Multiple sequence alignment - TraesCS3B01G489700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G489700 chr3B 100.000 4106 0 0 1 4106 736309632 736313737 0.000000e+00 7583.0
1 TraesCS3B01G489700 chr3B 93.946 1949 93 12 1386 3312 736325017 736326962 0.000000e+00 2922.0
2 TraesCS3B01G489700 chr3B 81.088 772 92 32 454 1194 736324091 736324839 5.960000e-158 568.0
3 TraesCS3B01G489700 chr3B 89.302 215 13 6 744 956 736304514 736304720 1.130000e-65 261.0
4 TraesCS3B01G489700 chr3B 83.621 116 9 6 531 637 736253604 736253718 2.610000e-17 100.0
5 TraesCS3B01G489700 chr3B 97.500 40 1 0 3403 3442 736312934 736312973 7.360000e-08 69.4
6 TraesCS3B01G489700 chr3B 97.500 40 1 0 3303 3342 736313034 736313073 7.360000e-08 69.4
7 TraesCS3B01G489700 chr3D 93.716 3342 156 31 788 4106 554216330 554219640 0.000000e+00 4959.0
8 TraesCS3B01G489700 chr3D 93.936 1979 99 12 1345 3304 554328749 554330725 0.000000e+00 2970.0
9 TraesCS3B01G489700 chr3D 83.889 720 57 29 405 1100 554317271 554317955 2.080000e-177 632.0
10 TraesCS3B01G489700 chr3D 92.523 214 14 2 744 956 554170121 554170333 5.160000e-79 305.0
11 TraesCS3B01G489700 chr3D 81.526 249 32 6 400 637 554169596 554169841 4.190000e-45 193.0
12 TraesCS3B01G489700 chr3A 95.110 3006 121 15 1116 4106 690784749 690787743 0.000000e+00 4713.0
13 TraesCS3B01G489700 chr3A 94.295 2261 102 9 1387 3645 690857627 690859862 0.000000e+00 3435.0
14 TraesCS3B01G489700 chr3A 91.378 2111 127 30 1209 3304 690896500 690898570 0.000000e+00 2839.0
15 TraesCS3B01G489700 chr3A 92.715 1153 45 10 1 1144 690783623 690784745 0.000000e+00 1628.0
16 TraesCS3B01G489700 chr3A 84.424 764 84 23 405 1140 690856861 690857617 0.000000e+00 719.0
17 TraesCS3B01G489700 chr3A 91.096 438 29 3 3679 4106 690860178 690860615 5.910000e-163 584.0
18 TraesCS3B01G489700 chr3A 83.871 434 43 13 761 1189 690896098 690896509 4.980000e-104 388.0
19 TraesCS3B01G489700 chr3A 84.810 316 37 10 650 956 690795986 690796299 1.430000e-79 307.0
20 TraesCS3B01G489700 chr3A 77.801 473 72 19 274 728 690895580 690896037 1.130000e-65 261.0
21 TraesCS3B01G489700 chr3A 88.263 213 16 5 744 956 690752830 690753033 3.170000e-61 246.0
22 TraesCS3B01G489700 chr3A 77.062 388 46 24 274 625 690751818 690752198 2.520000e-42 183.0
23 TraesCS3B01G489700 chr3A 95.455 44 1 1 3400 3442 690859516 690859559 7.360000e-08 69.4
24 TraesCS3B01G489700 chr1D 92.113 1699 134 0 1431 3129 78066947 78065249 0.000000e+00 2396.0
25 TraesCS3B01G489700 chr1D 88.652 141 12 4 1 139 139138474 139138612 7.060000e-38 169.0
26 TraesCS3B01G489700 chr1D 82.090 201 32 4 51 248 384467260 384467061 7.060000e-38 169.0
