Multiple sequence alignment - TraesCS3B01G488900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G488900 chr3B 100.000 2348 0 0 1 2348 734687682 734685335 0.000000e+00 4337
1 TraesCS3B01G488900 chr3B 90.137 365 30 5 1989 2348 643046743 643047106 9.820000e-129 470
2 TraesCS3B01G488900 chr3B 88.366 361 38 2 1990 2346 566602993 566602633 4.640000e-117 431
3 TraesCS3B01G488900 chr3D 89.810 1688 87 43 1 1643 553680744 553679097 0.000000e+00 2085
4 TraesCS3B01G488900 chr3D 92.011 363 24 4 1990 2348 389168329 389168690 2.690000e-139 505
5 TraesCS3B01G488900 chr3D 92.549 255 15 1 1735 1985 553679059 553678805 1.720000e-96 363
6 TraesCS3B01G488900 chr3A 89.451 948 46 22 720 1643 690080398 690079481 0.000000e+00 1147
7 TraesCS3B01G488900 chr3A 90.354 622 35 10 54 666 690081248 690080643 0.000000e+00 793
8 TraesCS3B01G488900 chr3A 96.016 251 10 0 1735 1985 690079447 690079197 2.170000e-110 409
9 TraesCS3B01G488900 chr5A 91.209 364 27 3 1990 2348 510493924 510494287 7.540000e-135 490
10 TraesCS3B01G488900 chr7A 90.137 365 30 5 1988 2347 680534794 680535157 9.820000e-129 470
11 TraesCS3B01G488900 chr5D 89.005 382 35 5 1972 2348 137980578 137980199 1.270000e-127 466
12 TraesCS3B01G488900 chr5B 89.011 364 35 3 1990 2348 36808679 36809042 1.660000e-121 446
13 TraesCS3B01G488900 chrUn 88.736 364 36 3 1990 2348 369978807 369978444 7.700000e-120 440
14 TraesCS3B01G488900 chrUn 88.493 365 36 4 1990 2348 314542830 314543194 9.960000e-119 436
15 TraesCS3B01G488900 chr1D 88.435 147 17 0 1200 1346 443168002 443167856 6.670000e-41 178
16 TraesCS3B01G488900 chr1B 87.075 147 19 0 1200 1346 601267950 601268096 1.440000e-37 167
17 TraesCS3B01G488900 chr1A 86.395 147 20 0 1200 1346 535858056 535858202 6.720000e-36 161
18 TraesCS3B01G488900 chr2D 82.836 134 17 6 1201 1332 63703429 63703300 5.300000e-22 115
19 TraesCS3B01G488900 chr2B 82.836 134 17 6 1201 1332 99773237 99773108 5.300000e-22 115
20 TraesCS3B01G488900 chr2A 82.090 134 18 6 1201 1332 65395920 65395791 2.470000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G488900 chr3B 734685335 734687682 2347 True 4337 4337 100.000000 1 2348 1 chr3B.!!$R2 2347
1 TraesCS3B01G488900 chr3D 553678805 553680744 1939 True 1224 2085 91.179500 1 1985 2 chr3D.!!$R1 1984
2 TraesCS3B01G488900 chr3A 690079197 690081248 2051 True 783 1147 91.940333 54 1985 3 chr3A.!!$R1 1931

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 622 0.375803 CGCCCTAATTAACACCGCAC 59.624 55.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 2452 0.034186 TGCGCCAATTCTGGAGGATT 60.034 50.0 4.18 0.0 46.92 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.295575 GCTGTATACATCTAGAAGCCCAGATT 60.296 42.308 5.91 0.00 28.88 2.40
118 120 0.597637 GTGTATGTCGCCCAGATCGG 60.598 60.000 0.00 0.00 0.00 4.18
127 129 2.632996 TCGCCCAGATCGGATTTCTTAT 59.367 45.455 5.32 0.00 36.56 1.73
232 234 3.733960 GCCCGCGGACAAAACCTC 61.734 66.667 30.73 0.00 0.00 3.85
276 279 5.404066 GCCATGTTACCATGTTGTTGTTAAC 59.596 40.000 0.00 0.00 45.83 2.01
435 453 3.589288 AGTGAGGATAGGGTTCTTGCTTT 59.411 43.478 0.00 0.00 0.00 3.51
474 495 5.241662 GCAAGAAAAGTCAGTGTCCTAGAT 58.758 41.667 0.00 0.00 0.00 1.98
475 496 5.350091 GCAAGAAAAGTCAGTGTCCTAGATC 59.650 44.000 0.00 0.00 0.00 2.75
476 497 5.317733 AGAAAAGTCAGTGTCCTAGATCG 57.682 43.478 0.00 0.00 0.00 3.69
477 498 5.010933 AGAAAAGTCAGTGTCCTAGATCGA 58.989 41.667 0.00 0.00 0.00 3.59
478 499 4.974368 AAAGTCAGTGTCCTAGATCGAG 57.026 45.455 0.00 0.00 0.00 4.04
479 500 2.294074 AGTCAGTGTCCTAGATCGAGC 58.706 52.381 0.00 0.00 0.00 5.03
480 501 1.003331 GTCAGTGTCCTAGATCGAGCG 60.003 57.143 0.00 0.00 0.00 5.03
481 502 1.134491 TCAGTGTCCTAGATCGAGCGA 60.134 52.381 0.00 0.00 0.00 4.93
482 503 1.262950 CAGTGTCCTAGATCGAGCGAG 59.737 57.143 3.59 3.59 0.00 5.03
483 504 0.589223 GTGTCCTAGATCGAGCGAGG 59.411 60.000 22.18 22.18 32.58 4.63
484 505 1.167155 TGTCCTAGATCGAGCGAGGC 61.167 60.000 23.19 18.06 31.52 4.70
510 531 6.238347 GCATGTGGATCGTGTATTAACAATCA 60.238 38.462 0.00 0.00 37.36 2.57
528 549 5.295787 ACAATCACAACGAAGTACACACATT 59.704 36.000 0.00 0.00 45.00 2.71
529 550 6.183360 ACAATCACAACGAAGTACACACATTT 60.183 34.615 0.00 0.00 45.00 2.32
530 551 5.804692 TCACAACGAAGTACACACATTTT 57.195 34.783 0.00 0.00 45.00 1.82
531 552 5.564768 TCACAACGAAGTACACACATTTTG 58.435 37.500 0.00 0.00 45.00 2.44
571 592 5.708948 TCTTAAATTTGGCATGTTCTTCCG 58.291 37.500 0.00 0.00 0.00 4.30
601 622 0.375803 CGCCCTAATTAACACCGCAC 59.624 55.000 0.00 0.00 0.00 5.34
624 645 4.912395 TGGCCAGCCGTTTGCCTT 62.912 61.111 0.00 0.00 45.56 4.35
626 647 3.294493 GCCAGCCGTTTGCCTTGA 61.294 61.111 0.00 0.00 42.71 3.02
635 656 2.432444 CGTTTGCCTTGATTACCAGGA 58.568 47.619 0.00 0.00 0.00 3.86
637 659 2.755103 GTTTGCCTTGATTACCAGGAGG 59.245 50.000 0.00 0.00 42.21 4.30
662 684 1.203523 AGACATCAGTCCTCTTCGTGC 59.796 52.381 0.00 0.00 46.15 5.34
666 688 0.539669 TCAGTCCTCTTCGTGCCAGA 60.540 55.000 0.00 0.00 0.00 3.86
674 852 1.623311 TCTTCGTGCCAGAAATGAGGA 59.377 47.619 0.00 0.00 0.00 3.71
678 856 3.420893 TCGTGCCAGAAATGAGGATTTT 58.579 40.909 0.00 0.00 31.58 1.82
747 960 1.407618 AGTCAGTCATTGCCGCGTATA 59.592 47.619 4.92 0.00 0.00 1.47
748 961 2.035961 AGTCAGTCATTGCCGCGTATAT 59.964 45.455 4.92 0.00 0.00 0.86
835 1048 3.187700 GGGATCTTAACTACACTGCACG 58.812 50.000 0.00 0.00 0.00 5.34
836 1049 3.368116 GGGATCTTAACTACACTGCACGT 60.368 47.826 0.00 0.00 0.00 4.49
837 1050 3.858238 GGATCTTAACTACACTGCACGTC 59.142 47.826 0.00 0.00 0.00 4.34
838 1051 4.380655 GGATCTTAACTACACTGCACGTCT 60.381 45.833 0.00 0.00 0.00 4.18
839 1052 3.897325 TCTTAACTACACTGCACGTCTG 58.103 45.455 0.00 0.00 0.00 3.51
840 1053 2.060326 TAACTACACTGCACGTCTGC 57.940 50.000 0.00 0.00 44.52 4.26
1042 1273 2.013807 GCGCTCATTGTCGCCATTA 58.986 52.632 0.00 0.00 45.01 1.90
1116 1347 2.070650 GGCAGGGGAGGATTACGGT 61.071 63.158 0.00 0.00 0.00 4.83
1350 1587 2.416678 CGCTGCAGAGGCTAGAGG 59.583 66.667 20.43 0.00 41.91 3.69
1351 1588 2.108771 GCTGCAGAGGCTAGAGGC 59.891 66.667 20.43 0.00 41.91 4.70
1359 1596 1.595993 GAGGCTAGAGGCACACACGA 61.596 60.000 5.83 0.00 44.01 4.35
1381 1618 2.736347 GTACAGCTTCCTCCTACCTCA 58.264 52.381 0.00 0.00 0.00 3.86
1391 1628 3.437795 CTACCTCACCGTCGCCGT 61.438 66.667 0.00 0.00 0.00 5.68
1392 1629 2.985282 TACCTCACCGTCGCCGTT 60.985 61.111 0.00 0.00 0.00 4.44
1393 1630 2.482296 CTACCTCACCGTCGCCGTTT 62.482 60.000 0.00 0.00 0.00 3.60
1395 1632 2.660552 CTCACCGTCGCCGTTTGT 60.661 61.111 0.00 0.00 0.00 2.83
1398 1635 4.573950 ACCGTCGCCGTTTGTCGT 62.574 61.111 0.00 0.00 37.94 4.34
1399 1636 3.759828 CCGTCGCCGTTTGTCGTC 61.760 66.667 0.00 0.00 37.94 4.20
1405 1642 2.704193 GCCGTTTGTCGTCGTCGAG 61.704 63.158 4.68 0.00 46.96 4.04
1451 1692 8.902540 ATCTTGTAAGTTGTAAGACATGTTCA 57.097 30.769 0.00 0.00 33.69 3.18
1554 1796 2.684374 CCGTTGAGCAAATCATCCATGA 59.316 45.455 0.00 0.00 37.89 3.07
1558 1800 5.277202 CGTTGAGCAAATCATCCATGACTAG 60.277 44.000 0.00 0.00 40.03 2.57
1638 1882 4.619760 CGTTTGAACTCTACTGTGCGATTA 59.380 41.667 0.00 0.00 0.00 1.75
