AutoCloner

Multiple sequence alignment - TraesCS3B01G489400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G489400	chr3B	100.000	2633	0	0	1	2633	735132602	735129970	0.000000e+00	4863.0
1	TraesCS3B01G489400	chr3B	91.343	1571	109	8	775	2319	774057647	774059216	0.000000e+00	2122.0
2	TraesCS3B01G489400	chr3B	89.566	1361	111	14	984	2319	774125238	774126592	0.000000e+00	1698.0
3	TraesCS3B01G489400	chr3B	88.544	1353	128	21	986	2319	774153674	774155018	0.000000e+00	1615.0
4	TraesCS3B01G489400	chr3B	88.589	666	48	17	1	653	774056862	774057512	0.000000e+00	784.0
5	TraesCS3B01G489400	chr3B	94.495	327	13	4	2307	2633	774126617	774126938	1.410000e-137	499.0
6	TraesCS3B01G489400	chr3B	84.097	371	56	2	984	1351	774158952	774159322	3.220000e-94	355.0
7	TraesCS3B01G489400	chr3B	91.489	141	9	3	2307	2447	774155043	774155180	9.620000e-45	191.0
8	TraesCS3B01G489400	chr3B	89.362	141	12	3	2307	2447	774059241	774059378	9.690000e-40	174.0
9	TraesCS3B01G489400	chr3B	93.805	113	3	4	609	718	774057530	774057641	1.620000e-37	167.0
10	TraesCS3B01G489400	chr3B	97.059	68	2	0	2566	2633	774059399	774059466	5.960000e-22	115.0
11	TraesCS3B01G489400	chr3B	95.588	68	3	0	2566	2633	774155201	774155268	2.770000e-20	110.0
12	TraesCS3B01G489400	chr3A	89.987	1568	126	17	775	2319	714727765	714729324	0.000000e+00	1997.0
13	TraesCS3B01G489400	chr3A	87.983	1190	122	11	984	2156	714758212	714759397	0.000000e+00	1386.0
14	TraesCS3B01G489400	chr3A	80.990	1515	180	54	1213	2633	714738513	714740013	0.000000e+00	1103.0
15	TraesCS3B01G489400	chr3A	84.888	847	95	15	1466	2294	714768994	714769825	0.000000e+00	824.0
16	TraesCS3B01G489400	chr3A	92.988	328	20	3	2307	2633	714729349	714729674	2.370000e-130	475.0
17	TraesCS3B01G489400	chr3A	88.285	239	28	0	984	1222	714737812	714738050	1.190000e-73	287.0
18	TraesCS3B01G489400	chr3A	87.079	178	16	4	2154	2325	714759712	714759888	7.440000e-46	195.0
19	TraesCS3B01G489400	chr3D	85.484	1860	184	36	847	2633	579598838	579600684	0.000000e+00	1860.0
20	TraesCS3B01G489400	chr3D	89.505	1353	120	9	984	2319	579614424	579615771	0.000000e+00	1692.0
21	TraesCS3B01G489400	chr3D	86.094	827	86	10	1466	2275	579658836	579659650	0.000000e+00	863.0
22	TraesCS3B01G489400	chr3D	87.205	594	61	11	1	584	579597716	579598304	0.000000e+00	662.0
23	TraesCS3B01G489400	chr3D	92.908	141	7	3	2307	2447	579615796	579615933	4.440000e-48	202.0
24	TraesCS3B01G489400	chr3D	88.312	154	6	8	605	756	579598649	579598792	9.690000e-40	174.0
