGTGAGT 59.514 47.619 31.94 1.87 44.48 3.41
3755 4175 1.869132 CACATGTGAGTGGTGTGAGTG 59.131 52.381 21.64 0.00 44.48 3.51
3756 4176 1.762370 ACATGTGAGTGGTGTGAGTGA 59.238 47.619 0.00 0.00 0.00 3.41
3757 4177 2.224137 ACATGTGAGTGGTGTGAGTGAG 60.224 50.000 0.00 0.00 0.00 3.51
3758 4178 1.775385 TGTGAGTGGTGTGAGTGAGA 58.225 50.000 0.00 0.00 0.00 3.27
3759 4179 1.409064 TGTGAGTGGTGTGAGTGAGAC 59.591 52.381 0.00 0.00 0.00 3.36
3760 4180 1.683917 GTGAGTGGTGTGAGTGAGACT 59.316 52.381 0.00 0.00 0.00 3.24
3761 4181 2.885266 GTGAGTGGTGTGAGTGAGACTA 59.115 50.000 0.00 0.00 0.00 2.59
3762 4182 3.318275 GTGAGTGGTGTGAGTGAGACTAA 59.682 47.826 0.00 0.00 0.00 2.24
3763 4183 3.958147 TGAGTGGTGTGAGTGAGACTAAA 59.042 43.478 0.00 0.00 0.00 1.85
3764 4184 4.038042 TGAGTGGTGTGAGTGAGACTAAAG 59.962 45.833 0.00 0.00 0.00 1.85
3765 4185 3.961408 AGTGGTGTGAGTGAGACTAAAGT 59.039 43.478 0.00 0.00 0.00 2.66
3766 4186 4.406003 AGTGGTGTGAGTGAGACTAAAGTT 59.594 41.667 0.00 0.00 0.00 2.66
3767 4187 5.104900 AGTGGTGTGAGTGAGACTAAAGTTT 60.105 40.000 0.00 0.00 0.00 2.66
3768 4188 6.097839 AGTGGTGTGAGTGAGACTAAAGTTTA 59.902 38.462 0.00 0.00 0.00 2.01
3769 4189 6.421202 GTGGTGTGAGTGAGACTAAAGTTTAG 59.579 42.308 19.07 19.07 0.00 1.85
3770 4190 6.097839 TGGTGTGAGTGAGACTAAAGTTTAGT 59.902 38.462 24.91 24.91 0.00 2.24
3771 4191 6.641723 GGTGTGAGTGAGACTAAAGTTTAGTC 59.358 42.308 34.14 34.14 43.08 2.59
3772 4192 6.641723 GTGTGAGTGAGACTAAAGTTTAGTCC 59.358 42.308 35.91 29.29 43.61 3.85
3773 4193 6.157904 GTGAGTGAGACTAAAGTTTAGTCCC 58.842 44.000 35.91 29.95 43.61 4.46
3774 4194 5.836898 TGAGTGAGACTAAAGTTTAGTCCCA 59.163 40.000 35.91 31.63 43.61 4.37
3775 4195 6.099159 AGTGAGACTAAAGTTTAGTCCCAC 57.901 41.667 37.99 37.99 46.75 4.61
3776 4196 5.236282 GTGAGACTAAAGTTTAGTCCCACC 58.764 45.833 36.58 26.33 43.22 4.61
3777 4197 4.285260 TGAGACTAAAGTTTAGTCCCACCC 59.715 45.833 35.91 24.74 43.61 4.61
3778 4198 3.586174 AGACTAAAGTTTAGTCCCACCCC 59.414 47.826 35.91 20.13 43.61 4.95
3779 4199 3.328637 GACTAAAGTTTAGTCCCACCCCA 59.671 47.826 32.40 0.00 38.33 4.96
3780 4200 2.971901 AAAGTTTAGTCCCACCCCAG 57.028 50.000 0.00 0.00 0.00 4.45
3781 4201 2.127651 AAGTTTAGTCCCACCCCAGA 57.872 50.000 0.00 0.00 0.00 3.86
3782 4202 2.127651 AGTTTAGTCCCACCCCAGAA 57.872 50.000 0.00 0.00 0.00 3.02
3783 4203 1.985895 AGTTTAGTCCCACCCCAGAAG 59.014 52.381 0.00 0.00 0.00 2.85
3784 4204 1.703513 GTTTAGTCCCACCCCAGAAGT 59.296 52.381 0.00 0.00 0.00 3.01
3785 4205 2.107726 GTTTAGTCCCACCCCAGAAGTT 59.892 50.000 0.00 0.00 0.00 2.66
3786 4206 1.358152 TAGTCCCACCCCAGAAGTTG 58.642 55.000 0.00 0.00 0.00 3.16
3787 4207 0.401395 AGTCCCACCCCAGAAGTTGA 60.401 55.000 0.00 0.00 0.00 3.18
3788 4208 0.036875 GTCCCACCCCAGAAGTTGAG 59.963 60.000 0.00 0.00 0.00 3.02
3789 4209 0.104672 TCCCACCCCAGAAGTTGAGA 60.105 55.000 0.00 0.00 0.00 3.27
3790 4210 0.771127 CCCACCCCAGAAGTTGAGAA 59.229 55.000 0.00 0.00 0.00 2.87
3791 4211 1.271597 CCCACCCCAGAAGTTGAGAAG 60.272 57.143 0.00 0.00 0.00 2.85
3792 4212 1.271597 CCACCCCAGAAGTTGAGAAGG 60.272 57.143 0.00 0.00 0.00 3.46
3793 4213 1.699634 CACCCCAGAAGTTGAGAAGGA 59.300 52.381 0.00 0.00 0.00 3.36
3794 4214 1.981495 ACCCCAGAAGTTGAGAAGGAG 59.019 52.381 0.00 0.00 0.00 3.69
3795 4215 1.981495 CCCCAGAAGTTGAGAAGGAGT 59.019 52.381 0.00 0.00 0.00 3.85
3796 4216 2.373502 CCCCAGAAGTTGAGAAGGAGTT 59.626 50.000 0.00 0.00 0.00 3.01
3797 4217 3.406764 CCCAGAAGTTGAGAAGGAGTTG 58.593 50.000 0.00 0.00 0.00 3.16
3798 4218 2.810852 CCAGAAGTTGAGAAGGAGTTGC 59.189 50.000 0.00 0.00 0.00 4.17
3799 4219 3.470709 CAGAAGTTGAGAAGGAGTTGCA 58.529 45.455 0.00 0.00 0.00 4.08
3800 4220 4.070716 CAGAAGTTGAGAAGGAGTTGCAT 58.929 43.478 0.00 0.00 0.00 3.96
3801 4221 4.153835 CAGAAGTTGAGAAGGAGTTGCATC 59.846 45.833 0.00 0.00 0.00 3.91
3802 4222 4.041444 AGAAGTTGAGAAGGAGTTGCATCT 59.959 41.667 0.00 0.00 0.00 2.90
3803 4223 3.936564 AGTTGAGAAGGAGTTGCATCTC 58.063 45.455 15.21 15.21 38.98 2.75
3804 4224 3.582208 AGTTGAGAAGGAGTTGCATCTCT 59.418 43.478 21.15 5.62 39.21 3.10
3805 4225 4.041444 AGTTGAGAAGGAGTTGCATCTCTT 59.959 41.667 21.15 13.23 39.21 2.85
3806 4226 4.630644 TGAGAAGGAGTTGCATCTCTTT 57.369 40.909 18.88 18.88 39.21 2.52