1643 1887 7.096884 TGAACTCTACTGTGCGATTAGTAAT 57.903 36.000 0.00 0.00 0.00 1.89
1644 1888 6.972901 TGAACTCTACTGTGCGATTAGTAATG 59.027 38.462 0.00 0.00 0.00 1.90
1645 1889 5.282510 ACTCTACTGTGCGATTAGTAATGC 58.717 41.667 0.00 5.40 0.00 3.56
1646 1890 5.067936 ACTCTACTGTGCGATTAGTAATGCT 59.932 40.000 0.00 0.00 0.00 3.79
1647 1891 5.520632 TCTACTGTGCGATTAGTAATGCTC 58.479 41.667 0.00 6.33 0.00 4.26
1648 1892 3.116300 ACTGTGCGATTAGTAATGCTCG 58.884 45.455 0.00 0.00 0.00 5.03
1649 1893 3.181490 ACTGTGCGATTAGTAATGCTCGA 60.181 43.478 8.25 0.00 33.07 4.04
1650 1894 3.977427 TGTGCGATTAGTAATGCTCGAT 58.023 40.909 8.25 0.00 33.07 3.59
1651 1895 4.368315 TGTGCGATTAGTAATGCTCGATT 58.632 39.130 8.25 0.00 33.07 3.34
1652 1896 4.209080 TGTGCGATTAGTAATGCTCGATTG 59.791 41.667 8.25 0.00 33.07 2.67
1653 1897 3.184379 TGCGATTAGTAATGCTCGATTGC 59.816 43.478 8.25 0.00 33.93 3.56
1654 1898 3.430218 GCGATTAGTAATGCTCGATTGCT 59.570 43.478 8.25 0.00 39.95 3.91
1655 1899 4.433544 GCGATTAGTAATGCTCGATTGCTC 60.434 45.833 8.25 0.00 38.00 4.26
1656 1900 4.681483 CGATTAGTAATGCTCGATTGCTCA 59.319 41.667 0.00 0.00 38.00 4.26
1657 1901 5.347093 CGATTAGTAATGCTCGATTGCTCAT 59.653 40.000 0.00 0.00 38.00 2.90
1658 1902 6.528072 CGATTAGTAATGCTCGATTGCTCATA 59.472 38.462 0.00 0.00 38.00 2.15
1659 1903 7.462069 CGATTAGTAATGCTCGATTGCTCATAC 60.462 40.741 0.00 0.19 38.00 2.39
1660 1904 3.983988 AGTAATGCTCGATTGCTCATACG 59.016 43.478 0.00 0.00 31.85 3.06
1661 1905 2.515926 ATGCTCGATTGCTCATACGT 57.484 45.000 0.00 0.00 0.00 3.57
1662 1906 1.559831 TGCTCGATTGCTCATACGTG 58.440 50.000 0.00 0.00 0.00 4.49
1663 1907 1.135112 TGCTCGATTGCTCATACGTGT 60.135 47.619 0.00 0.00 0.00 4.49
1664 1908 2.098443 TGCTCGATTGCTCATACGTGTA 59.902 45.455 0.00 0.00 0.00 2.90
1665 1909 3.243401 TGCTCGATTGCTCATACGTGTAT 60.243 43.478 0.00 0.00 0.00 2.29
1666 1910 4.023536 TGCTCGATTGCTCATACGTGTATA 60.024 41.667 0.00 0.00 0.00 1.47
1667 1911 4.915667 GCTCGATTGCTCATACGTGTATAA 59.084 41.667 0.00 0.00 0.00 0.98
1668 1912 5.164177 GCTCGATTGCTCATACGTGTATAAC 60.164 44.000 0.00 0.00 0.00 1.89
1669 1913 6.068473 TCGATTGCTCATACGTGTATAACT 57.932 37.500 0.00 0.00 0.00 2.24
1670 1914 6.140786 TCGATTGCTCATACGTGTATAACTC 58.859 40.000 0.00 0.00 0.00 3.01
1671 1915 5.342525 CGATTGCTCATACGTGTATAACTCC 59.657 44.000 0.00 0.00 0.00 3.85
1672 1916 4.579454 TGCTCATACGTGTATAACTCCC 57.421 45.455 0.00 0.00 0.00 4.30
1673 1917 3.004002 TGCTCATACGTGTATAACTCCCG 59.996 47.826 0.00 0.00 0.00 5.14
1674 1918 3.562505 CTCATACGTGTATAACTCCCGC 58.437 50.000 0.00 0.00 0.00 6.13
1675 1919 2.294233 TCATACGTGTATAACTCCCGCC 59.706 50.000 0.00 0.00 0.00 6.13
1676 1920 1.032014 TACGTGTATAACTCCCGCCC 58.968 55.000 0.00 0.00 0.00 6.13
1677 1921 1.068585 CGTGTATAACTCCCGCCCC 59.931 63.158 0.00 0.00 0.00 5.80
1678 1922 1.068585 GTGTATAACTCCCGCCCCG 59.931 63.158 0.00 0.00 0.00 5.73
1679 1923 1.076118 TGTATAACTCCCGCCCCGA 60.076 57.895 0.00 0.00 0.00 5.14
1680 1924 0.470456 TGTATAACTCCCGCCCCGAT 60.470 55.000 0.00 0.00 0.00 4.18
1681 1925 0.683412 GTATAACTCCCGCCCCGATT 59.317 55.000 0.00 0.00 0.00 3.34
1682 1926 0.682852 TATAACTCCCGCCCCGATTG 59.317 55.000 0.00 0.00 0.00 2.67
1683 1927 1.052124 ATAACTCCCGCCCCGATTGA 61.052 55.000 0.00 0.00 0.00 2.57
1684 1928 1.052124 TAACTCCCGCCCCGATTGAT 61.052 55.000 0.00 0.00 0.00 2.57
1685 1929 1.921869 AACTCCCGCCCCGATTGATT 61.922 55.000 0.00 0.00 0.00 2.57
1686 1930 1.893808 CTCCCGCCCCGATTGATTG 60.894 63.158 0.00 0.00 0.00 2.67
1687 1931 2.124320 CCCGCCCCGATTGATTGT 60.124 61.111 0.00 0.00 0.00 2.71
1688 1932 1.752694 CCCGCCCCGATTGATTGTT 60.753 57.895 0.00 0.00 0.00 2.83
1689 1933 1.724582 CCCGCCCCGATTGATTGTTC 61.725 60.000 0.00 0.00 0.00 3.18
1690 1934 0.748005 CCGCCCCGATTGATTGTTCT 60.748 55.000 0.00 0.00 0.00 3.01
1691 1935 0.378257 CGCCCCGATTGATTGTTCTG 59.622 55.000 0.00 0.00 0.00 3.02
1692 1936 0.101219 GCCCCGATTGATTGTTCTGC 59.899 55.000 0.00 0.00 0.00 4.26
1693 1937 0.740737 CCCCGATTGATTGTTCTGCC 59.259 55.000 0.00 0.00 0.00 4.85
1694 1938 0.378257 CCCGATTGATTGTTCTGCCG 59.622 55.000 0.00 0.00 0.00 5.69
1695 1939 1.086696 CCGATTGATTGTTCTGCCGT 58.913 50.000 0.00 0.00 0.00 5.68
1696 1940 1.062587 CCGATTGATTGTTCTGCCGTC 59.937 52.381 0.00 0.00 0.00 4.79
1697 1941 2.002586 CGATTGATTGTTCTGCCGTCT 58.997 47.619 0.00 0.00 0.00 4.18
1698 1942 2.222886 CGATTGATTGTTCTGCCGTCTG 60.223 50.000 0.00 0.00 0.00 3.51
1699 1943 2.254546 TTGATTGTTCTGCCGTCTGT 57.745 45.000 0.00 0.00 0.00 3.41
1700 1944 1.795768 TGATTGTTCTGCCGTCTGTC 58.204 50.000 0.00 0.00 0.00 3.51
1701 1945 1.344438 TGATTGTTCTGCCGTCTGTCT 59.656 47.619 0.00 0.00 0.00 3.41
1702 1946 1.728971 GATTGTTCTGCCGTCTGTCTG 59.271 52.381 0.00 0.00 0.00 3.51
1703 1947 0.880278 TTGTTCTGCCGTCTGTCTGC 60.880 55.000 0.00 0.00 0.00 4.26
1704 1948 2.029844 GTTCTGCCGTCTGTCTGCC 61.030 63.158 0.00 0.00 0.00 4.85
1705 1949 2.506957 TTCTGCCGTCTGTCTGCCA 61.507 57.895 0.00 0.00 0.00 4.92
1706 1950 2.715532 TTCTGCCGTCTGTCTGCCAC 62.716 60.000 0.00 0.00 0.00 5.01
1707 1951 4.662961 TGCCGTCTGTCTGCCACG 62.663 66.667 0.00 0.00 0.00 4.94
1708 1952 4.357947 GCCGTCTGTCTGCCACGA 62.358 66.667 0.00 0.00 35.49 4.35
1709 1953 2.338620 CCGTCTGTCTGCCACGAA 59.661 61.111 0.00 0.00 35.49 3.85
1710 1954 1.300620 CCGTCTGTCTGCCACGAAA 60.301 57.895 0.00 0.00 35.49 3.46
1711 1955 0.670546 CCGTCTGTCTGCCACGAAAT 60.671 55.000 0.00 0.00 35.49 2.17
1727 1971 3.800506 ACGAAATAGTATTACTGCCACGC 59.199 43.478 6.60 0.00 0.00 5.34
1728 1972 3.183775 CGAAATAGTATTACTGCCACGCC 59.816 47.826 6.60 0.00 0.00 5.68
1729 1973 3.830744 AATAGTATTACTGCCACGCCA 57.169 42.857 6.60 0.00 0.00 5.69
1730 1974 2.589798 TAGTATTACTGCCACGCCAC 57.410 50.000 6.60 0.00 0.00 5.01
1731 1975 0.459585 AGTATTACTGCCACGCCACG 60.460 55.000 0.00 0.00 0.00 4.94
1732 1976 1.153529 TATTACTGCCACGCCACGG 60.154 57.895 0.00 0.00 0.00 4.94
1739 1989 2.897846 CCACGCCACGGTGTTCAA 60.898 61.111 7.45 0.00 36.64 2.69
1750 2000 4.342772 CACGGTGTTCAAAGTTTTCAGAG 58.657 43.478 0.00 0.00 0.00 3.35
1756 2006 6.315393 GGTGTTCAAAGTTTTCAGAGTGTCTA 59.685 38.462 0.00 0.00 0.00 2.59
1835 2089 0.393944 ATCGCACTACTCCTGGACGA 60.394 55.000 7.20 7.20 0.00 4.20
1981 2235 5.116882 AGAGCACGAGACTTTAGTGTTTTT 58.883 37.500 0.00 0.00 38.10 1.94
2009 2263 2.009681 TTTTTGAGGGGAAGGCCTTC 57.990 50.000 33.67 33.67 38.80 3.46
2010 2264 0.856982 TTTTGAGGGGAAGGCCTTCA 59.143 50.000 39.29 22.23 41.20 3.02
2011 2265 1.084018 TTTGAGGGGAAGGCCTTCAT 58.916 50.000 39.29 27.20 41.20 2.57
2012 2266 0.332632 TTGAGGGGAAGGCCTTCATG 59.667 55.000 39.29 0.00 41.20 3.07
2013 2267 1.228510 GAGGGGAAGGCCTTCATGG 59.771 63.158 39.29 0.00 41.20 3.66
2027 2281 5.841957 CCTTCATGGCTGCTTTATTAACT 57.158 39.130 0.00 0.00 0.00 2.24
2028 2282 5.825507 CCTTCATGGCTGCTTTATTAACTC 58.174 41.667 0.00 0.00 0.00 3.01
2029 2283 5.357878 CCTTCATGGCTGCTTTATTAACTCA 59.642 40.000 0.00 0.00 0.00 3.41
2030 2284 6.040166 CCTTCATGGCTGCTTTATTAACTCAT 59.960 38.462 0.00 0.00 0.00 2.90