27 TraesCS3B01G489700 chr1D 84.286 70 7 3 1389 1458 78067039 78066974 9.530000e-07 65.8
28 TraesCS3B01G489700 chr1A 90.315 1714 156 6 1419 3129 105302965 105304671 0.000000e+00 2237.0
29 TraesCS3B01G489700 chr1A 88.406 1449 166 2 1681 3129 109416571 109415125 0.000000e+00 1744.0
30 TraesCS3B01G489700 chr1A 87.857 140 14 3 1 139 152406100 152405963 1.180000e-35 161.0
31 TraesCS3B01G489700 chr1A 85.246 122 16 2 128 248 258106098 258106218 1.550000e-24 124.0
32 TraesCS3B01G489700 chr2A 83.665 251 35 6 1 248 194664421 194664668 8.880000e-57 231.0
33 TraesCS3B01G489700 chr5B 83.200 250 37 5 1 247 524453021 524452774 1.490000e-54 224.0
34 TraesCS3B01G489700 chr5B 82.800 250 38 5 1 247 524554886 524554639 6.910000e-53 219.0
35 TraesCS3B01G489700 chr7D 82.386 176 27 4 72 244 151011544 151011370 2.560000e-32 150.0
36 TraesCS3B01G489700 chr4B 80.503 159 25 5 90 245 370982848 370982693 2.590000e-22 117.0
37 TraesCS3B01G489700 chr2D 78.022 182 34 6 51 228 543287898 543288077 4.340000e-20 110.0
38 TraesCS3B01G489700 chr2D 80.392 102 19 1 3822 3922 106142758 106142657 4.400000e-10 76.8
39 TraesCS3B01G489700 chr4D 78.431 153 30 3 94 245 298928884 298928734 3.380000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G489700 chr3B 736309632 736313737 4105 False 2573.933333 7583 98.333333 1 4106 3 chr3B.!!$F3 4105
1 TraesCS3B01G489700 chr3B 736324091 736326962 2871 False 1745.000000 2922 87.517000 454 3312 2 chr3B.!!$F4 2858
2 TraesCS3B01G489700 chr3D 554216330 554219640 3310 False 4959.000000 4959 93.716000 788 4106 1 chr3D.!!$F1 3318
3 TraesCS3B01G489700 chr3D 554328749 554330725 1976 False 2970.000000 2970 93.936000 1345 3304 1 chr3D.!!$F3 1959
4 TraesCS3B01G489700 chr3D 554317271 554317955 684 False 632.000000 632 83.889000 405 1100 1 chr3D.!!$F2 695
5 TraesCS3B01G489700 chr3D 554169596 554170333 737 False 249.000000 305 87.024500 400 956 2 chr3D.!!$F4 556
6 TraesCS3B01G489700 chr3A 690783623 690787743 4120 False 3170.500000 4713 93.912500 1 4106 2 chr3A.!!$F3 4105
7 TraesCS3B01G489700 chr3A 690856861 690860615 3754 False 1201.850000 3435 91.317500 405 4106 4 chr3A.!!$F4 3701
8 TraesCS3B01G489700 chr3A 690895580 690898570 2990 False 1162.666667 2839 84.350000 274 3304 3 chr3A.!!$F5 3030
9 TraesCS3B01G489700 chr3A 690751818 690753033 1215 False 214.500000 246 82.662500 274 956 2 chr3A.!!$F2 682
10 TraesCS3B01G489700 chr1D 78065249 78067039 1790 True 1230.900000 2396 88.199500 1389 3129 2 chr1D.!!$R2 1740
11 TraesCS3B01G489700 chr1A 105302965 105304671 1706 False 2237.000000 2237 90.315000 1419 3129 1 chr1A.!!$F1 1710
12 TraesCS3B01G489700 chr1A 109415125 109416571 1446 True 1744.000000 1744 88.406000 1681 3129 1 chr1A.!!$R1 1448