3807 4227 5.745312 TGAGAAGGAGTTGCATCTCTTTA 57.255 39.130 18.85 4.75 39.21 1.85
3808 4228 6.305272 TGAGAAGGAGTTGCATCTCTTTAT 57.695 37.500 18.85 16.65 39.21 1.40
3809 4229 7.423844 TGAGAAGGAGTTGCATCTCTTTATA 57.576 36.000 18.85 8.35 39.21 0.98
3810 4230 7.851228 TGAGAAGGAGTTGCATCTCTTTATAA 58.149 34.615 18.85 9.11 39.21 0.98
3811 4231 7.984050 TGAGAAGGAGTTGCATCTCTTTATAAG 59.016 37.037 18.85 0.00 39.21 1.73
3812 4232 7.278875 AGAAGGAGTTGCATCTCTTTATAAGG 58.721 38.462 18.85 0.00 34.68 2.69
3813 4233 6.567602 AGGAGTTGCATCTCTTTATAAGGT 57.432 37.500 21.15 0.00 35.11 3.50
3814 4234 6.352516 AGGAGTTGCATCTCTTTATAAGGTG 58.647 40.000 21.15 0.00 35.11 4.00
3815 4235 6.156949 AGGAGTTGCATCTCTTTATAAGGTGA 59.843 38.462 21.15 2.34 35.11 4.02
3816 4236 6.481644 GGAGTTGCATCTCTTTATAAGGTGAG 59.518 42.308 21.15 5.93 35.11 3.51
3817 4237 5.819901 AGTTGCATCTCTTTATAAGGTGAGC 59.180 40.000 5.71 8.77 0.00 4.26
3818 4238 5.620738 TGCATCTCTTTATAAGGTGAGCT 57.379 39.130 15.21 0.00 0.00 4.09
3819 4239 5.605534 TGCATCTCTTTATAAGGTGAGCTC 58.394 41.667 6.82 6.82 0.00 4.09
3820 4240 5.365025 TGCATCTCTTTATAAGGTGAGCTCT 59.635 40.000 16.19 0.00 0.00 4.09
3821 4241 6.126940 TGCATCTCTTTATAAGGTGAGCTCTT 60.127 38.462 16.19 3.45 0.00 2.85
3822 4242 6.423604 GCATCTCTTTATAAGGTGAGCTCTTC 59.576 42.308 16.19 8.05 0.00 2.87
3823 4243 7.686615 GCATCTCTTTATAAGGTGAGCTCTTCT 60.687 40.741 16.19 9.33 0.00 2.85
3824 4244 8.855110 CATCTCTTTATAAGGTGAGCTCTTCTA 58.145 37.037 16.19 1.75 0.00 2.10
3825 4245 8.228035 TCTCTTTATAAGGTGAGCTCTTCTAC 57.772 38.462 16.19 4.19 0.00 2.59
3826 4246 7.285858 TCTCTTTATAAGGTGAGCTCTTCTACC 59.714 40.741 16.19 13.86 0.00 3.18
3827 4247 6.895756 TCTTTATAAGGTGAGCTCTTCTACCA 59.104 38.462 19.88 4.08 35.66 3.25
3828 4248 6.466885 TTATAAGGTGAGCTCTTCTACCAC 57.533 41.667 19.88 7.23 35.66 4.16
3829 4249 2.614134 AGGTGAGCTCTTCTACCACT 57.386 50.000 19.88 1.18 35.66 4.00
3830 4250 2.896039 AGGTGAGCTCTTCTACCACTT 58.104 47.619 19.88 1.52 35.66 3.16
3831 4251 2.564947 AGGTGAGCTCTTCTACCACTTG 59.435 50.000 19.88 0.00 35.66 3.16
3832 4252 2.300437 GGTGAGCTCTTCTACCACTTGT 59.700 50.000 16.19 0.00 33.42 3.16
3833 4253 3.510360 GGTGAGCTCTTCTACCACTTGTA 59.490 47.826 16.19 0.00 33.42 2.41
3834 4254 4.160626 GGTGAGCTCTTCTACCACTTGTAT 59.839 45.833 16.19 0.00 33.42 2.29
3835 4255 5.105752 GTGAGCTCTTCTACCACTTGTATG 58.894 45.833 16.19 0.00 0.00 2.39
3836 4256 5.016831 TGAGCTCTTCTACCACTTGTATGA 58.983 41.667 16.19 0.00 0.00 2.15
3837 4257 5.126222 TGAGCTCTTCTACCACTTGTATGAG 59.874 44.000 16.19 0.00 0.00 2.90
3838 4258 4.116238 GCTCTTCTACCACTTGTATGAGC 58.884 47.826 0.00 0.00 38.61 4.26
3839 4259 4.382040 GCTCTTCTACCACTTGTATGAGCA 60.382 45.833 0.00 0.00 41.54 4.26
3840 4260 5.683509 GCTCTTCTACCACTTGTATGAGCAT 60.684 44.000 0.00 0.00 41.54 3.79
3841 4261 5.664457 TCTTCTACCACTTGTATGAGCATG 58.336 41.667 0.00 0.00 0.00 4.06
3842 4262 5.422012 TCTTCTACCACTTGTATGAGCATGA 59.578 40.000 0.00 0.00 0.00 3.07
3843 4263 5.268118 TCTACCACTTGTATGAGCATGAG 57.732 43.478 0.00 0.00 0.00 2.90
3844 4264 4.956075 TCTACCACTTGTATGAGCATGAGA 59.044 41.667 0.00 0.00 0.00 3.27
3845 4265 4.558226 ACCACTTGTATGAGCATGAGAA 57.442 40.909 0.00 0.00 0.00 2.87
3846 4266 4.511527 ACCACTTGTATGAGCATGAGAAG 58.488 43.478 0.00 0.00 0.00 2.85
3847 4267 4.223700 ACCACTTGTATGAGCATGAGAAGA 59.776 41.667 0.00 0.00 0.00 2.87
3848 4268 4.809958 CCACTTGTATGAGCATGAGAAGAG 59.190 45.833 0.00 0.00 0.00 2.85
3849 4269 4.809958 CACTTGTATGAGCATGAGAAGAGG 59.190 45.833 0.00 0.00 0.00 3.69
3850 4270 4.713814 ACTTGTATGAGCATGAGAAGAGGA 59.286 41.667 0.00 0.00 0.00 3.71
3851 4271 4.933505 TGTATGAGCATGAGAAGAGGAG 57.066 45.455 0.00 0.00 0.00 3.69
3852 4272 4.540715 TGTATGAGCATGAGAAGAGGAGA 58.459 43.478 0.00 0.00 0.00 3.71
3853 4273 4.340666 TGTATGAGCATGAGAAGAGGAGAC 59.659 45.833 0.00 0.00 0.00 3.36
3854 4274 2.106566 TGAGCATGAGAAGAGGAGACC 58.893 52.381 0.00 0.00 0.00 3.85
3855 4275 2.292126 TGAGCATGAGAAGAGGAGACCT 60.292 50.000 0.00 0.00 36.03 3.85
3856 4276 3.053320 TGAGCATGAGAAGAGGAGACCTA 60.053 47.826 0.00 0.00 31.76 3.08
3857 4277 3.295973 AGCATGAGAAGAGGAGACCTAC 58.704 50.000 0.00 0.00 31.76 3.18