2031 2285 7.229306 CCTTCATGGCTGCTTTATTAACTCATA 59.771 37.037 0.00 0.00 0.00 2.15
2032 2286 8.518430 TTCATGGCTGCTTTATTAACTCATAA 57.482 30.769 0.00 0.00 0.00 1.90
2033 2287 8.696043 TCATGGCTGCTTTATTAACTCATAAT 57.304 30.769 0.00 0.00 37.89 1.28
2034 2288 9.791801 TCATGGCTGCTTTATTAACTCATAATA 57.208 29.630 0.00 0.00 35.77 0.98
2053 2307 9.273016 TCATAATAAACTTACATCTGCTAAGGC 57.727 33.333 0.00 0.00 39.26 4.35
2070 2324 8.321650 TGCTAAGGCATTCAAAATTAAAAAGG 57.678 30.769 0.00 0.00 44.28 3.11
2071 2325 7.390162 TGCTAAGGCATTCAAAATTAAAAAGGG 59.610 33.333 0.00 0.00 44.28 3.95
2072 2326 7.148255 GCTAAGGCATTCAAAATTAAAAAGGGG 60.148 37.037 0.00 0.00 38.54 4.79
2073 2327 5.569355 AGGCATTCAAAATTAAAAAGGGGG 58.431 37.500 0.00 0.00 0.00 5.40
2074 2328 5.311913 AGGCATTCAAAATTAAAAAGGGGGA 59.688 36.000 0.00 0.00 0.00 4.81
2075 2329 5.647658 GGCATTCAAAATTAAAAAGGGGGAG 59.352 40.000 0.00 0.00 0.00 4.30
2076 2330 6.237901 GCATTCAAAATTAAAAAGGGGGAGT 58.762 36.000 0.00 0.00 0.00 3.85
2077 2331 7.390823 GCATTCAAAATTAAAAAGGGGGAGTA 58.609 34.615 0.00 0.00 0.00 2.59
2078 2332 8.046708 GCATTCAAAATTAAAAAGGGGGAGTAT 58.953 33.333 0.00 0.00 0.00 2.12
2079 2333 9.599866 CATTCAAAATTAAAAAGGGGGAGTATC 57.400 33.333 0.00 0.00 0.00 2.24
2090 2344 2.025727 GAGTATCCGACCACGCCG 59.974 66.667 0.00 0.00 38.29 6.46
2091 2345 2.753043 AGTATCCGACCACGCCGT 60.753 61.111 0.00 0.00 38.29 5.68
2092 2346 2.278401 GTATCCGACCACGCCGTC 60.278 66.667 0.00 0.00 38.29 4.79
2100 2354 4.752879 CCACGCCGTCGGTGGATT 62.753 66.667 27.47 5.16 38.36 3.01
2101 2355 2.182284 CACGCCGTCGGTGGATTA 59.818 61.111 27.47 0.00 40.69 1.75
2102 2356 2.162754 CACGCCGTCGGTGGATTAC 61.163 63.158 27.47 1.20 40.69 1.89
2103 2357 2.584143 CGCCGTCGGTGGATTACC 60.584 66.667 17.30 0.00 46.56 2.85
2110 2364 4.512053 GGTGGATTACCCCTCCCA 57.488 61.111 0.00 0.00 44.15 4.37
2111 2365 2.717958 GGTGGATTACCCCTCCCAA 58.282 57.895 0.00 0.00 44.15 4.12
2112 2366 1.004436 GGTGGATTACCCCTCCCAAA 58.996 55.000 0.00 0.00 44.15 3.28
2113 2367 1.063942 GGTGGATTACCCCTCCCAAAG 60.064 57.143 0.00 0.00 44.15 2.77
2114 2368 0.629058 TGGATTACCCCTCCCAAAGC 59.371 55.000 0.00 0.00 34.81 3.51
2115 2369 0.927029 GGATTACCCCTCCCAAAGCT 59.073 55.000 0.00 0.00 0.00 3.74
2116 2370 2.132686 GGATTACCCCTCCCAAAGCTA 58.867 52.381 0.00 0.00 0.00 3.32
2117 2371 2.106684 GGATTACCCCTCCCAAAGCTAG 59.893 54.545 0.00 0.00 0.00 3.42
2118 2372 0.916809 TTACCCCTCCCAAAGCTAGC 59.083 55.000 6.62 6.62 0.00 3.42
2119 2373 0.044244 TACCCCTCCCAAAGCTAGCT 59.956 55.000 12.68 12.68 0.00 3.32
2120 2374 0.044244 ACCCCTCCCAAAGCTAGCTA 59.956 55.000 19.70 0.00 0.00 3.32
2121 2375 0.761802 CCCCTCCCAAAGCTAGCTAG 59.238 60.000 19.70 16.84 0.00 3.42
2141 2395 2.819422 CTCATGAGCAACCATGTTCG 57.181 50.000 10.38 0.00 43.22 3.95
2142 2396 2.349590 CTCATGAGCAACCATGTTCGA 58.650 47.619 10.38 0.00 43.22 3.71
2143 2397 2.941064 CTCATGAGCAACCATGTTCGAT 59.059 45.455 10.38 0.00 43.22 3.59
2144 2398 2.938451 TCATGAGCAACCATGTTCGATC 59.062 45.455 11.67 0.00 43.22 3.69
2145 2399 1.737838 TGAGCAACCATGTTCGATCC 58.262 50.000 0.00 0.00 39.43 3.36
2146 2400 1.278985 TGAGCAACCATGTTCGATCCT 59.721 47.619 0.00 0.00 39.43 3.24
2147 2401 1.936547 GAGCAACCATGTTCGATCCTC 59.063 52.381 0.00 0.00 0.00 3.71
2148 2402 1.556911 AGCAACCATGTTCGATCCTCT 59.443 47.619 0.00 0.00 0.00 3.69
2149 2403 2.766263 AGCAACCATGTTCGATCCTCTA 59.234 45.455 0.00 0.00 0.00 2.43
2150 2404 2.866762 GCAACCATGTTCGATCCTCTAC 59.133 50.000 0.00 0.00 0.00 2.59
2151 2405 3.430929 GCAACCATGTTCGATCCTCTACT 60.431 47.826 0.00 0.00 0.00 2.57
2152 2406 4.202121 GCAACCATGTTCGATCCTCTACTA 60.202 45.833 0.00 0.00 0.00 1.82
2153 2407 5.282510 CAACCATGTTCGATCCTCTACTAC 58.717 45.833 0.00 0.00 0.00 2.73
2154 2408 4.533815 ACCATGTTCGATCCTCTACTACA 58.466 43.478 0.00 0.00 0.00 2.74
2155 2409 4.954202 ACCATGTTCGATCCTCTACTACAA 59.046 41.667 0.00 0.00 0.00 2.41
2156 2410 5.598830 ACCATGTTCGATCCTCTACTACAAT 59.401 40.000 0.00 0.00 0.00 2.71
2157 2411 5.923114 CCATGTTCGATCCTCTACTACAATG 59.077 44.000 0.00 0.00 0.00 2.82
2158 2412 6.461648 CCATGTTCGATCCTCTACTACAATGT 60.462 42.308 0.00 0.00 0.00 2.71
2159 2413 6.525578 TGTTCGATCCTCTACTACAATGTT 57.474 37.500 0.00 0.00 0.00 2.71
2160 2414 6.561614 TGTTCGATCCTCTACTACAATGTTC 58.438 40.000 0.00 0.00 0.00 3.18
2161 2415 5.419760 TCGATCCTCTACTACAATGTTCG 57.580 43.478 0.00 0.00 0.00 3.95
2162 2416 5.121105 TCGATCCTCTACTACAATGTTCGA 58.879 41.667 0.00 0.00 0.00 3.71
2163 2417 5.763698 TCGATCCTCTACTACAATGTTCGAT 59.236 40.000 0.00 0.00 0.00 3.59
2164 2418 6.932960 TCGATCCTCTACTACAATGTTCGATA 59.067 38.462 0.00 0.00 0.00 2.92
2165 2419 7.443272 TCGATCCTCTACTACAATGTTCGATAA 59.557 37.037 0.00 0.00 0.00 1.75
2166 2420 8.237949 CGATCCTCTACTACAATGTTCGATAAT 58.762 37.037 0.00 0.00 0.00 1.28
2167 2421 9.347934 GATCCTCTACTACAATGTTCGATAATG 57.652 37.037 0.00 0.00 0.00 1.90
2168 2422 8.459911 TCCTCTACTACAATGTTCGATAATGA 57.540 34.615 0.00 0.00 0.00 2.57
2169 2423 8.350722 TCCTCTACTACAATGTTCGATAATGAC 58.649 37.037 0.00 0.00 0.00 3.06
2170 2424 7.595502 CCTCTACTACAATGTTCGATAATGACC 59.404 40.741 0.00 0.00 0.00 4.02
2171 2425 8.234136 TCTACTACAATGTTCGATAATGACCT 57.766 34.615 0.00 0.00 0.00 3.85
2172 2426 9.346005 TCTACTACAATGTTCGATAATGACCTA 57.654 33.333 0.00 0.00 0.00 3.08
2173 2427 9.395707 CTACTACAATGTTCGATAATGACCTAC 57.604 37.037 0.00 0.00 0.00 3.18
2174 2428 8.008513 ACTACAATGTTCGATAATGACCTACT 57.991 34.615 0.00 0.00 0.00 2.57
2175 2429 7.921214 ACTACAATGTTCGATAATGACCTACTG 59.079 37.037 0.00 0.00 0.00 2.74
2176 2430 6.873997 ACAATGTTCGATAATGACCTACTGA 58.126 36.000 0.00 0.00 0.00 3.41
2177 2431 7.327975 ACAATGTTCGATAATGACCTACTGAA 58.672 34.615 0.00 0.00 0.00 3.02
2178 2432 7.822334 ACAATGTTCGATAATGACCTACTGAAA 59.178 33.333 0.00 0.00 0.00 2.69
2179 2433 8.830580 CAATGTTCGATAATGACCTACTGAAAT 58.169 33.333 0.00 0.00 0.00 2.17
2180 2434 8.594881 ATGTTCGATAATGACCTACTGAAATC 57.405 34.615 0.00 0.00 0.00 2.17
2181 2435 7.782049 TGTTCGATAATGACCTACTGAAATCT 58.218 34.615 0.00 0.00 0.00 2.40
2182 2436 8.258007 TGTTCGATAATGACCTACTGAAATCTT 58.742 33.333 0.00 0.00 0.00 2.40
2183 2437 9.099454 GTTCGATAATGACCTACTGAAATCTTT 57.901 33.333 0.00 0.00 0.00 2.52
2198 2452 9.005777 ACTGAAATCTTTAAGTAAATTACGGCA 57.994 29.630 0.00 0.00 29.99 5.69
2199 2453 9.834628 CTGAAATCTTTAAGTAAATTACGGCAA 57.165 29.630 0.00 0.00 0.00 4.52
2202 2456 9.797556 AAATCTTTAAGTAAATTACGGCAATCC 57.202 29.630 0.00 0.00 0.00 3.01
2203 2457 8.747538 ATCTTTAAGTAAATTACGGCAATCCT 57.252 30.769 0.00 0.00 0.00 3.24
2204 2458 8.205131 TCTTTAAGTAAATTACGGCAATCCTC 57.795 34.615 0.00 0.00 0.00 3.71
2205 2459 6.930667 TTAAGTAAATTACGGCAATCCTCC 57.069 37.500 0.00 0.00 0.00 4.30
2206 2460 4.497291 AGTAAATTACGGCAATCCTCCA 57.503 40.909 0.00 0.00 0.00 3.86
2207 2461 4.451900 AGTAAATTACGGCAATCCTCCAG 58.548 43.478 0.00 0.00 0.00 3.86
2208 2462 3.644966 AAATTACGGCAATCCTCCAGA 57.355 42.857 0.00 0.00 0.00 3.86
2209 2463 3.644966 AATTACGGCAATCCTCCAGAA 57.355 42.857 0.00 0.00 0.00 3.02
2210 2464 3.864789 ATTACGGCAATCCTCCAGAAT 57.135 42.857 0.00 0.00 0.00 2.40