25	TraesCS3B01G489400	chr3D	97.059	68	2	0	2566	2633	579615954	579616021	5.960000e-22	115.0
26	TraesCS3B01G489400	chr5B	83.529	85	12	2	1367	1450	565153910	565153827	7.810000e-11	78.7
27	TraesCS3B01G489400	chr6B	86.154	65	9	0	1064	1128	42550202	42550266	1.310000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G489400	chr3B	735129970	735132602	2632	True	4863.000000	4863	100.000000	1	2633	1	chr3B.!!$R1	2632
1	TraesCS3B01G489400	chr3B	774125238	774126938	1700	False	1098.500000	1698	92.030500	984	2633	2	chr3B.!!$F2	1649
2	TraesCS3B01G489400	chr3B	774056862	774059466	2604	False	672.400000	2122	92.031600	1	2633	5	chr3B.!!$F1	2632
3	TraesCS3B01G489400	chr3B	774153674	774159322	5648	False	567.750000	1615	89.929500	984	2633	4	chr3B.!!$F3	1649
4	TraesCS3B01G489400	chr3A	714727765	714729674	1909	False	1236.000000	1997	91.487500	775	2633	2	chr3A.!!$F2	1858
5	TraesCS3B01G489400	chr3A	714768994	714769825	831	False	824.000000	824	84.888000	1466	2294	1	chr3A.!!$F1	828
6	TraesCS3B01G489400	chr3A	714758212	714759888	1676	False	790.500000	1386	87.531000	984	2325	2	chr3A.!!$F4	1341
7	TraesCS3B01G489400	chr3A	714737812	714740013	2201	False	695.000000	1103	84.637500	984	2633	2	chr3A.!!$F3	1649
8	TraesCS3B01G489400	chr3D	579597716	579600684	2968	False	898.666667	1860	87.000333	1	2633	3	chr3D.!!$F2	2632
9	TraesCS3B01G489400	chr3D	579658836	579659650	814	False	863.000000	863	86.094000	1466	2275	1	chr3D.!!$F1	809
10	TraesCS3B01G489400	chr3D	579614424	579616021	1597	False	669.666667	1692	93.157333	984	2633	3	chr3D.!!$F3	1649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
723	1065	0.106217	AACTGTGGGTTTGGTGGGAG	60.106	55.0	0.0	0.0	33.9	4.3	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2041	2892	0.601841	ACAACCACTAAACGAGGGCG	60.602	55.0	0.0	0.0	44.79	6.13	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
61	64	5.736951	TGAGAATAAATTGGTGTTTGGGG	57.263	39.130	0.00	0.00	0.00	4.96
147	150	7.382488	CACAGAACTTCGATTCTTTTGACTCTA	59.618	37.037	0.00	0.00	36.78	2.43
261	270	9.468532	ACATGCATTCTTCTTCTCTTTTTAAAC	57.531	29.630	0.00	0.00	0.00	2.01
369	381	8.855279	TGTTGCACGAACATATTTTATAAAAGC	58.145	29.630	15.45	10.36	39.78	3.51
394	406	6.566942	CGAGAGCTGTATGAATACACTCCTAC	60.567	46.154	18.84	13.68	39.48	3.18
409	421	1.544691	TCCTACGAAAGCACCACTCTC	59.455	52.381	0.00	0.00	0.00	3.20
417	429	0.603569	AGCACCACTCTCGTGTAAGG	59.396	55.000	0.00	0.00	39.55	2.69