3858 4278 3.027412 GCATGAGAAGAGGAGACCTACA 58.973 50.000 0.00 0.00 31.76 2.74
3859 4279 3.181480 GCATGAGAAGAGGAGACCTACAC 60.181 52.174 0.00 0.00 31.76 2.90
3860 4280 2.712709 TGAGAAGAGGAGACCTACACG 58.287 52.381 0.00 0.00 31.76 4.49
3861 4281 1.402613 GAGAAGAGGAGACCTACACGC 59.597 57.143 0.00 0.00 31.76 5.34
3862 4282 1.004979 AGAAGAGGAGACCTACACGCT 59.995 52.381 0.00 0.00 31.76 5.07
3863 4283 1.402613 GAAGAGGAGACCTACACGCTC 59.597 57.143 0.00 0.00 31.76 5.03
3864 4284 0.745128 AGAGGAGACCTACACGCTCG 60.745 60.000 0.00 0.00 31.76 5.03
3865 4285 2.102553 GGAGACCTACACGCTCGC 59.897 66.667 0.00 0.00 0.00 5.03
3866 4286 2.102553 GAGACCTACACGCTCGCC 59.897 66.667 0.00 0.00 0.00 5.54
3867 4287 2.675423 AGACCTACACGCTCGCCA 60.675 61.111 0.00 0.00 0.00 5.69
3868 4288 2.506438 GACCTACACGCTCGCCAC 60.506 66.667 0.00 0.00 0.00 5.01
3869 4289 4.415332 ACCTACACGCTCGCCACG 62.415 66.667 0.00 0.00 0.00 4.94
3900 4320 4.096003 CGACCCGGGTTGCAGGAT 62.096 66.667 30.89 0.05 0.00 3.24
3901 4321 2.355115 GACCCGGGTTGCAGGATT 59.645 61.111 30.89 0.00 0.00 3.01
3902 4322 2.035626 ACCCGGGTTGCAGGATTG 59.964 61.111 24.16 0.00 0.00 2.67
3903 4323 2.354729 CCCGGGTTGCAGGATTGA 59.645 61.111 14.18 0.00 0.00 2.57
3904 4324 1.750399 CCCGGGTTGCAGGATTGAG 60.750 63.158 14.18 0.00 0.00 3.02
3905 4325 2.409870 CCGGGTTGCAGGATTGAGC 61.410 63.158 0.00 0.00 0.00 4.26
3906 4326 2.409870 CGGGTTGCAGGATTGAGCC 61.410 63.158 0.00 0.00 0.00 4.70
3907 4327 2.409870 GGGTTGCAGGATTGAGCCG 61.410 63.158 0.00 0.00 0.00 5.52
3908 4328 1.377202 GGTTGCAGGATTGAGCCGA 60.377 57.895 0.00 0.00 0.00 5.54
3909 4329 1.372087 GGTTGCAGGATTGAGCCGAG 61.372 60.000 0.00 0.00 0.00 4.63
3910 4330 1.746615 TTGCAGGATTGAGCCGAGC 60.747 57.895 0.00 0.00 35.37 5.03
3911 4331 2.899339 GCAGGATTGAGCCGAGCC 60.899 66.667 0.00 0.00 0.00 4.70
3912 4332 2.587194 CAGGATTGAGCCGAGCCG 60.587 66.667 0.00 0.00 0.00 5.52
3913 4333 2.759973 AGGATTGAGCCGAGCCGA 60.760 61.111 0.00 0.00 0.00 5.54
3914 4334 2.279784 GGATTGAGCCGAGCCGAG 60.280 66.667 0.00 0.00 0.00 4.63
3915 4335 2.279784 GATTGAGCCGAGCCGAGG 60.280 66.667 0.00 0.00 0.00 4.63
3916 4336 2.759973 ATTGAGCCGAGCCGAGGA 60.760 61.111 0.00 0.00 0.00 3.71
3917 4337 2.962697 GATTGAGCCGAGCCGAGGAC 62.963 65.000 0.00 0.00 0.00 3.85
3919 4339 4.200283 GAGCCGAGCCGAGGACAG 62.200 72.222 0.00 0.00 0.00 3.51
3920 4340 4.742649 AGCCGAGCCGAGGACAGA 62.743 66.667 0.00 0.00 0.00 3.41
3921 4341 4.200283 GCCGAGCCGAGGACAGAG 62.200 72.222 0.00 0.00 0.00 3.35
3922 4342 4.200283 CCGAGCCGAGGACAGAGC 62.200 72.222 0.00 0.00 0.00 4.09
3923 4343 3.137459 CGAGCCGAGGACAGAGCT 61.137 66.667 0.00 0.00 38.56 4.09
3924 4344 1.820056 CGAGCCGAGGACAGAGCTA 60.820 63.158 0.00 0.00 35.23 3.32
3925 4345 1.169661 CGAGCCGAGGACAGAGCTAT 61.170 60.000 0.00 0.00 35.23 2.97
3926 4346 0.313672 GAGCCGAGGACAGAGCTATG 59.686 60.000 6.84 6.84 35.23 2.23
3927 4347 1.300542 GCCGAGGACAGAGCTATGC 60.301 63.158 8.60 1.04 0.00 3.14
3928 4348 2.021068 GCCGAGGACAGAGCTATGCA 62.021 60.000 8.60 0.00 0.00 3.96
3929 4349 0.249238 CCGAGGACAGAGCTATGCAC 60.249 60.000 8.60 1.13 0.00 4.57
3930 4350 0.457443 CGAGGACAGAGCTATGCACA 59.543 55.000 8.60 0.00 0.00 4.57
3931 4351 1.068281 CGAGGACAGAGCTATGCACAT 59.932 52.381 8.60 0.20 0.00 3.21
3932 4352 2.482664 CGAGGACAGAGCTATGCACATT 60.483 50.000 8.60 0.00 0.00 2.71
3933 4353 3.243535 CGAGGACAGAGCTATGCACATTA 60.244 47.826 8.60 0.00 0.00 1.90
3934 4354 4.560311 CGAGGACAGAGCTATGCACATTAT 60.560 45.833 8.60 0.00 0.00 1.28
3935 4355 4.892433 AGGACAGAGCTATGCACATTATC 58.108 43.478 8.60 0.00 0.00 1.75
3936 4356 4.592351 AGGACAGAGCTATGCACATTATCT 59.408 41.667 8.60 0.00 0.00 1.98
3937 4357 5.777223 AGGACAGAGCTATGCACATTATCTA 59.223 40.000 8.60 0.00 0.00 1.98
3938 4358 6.440010 AGGACAGAGCTATGCACATTATCTAT 59.560 38.462 8.60 0.00 0.00 1.98
3939 4359 7.617329 AGGACAGAGCTATGCACATTATCTATA 59.383 37.037 8.60 0.00 0.00 1.31
3940 4360 8.420222 GGACAGAGCTATGCACATTATCTATAT 58.580 37.037 8.60 0.00 0.00 0.86
3941 4361 9.814899 GACAGAGCTATGCACATTATCTATATT 57.185 33.333 8.60 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.402259 CTTACGCACGATCTCCACTCT 59.598 52.381 0.00 0.00 0.00 3.24
