Multiple sequence alignment - TraesCS3B01G488500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G488500 chr3B 100.000 3473 0 0 1 3473 734438057 734434585 0.000000e+00 6414.0
1 TraesCS3B01G488500 chr3B 92.135 267 19 2 2 268 826240959 826241223 3.270000e-100 375.0
2 TraesCS3B01G488500 chr3B 91.386 267 21 2 2 268 826257064 826257328 7.080000e-97 364.0
3 TraesCS3B01G488500 chr3B 88.710 186 12 3 2256 2433 734434997 734434813 5.840000e-53 219.0
4 TraesCS3B01G488500 chr3B 88.710 186 12 3 3061 3245 734435802 734435625 5.840000e-53 219.0
5 TraesCS3B01G488500 chr3B 92.727 110 7 1 640 749 734429560 734429452 1.290000e-34 158.0
6 TraesCS3B01G488500 chr3D 90.161 2490 171 31 292 2731 553234140 553231675 0.000000e+00 3173.0
7 TraesCS3B01G488500 chr3D 91.235 251 19 3 12 261 138897617 138897369 4.290000e-89 339.0
8 TraesCS3B01G488500 chr3D 88.172 186 13 3 3061 3245 553232155 553231978 2.720000e-51 213.0
9 TraesCS3B01G488500 chr3D 89.916 119 11 1 3352 3470 39335011 39334894 6.000000e-33 152.0
10 TraesCS3B01G488500 chr3D 91.818 110 8 1 640 749 553215454 553215346 6.000000e-33 152.0
11 TraesCS3B01G488500 chr3A 89.380 1855 175 8 893 2731 689502208 689500360 0.000000e+00 2314.0
12 TraesCS3B01G488500 chr3A 90.521 633 51 5 739 1369 689506041 689505416 0.000000e+00 828.0
13 TraesCS3B01G488500 chr3A 85.398 767 89 9 1984 2731 689505190 689504428 0.000000e+00 774.0
14 TraesCS3B01G488500 chr3A 88.462 494 20 10 409 901 689504070 689503613 2.340000e-156 562.0
15 TraesCS3B01G488500 chr3A 92.308 234 18 0 2 235 7574319 7574552 2.000000e-87 333.0
16 TraesCS3B01G488500 chr3A 90.090 222 22 0 1907 2128 689505407 689505186 4.390000e-74 289.0
17 TraesCS3B01G488500 chr3A 92.727 110 7 1 640 749 689496960 689496852 1.290000e-34 158.0
18 TraesCS3B01G488500 chr3A 91.089 101 7 2 640 740 689506266 689506168 6.050000e-28 135.0
19 TraesCS3B01G488500 chr6D 82.984 1575 246 16 904 2460 429010083 429011653 0.000000e+00 1404.0
20 TraesCS3B01G488500 chr6D 91.440 257 21 1 2 258 20340955 20341210 5.520000e-93 351.0
21 TraesCS3B01G488500 chr6A 81.607 1718 272 27 768 2460 574241829 574243527 0.000000e+00 1382.0
22 TraesCS3B01G488500 chr7D 75.424 1062 226 27 1336 2381 166514039 166512997 1.870000e-132 483.0
23 TraesCS3B01G488500 chr7D 87.342 79 8 2 2494 2572 168489748 168489672 4.770000e-14 89.8