423	435	1.792949	CACTCTCGTGTAAGGTGCAAC	59.207	52.381	0.00	0.00	36.39	4.17
480	492	5.299949	AGGCATGAAAACCAAGAACAAATC	58.700	37.500	0.00	0.00	0.00	2.17
539	551	2.687003	AAGGAATTTCGAAACCCCCA	57.313	45.000	21.05	0.00	0.00	4.96
567	579	5.850557	TGAAGAGCCATGAAAAAGAAACA	57.149	34.783	0.00	0.00	0.00	2.83
693	1035	4.659172	TGTTCTTGCTGGGCCGGG	62.659	66.667	15.62	2.88	0.00	5.73
721	1063	1.112916	GGAACTGTGGGTTTGGTGGG	61.113	60.000	0.00	0.00	38.41	4.61
722	1064	0.106419	GAACTGTGGGTTTGGTGGGA	60.106	55.000	0.00	0.00	38.41	4.37
723	1065	0.106217	AACTGTGGGTTTGGTGGGAG	60.106	55.000	0.00	0.00	33.90	4.30
724	1066	1.286305	ACTGTGGGTTTGGTGGGAGT	61.286	55.000	0.00	0.00	0.00	3.85
725	1067	0.537371	CTGTGGGTTTGGTGGGAGTC	60.537	60.000	0.00	0.00	0.00	3.36
726	1068	1.282653	TGTGGGTTTGGTGGGAGTCA	61.283	55.000	0.00	0.00	0.00	3.41
727	1069	0.822121	GTGGGTTTGGTGGGAGTCAC	60.822	60.000	0.00	0.00	45.34	3.67
730	1072	0.537371	GGTTTGGTGGGAGTCACTGG	60.537	60.000	0.00	0.00	45.38	4.00
744	1086	2.038033	GTCACTGGTACTTTGGGCTGTA	59.962	50.000	0.00	0.00	0.00	2.74
745	1087	2.301870	TCACTGGTACTTTGGGCTGTAG	59.698	50.000	0.00	0.00	0.00	2.74
746	1088	1.003233	ACTGGTACTTTGGGCTGTAGC	59.997	52.381	0.00	0.00	37.58	3.58
747	1089	1.279271	CTGGTACTTTGGGCTGTAGCT	59.721	52.381	3.63	0.00	41.70	3.32
748	1090	1.278127	TGGTACTTTGGGCTGTAGCTC	59.722	52.381	3.63	0.00	43.24	4.09
749	1091	1.555533	GGTACTTTGGGCTGTAGCTCT	59.444	52.381	5.22	0.00	43.37	4.09
750	1092	2.027100	GGTACTTTGGGCTGTAGCTCTT	60.027	50.000	5.22	0.00	43.37	2.85
751	1093	2.959465	ACTTTGGGCTGTAGCTCTTT	57.041	45.000	5.22	0.00	43.37	2.52
752	1094	3.229697	ACTTTGGGCTGTAGCTCTTTT	57.770	42.857	5.22	0.00	43.37	2.27
753	1095	3.566351	ACTTTGGGCTGTAGCTCTTTTT	58.434	40.909	5.22	0.00	43.37	1.94
754	1096	3.570125	ACTTTGGGCTGTAGCTCTTTTTC	59.430	43.478	5.22	0.00	43.37	2.29
755	1097	3.508845	TTGGGCTGTAGCTCTTTTTCT	57.491	42.857	5.22	0.00	43.37	2.52
756	1098	4.634012	TTGGGCTGTAGCTCTTTTTCTA	57.366	40.909	5.22	0.00	43.37	2.10
757	1099	4.844349	TGGGCTGTAGCTCTTTTTCTAT	57.156	40.909	5.22	0.00	43.37	1.98
758	1100	5.950544	TGGGCTGTAGCTCTTTTTCTATA	57.049	39.130	5.22	0.00	43.37	1.31
759	1101	6.500589	TGGGCTGTAGCTCTTTTTCTATAT	57.499	37.500	5.22	0.00	43.37	0.86
760	1102	6.900194	TGGGCTGTAGCTCTTTTTCTATATT	58.100	36.000	5.22	0.00	43.37	1.28
761	1103	7.346471	TGGGCTGTAGCTCTTTTTCTATATTT	58.654	34.615	5.22	0.00	43.37	1.40