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 962 0.033228 CATGAAGCCTCGCCTCTAGG 59.967 60.000 0.00 0.0 37.17 3.02 F
877 1480 0.899720 TAGGATTCCGACGCCTTGTT 59.100 50.000 0.00 0.0 33.28 2.83 F
1911 2677 1.443702 CGACGACAATCCGCTGTCA 60.444 57.895 4.88 0.0 45.03 3.58 F
2736 3503 1.005394 CCGCTACAACACCTCGGTT 60.005 57.895 0.00 0.0 35.75 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2043 2809 0.321298 GCCCAGCGACCTTGAAGTAA 60.321 55.000 0.00 0.0 0.0 2.24 R
2106 2872 2.029380 TGTCACCATGTCCGTCTTGTAG 60.029 50.000 0.00 0.0 0.0 2.74 R
3082 3849 1.001641 GCTGAGTGAGGCCATTGGT 60.002 57.895 5.01 0.0 0.0 3.67 R
3789 4879 1.677217 GGATCAGCAGCCGAGAAAGTT 60.677 52.381 0.00 0.0 0.0 2.66 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 6.987992 GTCCAGTTTGTATGAAATCCGGTATA 59.012 38.462 0.00 0.00 0.00 1.47
89 90 5.751990 GGTATATTTATATGAAGTCCGGCCG 59.248 44.000 21.04 21.04 0.00 6.13
104 105 1.349234 GGCCGTGTTTGCATGAATTC 58.651 50.000 0.00 0.00 33.58 2.17
105 106 1.336702 GGCCGTGTTTGCATGAATTCA 60.337 47.619 11.26 11.26 33.58 2.57
106 107 2.609350 GCCGTGTTTGCATGAATTCAT 58.391 42.857 15.36 15.36 36.96 2.57
107 108 2.599973 GCCGTGTTTGCATGAATTCATC 59.400 45.455 18.16 13.05 33.61 2.92
122 124 5.982516 TGAATTCATCCGGTTTGTTGAAAAG 59.017 36.000 3.38 0.00 32.35 2.27
129 131 3.369451 CCGGTTTGTTGAAAAGGTGTTTG 59.631 43.478 0.00 0.00 0.00 2.93
135 137 7.308288 GGTTTGTTGAAAAGGTGTTTGAAATGT 60.308 33.333 0.00 0.00 0.00 2.71
141 143 7.946207 TGAAAAGGTGTTTGAAATGTATGCTA 58.054 30.769 0.00 0.00 0.00 3.49
147 149 6.456449 GGTGTTTGAAATGTATGCTACTACGG 60.456 42.308 0.00 0.00 0.00 4.02
149 151 6.651643 TGTTTGAAATGTATGCTACTACGGTT 59.348 34.615 0.00 0.00 0.00 4.44
211 213 4.812476 TCCGCGGACGAATGCAGG 62.812 66.667 27.28 0.00 43.93 4.85
214 216 2.892425 GCGGACGAATGCAGGAGG 60.892 66.667 0.00 0.00 0.00 4.30
228 230 4.023291 TGCAGGAGGAAATTTATGGGTTC 58.977 43.478 0.00 0.00 0.00 3.62
229 231 4.264352 TGCAGGAGGAAATTTATGGGTTCT 60.264 41.667 0.00 0.00 0.00 3.01
230 232 4.339530 GCAGGAGGAAATTTATGGGTTCTC 59.660 45.833 0.00 0.00 0.00 2.87
384 403 1.864565 ATTTGACCAAACTTTGCGCC 58.135 45.000 4.18 0.00 32.51 6.53
476 509 1.827315 GCGTTAACTCAGTGCGCACA 61.827 55.000 39.21 21.09 46.23 4.57
516 552 3.003763 AGGAAGTCTGGTCGCCCC 61.004 66.667 0.00 0.00 0.00 5.80
594 640 6.261381 TCAAGTCGTGCAAAACTAATTAACCT 59.739 34.615 2.87 0.00 0.00 3.50
598 644 5.992829 TCGTGCAAAACTAATTAACCTCTCA 59.007 36.000 0.00 0.00 0.00 3.27
639 701 1.206578 CTTACCGGCGCAACAACAG 59.793 57.895 10.83 0.00 0.00 3.16
718 962 0.033228 CATGAAGCCTCGCCTCTAGG 59.967 60.000 0.00 0.00 37.17 3.02
738 982 2.363359 GGCGGCCTAGCTACTACTTTTA 59.637 50.000 12.87 0.00 37.29 1.52