24 TraesCS3B01G488500 chr7A 74.600 1063 233 29 1336 2381 167904411 167903369 1.910000e-117 433.0
25 TraesCS3B01G488500 chr7B 74.458 1061 238 25 1336 2381 130747053 130746011 8.910000e-116 427.0
26 TraesCS3B01G488500 chr7B 100.000 29 0 0 1238 1266 394403867 394403895 2.000000e-03 54.7
27 TraesCS3B01G488500 chr2D 92.664 259 19 0 2 260 155469566 155469824 1.180000e-99 374.0
28 TraesCS3B01G488500 chr2D 92.218 257 19 1 2 258 619051486 619051741 2.550000e-96 363.0
29 TraesCS3B01G488500 chr5B 90.672 268 23 2 2 268 394577003 394577269 4.260000e-94 355.0
30 TraesCS3B01G488500 chr5B 90.833 120 11 0 3343 3462 57017599 57017480 9.980000e-36 161.0
31 TraesCS3B01G488500 chr1D 91.440 257 21 1 2 258 427323990 427323735 5.520000e-93 351.0
32 TraesCS3B01G488500 chr2B 87.234 141 17 1 3322 3462 412993874 412994013 3.590000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G488500 chr3B 734434585 734438057 3472 True 2284.000000 6414 92.473333 1 3473 3 chr3B.!!$R2 3472
1 TraesCS3B01G488500 chr3D 553231675 553234140 2465 True 1693.000000 3173 89.166500 292 3245 2 chr3D.!!$R4 2953
2 TraesCS3B01G488500 chr3A 689496852 689506266 9414 True 722.857143 2314 89.666714 409 2731 7 chr3A.!!$R1 2322
3 TraesCS3B01G488500 chr6D 429010083 429011653 1570 False 1404.000000 1404 82.984000 904 2460 1 chr6D.!!$F2 1556
4 TraesCS3B01G488500 chr6A 574241829 574243527 1698 False 1382.000000 1382 81.607000 768 2460 1 chr6A.!!$F1 1692
5 TraesCS3B01G488500 chr7D 166512997 166514039 1042 True 483.000000 483 75.424000 1336 2381 1 chr7D.!!$R1 1045
6 TraesCS3B01G488500 chr7A 167903369 167904411 1042 True 433.000000 433 74.600000 1336 2381 1 chr7A.!!$R1 1045
7 TraesCS3B01G488500 chr7B 130746011 130747053 1042 True 427.000000 427 74.458000 1336 2381 1 chr7B.!!$R1 1045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 383 0.109597 GCCAGGCAACAGTTCGAATG 60.110 55.0 6.55 3.61 41.41 2.67 F
2074 5316 0.250684 TGCAATGTCTTTCCTGGCGA 60.251 50.0 0.00 0.00 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2118 5363 0.036732 AATGCTCAAAGGCCGTGAGA 59.963 50.0 32.09 21.13 44.44 3.27 R
3113 6885 0.039437 ATCCATACGCGATCACCGTC 60.039 55.0 15.93 0.00 39.88 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.116463 ACTGACGTCGCTGTCACA 58.884 55.556 11.62 0.00 43.62 3.58