762	1104	8.491134	TGGGCTGTAGCTCTTTTTCTATATTTA	58.509	33.333	5.22	0.00	43.37	1.40
763	1105	8.775527	GGGCTGTAGCTCTTTTTCTATATTTAC	58.224	37.037	3.63	0.00	38.82	2.01
764	1106	9.549078	GGCTGTAGCTCTTTTTCTATATTTACT	57.451	33.333	3.63	0.00	41.70	2.24
829	1173	7.201565	CCTCTGTTTCATCTCCTTATTTCGTTC	60.202	40.741	0.00	0.00	0.00	3.95
887	1234	2.224402	CCCTAAACCCTAGCAGATCAGC	60.224	54.545	1.07	1.07	0.00	4.26
889	1236	3.118261	CCTAAACCCTAGCAGATCAGCAA	60.118	47.826	13.03	0.00	36.85	3.91
964	1311	2.437359	CAAGCAAGGCGGAGGAGG	60.437	66.667	0.00	0.00	0.00	4.30
968	1315	2.666098	GCAAGGCGGAGGAGGGTTA	61.666	63.158	0.00	0.00	0.00	2.85
1045	1392	2.356793	GATCTGCCTCCGCCATCG	60.357	66.667	0.00	0.00	0.00	3.84
1152	1499	2.676471	CGCCCTTTCACCCTTGGG	60.676	66.667	3.77	3.77	42.41	4.12
1170	1517	0.466189	GGGGACATCGATGGCACATT	60.466	55.000	33.60	9.83	42.49	2.71
1209	1556	2.288825	CCAGAAACCAGAGTACGCAGAA	60.289	50.000	0.00	0.00	0.00	3.02
1218	2037	5.770663	ACCAGAGTACGCAGAATACATATCT	59.229	40.000	0.00	0.00	0.00	1.98
1245	2064	4.922206	TCCTTAATCTTGATGCCAGTGTT	58.078	39.130	0.00	0.00	0.00	3.32
1246	2065	4.701651	TCCTTAATCTTGATGCCAGTGTTG	59.298	41.667	0.00	0.00	0.00	3.33
1269	2088	3.959975	GCGGTGAAGGCGCAACAA	61.960	61.111	10.83	0.00	0.00	2.83
1315	2134	0.320771	GAACCAAGCTCCTTCGCTGA	60.321	55.000	0.00	0.00	40.79	4.26
1446	2271	5.467035	TCAGGTGCGATATCATTGTCATA	57.533	39.130	3.12	0.00	0.00	2.15
1660	2500	2.377810	TGGCATGAAGGAGGGCGAT	61.378	57.895	0.00	0.00	32.51	4.58
1661	2501	1.895707	GGCATGAAGGAGGGCGATG	60.896	63.158	0.00	0.00	0.00	3.84
2041	2892	6.645790	ATTAAGAATCTGATTGCCATGTCC	57.354	37.500	7.78	0.00	0.00	4.02
2059	2910	1.296056	CCGCCCTCGTTTAGTGGTTG	61.296	60.000	0.00	0.00	0.00	3.77
2074	2925	5.248870	AGTGGTTGTTGTTTCTTTAGCAG	57.751	39.130	0.00	0.00	0.00	4.24
2344	3580	9.853555	CTATCTTAGTACTGGAAAGCATCTATG	57.146	37.037	5.39	0.00	0.00	2.23
2345	3581	7.055667	TCTTAGTACTGGAAAGCATCTATGG	57.944	40.000	5.39	0.00	0.00	2.74
2389	3628	3.703556	CTCTGATCAGGAGTTGCCTCTAA	59.296	47.826	22.42	0.00	46.97	2.10
2413	3652	2.752354	CGAGGGATTATTTGCCACACAA	59.248	45.455	0.00	0.00	38.58	3.33
2430	3691	7.120579	TGCCACACAACTATTCTAAAGTTATGG	59.879	37.037	0.06	4.65	36.02	2.74
2563	3858	4.691506	TGCACGCAGAACTATGCA	57.308	50.000	0.00	0.00	46.87	3.96
2590	3885	3.981071	TGCCTCTGTTATGTTAGTGCT	57.019	42.857	0.00	0.00	0.00	4.40
2604	3899	5.000591	TGTTAGTGCTTTGCTATGTGCTTA	58.999	37.500	0.00	0.00	43.37	3.09