877 1480 0.899720 TAGGATTCCGACGCCTTGTT 59.100 50.000 0.00 0.00 33.28 2.83
1127 1747 9.163899 TGTCGTGAGTACAATATCTATCTATCC 57.836 37.037 0.00 0.00 0.00 2.59
1176 1828 6.106648 AGTCATGTTCTTGATCACTTCTCA 57.893 37.500 0.00 0.00 0.00 3.27
1238 1919 5.120208 ACTTTCAAAGGTCGTGACGATAATG 59.880 40.000 12.08 8.67 38.42 1.90
1255 1936 3.411415 AATGAACTAGCTTTGCGCATC 57.589 42.857 12.75 3.18 42.61 3.91
1256 1937 1.807139 TGAACTAGCTTTGCGCATCA 58.193 45.000 12.75 6.42 42.61 3.07
1257 1938 1.464608 TGAACTAGCTTTGCGCATCAC 59.535 47.619 12.75 2.95 42.61 3.06
1273 1958 2.024176 TCACGAAATCTTAGGCTGGC 57.976 50.000 0.00 0.00 0.00 4.85
1292 1977 2.733026 GGCTGTGCATCATGAAAACAAC 59.267 45.455 0.00 0.24 0.00 3.32
1295 1980 4.318263 GCTGTGCATCATGAAAACAACAAC 60.318 41.667 0.00 0.00 0.00 3.32
1297 1982 4.041049 GTGCATCATGAAAACAACAACGA 58.959 39.130 0.00 0.00 0.00 3.85
1384 2094 2.762745 CACACAGCTTAAGGTACCGTT 58.237 47.619 5.42 3.80 0.00 4.44
1410 2123 6.177610 TGATTAGTTACCTGTTGACCAATCC 58.822 40.000 0.00 0.00 0.00 3.01
1911 2677 1.443702 CGACGACAATCCGCTGTCA 60.444 57.895 4.88 0.00 45.03 3.58
2043 2809 1.787057 CGGCGCTCTTCTCGGAGTAT 61.787 60.000 7.64 0.00 35.89 2.12
2073 2839 2.899838 GCTGGGCACACGTTCACA 60.900 61.111 0.00 0.00 0.00 3.58
2106 2872 3.214253 GGGTACTACCTGACGCCC 58.786 66.667 5.19 0.00 38.64 6.13
2538 3304 1.671054 CAACGTGTCCTTCCGCCAT 60.671 57.895 0.00 0.00 0.00 4.40
2736 3503 1.005394 CCGCTACAACACCTCGGTT 60.005 57.895 0.00 0.00 35.75 4.44
2949 3716 1.068417 CTTCGTCACCGACAACCCA 59.932 57.895 0.00 0.00 44.13 4.51
3082 3849 2.507484 CAGAATTCAAGAGGTGTGGCA 58.493 47.619 8.44 0.00 0.00 4.92
3122 3889 4.637977 GCCATAGAGCTAATTAATCTGGGC 59.362 45.833 18.67 18.67 37.54 5.36
3146 3913 2.713154 GTGCGTGCGGAAGTTGTT 59.287 55.556 0.00 0.00 0.00 2.83
3224 4012 9.811995 CATTCATTGTTCATTGTATTGAGGATT 57.188 29.630 0.00 0.00 0.00 3.01
3386 4178 3.242091 CGAACTGGCTGATATCACAAACG 60.242 47.826 0.00 2.56 0.00 3.60
3516 4308 9.408648 CCAAAAGGATAACTAAATATGACAGGT 57.591 33.333 0.00 0.00 0.00 4.00
3518 4310 8.451908 AAAGGATAACTAAATATGACAGGTGC 57.548 34.615 0.00 0.00 0.00 5.01
3593 4388 5.310720 ACATTTCGGCTTTGGTTAGATTC 57.689 39.130 0.00 0.00 0.00 2.52
3656 4451 0.249447 TCATAACGATGCAGAGGCCG 60.249 55.000 0.00 0.00 40.13 6.13
3863 4953 4.724798 TGGGTACTTTCCATTACATAGCCT 59.275 41.667 0.00 0.00 32.59 4.58
3912 5005 7.095774 CGTAAATGGGAAAAGTGATATACCTCG 60.096 40.741 0.00 0.00 0.00 4.63
3939 5032 8.494433 ACAAGTGGGATCACATTATGTTATACT 58.506 33.333 0.00 0.00 45.91 2.12
3941 5034 6.936900 AGTGGGATCACATTATGTTATACTGC 59.063 38.462 0.00 0.00 45.91 4.40