1 2 1.132643 ACTTACGCACGATCTCCACTC 59.867 52.381 0.00 0.00 0.00 3.51
17 18 3.135994 GGCAACCTCGAACTCAAACTTA 58.864 45.455 0.00 0.00 0.00 2.24
18 19 1.947456 GGCAACCTCGAACTCAAACTT 59.053 47.619 0.00 0.00 0.00 2.66
35 36 0.250684 TTGTGCTCTGAATTCCGGCA 60.251 50.000 2.27 7.87 0.00 5.69
73 74 2.587753 ACATATTGCGTCGGCGGG 60.588 61.111 13.05 0.00 44.10 6.13
103 104 2.551032 GCCACCGCCATAAAATACTACC 59.449 50.000 0.00 0.00 0.00 3.18
105 106 2.485903 CGCCACCGCCATAAAATACTA 58.514 47.619 0.00 0.00 0.00 1.82
171 268 1.602237 GCTCTTTGACCCCATCGGA 59.398 57.895 0.00 0.00 34.64 4.55
205 303 3.690460 ACCAATCTTCACTTCATGTCCC 58.310 45.455 0.00 0.00 0.00 4.46
252 350 5.815581 TGACTAGGCTTAAAATGGATGTGT 58.184 37.500 0.00 0.00 0.00 3.72
367 465 7.929785 TGCCTAGCCTAAATATGTTACTGTAAC 59.070 37.037 20.87 20.87 39.11 2.50
482 580 9.191479 TCTGGGTTTTGTTTATTCTCTAACAAA 57.809 29.630 8.56 8.56 46.61 2.83
498 596 7.466746 TCTAGGAATTTTGATCTGGGTTTTG 57.533 36.000 0.00 0.00 0.00 2.44
558 656 5.124457 TGGTAGTACAATGAACTAGGACGAC 59.876 44.000 2.06 0.00 30.26 4.34
578 676 4.040047 AGGAGATTGTGTGATCCATGGTA 58.960 43.478 12.58 0.00 34.08 3.25
579 677 2.848694 AGGAGATTGTGTGATCCATGGT 59.151 45.455 12.58 0.00 34.08 3.55
580 678 3.474600 GAGGAGATTGTGTGATCCATGG 58.525 50.000 4.97 4.97 34.08 3.66
593 691 1.748591 GCCAATTGAGGCGAGGAGATT 60.749 52.381 7.12 0.00 46.12 2.40
605 703 6.712179 TGCATGTCAATAATAGCCAATTGA 57.288 33.333 7.12 0.00 39.24 2.57
722 858 6.546972 TTTTAATGTGTCTGTTCACGCATA 57.453 33.333 0.30 0.00 44.91 3.14
929 1108 3.848272 TCGGACAAAGGAAAATGCATC 57.152 42.857 0.00 0.00 0.00 3.91
938 1117 4.146564 TGATATACCGATCGGACAAAGGA 58.853 43.478 39.55 16.94 38.96 3.36
948 1127 8.085296 AGAGAGTGTGAATTTGATATACCGATC 58.915 37.037 0.00 0.00 0.00 3.69
1097 1276 1.064505 CAGCCGCGATGATGACAAAAT 59.935 47.619 8.23 0.00 0.00 1.82
1353 1532 4.281941 TCACAGTAGAGCTTCATGAGTTGT 59.718 41.667 0.00 0.00 0.00 3.32
1381 1560 2.853914 GCACGTCGAGAACAAGGC 59.146 61.111 0.00 0.00 0.00 4.35
1382 1561 3.000080 GCGCACGTCGAGAACAAGG 62.000 63.158 0.30 0.00 41.67 3.61
1706 1894 4.023622 TGTTGTCACACCAAATGTTATCCG 60.024 41.667 0.00 0.00 40.64 4.18
2143 2352 1.630244 GACAGTGCAGCCAACGCTAG 61.630 60.000 0.00 0.00 46.25 3.42
2632 3013 4.339530 CCTTGGAGAGACGAGATCATGTAA 59.660 45.833 0.00 0.00 0.00 2.41
2698 3079 6.209391 CCATAGGTGAACAATTTTCTTCCACT 59.791 38.462 0.00 0.00 0.00 4.00
2782 3163 1.678635 CGGCCCAGAAATCTGCCAA 60.679 57.895 11.12 0.00 42.47 4.52
2817 3198 1.873591 GCTACATTGTTAGATGGGGCG 59.126 52.381 0.00 0.00 0.00 6.13
2916 3297 1.180029 TTGTAGTACTGGGACGCTCC 58.820 55.000 5.39 0.00 35.23 4.70
2954 3338 3.130160 CCTTGCAGCCTCGCCTTC 61.130 66.667 0.00 0.00 0.00 3.46
3004 3388 9.730420 ATAAACGCAAAGCCTTAAATATACAAG 57.270 29.630 0.00 0.00 0.00 3.16
3129 3539 4.380531 CAAGCCACATGGTAGTATGGTAG 58.619 47.826 0.00 0.00 37.57 3.18
3140 3550 3.953612 ACATACATAACCAAGCCACATGG 59.046 43.478 0.00 0.00 43.84 3.66
3141 3551 5.008613 GGTACATACATAACCAAGCCACATG 59.991 44.000 0.00 0.00 33.28 3.21
3142 3552 5.130350 GGTACATACATAACCAAGCCACAT 58.870 41.667 0.00 0.00 33.28 3.21
3143 3553 4.019231 TGGTACATACATAACCAAGCCACA 60.019 41.667 0.00 0.00 40.28 4.17
3197 3607 3.622163 TGCAACCAAAGCAACAAAATCAG 59.378 39.130 0.00 0.00 39.39 2.90
3272 3686 6.313519 AGAAATCTTATCCCTAGTGCAACA 57.686 37.500 0.00 0.00 41.43 3.33
3453 3867 9.445878 GTTTACATCCCTAAGTTAACTTAAGCT 57.554 33.333 24.46 11.11 37.92 3.74
3483 3897 8.224620 AGATCATAAGTGGGCTTAAATAGGAT 57.775 34.615 0.00 0.00 40.22 3.24
3518 3932 7.747357 CACAAGTCACGTTTAGTTAGTTTTTGT 59.253 33.333 0.00 0.00 0.00 2.83
3573 3987 6.127563 ACTGCTAAGAAGAGGAGTTAGCTTAC 60.128 42.308 12.98 0.00 44.88 2.34
3604 4022 2.030805 GCTTCCAAACAGTCCATGTGTC 60.031 50.000 0.00 0.00 43.00 3.67
3637 4055 3.609853 GCATAACCATGAAGACAGTCCA 58.390 45.455 0.00 0.00 33.67 4.02
3638 4056 2.609459 CGCATAACCATGAAGACAGTCC 59.391 50.000 0.00 0.00 33.67 3.85
3641 4061 3.002791 ACACGCATAACCATGAAGACAG 58.997 45.455 0.00 0.00 33.67 3.51
3655 4075 2.818130 AGCAAAATTCCAACACGCAT 57.182 40.000 0.00 0.00 0.00 4.73