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	41	5.784906	ACCCCAAACACCAATTTATTCTCAT	59.215	36.000	0.00	0.00	0.00	2.90
44	47	6.749036	TTAACACCCCAAACACCAATTTAT	57.251	33.333	0.00	0.00	0.00	1.40
58	61	8.573885	GCCTATAGAAAAATACATTAACACCCC	58.426	37.037	0.00	0.00	0.00	4.95
218	224	4.155826	TGCATGTACTTGTGAATAAGGTGC	59.844	41.667	10.17	0.00	31.94	5.01
369	381	4.277174	AGGAGTGTATTCATACAGCTCTCG	59.723	45.833	18.67	0.00	43.32	4.04
384	396	2.029649	GTGGTGCTTTCGTAGGAGTGTA	60.030	50.000	0.00	0.00	0.00	2.90
409	421	1.191647	GAGAACGTTGCACCTTACACG	59.808	52.381	5.00	4.88	0.00	4.49
417	429	2.159272	GAGCGGTGAGAACGTTGCAC	62.159	60.000	17.94	17.94	0.00	4.57
423	435	1.226156	CTCTCGAGCGGTGAGAACG	60.226	63.158	7.81	2.89	41.66	3.95
450	462	4.344679	TCTTGGTTTTCATGCCTTTGTCAT	59.655	37.500	0.00	0.00	0.00	3.06
511	523	6.200286	GGGTTTCGAAATTCCTTTTTGTCTTC	59.800	38.462	14.69	0.00	31.56	2.87
514	526	4.748102	GGGGTTTCGAAATTCCTTTTTGTC	59.252	41.667	23.37	5.91	31.56	3.18
522	534	3.755112	TTTTGGGGGTTTCGAAATTCC	57.245	42.857	14.69	17.36	0.00	3.01
549	561	6.048509	TCCTTTTGTTTCTTTTTCATGGCTC	58.951	36.000	0.00	0.00	0.00	4.70
551	563	6.676237	TTCCTTTTGTTTCTTTTTCATGGC	57.324	33.333	0.00	0.00	0.00	4.40
553	565	9.545611	CACTTTTCCTTTTGTTTCTTTTTCATG	57.454	29.630	0.00	0.00	0.00	3.07
651	993	7.440523	AAAGCTCGAACTTATCAGATTTGTT	57.559	32.000	0.67	0.00	29.68	2.83
652	994	7.041098	ACAAAAGCTCGAACTTATCAGATTTGT	60.041	33.333	0.67	4.38	30.59	2.83
653	995	7.301054	ACAAAAGCTCGAACTTATCAGATTTG	58.699	34.615	0.67	3.78	30.59	2.32
654	996	7.440523	ACAAAAGCTCGAACTTATCAGATTT	57.559	32.000	0.67	0.00	31.04	2.17
659	1001	6.658831	CAAGAACAAAAGCTCGAACTTATCA	58.341	36.000	0.67	0.00	0.00	2.15
693	1035	5.048294	CCAAACCCACAGTTCCTATTTGTAC	60.048	44.000	0.00	0.00	37.88	2.90
721	1063	1.348036	AGCCCAAAGTACCAGTGACTC	59.652	52.381	0.00	0.00	0.00	3.36
722	1064	1.072331	CAGCCCAAAGTACCAGTGACT	59.928	52.381	0.00	0.00	0.00	3.41
723	1065	1.202770	ACAGCCCAAAGTACCAGTGAC	60.203	52.381	0.00	0.00	0.00	3.67
724	1066	1.136828	ACAGCCCAAAGTACCAGTGA	58.863	50.000	0.00	0.00	0.00	3.41
725	1067	2.699954	CTACAGCCCAAAGTACCAGTG	58.300	52.381	0.00	0.00	0.00	3.66
726	1068	1.003233	GCTACAGCCCAAAGTACCAGT	59.997	52.381	0.00	0.00	34.31	4.00
727	1069	1.279271	AGCTACAGCCCAAAGTACCAG	59.721	52.381	0.00	0.00	43.38	4.00
730	1072	3.336138	AAGAGCTACAGCCCAAAGTAC	57.664	47.619	0.00	0.00	43.38	2.73
771	1113	9.490379	TTTCGAGAGTATAGAAAAAGAGCTTTT	57.510	29.630	2.51	2.51	43.88	2.27