2211 2465 3.644966 TTACGGCAATCCTCCAGAATT 57.355 42.857 0.00 0.00 0.00 2.17
2212 2466 1.755179 ACGGCAATCCTCCAGAATTG 58.245 50.000 0.00 0.00 0.00 2.32
2213 2467 1.027357 CGGCAATCCTCCAGAATTGG 58.973 55.000 0.00 0.00 46.49 3.16
2214 2468 0.749049 GGCAATCCTCCAGAATTGGC 59.251 55.000 5.98 5.98 44.63 4.52
2215 2469 0.383231 GCAATCCTCCAGAATTGGCG 59.617 55.000 0.00 0.00 44.63 5.69
2216 2470 0.383231 CAATCCTCCAGAATTGGCGC 59.617 55.000 0.00 0.00 44.63 6.53
2217 2471 0.034186 AATCCTCCAGAATTGGCGCA 60.034 50.000 10.83 0.00 44.63 6.09
2218 2472 0.465097 ATCCTCCAGAATTGGCGCAG 60.465 55.000 10.83 0.00 44.63 5.18
2231 2485 3.589579 CGCAGCCACCAAAGCATA 58.410 55.556 0.00 0.00 0.00 3.14
2232 2486 1.137404 CGCAGCCACCAAAGCATAC 59.863 57.895 0.00 0.00 0.00 2.39
2233 2487 1.512694 GCAGCCACCAAAGCATACC 59.487 57.895 0.00 0.00 0.00 2.73
2234 2488 1.948721 GCAGCCACCAAAGCATACCC 61.949 60.000 0.00 0.00 0.00 3.69
2235 2489 0.323725 CAGCCACCAAAGCATACCCT 60.324 55.000 0.00 0.00 0.00 4.34
2236 2490 0.409484 AGCCACCAAAGCATACCCTT 59.591 50.000 0.00 0.00 0.00 3.95
2237 2491 0.817654 GCCACCAAAGCATACCCTTC 59.182 55.000 0.00 0.00 0.00 3.46
2238 2492 1.890573 GCCACCAAAGCATACCCTTCA 60.891 52.381 0.00 0.00 0.00 3.02
2239 2493 2.738743 CCACCAAAGCATACCCTTCAT 58.261 47.619 0.00 0.00 0.00 2.57
2240 2494 3.099141 CCACCAAAGCATACCCTTCATT 58.901 45.455 0.00 0.00 0.00 2.57
2241 2495 3.131046 CCACCAAAGCATACCCTTCATTC 59.869 47.826 0.00 0.00 0.00 2.67
2242 2496 3.763360 CACCAAAGCATACCCTTCATTCA 59.237 43.478 0.00 0.00 0.00 2.57
2243 2497 4.019174 ACCAAAGCATACCCTTCATTCAG 58.981 43.478 0.00 0.00 0.00 3.02
2244 2498 3.181483 CCAAAGCATACCCTTCATTCAGC 60.181 47.826 0.00 0.00 0.00 4.26
2245 2499 2.355010 AGCATACCCTTCATTCAGCC 57.645 50.000 0.00 0.00 0.00 4.85
2246 2500 1.849039 AGCATACCCTTCATTCAGCCT 59.151 47.619 0.00 0.00 0.00 4.58
2247 2501 2.158696 AGCATACCCTTCATTCAGCCTC 60.159 50.000 0.00 0.00 0.00 4.70
2248 2502 2.421952 GCATACCCTTCATTCAGCCTCA 60.422 50.000 0.00 0.00 0.00 3.86
2249 2503 3.889815 CATACCCTTCATTCAGCCTCAA 58.110 45.455 0.00 0.00 0.00 3.02
2250 2504 4.467769 CATACCCTTCATTCAGCCTCAAT 58.532 43.478 0.00 0.00 0.00 2.57
2251 2505 2.731572 ACCCTTCATTCAGCCTCAATG 58.268 47.619 0.00 0.00 33.22 2.82
2252 2506 1.407979 CCCTTCATTCAGCCTCAATGC 59.592 52.381 0.00 0.00 32.17 3.56
2253 2507 2.097036 CCTTCATTCAGCCTCAATGCA 58.903 47.619 0.00 0.00 32.17 3.96
2254 2508 2.693591 CCTTCATTCAGCCTCAATGCAT 59.306 45.455 0.00 0.00 32.17 3.96
2255 2509 3.243434 CCTTCATTCAGCCTCAATGCATC 60.243 47.826 0.00 0.00 32.17 3.91
2256 2510 2.304092 TCATTCAGCCTCAATGCATCC 58.696 47.619 0.00 0.00 32.17 3.51
2257 2511 2.028876 CATTCAGCCTCAATGCATCCA 58.971 47.619 0.00 0.00 0.00 3.41
2258 2512 1.466856 TTCAGCCTCAATGCATCCAC 58.533 50.000 0.00 0.00 0.00 4.02
2259 2513 0.745486 TCAGCCTCAATGCATCCACG 60.745 55.000 0.00 0.00 0.00 4.94
2260 2514 0.745486 CAGCCTCAATGCATCCACGA 60.745 55.000 0.00 0.00 0.00 4.35
2261 2515 0.745845 AGCCTCAATGCATCCACGAC 60.746 55.000 0.00 0.00 0.00 4.34
2262 2516 2.009108 CCTCAATGCATCCACGACG 58.991 57.895 0.00 0.00 0.00 5.12
2263 2517 0.460109 CCTCAATGCATCCACGACGA 60.460 55.000 0.00 0.00 0.00 4.20
2264 2518 1.575244 CTCAATGCATCCACGACGAT 58.425 50.000 0.00 0.00 0.00 3.73
2265 2519 1.524355 CTCAATGCATCCACGACGATC 59.476 52.381 0.00 0.00 0.00 3.69
2266 2520 1.134848 TCAATGCATCCACGACGATCA 60.135 47.619 0.00 0.00 0.00 2.92
2267 2521 1.665169 CAATGCATCCACGACGATCAA 59.335 47.619 0.00 0.00 0.00 2.57
2268 2522 1.575244 ATGCATCCACGACGATCAAG 58.425 50.000 0.00 0.00 0.00 3.02
2269 2523 0.530288 TGCATCCACGACGATCAAGA 59.470 50.000 0.00 0.00 0.00 3.02
2270 2524 1.136891 TGCATCCACGACGATCAAGAT 59.863 47.619 0.00 0.00 0.00 2.40
2271 2525 2.360801 TGCATCCACGACGATCAAGATA 59.639 45.455 0.00 0.00 0.00 1.98
2272 2526 3.005791 TGCATCCACGACGATCAAGATAT 59.994 43.478 0.00 0.00 0.00 1.63
2273 2527 3.610242 GCATCCACGACGATCAAGATATC 59.390 47.826 0.00 0.00 0.00 1.63
2274 2528 4.798574 CATCCACGACGATCAAGATATCA 58.201 43.478 0.00 0.00 0.00 2.15
2275 2529 4.489679 TCCACGACGATCAAGATATCAG 57.510 45.455 0.00 0.00 0.00 2.90
2276 2530 4.134563 TCCACGACGATCAAGATATCAGA 58.865 43.478 0.00 2.90 0.00 3.27
2277 2531 4.762251 TCCACGACGATCAAGATATCAGAT 59.238 41.667 0.00 7.86 0.00 2.90
2278 2532 5.241728 TCCACGACGATCAAGATATCAGATT 59.758 40.000 0.00 0.00 0.00 2.40
2279 2533 5.344396 CCACGACGATCAAGATATCAGATTG 59.656 44.000 17.45 17.45 0.00 2.67
2280 2534 6.145535 CACGACGATCAAGATATCAGATTGA 58.854 40.000 22.49 16.14 37.36 2.57
2281 2535 6.638468 CACGACGATCAAGATATCAGATTGAA 59.362 38.462 22.49 5.61 36.59 2.69
2282 2536 7.328005 CACGACGATCAAGATATCAGATTGAAT 59.672 37.037 22.49 9.05 36.59 2.57
2283 2537 7.540400 ACGACGATCAAGATATCAGATTGAATC 59.460 37.037 22.49 14.03 36.59 2.52
2284 2538 7.540055 CGACGATCAAGATATCAGATTGAATCA 59.460 37.037 22.49 0.00 36.59 2.57
2285 2539 8.531622 ACGATCAAGATATCAGATTGAATCAC 57.468 34.615 22.49 10.21 36.59 3.06
2286 2540 8.146412 ACGATCAAGATATCAGATTGAATCACA 58.854 33.333 22.49 0.00 36.59 3.58
2287 2541 8.985805 CGATCAAGATATCAGATTGAATCACAA 58.014 33.333 15.37 0.00 42.95 3.33
2305 2559 2.124736 TGCTATCGCACCCAAGGC 60.125 61.111 0.00 0.00 42.25 4.35
2306 2560 2.902343 GCTATCGCACCCAAGGCC 60.902 66.667 0.00 0.00 35.78 5.19
2307 2561 2.589540 CTATCGCACCCAAGGCCA 59.410 61.111 5.01 0.00 0.00 5.36
2308 2562 1.819632 CTATCGCACCCAAGGCCAC 60.820 63.158 5.01 0.00 0.00 5.01
2309 2563 3.673956 TATCGCACCCAAGGCCACG 62.674 63.158 5.01 0.00 0.00 4.94
2311 2565 4.690719 CGCACCCAAGGCCACGTA 62.691 66.667 5.01 0.00 0.00 3.57
2312 2566 2.045340 GCACCCAAGGCCACGTAT 60.045 61.111 5.01 0.00 0.00 3.06
2313 2567 2.406616 GCACCCAAGGCCACGTATG 61.407 63.158 5.01 0.00 0.00 2.39
2314 2568 1.298340 CACCCAAGGCCACGTATGA 59.702 57.895 5.01 0.00 0.00 2.15
2315 2569 0.322098 CACCCAAGGCCACGTATGAA 60.322 55.000 5.01 0.00 0.00 2.57
2316 2570 0.322187 ACCCAAGGCCACGTATGAAC 60.322 55.000 5.01 0.00 0.00 3.18
2317 2571 0.322098 CCCAAGGCCACGTATGAACA 60.322 55.000 5.01 0.00 0.00 3.18
2318 2572 1.681780 CCCAAGGCCACGTATGAACAT 60.682 52.381 5.01 0.00 0.00 2.71
2319 2573 1.401552 CCAAGGCCACGTATGAACATG 59.598 52.381 5.01 0.00 0.00 3.21
2320 2574 2.355197 CAAGGCCACGTATGAACATGA 58.645 47.619 5.01 0.00 0.00 3.07
2321 2575 2.945008 CAAGGCCACGTATGAACATGAT 59.055 45.455 5.01 0.00 0.00 2.45
2322 2576 3.281727 AGGCCACGTATGAACATGATT 57.718 42.857 5.01 0.00 0.00 2.57
2323 2577 3.206150 AGGCCACGTATGAACATGATTC 58.794 45.455 5.01 0.12 0.00 2.52
2324 2578 2.290641 GGCCACGTATGAACATGATTCC 59.709 50.000 0.00 0.00 0.00 3.01
2325 2579 2.290641 GCCACGTATGAACATGATTCCC 59.709 50.000 0.00 0.00 0.00 3.97
2326 2580 3.808728 CCACGTATGAACATGATTCCCT 58.191 45.455 0.00 0.00 0.00 4.20
2327 2581 3.561310 CCACGTATGAACATGATTCCCTG 59.439 47.826 0.00 0.00 0.00 4.45
2328 2582 3.561310 CACGTATGAACATGATTCCCTGG 59.439 47.826 0.00 0.00 0.00 4.45
2329 2583 3.199946 ACGTATGAACATGATTCCCTGGT 59.800 43.478 0.00 0.00 0.00 4.00
2330 2584 3.561310 CGTATGAACATGATTCCCTGGTG 59.439 47.826 0.00 0.00 0.00 4.17