19 20 1.008424 CTGACGTCGCTGTCACACT 60.008 57.895 11.62 0.00 43.62 3.55
20 21 0.999228 CTGACGTCGCTGTCACACTC 60.999 60.000 11.62 0.00 43.62 3.51
21 22 2.051256 ACGTCGCTGTCACACTCG 60.051 61.111 0.00 0.00 0.00 4.18
22 23 3.461982 CGTCGCTGTCACACTCGC 61.462 66.667 0.00 0.00 0.00 5.03
23 24 3.106407 GTCGCTGTCACACTCGCC 61.106 66.667 0.00 0.00 0.00 5.54
24 25 4.700365 TCGCTGTCACACTCGCCG 62.700 66.667 0.00 0.00 0.00 6.46
98 99 4.785453 CCAGGGGAAGACGCAGCC 62.785 72.222 0.00 0.00 33.80 4.85
99 100 4.020617 CAGGGGAAGACGCAGCCA 62.021 66.667 0.00 0.00 33.80 4.75
100 101 4.021925 AGGGGAAGACGCAGCCAC 62.022 66.667 0.00 0.00 33.80 5.01
102 103 4.329545 GGGAAGACGCAGCCACCA 62.330 66.667 0.00 0.00 0.00 4.17
103 104 3.050275 GGAAGACGCAGCCACCAC 61.050 66.667 0.00 0.00 0.00 4.16
104 105 3.414700 GAAGACGCAGCCACCACG 61.415 66.667 0.00 0.00 0.00 4.94
105 106 3.858868 GAAGACGCAGCCACCACGA 62.859 63.158 0.00 0.00 0.00 4.35
106 107 3.865929 AAGACGCAGCCACCACGAG 62.866 63.158 0.00 0.00 0.00 4.18
107 108 4.357947 GACGCAGCCACCACGAGA 62.358 66.667 0.00 0.00 0.00 4.04
108 109 4.363990 ACGCAGCCACCACGAGAG 62.364 66.667 0.00 0.00 0.00 3.20
118 119 2.269241 CACGAGAGGGGGAAAGCC 59.731 66.667 0.00 0.00 0.00 4.35
137 138 4.624364 TGCCGCCGCCATCATAGG 62.624 66.667 0.00 0.00 0.00 2.57
147 148 2.732412 CCATCATAGGCCAGACTACG 57.268 55.000 5.01 0.00 0.00 3.51
148 149 1.273606 CCATCATAGGCCAGACTACGG 59.726 57.143 5.01 0.00 0.00 4.02
149 150 1.273606 CATCATAGGCCAGACTACGGG 59.726 57.143 5.01 0.00 34.56 5.28
154 155 4.814294 GCCAGACTACGGGCGTGG 62.814 72.222 0.00 0.00 45.96 4.94
155 156 4.814294 CCAGACTACGGGCGTGGC 62.814 72.222 0.00 0.00 0.00 5.01
179 180 2.510238 CGGCGGCAAGGAAGAGAG 60.510 66.667 10.53 0.00 0.00 3.20
180 181 2.124942 GGCGGCAAGGAAGAGAGG 60.125 66.667 3.07 0.00 0.00 3.69
181 182 2.660064 GGCGGCAAGGAAGAGAGGA 61.660 63.158 3.07 0.00 0.00 3.71
182 183 1.448717 GCGGCAAGGAAGAGAGGAC 60.449 63.158 0.00 0.00 0.00 3.85
183 184 1.153745 CGGCAAGGAAGAGAGGACG 60.154 63.158 0.00 0.00 0.00 4.79
184 185 1.595993 CGGCAAGGAAGAGAGGACGA 61.596 60.000 0.00 0.00 0.00 4.20
185 186 0.174617 GGCAAGGAAGAGAGGACGAG 59.825 60.000 0.00 0.00 0.00 4.18
186 187 0.174617 GCAAGGAAGAGAGGACGAGG 59.825 60.000 0.00 0.00 0.00 4.63
187 188 0.820871 CAAGGAAGAGAGGACGAGGG 59.179 60.000 0.00 0.00 0.00 4.30