3660 4080 6.588719 AAGCATACTAGCAAAATTCCAACA 57.411 33.333 0.00 0.00 36.85 3.33
3661 4081 7.148590 CCAAAAGCATACTAGCAAAATTCCAAC 60.149 37.037 0.00 0.00 36.85 3.77
3662 4082 6.873076 CCAAAAGCATACTAGCAAAATTCCAA 59.127 34.615 0.00 0.00 36.85 3.53
3663 4083 6.397272 CCAAAAGCATACTAGCAAAATTCCA 58.603 36.000 0.00 0.00 36.85 3.53
3664 4084 5.291858 GCCAAAAGCATACTAGCAAAATTCC 59.708 40.000 0.00 0.00 42.97 3.01
3665 4085 5.291858 GGCCAAAAGCATACTAGCAAAATTC 59.708 40.000 0.00 0.00 46.50 2.17
3666 4086 5.178061 GGCCAAAAGCATACTAGCAAAATT 58.822 37.500 0.00 0.00 46.50 1.82
3667 4087 4.383010 GGGCCAAAAGCATACTAGCAAAAT 60.383 41.667 4.39 0.00 46.50 1.82
3668 4088 3.056179 GGGCCAAAAGCATACTAGCAAAA 60.056 43.478 4.39 0.00 46.50 2.44
3669 4089 2.495669 GGGCCAAAAGCATACTAGCAAA 59.504 45.455 4.39 0.00 46.50 3.68
3670 4090 2.099405 GGGCCAAAAGCATACTAGCAA 58.901 47.619 4.39 0.00 46.50 3.91
3671 4091 1.005332 TGGGCCAAAAGCATACTAGCA 59.995 47.619 2.13 0.00 46.50 3.49
3672 4092 1.762708 TGGGCCAAAAGCATACTAGC 58.237 50.000 2.13 0.00 46.50 3.42
3673 4093 4.016444 TCTTTGGGCCAAAAGCATACTAG 58.984 43.478 30.00 16.39 46.50 2.57
3674 4094 3.761752 GTCTTTGGGCCAAAAGCATACTA 59.238 43.478 30.00 6.54 46.50 1.82
3675 4095 2.562738 GTCTTTGGGCCAAAAGCATACT 59.437 45.455 30.00 0.00 46.50 2.12
3676 4096 2.353704 GGTCTTTGGGCCAAAAGCATAC 60.354 50.000 30.00 18.57 46.50 2.39
3677 4097 1.899142 GGTCTTTGGGCCAAAAGCATA 59.101 47.619 30.00 8.02 46.50 3.14
3678 4098 0.686789 GGTCTTTGGGCCAAAAGCAT 59.313 50.000 30.00 0.00 46.50 3.79
3679 4099 0.689080 TGGTCTTTGGGCCAAAAGCA 60.689 50.000 30.00 28.17 46.50 3.91
3680 4100 0.467804 TTGGTCTTTGGGCCAAAAGC 59.532 50.000 30.00 26.40 41.28 3.51
3681 4101 1.762370 AGTTGGTCTTTGGGCCAAAAG 59.238 47.619 30.00 24.76 45.13 2.27
3682 4102 1.872773 AGTTGGTCTTTGGGCCAAAA 58.127 45.000 30.00 18.72 45.13 2.44
3683 4103 2.757894 TAGTTGGTCTTTGGGCCAAA 57.242 45.000 28.75 28.75 45.13 3.28
3684 4104 2.757894 TTAGTTGGTCTTTGGGCCAA 57.242 45.000 16.66 16.66 41.90 4.52
3685 4105 2.757894 TTTAGTTGGTCTTTGGGCCA 57.242 45.000 0.00 0.00 0.00 5.36
3686 4106 4.283467 AGAATTTTAGTTGGTCTTTGGGCC 59.717 41.667 0.00 0.00 0.00 5.80
3687 4107 5.010617 TCAGAATTTTAGTTGGTCTTTGGGC 59.989 40.000 0.00 0.00 0.00 5.36
3688 4108 6.648879 TCAGAATTTTAGTTGGTCTTTGGG 57.351 37.500 0.00 0.00 0.00 4.12
3689 4109 9.546428 AATTTCAGAATTTTAGTTGGTCTTTGG 57.454 29.630 0.00 0.00 31.48 3.28
3693 4113 8.797438 GGAGAATTTCAGAATTTTAGTTGGTCT 58.203 33.333 0.00 0.00 35.65 3.85
3694 4114 8.797438 AGGAGAATTTCAGAATTTTAGTTGGTC 58.203 33.333 0.00 0.00 35.65 4.02
3695 4115 8.579863 CAGGAGAATTTCAGAATTTTAGTTGGT 58.420 33.333 0.00 0.00 35.65 3.67
3696 4116 8.031277 CCAGGAGAATTTCAGAATTTTAGTTGG 58.969 37.037 0.00 0.00 35.65 3.77
3697 4117 8.796475 TCCAGGAGAATTTCAGAATTTTAGTTG 58.204 33.333 0.00 0.00 35.65 3.16
3698 4118 8.797438 GTCCAGGAGAATTTCAGAATTTTAGTT 58.203 33.333 0.00 0.00 35.65 2.24
3699 4119 7.394641 GGTCCAGGAGAATTTCAGAATTTTAGT 59.605 37.037 0.00 0.00 35.65 2.24
3700 4120 7.394359 TGGTCCAGGAGAATTTCAGAATTTTAG 59.606 37.037 0.00 0.00 35.65 1.85
3701 4121 7.237982 TGGTCCAGGAGAATTTCAGAATTTTA 58.762 34.615 0.00 0.00 35.65 1.52
3702 4122 6.077322 TGGTCCAGGAGAATTTCAGAATTTT 58.923 36.000 0.00 0.00 35.65 1.82
3703 4123 5.644188 TGGTCCAGGAGAATTTCAGAATTT 58.356 37.500 0.00 0.00 35.65 1.82
3704 4124 5.261040 TGGTCCAGGAGAATTTCAGAATT 57.739 39.130 0.00 0.00 38.16 2.17
3705 4125 4.934797 TGGTCCAGGAGAATTTCAGAAT 57.065 40.909 0.00 0.00 0.00 2.40
3706 4126 4.934797 ATGGTCCAGGAGAATTTCAGAA 57.065 40.909 0.00 0.00 0.00 3.02
3707 4127 4.289410 TGAATGGTCCAGGAGAATTTCAGA 59.711 41.667 0.00 0.00 0.00 3.27
3708 4128 4.592942 TGAATGGTCCAGGAGAATTTCAG 58.407 43.478 0.00 0.00 0.00 3.02
3709 4129 4.656100 TGAATGGTCCAGGAGAATTTCA 57.344 40.909 0.00 0.00 0.00 2.69
3710 4130 4.202090 GCATGAATGGTCCAGGAGAATTTC 60.202 45.833 0.00 0.00 0.00 2.17
3711 4131 3.703052 GCATGAATGGTCCAGGAGAATTT 59.297 43.478 0.00 0.00 0.00 1.82
3712 4132 3.294214 GCATGAATGGTCCAGGAGAATT 58.706 45.455 0.00 0.00 0.00 2.17
3713 4133 2.242965 TGCATGAATGGTCCAGGAGAAT 59.757 45.455 0.00 0.00 0.00 2.40
3714 4134 1.634973 TGCATGAATGGTCCAGGAGAA 59.365 47.619 0.00 0.00 0.00 2.87