3942 5035 6.710295 GTGGGATCACATTATGTTATACTGCA 59.290 38.462 0.00 0.00 43.13 4.41
3948 5041 2.831685 TATGTTATACTGCAGCCGGG 57.168 50.000 15.27 0.00 0.00 5.73
3963 5056 1.375853 CCGGGCATTCTTTCGATGCA 61.376 55.000 9.91 0.00 42.65 3.96
3967 5060 3.243035 CGGGCATTCTTTCGATGCAATTA 60.243 43.478 9.91 0.00 42.65 1.40
4062 5156 7.694784 TGACTTTACTTTTTGTCGACATGTTTC 59.305 33.333 20.80 10.50 32.64 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.146984 TCATACAAACTGGACGAAAATACTTAG 57.853 33.333 0.00 0.00 0.00 2.18
70 71 3.181458 ACACGGCCGGACTTCATATAAAT 60.181 43.478 31.76 0.00 0.00 1.40
89 90 3.181397 CCGGATGAATTCATGCAAACAC 58.819 45.455 31.35 14.46 43.71 3.32
104 105 3.181480 ACACCTTTTCAACAAACCGGATG 60.181 43.478 9.46 9.74 0.00 3.51
105 106 3.028130 ACACCTTTTCAACAAACCGGAT 58.972 40.909 9.46 0.00 0.00 4.18
106 107 2.448453 ACACCTTTTCAACAAACCGGA 58.552 42.857 9.46 0.00 0.00 5.14
107 108 2.951457 ACACCTTTTCAACAAACCGG 57.049 45.000 0.00 0.00 0.00 5.28
122 124 6.456449 CCGTAGTAGCATACATTTCAAACACC 60.456 42.308 0.00 0.00 46.26 4.16
129 131 5.353938 TCCAACCGTAGTAGCATACATTTC 58.646 41.667 0.00 0.00 46.26 2.17
135 137 4.021456 CCATCATCCAACCGTAGTAGCATA 60.021 45.833 0.00 0.00 0.00 3.14
141 143 0.908910 TGCCATCATCCAACCGTAGT 59.091 50.000 0.00 0.00 0.00 2.73
202 204 4.261741 CCCATAAATTTCCTCCTGCATTCG 60.262 45.833 0.00 0.00 0.00 3.34
203 205 4.651045 ACCCATAAATTTCCTCCTGCATTC 59.349 41.667 0.00 0.00 0.00 2.67
204 206 4.623863 ACCCATAAATTTCCTCCTGCATT 58.376 39.130 0.00 0.00 0.00 3.56
211 213 5.163652 CCAACGAGAACCCATAAATTTCCTC 60.164 44.000 0.00 0.00 0.00 3.71
214 216 5.646360 TCTCCAACGAGAACCCATAAATTTC 59.354 40.000 0.00 0.00 42.33 2.17
228 230 1.482593 ACTTAGGGCATCTCCAACGAG 59.517 52.381 0.00 0.00 37.48 4.18
229 231 1.480954 GACTTAGGGCATCTCCAACGA 59.519 52.381 0.00 0.00 36.21 3.85
230 232 1.207089 TGACTTAGGGCATCTCCAACG 59.793 52.381 0.00 0.00 36.21 4.10
488 521 3.966026 GACTTCCTCGCCCGTCACG 62.966 68.421 0.00 0.00 0.00 4.35
489 522 2.126031 GACTTCCTCGCCCGTCAC 60.126 66.667 0.00 0.00 0.00 3.67
490 523 2.282958 AGACTTCCTCGCCCGTCA 60.283 61.111 0.00 0.00 0.00 4.35
491 524 2.182030 CAGACTTCCTCGCCCGTC 59.818 66.667 0.00 0.00 0.00 4.79
492 525 3.382832 CCAGACTTCCTCGCCCGT 61.383 66.667 0.00 0.00 0.00 5.28
494 530 2.579738 GACCAGACTTCCTCGCCC 59.420 66.667 0.00 0.00 0.00 6.13
594 640 2.038557 AGCTAACCTTTCGCCTTTGAGA 59.961 45.455 0.00 0.00 0.00 3.27
598 644 1.534729 CCAGCTAACCTTTCGCCTTT 58.465 50.000 0.00 0.00 0.00 3.11
639 701 4.439057 TCATTGGCACGTAGAATACCTTC 58.561 43.478 0.00 0.00 38.71 3.46
718 962 2.598686 AAAAGTAGTAGCTAGGCCGC 57.401 50.000 0.00 0.00 0.00 6.53
730 974 8.201554 TCTGCTACATTTCATGCTAAAAGTAG 57.798 34.615 13.72 13.72 40.79 2.57