2331 2585 1.838112 TGAACATGATTCCCTGGTGC 58.162 50.000 0.00 0.00 0.00 5.01
2332 2586 1.075212 TGAACATGATTCCCTGGTGCA 59.925 47.619 0.00 0.00 0.00 4.57
2333 2587 2.291735 TGAACATGATTCCCTGGTGCAT 60.292 45.455 0.00 0.00 0.00 3.96
2334 2588 1.771565 ACATGATTCCCTGGTGCATG 58.228 50.000 0.00 0.00 41.44 4.06
2335 2589 1.037493 CATGATTCCCTGGTGCATGG 58.963 55.000 0.00 0.00 34.29 3.66
2336 2590 0.757935 ATGATTCCCTGGTGCATGGC 60.758 55.000 0.00 0.00 0.00 4.40
2337 2591 2.042639 ATTCCCTGGTGCATGGCC 60.043 61.111 0.00 0.00 0.00 5.36
2338 2592 2.578586 GATTCCCTGGTGCATGGCCT 62.579 60.000 3.32 0.00 0.00 5.19
2339 2593 2.578586 ATTCCCTGGTGCATGGCCTC 62.579 60.000 3.32 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.216708 TGCATGATGGGCAGATTCAATAA 58.783 39.130 0.00 0.00 36.11 1.40
232 234 1.295423 CGGCAATAGGATACGGGGG 59.705 63.158 0.00 0.00 46.39 5.40
276 279 0.027716 ACGACGATCGATCTTGACCG 59.972 55.000 24.34 18.06 43.74 4.79
435 453 0.690192 TTGCCTCGATCAAACCTCCA 59.310 50.000 0.00 0.00 0.00 3.86
479 500 3.333189 CGATCCACATGCGCCTCG 61.333 66.667 4.18 0.00 0.00 4.63
480 501 2.202932 ACGATCCACATGCGCCTC 60.203 61.111 4.18 0.00 0.00 4.70
481 502 1.955495 TACACGATCCACATGCGCCT 61.955 55.000 4.18 0.00 0.00 5.52
482 503 0.880278 ATACACGATCCACATGCGCC 60.880 55.000 4.18 0.00 0.00 6.53
483 504 0.937304 AATACACGATCCACATGCGC 59.063 50.000 0.00 0.00 0.00 6.09
484 505 3.553917 TGTTAATACACGATCCACATGCG 59.446 43.478 0.00 0.00 0.00 4.73
510 531 5.554822 ACAAAATGTGTGTACTTCGTTGT 57.445 34.783 0.00 0.00 39.72 3.32
528 549 6.403866 AAGATCAAATGGCAGTACAACAAA 57.596 33.333 0.00 0.00 0.00 2.83
529 550 7.517614 TTAAGATCAAATGGCAGTACAACAA 57.482 32.000 0.00 0.00 0.00 2.83
530 551 7.517614 TTTAAGATCAAATGGCAGTACAACA 57.482 32.000 0.00 0.00 0.00 3.33
531 552 8.986477 AATTTAAGATCAAATGGCAGTACAAC 57.014 30.769 0.00 0.00 0.00 3.32
579 600 1.741394 GCGGTGTTAATTAGGGCGTCT 60.741 52.381 0.00 0.00 0.00 4.18
601 622 3.976701 AAACGGCTGGCCAGATCCG 62.977 63.158 36.11 36.11 46.61 4.18
613 634 0.885196 TGGTAATCAAGGCAAACGGC 59.115 50.000 0.00 0.00 43.74 5.68
622 643 4.156739 GTCTTTTGCCTCCTGGTAATCAAG 59.843 45.833 0.00 0.00 37.76 3.02
624 645 3.073798 TGTCTTTTGCCTCCTGGTAATCA 59.926 43.478 0.00 0.00 37.76 2.57
626 647 3.806949 TGTCTTTTGCCTCCTGGTAAT 57.193 42.857 0.00 0.00 37.76 1.89
635 656 2.641815 AGAGGACTGATGTCTTTTGCCT 59.358 45.455 0.00 0.00 42.54 4.75
637 659 3.124297 CGAAGAGGACTGATGTCTTTTGC 59.876 47.826 0.00 0.00 42.54 3.68
662 684 8.667076 AAAAACAAGAAAATCCTCATTTCTGG 57.333 30.769 2.59 2.61 44.22 3.86
710 888 7.703328 TGACTGACTTTTCAACCTGTAATTTC 58.297 34.615 0.00 0.00 0.00 2.17
715 893 5.008613 GCAATGACTGACTTTTCAACCTGTA 59.991 40.000 0.00 0.00 0.00 2.74
716 894 4.202050 GCAATGACTGACTTTTCAACCTGT 60.202 41.667 0.00 0.00 0.00 4.00
717 895 4.293415 GCAATGACTGACTTTTCAACCTG 58.707 43.478 0.00 0.00 0.00 4.00
835 1048 1.084370 GTAGTGGCCGTGATGCAGAC 61.084 60.000 0.00 0.00 0.00 3.51
836 1049 1.218047 GTAGTGGCCGTGATGCAGA 59.782 57.895 0.00 0.00 0.00 4.26
837 1050 1.815421 GGTAGTGGCCGTGATGCAG 60.815 63.158 0.00 0.00 0.00 4.41
838 1051 2.267642 GGTAGTGGCCGTGATGCA 59.732 61.111 0.00 0.00 0.00 3.96
839 1052 2.513897 GGGTAGTGGCCGTGATGC 60.514 66.667 0.00 0.00 0.00 3.91
840 1053 2.189521 GGGGTAGTGGCCGTGATG 59.810 66.667 0.00 0.00 0.00 3.07
841 1054 2.285069 TGGGGTAGTGGCCGTGAT 60.285 61.111 0.00 0.00 0.00 3.06
842 1055 3.315949 GTGGGGTAGTGGCCGTGA 61.316 66.667 0.00 0.00 0.00 4.35
843 1056 3.632080 TGTGGGGTAGTGGCCGTG 61.632 66.667 0.00 0.00 0.00 4.94
844 1057 3.633116 GTGTGGGGTAGTGGCCGT 61.633 66.667 0.00 0.00 0.00 5.68
1039 1270 2.412112 GACGAGGAGCGCGGTAAT 59.588 61.111 12.41 1.65 46.04 1.89
1103 1334 2.108362 CGCCACCGTAATCCTCCC 59.892 66.667 0.00 0.00 0.00 4.30
1203 1440 3.973516 TAGCCGATGTAGCCGCCG 61.974 66.667 0.00 0.00 0.00 6.46
1350 1587 1.213094 AAGCTGTACGTCGTGTGTGC 61.213 55.000 8.47 7.20 0.00 4.57
1351 1588 0.776451 GAAGCTGTACGTCGTGTGTG 59.224 55.000 8.47 0.00 0.00 3.82
1359 1596 1.005687 AGGTAGGAGGAAGCTGTACGT 59.994 52.381 0.00 0.00 0.00 3.57
1391 1628 0.659417 GAGCACTCGACGACGACAAA 60.659 55.000 5.75 0.00 43.81 2.83
1392 1629 1.082300 GAGCACTCGACGACGACAA 60.082 57.895 5.75 0.00 43.81 3.18
1393 1630 2.554775 GAGCACTCGACGACGACA 59.445 61.111 5.75 0.00 43.81 4.35
1405 1642 0.788391 CTACAAAACCGGACGAGCAC 59.212 55.000 9.46 0.00 0.00 4.40
1418 1655 9.485206 GTCTTACAACTTACAAGATCCTACAAA 57.515 33.333 0.00 0.00 31.40 2.83
1451 1692 8.801299 GGAGGAAGAAGAAGAAGAAAATCAATT 58.199 33.333 0.00 0.00 0.00 2.32
1462 1703 1.544691 CGACGGGAGGAAGAAGAAGAA 59.455 52.381 0.00 0.00 0.00 2.52
1533 1775 2.684374 TCATGGATGATTTGCTCAACGG 59.316 45.455 0.00 0.00 37.44 4.44
1554 1796 6.010219 ACATTGCCTCCAATTACAAACTAGT 58.990 36.000 0.00 0.00 39.60 2.57
1558 1800 5.407502 GGTACATTGCCTCCAATTACAAAC 58.592 41.667 0.00 0.00 39.60 2.93
1604 1848 7.595502 CAGTAGAGTTCAAACGAATCAGTAACT 59.404 37.037 0.00 0.00 0.00 2.24
1625 1869 4.380087 CGAGCATTACTAATCGCACAGTAG 59.620 45.833 0.00 0.00 0.00 2.57
1638 1882 3.983988 CGTATGAGCAATCGAGCATTACT 59.016 43.478 0.00 0.00 36.85 2.24
1643 1887 1.135112 ACACGTATGAGCAATCGAGCA 60.135 47.619 0.00 0.00 36.85 4.26
1644 1888 1.560923 ACACGTATGAGCAATCGAGC 58.439 50.000 0.00 0.00 0.00 5.03
1645 1889 6.143496 AGTTATACACGTATGAGCAATCGAG 58.857 40.000 0.00 0.00 0.00 4.04
1646 1890 6.068473 AGTTATACACGTATGAGCAATCGA 57.932 37.500 0.00 0.00 0.00 3.59
1647 1891 5.342525 GGAGTTATACACGTATGAGCAATCG 59.657 44.000 0.00 0.00 0.00 3.34
1648 1892 5.634020 GGGAGTTATACACGTATGAGCAATC 59.366 44.000 0.00 0.00 0.00 2.67
1649 1893 5.539048 GGGAGTTATACACGTATGAGCAAT 58.461 41.667 0.00 0.00 0.00 3.56
1650 1894 4.498513 CGGGAGTTATACACGTATGAGCAA 60.499 45.833 0.00 0.00 0.00 3.91
1651 1895 3.004002 CGGGAGTTATACACGTATGAGCA 59.996 47.826 0.00 0.00 0.00 4.26
1652 1896 3.562505 CGGGAGTTATACACGTATGAGC 58.437 50.000 0.00 0.00 0.00 4.26
1653 1897 3.562505 GCGGGAGTTATACACGTATGAG 58.437 50.000 0.00 0.00 0.00 2.90
1654 1898 2.294233 GGCGGGAGTTATACACGTATGA 59.706 50.000 0.00 0.00 0.00 2.15
1655 1899 2.608752 GGGCGGGAGTTATACACGTATG 60.609 54.545 0.00 0.00 0.00 2.39
1656 1900 1.615392 GGGCGGGAGTTATACACGTAT 59.385 52.381 0.00 0.00 0.00 3.06
1657 1901 1.032014 GGGCGGGAGTTATACACGTA 58.968 55.000 0.00 0.00 0.00 3.57
1658 1902 1.679559 GGGGCGGGAGTTATACACGT 61.680 60.000 0.00 0.00 0.00 4.49
1659 1903 1.068585 GGGGCGGGAGTTATACACG 59.931 63.158 0.00 0.00 0.00 4.49
1660 1904 1.068585 CGGGGCGGGAGTTATACAC 59.931 63.158 0.00 0.00 0.00 2.90
1661 1905 0.470456 ATCGGGGCGGGAGTTATACA 60.470 55.000 0.00 0.00 0.00 2.29
1662 1906 0.683412 AATCGGGGCGGGAGTTATAC 59.317 55.000 0.00 0.00 0.00 1.47
1663 1907 0.682852 CAATCGGGGCGGGAGTTATA 59.317 55.000 0.00 0.00 0.00 0.98
1664 1908 1.052124 TCAATCGGGGCGGGAGTTAT 61.052 55.000 0.00 0.00 0.00 1.89
1665 1909 1.052124 ATCAATCGGGGCGGGAGTTA 61.052 55.000 0.00 0.00 0.00 2.24
1666 1910 1.921869 AATCAATCGGGGCGGGAGTT 61.922 55.000 0.00 0.00 0.00 3.01