3715 4135 1.065199 GTGCATGAATGGTCCAGGAGA 60.065 52.381 0.00 0.00 0.00 3.71
3716 4136 1.340308 TGTGCATGAATGGTCCAGGAG 60.340 52.381 0.00 0.00 0.00 3.69
3717 4137 0.697658 TGTGCATGAATGGTCCAGGA 59.302 50.000 0.00 0.00 0.00 3.86
3718 4138 0.813184 GTGTGCATGAATGGTCCAGG 59.187 55.000 0.00 0.00 0.00 4.45
3719 4139 1.536940 TGTGTGCATGAATGGTCCAG 58.463 50.000 0.00 0.00 0.00 3.86
3720 4140 2.219080 ATGTGTGCATGAATGGTCCA 57.781 45.000 0.00 0.00 33.37 4.02
3730 4150 1.241165 CACCACTCACATGTGTGCAT 58.759 50.000 24.63 9.17 45.25 3.96
3731 4151 0.107263 ACACCACTCACATGTGTGCA 60.107 50.000 24.63 5.64 45.25 4.57
3732 4152 2.706636 ACACCACTCACATGTGTGC 58.293 52.632 24.63 0.00 45.25 4.57
3734 4154 1.486310 ACTCACACCACTCACATGTGT 59.514 47.619 24.63 4.31 43.42 3.72
3735 4155 1.869132 CACTCACACCACTCACATGTG 59.131 52.381 20.18 20.18 44.14 3.21
3736 4156 1.762370 TCACTCACACCACTCACATGT 59.238 47.619 0.00 0.00 0.00 3.21
3737 4157 2.036346 TCTCACTCACACCACTCACATG 59.964 50.000 0.00 0.00 0.00 3.21
3738 4158 2.036475 GTCTCACTCACACCACTCACAT 59.964 50.000 0.00 0.00 0.00 3.21
3739 4159 1.409064 GTCTCACTCACACCACTCACA 59.591 52.381 0.00 0.00 0.00 3.58
3740 4160 1.683917 AGTCTCACTCACACCACTCAC 59.316 52.381 0.00 0.00 0.00 3.51
3741 4161 2.073252 AGTCTCACTCACACCACTCA 57.927 50.000 0.00 0.00 0.00 3.41
3742 4162 4.038162 ACTTTAGTCTCACTCACACCACTC 59.962 45.833 0.00 0.00 0.00 3.51
3743 4163 3.961408 ACTTTAGTCTCACTCACACCACT 59.039 43.478 0.00 0.00 0.00 4.00
3744 4164 4.323553 ACTTTAGTCTCACTCACACCAC 57.676 45.455 0.00 0.00 0.00 4.16
3745 4165 5.353394 AAACTTTAGTCTCACTCACACCA 57.647 39.130 0.00 0.00 0.00 4.17
3746 4166 6.514063 ACTAAACTTTAGTCTCACTCACACC 58.486 40.000 8.19 0.00 0.00 4.16
3747 4167 6.641723 GGACTAAACTTTAGTCTCACTCACAC 59.358 42.308 28.74 13.61 42.54 3.82
3748 4168 6.239232 GGGACTAAACTTTAGTCTCACTCACA 60.239 42.308 28.74 0.00 42.92 3.58
3749 4169 6.157904 GGGACTAAACTTTAGTCTCACTCAC 58.842 44.000 28.74 16.70 42.92 3.51
3750 4170 5.836898 TGGGACTAAACTTTAGTCTCACTCA 59.163 40.000 29.15 19.69 46.65 3.41
3751 4171 6.342338 TGGGACTAAACTTTAGTCTCACTC 57.658 41.667 29.15 17.55 46.65 3.51
3755 4175 4.323333 GGGGTGGGACTAAACTTTAGTCTC 60.323 50.000 28.74 27.28 43.52 3.36
3756 4176 3.586174 GGGGTGGGACTAAACTTTAGTCT 59.414 47.826 28.74 6.53 42.54 3.24
3757 4177 3.328637 TGGGGTGGGACTAAACTTTAGTC 59.671 47.826 24.83 24.83 42.28 2.59
3758 4178 3.329277 TGGGGTGGGACTAAACTTTAGT 58.671 45.455 13.09 13.09 0.00 2.24
3759 4179 3.585732 TCTGGGGTGGGACTAAACTTTAG 59.414 47.826 6.96 6.96 0.00 1.85
3760 4180 3.600433 TCTGGGGTGGGACTAAACTTTA 58.400 45.455 0.00 0.00 0.00 1.85
3761 4181 2.424793 TCTGGGGTGGGACTAAACTTT 58.575 47.619 0.00 0.00 0.00 2.66
3762 4182 2.127651 TCTGGGGTGGGACTAAACTT 57.872 50.000 0.00 0.00 0.00 2.66
3763 4183 1.985895 CTTCTGGGGTGGGACTAAACT 59.014 52.381 0.00 0.00 0.00 2.66
3764 4184 1.703513 ACTTCTGGGGTGGGACTAAAC 59.296 52.381 0.00 0.00 0.00 2.01
3765 4185 2.107552 CAACTTCTGGGGTGGGACTAAA 59.892 50.000 0.00 0.00 0.00 1.85
3766 4186 1.702957 CAACTTCTGGGGTGGGACTAA 59.297 52.381 0.00 0.00 0.00 2.24
3767 4187 1.132657 TCAACTTCTGGGGTGGGACTA 60.133 52.381 0.00 0.00 0.00 2.59
3768 4188 0.401395 TCAACTTCTGGGGTGGGACT 60.401 55.000 0.00 0.00 0.00 3.85
3769 4189 0.036875 CTCAACTTCTGGGGTGGGAC 59.963 60.000 0.00 0.00 0.00 4.46
3770 4190 0.104672 TCTCAACTTCTGGGGTGGGA 60.105 55.000 0.00 0.00 0.00 4.37
3771 4191 0.771127 TTCTCAACTTCTGGGGTGGG 59.229 55.000 0.00 0.00 0.00 4.61
3772 4192 1.271597 CCTTCTCAACTTCTGGGGTGG 60.272 57.143 0.00 0.00 0.00 4.61
3773 4193 1.699634 TCCTTCTCAACTTCTGGGGTG 59.300 52.381 0.00 0.00 0.00 4.61
3774 4194 1.981495 CTCCTTCTCAACTTCTGGGGT 59.019 52.381 0.00 0.00 0.00 4.95
3775 4195 1.981495 ACTCCTTCTCAACTTCTGGGG 59.019 52.381 0.00 0.00 0.00 4.96
3776 4196 3.406764 CAACTCCTTCTCAACTTCTGGG 58.593 50.000 0.00 0.00 0.00 4.45
3777 4197 2.810852 GCAACTCCTTCTCAACTTCTGG 59.189 50.000 0.00 0.00 0.00 3.86
3778 4198 3.470709 TGCAACTCCTTCTCAACTTCTG 58.529 45.455 0.00 0.00 0.00 3.02
3779 4199 3.845781 TGCAACTCCTTCTCAACTTCT 57.154 42.857 0.00 0.00 0.00 2.85
3780 4200 4.322567 AGATGCAACTCCTTCTCAACTTC 58.677 43.478 0.00 0.00 0.00 3.01