772	1114	9.490379	TTTTCGAGAGTATAGAAAAAGAGCTTT	57.510	29.630	3.66	0.00	38.89	3.51
773	1115	9.490379	TTTTTCGAGAGTATAGAAAAAGAGCTT	57.510	29.630	12.61	0.00	43.33	3.74
786	1128	6.287589	ACAGAGGTGATTTTTCGAGAGTAT	57.712	37.500	0.00	0.00	0.00	2.12
829	1173	1.617839	AGGAGGAGCAAGAAGGGGG	60.618	63.158	0.00	0.00	0.00	5.40
887	1234	0.592637	TGATTGCTGCGGAAGTGTTG	59.407	50.000	0.00	0.00	0.00	3.33
889	1236	1.237285	GGTGATTGCTGCGGAAGTGT	61.237	55.000	0.00	0.00	0.00	3.55
964	1311	3.377172	CGGGAAATGTGGAGTTGATAACC	59.623	47.826	0.00	0.00	0.00	2.85
968	1315	1.633432	TCCGGGAAATGTGGAGTTGAT	59.367	47.619	0.00	0.00	0.00	2.57
977	1324	2.249309	AGACCTACTCCGGGAAATGT	57.751	50.000	0.00	0.00	0.00	2.71
1045	1392	3.050275	GCTCACCGTGGAGGCAAC	61.050	66.667	0.00	0.00	46.52	4.17
1081	1428	2.027751	GCGGGAGTAGCCATCGAC	59.972	66.667	0.00	0.00	38.95	4.20
1152	1499	0.664761	CAATGTGCCATCGATGTCCC	59.335	55.000	23.27	11.92	0.00	4.46
1170	1517	1.117150	GGCCGTTGGGATAGTACTCA	58.883	55.000	0.00	0.00	34.06	3.41
1173	1520	1.117150	TCTGGCCGTTGGGATAGTAC	58.883	55.000	0.00	0.00	34.06	2.73
1218	2037	4.661222	TGGCATCAAGATTAAGGAACACA	58.339	39.130	0.00	0.00	0.00	3.72
1269	2088	4.280677	TCCTCATCCGCAAAACTGAATTTT	59.719	37.500	0.00	0.00	41.38	1.82
1315	2134	8.314751	AGAACTGTAGCTGTTTACTGTTGATAT	58.685	33.333	12.62	0.00	42.22	1.63
1357	2182	1.590238	CCTCTTGATGAATGTCGCGAC	59.410	52.381	31.66	31.66	0.00	5.19
1438	2263	2.795175	CGGTAGTCGCCTATGACAAT	57.205	50.000	0.00	0.00	41.41	2.71
1472	2297	0.038310	TGCTGGAGGAGTCTCTTCGA	59.962	55.000	5.93	1.49	39.86	3.71
1677	2521	2.842496	TCTGCCTCCATTTCATCTCTGT	59.158	45.455	0.00	0.00	0.00	3.41
1680	2524	2.172293	ACCTCTGCCTCCATTTCATCTC	59.828	50.000	0.00	0.00	0.00	2.75
2011	2862	8.442632	TGGCAATCAGATTCTTAATAACTGAG	57.557	34.615	0.00	0.00	40.17	3.35
2041	2892	0.601841	ACAACCACTAAACGAGGGCG	60.602	55.000	0.00	0.00	44.79	6.13
2074	2925	7.611855	CCATTTCAATCCCTGGGACTATATAAC	59.388	40.741	19.82	0.00	32.98	1.89
2344	3580	3.084039	TGCACTGATCCATGTTCTTTCC	58.916	45.455	0.00	0.00	0.00	3.13
2345	3581	4.639310	AGATGCACTGATCCATGTTCTTTC	59.361	41.667	0.00	0.00	0.00	2.62
2389	3628	2.290641	TGTGGCAAATAATCCCTCGTGT	60.291	45.455	0.00	0.00	0.00	4.49
2413	3652	8.823220	AAACATGGCCATAACTTTAGAATAGT	57.177	30.769	20.30	4.13	0.00	2.12
2563	3858	7.201732	GCACTAACATAACAGAGGCAAACATAT	60.202	37.037	0.00	0.00	0.00	1.78

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.