189 190 0.257616 AGGAAGAGAGGACGAGGGAG 59.742 60.000 0.00 0.00 0.00 4.30
190 191 0.753848 GGAAGAGAGGACGAGGGAGG 60.754 65.000 0.00 0.00 0.00 4.30
191 192 0.256464 GAAGAGAGGACGAGGGAGGA 59.744 60.000 0.00 0.00 0.00 3.71
192 193 0.257616 AAGAGAGGACGAGGGAGGAG 59.742 60.000 0.00 0.00 0.00 3.69
193 194 1.152839 GAGAGGACGAGGGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
194 195 2.835895 GAGGACGAGGGAGGAGGC 60.836 72.222 0.00 0.00 0.00 4.70
195 196 4.467107 AGGACGAGGGAGGAGGCC 62.467 72.222 0.00 0.00 0.00 5.19
197 198 2.364448 GACGAGGGAGGAGGCCTT 60.364 66.667 6.77 0.00 31.76 4.35
198 199 1.990614 GACGAGGGAGGAGGCCTTT 60.991 63.158 6.77 0.00 31.76 3.11
199 200 2.245438 GACGAGGGAGGAGGCCTTTG 62.245 65.000 6.77 0.00 31.76 2.77
201 202 2.615288 AGGGAGGAGGCCTTTGGG 60.615 66.667 6.77 0.00 31.76 4.12
238 239 3.834799 CCCCGTGTCGCCTAGGTC 61.835 72.222 11.31 1.66 0.00 3.85
239 240 3.066190 CCCGTGTCGCCTAGGTCA 61.066 66.667 11.31 5.04 0.00 4.02
248 249 4.554363 CCTAGGTCAGGCGACGCG 62.554 72.222 14.61 3.53 43.61 6.01
249 250 4.554363 CTAGGTCAGGCGACGCGG 62.554 72.222 14.61 8.82 43.61 6.46
264 265 4.075793 CGGGGACAGGGAGAGGGA 62.076 72.222 0.00 0.00 0.00 4.20
266 267 2.781406 GGGACAGGGAGAGGGAGT 59.219 66.667 0.00 0.00 0.00 3.85
267 268 1.382009 GGGACAGGGAGAGGGAGTC 60.382 68.421 0.00 0.00 0.00 3.36
268 269 1.388531 GGACAGGGAGAGGGAGTCA 59.611 63.158 0.00 0.00 0.00 3.41
270 271 1.304547 ACAGGGAGAGGGAGTCACG 60.305 63.158 0.00 0.00 0.00 4.35
271 272 1.000771 CAGGGAGAGGGAGTCACGA 60.001 63.158 0.00 0.00 0.00 4.35
272 273 1.034838 CAGGGAGAGGGAGTCACGAG 61.035 65.000 0.00 0.00 0.00 4.18
273 274 1.755008 GGGAGAGGGAGTCACGAGG 60.755 68.421 0.00 0.00 0.00 4.63
274 275 1.755008 GGAGAGGGAGTCACGAGGG 60.755 68.421 0.00 0.00 0.00 4.30
275 276 1.303615 GAGAGGGAGTCACGAGGGA 59.696 63.158 0.00 0.00 0.00 4.20
276 277 0.750182 GAGAGGGAGTCACGAGGGAG 60.750 65.000 0.00 0.00 0.00 4.30
278 279 2.212794 GAGGGAGTCACGAGGGAGGA 62.213 65.000 0.00 0.00 0.00 3.71
279 280 1.305046 GGGAGTCACGAGGGAGGAA 60.305 63.158 0.00 0.00 0.00 3.36
280 281 1.605971 GGGAGTCACGAGGGAGGAAC 61.606 65.000 0.00 0.00 0.00 3.62
281 282 1.507174 GAGTCACGAGGGAGGAACG 59.493 63.158 0.00 0.00 0.00 3.95
282 283 0.959372 GAGTCACGAGGGAGGAACGA 60.959 60.000 0.00 0.00 0.00 3.85
283 284 0.323542 AGTCACGAGGGAGGAACGAT 60.324 55.000 0.00 0.00 0.00 3.73