1667 1911 2.375345 AATCAATCGGGGCGGGAGT 61.375 57.895 0.00 0.00 0.00 3.85
1668 1912 1.893808 CAATCAATCGGGGCGGGAG 60.894 63.158 0.00 0.00 0.00 4.30
1669 1913 2.191908 CAATCAATCGGGGCGGGA 59.808 61.111 0.00 0.00 0.00 5.14
1670 1914 1.724582 GAACAATCAATCGGGGCGGG 61.725 60.000 0.00 0.00 0.00 6.13
1671 1915 0.748005 AGAACAATCAATCGGGGCGG 60.748 55.000 0.00 0.00 0.00 6.13
1672 1916 0.378257 CAGAACAATCAATCGGGGCG 59.622 55.000 0.00 0.00 0.00 6.13
1673 1917 0.101219 GCAGAACAATCAATCGGGGC 59.899 55.000 0.00 0.00 0.00 5.80
1674 1918 0.740737 GGCAGAACAATCAATCGGGG 59.259 55.000 0.00 0.00 0.00 5.73
1675 1919 0.378257 CGGCAGAACAATCAATCGGG 59.622 55.000 0.00 0.00 0.00 5.14
1676 1920 1.062587 GACGGCAGAACAATCAATCGG 59.937 52.381 0.00 0.00 0.00 4.18
1677 1921 2.002586 AGACGGCAGAACAATCAATCG 58.997 47.619 0.00 0.00 0.00 3.34
1678 1922 2.744202 ACAGACGGCAGAACAATCAATC 59.256 45.455 0.00 0.00 0.00 2.67
1679 1923 2.744202 GACAGACGGCAGAACAATCAAT 59.256 45.455 0.00 0.00 0.00 2.57
1680 1924 2.143122 GACAGACGGCAGAACAATCAA 58.857 47.619 0.00 0.00 0.00 2.57
1681 1925 1.344438 AGACAGACGGCAGAACAATCA 59.656 47.619 0.00 0.00 0.00 2.57
1682 1926 1.728971 CAGACAGACGGCAGAACAATC 59.271 52.381 0.00 0.00 0.00 2.67
1683 1927 1.800805 CAGACAGACGGCAGAACAAT 58.199 50.000 0.00 0.00 0.00 2.71
1684 1928 0.880278 GCAGACAGACGGCAGAACAA 60.880 55.000 0.00 0.00 39.38 2.83
1685 1929 1.300931 GCAGACAGACGGCAGAACA 60.301 57.895 0.00 0.00 39.38 3.18
1686 1930 2.029844 GGCAGACAGACGGCAGAAC 61.030 63.158 0.00 0.00 41.24 3.01
1687 1931 2.343758 GGCAGACAGACGGCAGAA 59.656 61.111 0.00 0.00 41.24 3.02
1688 1932 2.917227 TGGCAGACAGACGGCAGA 60.917 61.111 0.00 0.00 41.24 4.26
1689 1933 2.740055 GTGGCAGACAGACGGCAG 60.740 66.667 0.00 0.00 41.24 4.85
1690 1934 4.662961 CGTGGCAGACAGACGGCA 62.663 66.667 0.00 0.00 41.24 5.69
1691 1935 3.858868 TTCGTGGCAGACAGACGGC 62.859 63.158 0.00 0.00 38.89 5.68
1692 1936 0.670546 ATTTCGTGGCAGACAGACGG 60.671 55.000 0.00 0.00 33.88 4.79
1693 1937 1.920574 CTATTTCGTGGCAGACAGACG 59.079 52.381 0.00 0.00 34.38 4.18
1694 1938 2.960819 ACTATTTCGTGGCAGACAGAC 58.039 47.619 0.00 0.00 0.00 3.51
1695 1939 5.339008 AATACTATTTCGTGGCAGACAGA 57.661 39.130 0.00 0.00 0.00 3.41
1696 1940 6.199154 CAGTAATACTATTTCGTGGCAGACAG 59.801 42.308 0.00 0.00 0.00 3.51
1697 1941 6.040247 CAGTAATACTATTTCGTGGCAGACA 58.960 40.000 0.00 0.00 0.00 3.41
1698 1942 5.050972 GCAGTAATACTATTTCGTGGCAGAC 60.051 44.000 0.00 0.00 0.00 3.51
1699 1943 5.047847 GCAGTAATACTATTTCGTGGCAGA 58.952 41.667 0.00 0.00 0.00 4.26
1700 1944 4.211374 GGCAGTAATACTATTTCGTGGCAG 59.789 45.833 0.00 0.00 0.00 4.85
1701 1945 4.124238 GGCAGTAATACTATTTCGTGGCA 58.876 43.478 0.00 0.00 0.00 4.92
1702 1946 4.025145 GTGGCAGTAATACTATTTCGTGGC 60.025 45.833 0.00 0.00 0.00 5.01
1703 1947 4.208460 CGTGGCAGTAATACTATTTCGTGG 59.792 45.833 0.00 0.00 0.00 4.94
1704 1948 4.317839 GCGTGGCAGTAATACTATTTCGTG 60.318 45.833 0.00 0.00 0.00 4.35
1705 1949 3.800506 GCGTGGCAGTAATACTATTTCGT 59.199 43.478 0.00 0.00 0.00 3.85
1706 1950 3.183775 GGCGTGGCAGTAATACTATTTCG 59.816 47.826 0.00 0.00 0.00 3.46
1707 1951 4.025145 GTGGCGTGGCAGTAATACTATTTC 60.025 45.833 0.00 0.00 0.00 2.17
1708 1952 3.875134 GTGGCGTGGCAGTAATACTATTT 59.125 43.478 0.00 0.00 0.00 1.40
1709 1953 3.463944 GTGGCGTGGCAGTAATACTATT 58.536 45.455 0.00 0.00 0.00 1.73
1710 1954 2.545113 CGTGGCGTGGCAGTAATACTAT 60.545 50.000 0.00 0.00 0.00 2.12
1711 1955 1.202325 CGTGGCGTGGCAGTAATACTA 60.202 52.381 0.00 0.00 0.00 1.82
1727 1971 3.127895 TCTGAAAACTTTGAACACCGTGG 59.872 43.478 3.03 0.00 0.00 4.94
1728 1972 4.142687 ACTCTGAAAACTTTGAACACCGTG 60.143 41.667 0.00 0.00 0.00 4.94
1729 1973 4.007659 ACTCTGAAAACTTTGAACACCGT 58.992 39.130 0.00 0.00 0.00 4.83
1730 1974 4.142687 ACACTCTGAAAACTTTGAACACCG 60.143 41.667 0.00 0.00 0.00 4.94
1731 1975 5.123979 AGACACTCTGAAAACTTTGAACACC 59.876 40.000 0.00 0.00 0.00 4.16
1732 1976 6.183309 AGACACTCTGAAAACTTTGAACAC 57.817 37.500 0.00 0.00 0.00 3.32
1739 1989 5.864474 CACGCTATAGACACTCTGAAAACTT 59.136 40.000 3.21 0.00 0.00 2.66
1750 2000 1.383120 CGTACGCACGCTATAGACAC 58.617 55.000 0.52 0.00 42.05 3.67
1929 2183 4.421479 CGGTGCGCGAGTTCCTCT 62.421 66.667 12.10 0.00 0.00 3.69
1930 2184 4.415332 TCGGTGCGCGAGTTCCTC 62.415 66.667 12.10 0.00 0.00 3.71
1990 2244 1.219213 TGAAGGCCTTCCCCTCAAAAA 59.781 47.619 36.75 16.48 38.77 1.94
1991 2245 0.856982 TGAAGGCCTTCCCCTCAAAA 59.143 50.000 36.75 17.19 38.77 2.44
1992 2246 1.084018 ATGAAGGCCTTCCCCTCAAA 58.916 50.000 36.75 20.45 38.77 2.69
1993 2247 0.332632 CATGAAGGCCTTCCCCTCAA 59.667 55.000 36.75 21.14 38.77 3.02
1994 2248 1.574526 CCATGAAGGCCTTCCCCTCA 61.575 60.000 36.75 22.94 38.77 3.86
1995 2249 1.228510 CCATGAAGGCCTTCCCCTC 59.771 63.158 36.75 17.95 38.77 4.30
1996 2250 3.431658 CCATGAAGGCCTTCCCCT 58.568 61.111 36.75 21.61 38.77 4.79
2005 2259 5.357878 TGAGTTAATAAAGCAGCCATGAAGG 59.642 40.000 0.00 0.00 41.84 3.46
2006 2260 6.441093 TGAGTTAATAAAGCAGCCATGAAG 57.559 37.500 0.00 0.00 0.00 3.02
2007 2261 8.518430 TTATGAGTTAATAAAGCAGCCATGAA 57.482 30.769 0.00 0.00 0.00 2.57
2008 2262 8.696043 ATTATGAGTTAATAAAGCAGCCATGA 57.304 30.769 0.00 0.00 0.00 3.07
2027 2281 9.273016 GCCTTAGCAGATGTAAGTTTATTATGA 57.727 33.333 0.00 0.00 39.53 2.15
2028 2282 9.056005 TGCCTTAGCAGATGTAAGTTTATTATG 57.944 33.333 0.00 0.00 46.52 1.90
2046 2300 7.148255 CCCCTTTTTAATTTTGAATGCCTTAGC 60.148 37.037 0.00 0.00 40.48 3.09
2047 2301 7.336679 CCCCCTTTTTAATTTTGAATGCCTTAG 59.663 37.037 0.00 0.00 0.00 2.18
2048 2302 7.017651 TCCCCCTTTTTAATTTTGAATGCCTTA 59.982 33.333 0.00 0.00 0.00 2.69
2049 2303 6.009589 CCCCCTTTTTAATTTTGAATGCCTT 58.990 36.000 0.00 0.00 0.00 4.35
2050 2304 5.311913 TCCCCCTTTTTAATTTTGAATGCCT 59.688 36.000 0.00 0.00 0.00 4.75
2051 2305 5.565509 TCCCCCTTTTTAATTTTGAATGCC 58.434 37.500 0.00 0.00 0.00 4.40
2052 2306 6.237901 ACTCCCCCTTTTTAATTTTGAATGC 58.762 36.000 0.00 0.00 0.00 3.56
2053 2307 9.599866 GATACTCCCCCTTTTTAATTTTGAATG 57.400 33.333 0.00 0.00 0.00 2.67
2054 2308 8.768397 GGATACTCCCCCTTTTTAATTTTGAAT 58.232 33.333 0.00 0.00 0.00 2.57
2055 2309 7.093684 CGGATACTCCCCCTTTTTAATTTTGAA 60.094 37.037 0.00 0.00 31.13 2.69
2056 2310 6.378848 CGGATACTCCCCCTTTTTAATTTTGA 59.621 38.462 0.00 0.00 31.13 2.69
2057 2311 6.378848 TCGGATACTCCCCCTTTTTAATTTTG 59.621 38.462 0.00 0.00 31.13 2.44
2058 2312 6.379133 GTCGGATACTCCCCCTTTTTAATTTT 59.621 38.462 0.00 0.00 31.13 1.82
2059 2313 5.889853 GTCGGATACTCCCCCTTTTTAATTT 59.110 40.000 0.00 0.00 31.13 1.82
2060 2314 5.443283 GTCGGATACTCCCCCTTTTTAATT 58.557 41.667 0.00 0.00 31.13 1.40
2061 2315 4.141321 GGTCGGATACTCCCCCTTTTTAAT 60.141 45.833 0.00 0.00 31.13 1.40
2062 2316 3.200605 GGTCGGATACTCCCCCTTTTTAA 59.799 47.826 0.00 0.00 31.13 1.52
2063 2317 2.773661 GGTCGGATACTCCCCCTTTTTA 59.226 50.000 0.00 0.00 31.13 1.52
2064 2318 1.562942 GGTCGGATACTCCCCCTTTTT 59.437 52.381 0.00 0.00 31.13 1.94
2065 2319 1.210538 GGTCGGATACTCCCCCTTTT 58.789 55.000 0.00 0.00 31.13 2.27
2066 2320 0.043637 TGGTCGGATACTCCCCCTTT 59.956 55.000 0.00 0.00 31.13 3.11