738 982 4.212143 TCACTCTGCTACATTTCATGCT 57.788 40.909 0.00 0.00 0.00 3.79
877 1480 4.617530 GCGGCCTATTTATACACTCGATGA 60.618 45.833 0.00 0.00 0.00 2.92
1081 1701 1.963464 AAGGTGTGTTCCACGACCGT 61.963 55.000 0.00 0.00 45.52 4.83
1210 1862 4.268405 TCGTCACGACCTTTGAAAGTAAAC 59.732 41.667 0.00 0.00 0.00 2.01
1255 1936 1.667724 CAGCCAGCCTAAGATTTCGTG 59.332 52.381 0.00 0.00 0.00 4.35
1256 1937 1.279271 ACAGCCAGCCTAAGATTTCGT 59.721 47.619 0.00 0.00 0.00 3.85
1257 1938 1.667724 CACAGCCAGCCTAAGATTTCG 59.332 52.381 0.00 0.00 0.00 3.46
1273 1958 4.085466 CGTTGTTGTTTTCATGATGCACAG 60.085 41.667 0.00 0.00 0.00 3.66
1911 2677 0.739813 GCTTACCGTTGATGGTCGCT 60.740 55.000 0.00 0.00 42.62 4.93
2043 2809 0.321298 GCCCAGCGACCTTGAAGTAA 60.321 55.000 0.00 0.00 0.00 2.24
2106 2872 2.029380 TGTCACCATGTCCGTCTTGTAG 60.029 50.000 0.00 0.00 0.00 2.74
2174 2940 2.507854 ATATGGTAGTGCGCCGGCT 61.508 57.895 26.68 8.22 40.82 5.52
2278 3044 2.419739 GCCCGTTGTTGTTGTGGGT 61.420 57.895 0.00 0.00 42.10 4.51
2721 3488 3.056821 TGATCTCAACCGAGGTGTTGTAG 60.057 47.826 0.00 1.83 44.66 2.74
2736 3503 2.100418 CGTGCTCTGGAAGATGATCTCA 59.900 50.000 0.00 0.00 45.62 3.27
3082 3849 1.001641 GCTGAGTGAGGCCATTGGT 60.002 57.895 5.01 0.00 0.00 3.67
3415 4207 7.339466 AGGTTTGAGTTTGACACACTTATTTCT 59.661 33.333 0.00 0.00 0.00 2.52
3516 4308 3.318275 AGTCGACTTCTTCTACAACAGCA 59.682 43.478 13.58 0.00 0.00 4.41
3517 4309 3.903360 AGTCGACTTCTTCTACAACAGC 58.097 45.455 13.58 0.00 0.00 4.40
3518 4310 5.569823 GCTAAGTCGACTTCTTCTACAACAG 59.430 44.000 32.86 20.63 37.40 3.16
3666 4461 8.887036 TTTTATTCCTTTCTTGAAAAAGAGGC 57.113 30.769 0.00 0.00 38.30 4.70
3717 4794 7.951347 AAAAGTCAAATGCATCTAGATTCCT 57.049 32.000 1.33 0.00 0.00 3.36
3746 4827 4.716784 GCTCCAAATCCCCTCCTAATTTTT 59.283 41.667 0.00 0.00 0.00 1.94
3789 4879 1.677217 GGATCAGCAGCCGAGAAAGTT 60.677 52.381 0.00 0.00 0.00 2.66
3855 4945 3.006967 ACAGAGTTTGACGAAGGCTATGT 59.993 43.478 0.00 0.00 0.00 2.29
3863 4953 5.050634 CGAACCAATTACAGAGTTTGACGAA 60.051 40.000 0.00 0.00 0.00 3.85
3912 5005 7.807977 ATAACATAATGTGATCCCACTTGTC 57.192 36.000 0.00 0.00 43.55 3.18
3939 5032 2.283101 AAAGAATGCCCGGCTGCA 60.283 55.556 11.61 7.88 46.94 4.41
3941 5034 1.745115 TCGAAAGAATGCCCGGCTG 60.745 57.895 11.61 0.00 37.03 4.85
3942 5035 2.668632 TCGAAAGAATGCCCGGCT 59.331 55.556 11.61 0.00 37.03 5.52
4033 5127 8.495949 ACATGTCGACAAAAAGTAAAGTCATAG 58.504 33.333 24.13 0.00 0.00 2.23
4046 5140 7.918033 ACATACAAATGAAACATGTCGACAAAA 59.082 29.630 24.13 0.00 36.54 2.44
4062 5156 7.167302 CACACAACCAACACTAACATACAAATG 59.833 37.037 0.00 0.00 39.17 2.32



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.