284 285 1.064906 AGTCACGAGGGAGGAACGATA 60.065 52.381 0.00 0.00 0.00 2.92
285 286 1.955080 GTCACGAGGGAGGAACGATAT 59.045 52.381 0.00 0.00 0.00 1.63
287 288 1.681793 CACGAGGGAGGAACGATATGT 59.318 52.381 0.00 0.00 0.00 2.29
288 289 1.681793 ACGAGGGAGGAACGATATGTG 59.318 52.381 0.00 0.00 0.00 3.21
290 291 2.287668 CGAGGGAGGAACGATATGTGAC 60.288 54.545 0.00 0.00 0.00 3.67
291 292 1.681793 AGGGAGGAACGATATGTGACG 59.318 52.381 0.00 0.00 0.00 4.35
292 293 1.269621 GGGAGGAACGATATGTGACGG 60.270 57.143 0.00 0.00 0.00 4.79
295 296 0.748450 GGAACGATATGTGACGGGGA 59.252 55.000 0.00 0.00 0.00 4.81
374 378 2.647297 GCAGCCAGGCAACAGTTC 59.353 61.111 15.80 0.00 41.41 3.01
379 383 0.109597 GCCAGGCAACAGTTCGAATG 60.110 55.000 6.55 3.61 41.41 2.67
408 412 2.917172 TTTTTGAGTACCGCCCGTC 58.083 52.632 0.00 0.00 0.00 4.79
409 413 0.603439 TTTTTGAGTACCGCCCGTCC 60.603 55.000 0.00 0.00 0.00 4.79
410 414 2.768503 TTTTGAGTACCGCCCGTCCG 62.769 60.000 0.00 0.00 0.00 4.79
442 2231 2.815211 CAGCGTGTCACCCATCCG 60.815 66.667 0.00 0.00 0.00 4.18
444 2233 2.358247 GCGTGTCACCCATCCGTT 60.358 61.111 0.00 0.00 0.00 4.44
503 2292 2.494870 GGTGTCCGAATAGGTAGTGTGT 59.505 50.000 0.00 0.00 41.99 3.72
507 2296 4.039488 TGTCCGAATAGGTAGTGTGTTGTT 59.961 41.667 0.00 0.00 41.99 2.83
551 2341 1.378762 CCCAAAGCGGAAAGGAGGA 59.621 57.895 0.00 0.00 36.56 3.71
609 2400 4.685924 ACTCTTTCAACTGCCAAAACATG 58.314 39.130 0.00 0.00 0.00 3.21
618 2409 9.553064 TTCAACTGCCAAAACATGTTATATTTT 57.447 25.926 12.39 0.00 0.00 1.82
667 2459 1.170290 CCAACCGGACCCAAGTTCAC 61.170 60.000 9.46 0.00 0.00 3.18
683 2475 2.140065 TCACGCTCTTGTGACTCTTG 57.860 50.000 0.00 0.00 43.62 3.02
801 2608 1.674519 GCCTTAATTGGTTTTGGGGCG 60.675 52.381 0.00 0.00 0.00 6.13
818 2625 1.276421 GGCGATCTGGCACTATATGGT 59.724 52.381 6.31 0.00 44.08 3.55
819 2626 2.289694 GGCGATCTGGCACTATATGGTT 60.290 50.000 6.31 0.00 44.08 3.67
820 2627 3.056107 GGCGATCTGGCACTATATGGTTA 60.056 47.826 6.31 0.00 44.08 2.85
879 2686 4.534794 TCGCATAATGCTACAACATGTG 57.465 40.909 0.00 0.00 42.25 3.21
901 2713 8.298729 TGTGCCATATTCCATTTGTACAATTA 57.701 30.769 9.56 0.00 0.00 1.40
932 4157 8.410673 TTGGTAGTTGGTAGCAATAAAATCAA 57.589 30.769 11.06 6.82 42.84 2.57
965 4205 1.564818 AGACCGGTCTCTCCTCACATA 59.435 52.381 31.69 0.00 34.17 2.29