2067 2321 0.690077 GTGGTCGGATACTCCCCCTT 60.690 60.000 0.00 0.00 31.13 3.95
2068 2322 1.075450 GTGGTCGGATACTCCCCCT 60.075 63.158 0.00 0.00 31.13 4.79
2069 2323 2.496291 CGTGGTCGGATACTCCCCC 61.496 68.421 0.00 0.00 31.13 5.40
2070 2324 3.126528 CGTGGTCGGATACTCCCC 58.873 66.667 0.00 0.00 31.13 4.81
2071 2325 2.416260 GCGTGGTCGGATACTCCC 59.584 66.667 0.00 0.00 37.56 4.30
2072 2326 2.416260 GGCGTGGTCGGATACTCC 59.584 66.667 0.00 0.00 37.56 3.85
2073 2327 2.025727 CGGCGTGGTCGGATACTC 59.974 66.667 0.00 0.00 37.56 2.59
2074 2328 2.753043 ACGGCGTGGTCGGATACT 60.753 61.111 13.76 0.00 33.75 2.12
2075 2329 2.278401 GACGGCGTGGTCGGATAC 60.278 66.667 21.19 0.00 33.75 2.24
2083 2337 3.359515 TAATCCACCGACGGCGTGG 62.360 63.158 21.19 21.62 38.89 4.94
2084 2338 2.162754 GTAATCCACCGACGGCGTG 61.163 63.158 21.19 6.53 35.23 5.34
2085 2339 2.182537 GTAATCCACCGACGGCGT 59.817 61.111 14.65 14.65 35.23 5.68
2086 2340 2.584143 GGTAATCCACCGACGGCG 60.584 66.667 15.39 1.94 37.63 6.46
2094 2348 1.685180 GCTTTGGGAGGGGTAATCCAC 60.685 57.143 0.00 0.00 38.70 4.02
2095 2349 0.629058 GCTTTGGGAGGGGTAATCCA 59.371 55.000 0.00 0.00 38.70 3.41
2096 2350 0.927029 AGCTTTGGGAGGGGTAATCC 59.073 55.000 0.00 0.00 35.99 3.01
2097 2351 2.487445 GCTAGCTTTGGGAGGGGTAATC 60.487 54.545 7.70 0.00 0.00 1.75
2098 2352 1.495148 GCTAGCTTTGGGAGGGGTAAT 59.505 52.381 7.70 0.00 0.00 1.89
2099 2353 0.916809 GCTAGCTTTGGGAGGGGTAA 59.083 55.000 7.70 0.00 0.00 2.85
2100 2354 0.044244 AGCTAGCTTTGGGAGGGGTA 59.956 55.000 12.68 0.00 0.00 3.69
2101 2355 0.044244 TAGCTAGCTTTGGGAGGGGT 59.956 55.000 24.88 0.00 0.00 4.95
2102 2356 0.761802 CTAGCTAGCTTTGGGAGGGG 59.238 60.000 24.88 0.00 0.00 4.79
2103 2357 0.107643 GCTAGCTAGCTTTGGGAGGG 59.892 60.000 33.71 1.21 45.62 4.30
2104 2358 3.696306 GCTAGCTAGCTTTGGGAGG 57.304 57.895 33.71 6.02 45.62 4.30
2122 2376 2.349590 TCGAACATGGTTGCTCATGAG 58.650 47.619 18.84 18.84 45.30 2.90
2123 2377 2.470983 TCGAACATGGTTGCTCATGA 57.529 45.000 17.53 0.00 45.30 3.07
2124 2378 8.840726 TAGAGGATCGAACATGGTTGCTCATG 62.841 46.154 4.29 11.68 44.56 3.07
2125 2379 2.092753 AGGATCGAACATGGTTGCTCAT 60.093 45.455 4.29 0.00 0.00 2.90
2126 2380 1.278985 AGGATCGAACATGGTTGCTCA 59.721 47.619 4.29 0.00 0.00 4.26
2127 2381 1.936547 GAGGATCGAACATGGTTGCTC 59.063 52.381 0.00 0.00 0.00 4.26
2128 2382 1.556911 AGAGGATCGAACATGGTTGCT 59.443 47.619 0.00 0.00 42.67 3.91
2129 2383 2.029838 AGAGGATCGAACATGGTTGC 57.970 50.000 0.00 0.00 42.67 4.17
2130 2384 4.392921 AGTAGAGGATCGAACATGGTTG 57.607 45.455 0.00 0.00 42.67 3.77
2131 2385 4.954202 TGTAGTAGAGGATCGAACATGGTT 59.046 41.667 0.00 0.00 42.67 3.67
2132 2386 4.533815 TGTAGTAGAGGATCGAACATGGT 58.466 43.478 0.00 0.00 42.67 3.55
2133 2387 5.515797 TTGTAGTAGAGGATCGAACATGG 57.484 43.478 0.00 0.00 42.67 3.66
2134 2388 6.507900 ACATTGTAGTAGAGGATCGAACATG 58.492 40.000 0.00 0.00 42.67 3.21
2135 2389 6.716934 ACATTGTAGTAGAGGATCGAACAT 57.283 37.500 0.00 0.00 42.67 2.71
2136 2390 6.525578 AACATTGTAGTAGAGGATCGAACA 57.474 37.500 0.00 0.00 42.67 3.18
2137 2391 5.681982 CGAACATTGTAGTAGAGGATCGAAC 59.318 44.000 0.00 0.00 42.67 3.95
2138 2392 5.587443 TCGAACATTGTAGTAGAGGATCGAA 59.413 40.000 0.00 0.00 42.67 3.71
2139 2393 5.121105 TCGAACATTGTAGTAGAGGATCGA 58.879 41.667 0.00 0.00 42.67 3.59
2140 2394 5.419760 TCGAACATTGTAGTAGAGGATCG 57.580 43.478 0.00 0.00 42.67 3.69
2141 2395 9.347934 CATTATCGAACATTGTAGTAGAGGATC 57.652 37.037 0.00 0.00 0.00 3.36
2142 2396 9.078990 TCATTATCGAACATTGTAGTAGAGGAT 57.921 33.333 0.00 0.00 0.00 3.24
2143 2397 8.350722 GTCATTATCGAACATTGTAGTAGAGGA 58.649 37.037 0.00 0.00 0.00 3.71
2144 2398 7.595502 GGTCATTATCGAACATTGTAGTAGAGG 59.404 40.741 0.00 0.00 0.00 3.69
2145 2399 8.353684 AGGTCATTATCGAACATTGTAGTAGAG 58.646 37.037 0.00 0.00 0.00 2.43
2146 2400 8.234136 AGGTCATTATCGAACATTGTAGTAGA 57.766 34.615 0.00 0.00 0.00 2.59
2147 2401 9.395707 GTAGGTCATTATCGAACATTGTAGTAG 57.604 37.037 0.00 0.00 0.00 2.57
2148 2402 9.128404 AGTAGGTCATTATCGAACATTGTAGTA 57.872 33.333 0.00 0.00 0.00 1.82
2149 2403 7.921214 CAGTAGGTCATTATCGAACATTGTAGT 59.079 37.037 0.00 0.00 0.00 2.73
2150 2404 8.135529 TCAGTAGGTCATTATCGAACATTGTAG 58.864 37.037 0.00 0.00 0.00 2.74
2151 2405 8.002984 TCAGTAGGTCATTATCGAACATTGTA 57.997 34.615 0.00 0.00 0.00 2.41
2152 2406 6.873997 TCAGTAGGTCATTATCGAACATTGT 58.126 36.000 0.00 0.00 0.00 2.71
2153 2407 7.770801 TTCAGTAGGTCATTATCGAACATTG 57.229 36.000 0.00 0.00 0.00 2.82
2154 2408 8.964476 ATTTCAGTAGGTCATTATCGAACATT 57.036 30.769 0.00 0.00 0.00 2.71
2155 2409 8.424918 AGATTTCAGTAGGTCATTATCGAACAT 58.575 33.333 0.00 0.00 0.00 2.71
2156 2410 7.782049 AGATTTCAGTAGGTCATTATCGAACA 58.218 34.615 0.00 0.00 0.00 3.18
2157 2411 8.649973 AAGATTTCAGTAGGTCATTATCGAAC 57.350 34.615 0.00 0.00 0.00 3.95
2172 2426 9.005777 TGCCGTAATTTACTTAAAGATTTCAGT 57.994 29.630 5.11 0.00 0.00 3.41
2173 2427 9.834628 TTGCCGTAATTTACTTAAAGATTTCAG 57.165 29.630 5.11 0.00 0.00 3.02
2176 2430 9.797556 GGATTGCCGTAATTTACTTAAAGATTT 57.202 29.630 5.11 0.00 0.00 2.17
2177 2431 9.185680 AGGATTGCCGTAATTTACTTAAAGATT 57.814 29.630 5.11 0.00 39.96 2.40
2178 2432 8.747538 AGGATTGCCGTAATTTACTTAAAGAT 57.252 30.769 5.11 0.00 39.96 2.40
2179 2433 7.281549 GGAGGATTGCCGTAATTTACTTAAAGA 59.718 37.037 5.11 0.00 39.96 2.52
2180 2434 7.066525 TGGAGGATTGCCGTAATTTACTTAAAG 59.933 37.037 5.11 0.00 39.96 1.85
2181 2435 6.885376 TGGAGGATTGCCGTAATTTACTTAAA 59.115 34.615 5.11 0.00 39.96 1.52
2182 2436 6.416415 TGGAGGATTGCCGTAATTTACTTAA 58.584 36.000 5.11 0.00 39.96 1.85
2183 2437 5.991861 TGGAGGATTGCCGTAATTTACTTA 58.008 37.500 5.11 0.00 39.96 2.24
2184 2438 4.850680 TGGAGGATTGCCGTAATTTACTT 58.149 39.130 5.11 0.00 39.96 2.24
2185 2439 4.163458 TCTGGAGGATTGCCGTAATTTACT 59.837 41.667 5.11 0.00 39.96 2.24
2186 2440 4.448210 TCTGGAGGATTGCCGTAATTTAC 58.552 43.478 0.00 0.00 39.96 2.01
2187 2441 4.764050 TCTGGAGGATTGCCGTAATTTA 57.236 40.909 0.00 0.00 39.96 1.40
2188 2442 3.644966 TCTGGAGGATTGCCGTAATTT 57.355 42.857 0.00 0.00 39.96 1.82
2189 2443 3.644966 TTCTGGAGGATTGCCGTAATT 57.355 42.857 0.00 0.00 39.96 1.40
2190 2444 3.864789 ATTCTGGAGGATTGCCGTAAT 57.135 42.857 0.00 0.00 39.96 1.89
2191 2445 3.278574 CAATTCTGGAGGATTGCCGTAA 58.721 45.455 0.00 0.00 39.96 3.18
2192 2446 2.421388 CCAATTCTGGAGGATTGCCGTA 60.421 50.000 2.46 0.00 46.92 4.02
2193 2447 1.683011 CCAATTCTGGAGGATTGCCGT 60.683 52.381 2.46 0.00 46.92 5.68
2194 2448 1.027357 CCAATTCTGGAGGATTGCCG 58.973 55.000 2.46 0.00 46.92 5.69
2195 2449 0.749049 GCCAATTCTGGAGGATTGCC 59.251 55.000 2.46 0.00 46.92 4.52
2196 2450 0.383231 CGCCAATTCTGGAGGATTGC 59.617 55.000 2.46 0.00 46.92 3.56
2197 2451 0.383231 GCGCCAATTCTGGAGGATTG 59.617 55.000 0.00 1.10 46.92 2.67
2198 2452 0.034186 TGCGCCAATTCTGGAGGATT 60.034 50.000 4.18 0.00 46.92 3.01
2199 2453 0.465097 CTGCGCCAATTCTGGAGGAT 60.465 55.000 4.18 0.00 46.92 3.24
2200 2454 1.078214 CTGCGCCAATTCTGGAGGA 60.078 57.895 4.18 0.00 46.92 3.71
2201 2455 2.768492 GCTGCGCCAATTCTGGAGG 61.768 63.158 4.18 0.00 46.92 4.30