3781 4201 4.041444 AGAGATGCAACTCCTTCTCAACTT 59.959 41.667 19.34 0.00 38.06 2.66
3782 4202 3.582208 AGAGATGCAACTCCTTCTCAACT 59.418 43.478 19.34 0.00 38.06 3.16
3783 4203 3.936564 AGAGATGCAACTCCTTCTCAAC 58.063 45.455 19.34 0.00 38.06 3.18
3784 4204 4.630644 AAGAGATGCAACTCCTTCTCAA 57.369 40.909 19.34 0.00 38.06 3.02
3785 4205 4.630644 AAAGAGATGCAACTCCTTCTCA 57.369 40.909 19.34 0.00 38.06 3.27
3786 4206 7.440856 CCTTATAAAGAGATGCAACTCCTTCTC 59.559 40.741 19.34 11.96 37.60 2.87
3787 4207 7.092668 ACCTTATAAAGAGATGCAACTCCTTCT 60.093 37.037 19.34 9.00 37.60 2.85
3788 4208 7.011857 CACCTTATAAAGAGATGCAACTCCTTC 59.988 40.741 19.34 0.00 37.60 3.46
3789 4209 6.825721 CACCTTATAAAGAGATGCAACTCCTT 59.174 38.462 19.34 15.43 37.60 3.36
3790 4210 6.156949 TCACCTTATAAAGAGATGCAACTCCT 59.843 38.462 19.34 10.32 37.60 3.69
3791 4211 6.349300 TCACCTTATAAAGAGATGCAACTCC 58.651 40.000 19.34 3.20 37.60 3.85
3792 4212 6.018343 GCTCACCTTATAAAGAGATGCAACTC 60.018 42.308 15.71 15.71 37.19 3.01
3793 4213 5.819901 GCTCACCTTATAAAGAGATGCAACT 59.180 40.000 0.00 0.00 0.00 3.16
3794 4214 5.819901 AGCTCACCTTATAAAGAGATGCAAC 59.180 40.000 11.41 0.00 0.00 4.17
3795 4215 5.994250 AGCTCACCTTATAAAGAGATGCAA 58.006 37.500 11.41 0.00 0.00 4.08
3796 4216 5.365025 AGAGCTCACCTTATAAAGAGATGCA 59.635 40.000 17.77 0.00 0.00 3.96
3797 4217 5.852827 AGAGCTCACCTTATAAAGAGATGC 58.147 41.667 17.77 4.93 0.00 3.91
3798 4218 7.725251 AGAAGAGCTCACCTTATAAAGAGATG 58.275 38.462 17.77 0.00 0.00 2.90
3799 4219 7.912778 AGAAGAGCTCACCTTATAAAGAGAT 57.087 36.000 17.77 6.58 0.00 2.75
3800 4220 7.285858 GGTAGAAGAGCTCACCTTATAAAGAGA 59.714 40.741 17.77 0.00 0.00 3.10
3801 4221 7.068839 TGGTAGAAGAGCTCACCTTATAAAGAG 59.931 40.741 17.77 5.36 32.04 2.85
3802 4222 6.895756 TGGTAGAAGAGCTCACCTTATAAAGA 59.104 38.462 17.77 0.00 32.04 2.52
3803 4223 6.981559 GTGGTAGAAGAGCTCACCTTATAAAG 59.018 42.308 17.77 0.00 32.04 1.85
3804 4224 6.668283 AGTGGTAGAAGAGCTCACCTTATAAA 59.332 38.462 17.77 0.00 32.04 1.40
3805 4225 6.195700 AGTGGTAGAAGAGCTCACCTTATAA 58.804 40.000 17.77 0.00 32.04 0.98
3806 4226 5.767670 AGTGGTAGAAGAGCTCACCTTATA 58.232 41.667 17.77 0.21 32.04 0.98
3807 4227 4.615513 AGTGGTAGAAGAGCTCACCTTAT 58.384 43.478 17.77 1.27 32.04 1.73
3808 4228 4.048970 AGTGGTAGAAGAGCTCACCTTA 57.951 45.455 17.77 0.00 32.04 2.69
3809 4229 2.896039 AGTGGTAGAAGAGCTCACCTT 58.104 47.619 17.77 0.63 32.04 3.50
3810 4230 2.564947 CAAGTGGTAGAAGAGCTCACCT 59.435 50.000 17.77 14.23 32.04 4.00
3811 4231 2.300437 ACAAGTGGTAGAAGAGCTCACC 59.700 50.000 17.77 14.97 0.00 4.02
3812 4232 3.669251 ACAAGTGGTAGAAGAGCTCAC 57.331 47.619 17.77 9.64 0.00 3.51
3813 4233 5.016831 TCATACAAGTGGTAGAAGAGCTCA 58.983 41.667 17.77 0.00 34.92 4.26
3814 4234 5.584253 TCATACAAGTGGTAGAAGAGCTC 57.416 43.478 5.27 5.27 34.92 4.09
3815 4235 4.142049 GCTCATACAAGTGGTAGAAGAGCT 60.142 45.833 16.53 0.00 44.01 4.09
3816 4236 4.116238 GCTCATACAAGTGGTAGAAGAGC 58.884 47.826 11.55 11.55 42.60 4.09
3817 4237 5.330455 TGCTCATACAAGTGGTAGAAGAG 57.670 43.478 0.00 0.00 34.92 2.85
3818 4238 5.422012 TCATGCTCATACAAGTGGTAGAAGA 59.578 40.000 0.00 0.00 34.92 2.87
3819 4239 5.664457 TCATGCTCATACAAGTGGTAGAAG 58.336 41.667 0.00 0.00 34.92 2.85
3820 4240 5.422012 TCTCATGCTCATACAAGTGGTAGAA 59.578 40.000 0.00 0.00 34.92 2.10
3821 4241 4.956075 TCTCATGCTCATACAAGTGGTAGA 59.044 41.667 0.00 0.00 34.92 2.59
3822 4242 5.268118 TCTCATGCTCATACAAGTGGTAG 57.732 43.478 0.00 0.00 34.92 3.18
3823 4243 5.422012 TCTTCTCATGCTCATACAAGTGGTA 59.578 40.000 0.00 0.00 36.16 3.25
3824 4244 4.223700 TCTTCTCATGCTCATACAAGTGGT 59.776 41.667 0.00 0.00 0.00 4.16
3825 4245 4.763073 TCTTCTCATGCTCATACAAGTGG 58.237 43.478 0.00 0.00 0.00 4.00
3826 4246 4.809958 CCTCTTCTCATGCTCATACAAGTG 59.190 45.833 0.00 0.00 0.00 3.16
3827 4247 4.713814 TCCTCTTCTCATGCTCATACAAGT 59.286 41.667 0.00 0.00 0.00 3.16
3828 4248 5.068855 TCTCCTCTTCTCATGCTCATACAAG 59.931 44.000 0.00 0.00 0.00 3.16
3829 4249 4.958581 TCTCCTCTTCTCATGCTCATACAA 59.041 41.667 0.00 0.00 0.00 2.41
3830 4250 4.340666 GTCTCCTCTTCTCATGCTCATACA 59.659 45.833 0.00 0.00 0.00 2.29