988 4228 3.907788 CACACGCATAGAAACACATGTTG 59.092 43.478 0.00 0.00 38.44 3.33
1034 4276 3.434299 GGAATTTGCAAGCACCTCAAATG 59.566 43.478 0.00 0.00 39.50 2.32
1074 4316 4.851639 AGACAACTTCCTAGCCATGATT 57.148 40.909 0.00 0.00 0.00 2.57
1113 4355 4.198224 ACCGTGGTTGTGGTGGGG 62.198 66.667 0.00 0.00 37.02 4.96
1114 4356 4.198224 CCGTGGTTGTGGTGGGGT 62.198 66.667 0.00 0.00 0.00 4.95
1115 4357 2.904866 CGTGGTTGTGGTGGGGTG 60.905 66.667 0.00 0.00 0.00 4.61
1116 4358 2.520741 GTGGTTGTGGTGGGGTGG 60.521 66.667 0.00 0.00 0.00 4.61
1145 4387 3.920031 CGAGGAGATCGTGGGTCA 58.080 61.111 0.00 0.00 46.62 4.02
1154 4396 2.838748 ATCGTGGGTCAGCTCCGAGA 62.839 60.000 0.00 0.00 0.00 4.04
1194 4436 1.377333 CTTGTTCGGCTTCCTCCCC 60.377 63.158 0.00 0.00 0.00 4.81
1195 4437 2.124507 CTTGTTCGGCTTCCTCCCCA 62.125 60.000 0.00 0.00 0.00 4.96
1203 4445 1.445095 CTTCCTCCCCATCTCTGCG 59.555 63.158 0.00 0.00 0.00 5.18
1207 4449 3.144120 CTCCCCATCTCTGCGGTCG 62.144 68.421 0.00 0.00 0.00 4.79
1305 4547 2.214376 TCCCATTTGCCTCATTCGTT 57.786 45.000 0.00 0.00 0.00 3.85
1334 4576 2.095263 CACGCCAATTACCCACTTTCAG 60.095 50.000 0.00 0.00 0.00 3.02
1372 4614 0.803768 CATGTCACGGCTTCTCGAGG 60.804 60.000 13.56 0.00 0.00 4.63
1798 5040 3.320879 ATGCTGCTGCCGTACTGCT 62.321 57.895 13.47 0.00 43.25 4.24
2037 5279 0.826256 CACCCATCGTCCTCCCGATA 60.826 60.000 0.00 0.00 45.25 2.92
2068 5310 4.571984 AGCTTTTGTTTGCAATGTCTTTCC 59.428 37.500 0.00 0.00 34.18 3.13
2074 5316 0.250684 TGCAATGTCTTTCCTGGCGA 60.251 50.000 0.00 0.00 0.00 5.54
2076 5318 1.401539 GCAATGTCTTTCCTGGCGAAC 60.402 52.381 0.00 0.00 0.00 3.95
2106 5351 3.367292 CCAGCAGGCGTTTCAAATTGTAT 60.367 43.478 0.00 0.00 0.00 2.29
2118 5363 6.739331 TTCAAATTGTATGTCCCCAACTTT 57.261 33.333 0.00 0.00 0.00 2.66
2127 5372 1.971695 CCCCAACTTTCTCACGGCC 60.972 63.158 0.00 0.00 0.00 6.13
2235 5480 2.081526 GTCACGAATGACGCTGCAT 58.918 52.632 0.00 0.00 45.66 3.96
2382 5627 1.594833 GGTGTGGGAGTGCATCGTA 59.405 57.895 0.00 0.00 0.00 3.43
2463 5708 1.836604 GTCCCCAAAAGCAAGGCCA 60.837 57.895 5.01 0.00 0.00 5.36
2465 5710 2.139484 CCCCAAAAGCAAGGCCACA 61.139 57.895 5.01 0.00 0.00 4.17
2466 5711 1.482748 CCCCAAAAGCAAGGCCACAT 61.483 55.000 5.01 0.00 0.00 3.21
2475 5720 3.019564 AGCAAGGCCACATCAATAAGTC 58.980 45.455 5.01 0.00 0.00 3.01
2502 5747 3.904339 AGGCACTGGTAAATCGGATATCT 59.096 43.478 2.05 0.00 37.18 1.98