2202 2456 2.796651 GCTGCGCCAATTCTGGAG 59.203 61.111 4.18 0.00 46.92 3.86
2213 2467 2.699768 TATGCTTTGGTGGCTGCGC 61.700 57.895 0.00 0.00 0.00 6.09
2214 2468 1.137404 GTATGCTTTGGTGGCTGCG 59.863 57.895 0.00 0.00 0.00 5.18
2215 2469 1.512694 GGTATGCTTTGGTGGCTGC 59.487 57.895 0.00 0.00 0.00 5.25
2216 2470 0.323725 AGGGTATGCTTTGGTGGCTG 60.324 55.000 0.00 0.00 0.00 4.85
2217 2471 0.409484 AAGGGTATGCTTTGGTGGCT 59.591 50.000 0.00 0.00 0.00 4.75
2218 2472 0.817654 GAAGGGTATGCTTTGGTGGC 59.182 55.000 0.00 0.00 0.00 5.01
2219 2473 2.214376 TGAAGGGTATGCTTTGGTGG 57.786 50.000 0.00 0.00 0.00 4.61
2220 2474 3.763360 TGAATGAAGGGTATGCTTTGGTG 59.237 43.478 0.00 0.00 0.00 4.17
2221 2475 4.019174 CTGAATGAAGGGTATGCTTTGGT 58.981 43.478 0.00 0.00 0.00 3.67
2222 2476 3.181483 GCTGAATGAAGGGTATGCTTTGG 60.181 47.826 0.00 0.00 0.00 3.28
2223 2477 3.181483 GGCTGAATGAAGGGTATGCTTTG 60.181 47.826 0.00 0.00 0.00 2.77
2224 2478 3.026694 GGCTGAATGAAGGGTATGCTTT 58.973 45.455 0.00 0.00 0.00 3.51
2225 2479 2.243221 AGGCTGAATGAAGGGTATGCTT 59.757 45.455 0.00 0.00 0.00 3.91
2226 2480 1.849039 AGGCTGAATGAAGGGTATGCT 59.151 47.619 0.00 0.00 0.00 3.79
2227 2481 2.225467 GAGGCTGAATGAAGGGTATGC 58.775 52.381 0.00 0.00 0.00 3.14
2228 2482 3.565764 TGAGGCTGAATGAAGGGTATG 57.434 47.619 0.00 0.00 0.00 2.39
2229 2483 4.467769 CATTGAGGCTGAATGAAGGGTAT 58.532 43.478 20.22 0.00 33.36 2.73
2230 2484 3.889815 CATTGAGGCTGAATGAAGGGTA 58.110 45.455 20.22 0.00 33.36 3.69
2231 2485 2.731572 CATTGAGGCTGAATGAAGGGT 58.268 47.619 20.22 0.00 33.36 4.34
2232 2486 1.407979 GCATTGAGGCTGAATGAAGGG 59.592 52.381 27.45 3.92 33.36 3.95
2233 2487 2.097036 TGCATTGAGGCTGAATGAAGG 58.903 47.619 27.45 4.28 33.36 3.46
2234 2488 3.243434 GGATGCATTGAGGCTGAATGAAG 60.243 47.826 27.45 4.63 33.36 3.02
2235 2489 2.691526 GGATGCATTGAGGCTGAATGAA 59.308 45.455 27.45 19.48 33.36 2.57
2236 2490 2.304092 GGATGCATTGAGGCTGAATGA 58.696 47.619 27.45 14.23 33.36 2.57
2237 2491 2.028876 TGGATGCATTGAGGCTGAATG 58.971 47.619 20.50 20.50 34.47 2.67
2238 2492 2.029623 GTGGATGCATTGAGGCTGAAT 58.970 47.619 0.00 0.00 34.04 2.57
2239 2493 1.466856 GTGGATGCATTGAGGCTGAA 58.533 50.000 0.00 0.00 34.04 3.02
2240 2494 0.745486 CGTGGATGCATTGAGGCTGA 60.745 55.000 0.00 0.00 34.04 4.26
2241 2495 0.745486 TCGTGGATGCATTGAGGCTG 60.745 55.000 0.00 0.00 34.04 4.85
2242 2496 0.745845 GTCGTGGATGCATTGAGGCT 60.746 55.000 0.00 0.00 34.04 4.58
2243 2497 1.723870 GTCGTGGATGCATTGAGGC 59.276 57.895 0.00 0.00 0.00 4.70
2244 2498 0.460109 TCGTCGTGGATGCATTGAGG 60.460 55.000 0.00 3.33 0.00 3.86
2245 2499 1.524355 GATCGTCGTGGATGCATTGAG 59.476 52.381 0.00 0.00 0.00 3.02
2246 2500 1.134848 TGATCGTCGTGGATGCATTGA 60.135 47.619 0.00 0.00 0.00 2.57
2247 2501 1.289276 TGATCGTCGTGGATGCATTG 58.711 50.000 0.00 0.00 0.00 2.82
2248 2502 1.935873 CTTGATCGTCGTGGATGCATT 59.064 47.619 0.00 0.00 0.00 3.56
2249 2503 1.136891 TCTTGATCGTCGTGGATGCAT 59.863 47.619 0.00 0.00 0.00 3.96
2250 2504 0.530288 TCTTGATCGTCGTGGATGCA 59.470 50.000 0.00 0.00 0.00 3.96
2251 2505 1.858091 ATCTTGATCGTCGTGGATGC 58.142 50.000 0.00 0.00 0.00 3.91
2252 2506 4.798574 TGATATCTTGATCGTCGTGGATG 58.201 43.478 3.98 0.00 0.00 3.51
2253 2507 4.762251 TCTGATATCTTGATCGTCGTGGAT 59.238 41.667 3.98 0.00 0.00 3.41
2254 2508 4.134563 TCTGATATCTTGATCGTCGTGGA 58.865 43.478 3.98 0.00 0.00 4.02
2255 2509 4.489679 TCTGATATCTTGATCGTCGTGG 57.510 45.455 3.98 0.00 0.00 4.94
2256 2510 6.145535 TCAATCTGATATCTTGATCGTCGTG 58.854 40.000 3.98 3.73 0.00 4.35
2257 2511 6.319141 TCAATCTGATATCTTGATCGTCGT 57.681 37.500 3.98 0.00 0.00 4.34
2258 2512 7.540055 TGATTCAATCTGATATCTTGATCGTCG 59.460 37.037 3.98 0.00 0.00 5.12
2259 2513 8.646356 GTGATTCAATCTGATATCTTGATCGTC 58.354 37.037 3.98 5.82 0.00 4.20
2260 2514 8.146412 TGTGATTCAATCTGATATCTTGATCGT 58.854 33.333 3.98 0.00 0.00 3.73
2261 2515 8.530269 TGTGATTCAATCTGATATCTTGATCG 57.470 34.615 3.98 0.00 0.00 3.69
2264 2518 8.565416 GCATTGTGATTCAATCTGATATCTTGA 58.435 33.333 3.98 3.18 43.93 3.02
2265 2519 8.568794 AGCATTGTGATTCAATCTGATATCTTG 58.431 33.333 3.98 0.70 43.93 3.02
2266 2520 8.693120 AGCATTGTGATTCAATCTGATATCTT 57.307 30.769 3.98 0.00 43.93 2.40
2267 2521 9.961264 ATAGCATTGTGATTCAATCTGATATCT 57.039 29.630 3.98 0.00 43.93 1.98
2269 2523 8.880750 CGATAGCATTGTGATTCAATCTGATAT 58.119 33.333 0.00 0.00 43.93 1.63
2270 2524 8.248117 CGATAGCATTGTGATTCAATCTGATA 57.752 34.615 0.00 0.00 43.93 2.15
2271 2525 7.130303 CGATAGCATTGTGATTCAATCTGAT 57.870 36.000 0.00 0.00 43.93 2.90
2272 2526 6.535274 CGATAGCATTGTGATTCAATCTGA 57.465 37.500 0.00 0.00 43.93 3.27
2290 2544 1.819632 GTGGCCTTGGGTGCGATAG 60.820 63.158 3.32 0.00 0.00 2.08
2291 2545 2.270850 GTGGCCTTGGGTGCGATA 59.729 61.111 3.32 0.00 0.00 2.92
2294 2548 3.969250 ATACGTGGCCTTGGGTGCG 62.969 63.158 3.32 0.00 0.00 5.34
2295 2549 2.045340 ATACGTGGCCTTGGGTGC 60.045 61.111 3.32 0.00 0.00 5.01
2296 2550 0.322098 TTCATACGTGGCCTTGGGTG 60.322 55.000 3.32 0.00 0.00 4.61
2297 2551 0.322187 GTTCATACGTGGCCTTGGGT 60.322 55.000 3.32 0.00 0.00 4.51
2298 2552 0.322098 TGTTCATACGTGGCCTTGGG 60.322 55.000 3.32 0.00 0.00 4.12
2299 2553 1.401552 CATGTTCATACGTGGCCTTGG 59.598 52.381 3.32 0.00 37.58 3.61
2300 2554 2.355197 TCATGTTCATACGTGGCCTTG 58.645 47.619 3.32 0.00 40.87 3.61
2301 2555 2.779755 TCATGTTCATACGTGGCCTT 57.220 45.000 3.32 0.00 40.87 4.35
2302 2556 3.206150 GAATCATGTTCATACGTGGCCT 58.794 45.455 3.32 0.00 40.87 5.19
2303 2557 2.290641 GGAATCATGTTCATACGTGGCC 59.709 50.000 0.00 0.00 40.87 5.36
2304 2558 2.290641 GGGAATCATGTTCATACGTGGC 59.709 50.000 0.00 0.00 40.87 5.01
2305 2559 3.561310 CAGGGAATCATGTTCATACGTGG 59.439 47.826 0.00 0.00 40.87 4.94
2306 2560 3.561310 CCAGGGAATCATGTTCATACGTG 59.439 47.826 0.00 0.00 41.69 4.49
2307 2561 3.199946 ACCAGGGAATCATGTTCATACGT 59.800 43.478 0.00 0.00 0.00 3.57
2308 2562 3.561310 CACCAGGGAATCATGTTCATACG 59.439 47.826 9.31 0.00 0.00 3.06
2309 2563 3.316308 GCACCAGGGAATCATGTTCATAC 59.684 47.826 9.31 1.71 0.00 2.39
2310 2564 3.053768 TGCACCAGGGAATCATGTTCATA 60.054 43.478 9.31 0.00 0.00 2.15
2311 2565 2.291735 TGCACCAGGGAATCATGTTCAT 60.292 45.455 9.31 0.00 0.00 2.57
2312 2566 1.075212 TGCACCAGGGAATCATGTTCA 59.925 47.619 9.31 0.00 0.00 3.18
2313 2567 1.838112 TGCACCAGGGAATCATGTTC 58.162 50.000 0.00 0.00 0.00 3.18
2314 2568 2.104967 CATGCACCAGGGAATCATGTT 58.895 47.619 0.00 0.00 32.26 2.71
2315 2569 1.687054 CCATGCACCAGGGAATCATGT 60.687 52.381 0.00 0.00 37.52 3.21
2316 2570 1.037493 CCATGCACCAGGGAATCATG 58.963 55.000 0.00 2.77 37.52 3.07
2317 2571 0.757935 GCCATGCACCAGGGAATCAT 60.758 55.000 0.00 0.00 37.52 2.45
2318 2572 1.380246 GCCATGCACCAGGGAATCA 60.380 57.895 0.00 0.00 37.52 2.57
2319 2573 2.129785 GGCCATGCACCAGGGAATC 61.130 63.158 0.00 0.00 37.52 2.52
2320 2574 2.042639 GGCCATGCACCAGGGAAT 60.043 61.111 0.00 0.00 37.52 3.01
2321 2575 3.267233 AGGCCATGCACCAGGGAA 61.267 61.111 5.01 0.00 37.52 3.97
2322 2576 3.731728 GAGGCCATGCACCAGGGA 61.732 66.667 5.01 0.00 37.52 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.