3831 4251 4.261994 GGTCTCCTCTTCTCATGCTCATAC 60.262 50.000 0.00 0.00 0.00 2.39
3832 4252 3.894427 GGTCTCCTCTTCTCATGCTCATA 59.106 47.826 0.00 0.00 0.00 2.15
3833 4253 2.699846 GGTCTCCTCTTCTCATGCTCAT 59.300 50.000 0.00 0.00 0.00 2.90
3834 4254 2.106566 GGTCTCCTCTTCTCATGCTCA 58.893 52.381 0.00 0.00 0.00 4.26
3835 4255 2.387757 AGGTCTCCTCTTCTCATGCTC 58.612 52.381 0.00 0.00 0.00 4.26
3836 4256 2.548464 AGGTCTCCTCTTCTCATGCT 57.452 50.000 0.00 0.00 0.00 3.79
3837 4257 3.027412 TGTAGGTCTCCTCTTCTCATGC 58.973 50.000 0.00 0.00 34.61 4.06
3838 4258 3.066064 CGTGTAGGTCTCCTCTTCTCATG 59.934 52.174 0.00 0.00 34.61 3.07
3839 4259 3.283751 CGTGTAGGTCTCCTCTTCTCAT 58.716 50.000 0.00 0.00 34.61 2.90
3840 4260 2.712709 CGTGTAGGTCTCCTCTTCTCA 58.287 52.381 0.00 0.00 34.61 3.27
3841 4261 1.402613 GCGTGTAGGTCTCCTCTTCTC 59.597 57.143 0.00 0.00 34.61 2.87
3842 4262 1.004979 AGCGTGTAGGTCTCCTCTTCT 59.995 52.381 0.00 0.00 34.61 2.85
3843 4263 1.402613 GAGCGTGTAGGTCTCCTCTTC 59.597 57.143 0.00 0.00 43.62 2.87
3844 4264 1.465794 GAGCGTGTAGGTCTCCTCTT 58.534 55.000 0.00 0.00 43.62 2.85
3845 4265 0.745128 CGAGCGTGTAGGTCTCCTCT 60.745 60.000 0.00 0.00 44.71 3.69
3846 4266 1.722677 CGAGCGTGTAGGTCTCCTC 59.277 63.158 0.00 0.00 44.71 3.71
3847 4267 2.408241 GCGAGCGTGTAGGTCTCCT 61.408 63.158 0.00 0.00 44.71 3.69
3848 4268 2.102553 GCGAGCGTGTAGGTCTCC 59.897 66.667 0.00 0.00 44.71 3.71
3849 4269 2.102553 GGCGAGCGTGTAGGTCTC 59.897 66.667 0.00 0.00 44.71 3.36
3850 4270 2.675423 TGGCGAGCGTGTAGGTCT 60.675 61.111 0.00 0.00 44.71 3.85
3851 4271 2.506438 GTGGCGAGCGTGTAGGTC 60.506 66.667 0.00 0.00 43.53 3.85
3852 4272 4.415332 CGTGGCGAGCGTGTAGGT 62.415 66.667 0.00 0.00 0.00 3.08
3883 4303 3.622060 AATCCTGCAACCCGGGTCG 62.622 63.158 30.40 19.46 41.11 4.79
3884 4304 2.046285 CAATCCTGCAACCCGGGTC 61.046 63.158 30.40 16.90 41.11 4.46
3885 4305 2.035626 CAATCCTGCAACCCGGGT 59.964 61.111 24.16 24.16 41.11 5.28
3886 4306 1.750399 CTCAATCCTGCAACCCGGG 60.750 63.158 22.25 22.25 41.74 5.73
3887 4307 2.409870 GCTCAATCCTGCAACCCGG 61.410 63.158 0.00 0.00 0.00 5.73
3888 4308 2.409870 GGCTCAATCCTGCAACCCG 61.410 63.158 0.00 0.00 0.00 5.28
3889 4309 2.409870 CGGCTCAATCCTGCAACCC 61.410 63.158 0.00 0.00 0.00 4.11
3890 4310 1.372087 CTCGGCTCAATCCTGCAACC 61.372 60.000 0.00 0.00 0.00 3.77
3891 4311 1.986575 GCTCGGCTCAATCCTGCAAC 61.987 60.000 0.00 0.00 0.00 4.17
3892 4312 1.746615 GCTCGGCTCAATCCTGCAA 60.747 57.895 0.00 0.00 0.00 4.08
3893 4313 2.124983 GCTCGGCTCAATCCTGCA 60.125 61.111 0.00 0.00 0.00 4.41
3894 4314 2.899339 GGCTCGGCTCAATCCTGC 60.899 66.667 0.00 0.00 0.00 4.85
3895 4315 2.587194 CGGCTCGGCTCAATCCTG 60.587 66.667 0.00 0.00 0.00 3.86
3896 4316 2.759973 TCGGCTCGGCTCAATCCT 60.760 61.111 0.00 0.00 0.00 3.24
3897 4317 2.279784 CTCGGCTCGGCTCAATCC 60.280 66.667 0.00 0.00 0.00 3.01
3898 4318 2.279784 CCTCGGCTCGGCTCAATC 60.280 66.667 0.00 0.00 0.00 2.67
3899 4319 2.759973 TCCTCGGCTCGGCTCAAT 60.760 61.111 0.00 0.00 0.00 2.57
3900 4320 3.760035 GTCCTCGGCTCGGCTCAA 61.760 66.667 0.00 0.00 0.00 3.02
3902 4322 4.200283 CTGTCCTCGGCTCGGCTC 62.200 72.222 0.00 0.00 0.00 4.70
3903 4323 4.742649 TCTGTCCTCGGCTCGGCT 62.743 66.667 0.00 0.00 0.00 5.52
3904 4324 4.200283 CTCTGTCCTCGGCTCGGC 62.200 72.222 0.00 0.00 0.00 5.54
3905 4325 4.200283 GCTCTGTCCTCGGCTCGG 62.200 72.222 0.00 0.00 0.00 4.63
3906 4326 1.169661 ATAGCTCTGTCCTCGGCTCG 61.170 60.000 0.00 0.00 36.40 5.03
3907 4327 0.313672 CATAGCTCTGTCCTCGGCTC 59.686 60.000 0.00 0.00 36.40 4.70
3908 4328 1.743321 GCATAGCTCTGTCCTCGGCT 61.743 60.000 0.00 0.00 38.62 5.52
3909 4329 1.300542 GCATAGCTCTGTCCTCGGC 60.301 63.158 0.00 0.00 0.00 5.54
3910 4330 0.249238 GTGCATAGCTCTGTCCTCGG 60.249 60.000 0.00 0.00 0.00 4.63
3911 4331 0.457443 TGTGCATAGCTCTGTCCTCG 59.543 55.000 0.00 0.00 0.00 4.63
3912 4332 2.906691 ATGTGCATAGCTCTGTCCTC 57.093 50.000 0.00 0.00 0.00 3.71
3913 4333 4.592351 AGATAATGTGCATAGCTCTGTCCT 59.408 41.667 0.00 0.00 0.00 3.85
3914 4334 4.892433 AGATAATGTGCATAGCTCTGTCC 58.108 43.478 0.00 0.00 0.00 4.02
3915 4335 9.814899 AATATAGATAATGTGCATAGCTCTGTC 57.185 33.333 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.