2503 5748 4.021016 AGGCACTGGTAAATCGGATATCTC 60.021 45.833 2.05 0.00 37.18 2.75
2529 5789 5.486735 TTGAATTCATGCTCCAACCAATT 57.513 34.783 9.40 0.00 0.00 2.32
2531 5791 6.602410 TGAATTCATGCTCCAACCAATTTA 57.398 33.333 3.38 0.00 0.00 1.40
2533 5793 7.267128 TGAATTCATGCTCCAACCAATTTATC 58.733 34.615 3.38 0.00 0.00 1.75
2538 5798 5.815233 TGCTCCAACCAATTTATCCAAAA 57.185 34.783 0.00 0.00 0.00 2.44
2539 5799 5.792741 TGCTCCAACCAATTTATCCAAAAG 58.207 37.500 0.00 0.00 0.00 2.27
2541 5801 5.869344 GCTCCAACCAATTTATCCAAAAGTC 59.131 40.000 0.00 0.00 0.00 3.01
2542 5802 6.353404 TCCAACCAATTTATCCAAAAGTCC 57.647 37.500 0.00 0.00 0.00 3.85
2559 5819 7.308830 CCAAAAGTCCAAACTGATAAAGAGAGG 60.309 40.741 0.00 0.00 35.36 3.69
2561 5821 4.534103 AGTCCAAACTGATAAAGAGAGGCT 59.466 41.667 0.00 0.00 33.32 4.58
2599 5859 7.846644 AACATGTGTGTTGTGAAAAATGATT 57.153 28.000 0.00 0.00 46.43 2.57
2604 5864 8.404889 TGTGTGTTGTGAAAAATGATTACTTG 57.595 30.769 0.00 0.00 0.00 3.16
2605 5865 7.490725 TGTGTGTTGTGAAAAATGATTACTTGG 59.509 33.333 0.00 0.00 0.00 3.61
2623 5883 4.020662 ACTTGGTGGTGTTGTCATTTTTGT 60.021 37.500 0.00 0.00 0.00 2.83
2633 5893 8.233190 GGTGTTGTCATTTTTGTTTCATTTTGA 58.767 29.630 0.00 0.00 0.00 2.69
2634 5894 9.264782 GTGTTGTCATTTTTGTTTCATTTTGAG 57.735 29.630 0.00 0.00 0.00 3.02
2670 5930 2.603560 GCCGAGTGAATACTTTTCTCCG 59.396 50.000 0.00 0.00 37.25 4.63
2690 5950 6.149142 TCTCCGAAAAGTAGTAGAGACACTTC 59.851 42.308 0.00 0.00 31.43 3.01
2694 5954 7.437267 CCGAAAAGTAGTAGAGACACTTCAAAA 59.563 37.037 0.00 0.00 31.43 2.44
2695 5955 8.480853 CGAAAAGTAGTAGAGACACTTCAAAAG 58.519 37.037 0.00 0.00 31.43 2.27
2697 5957 7.598759 AAGTAGTAGAGACACTTCAAAAGGA 57.401 36.000 0.00 0.00 0.00 3.36
2699 5959 4.872664 AGTAGAGACACTTCAAAAGGACG 58.127 43.478 0.00 0.00 0.00 4.79
2721 5981 3.426292 GCTCAAAAGGTAAAGCCATCGTC 60.426 47.826 0.00 0.00 40.61 4.20
2731 5991 5.701290 GGTAAAGCCATCGTCTGCTTATAAT 59.299 40.000 8.11 0.00 46.58 1.28
2732 5992 6.872020 GGTAAAGCCATCGTCTGCTTATAATA 59.128 38.462 8.11 0.00 46.58 0.98
2734 5994 7.801716 AAAGCCATCGTCTGCTTATAATAAA 57.198 32.000 8.11 0.00 46.58 1.40
2735 5995 7.986085 AAGCCATCGTCTGCTTATAATAAAT 57.014 32.000 6.33 0.00 45.51 1.40
2736 5996 7.602517 AGCCATCGTCTGCTTATAATAAATC 57.397 36.000 0.00 0.00 32.94 2.17
2737 5997 7.390027 AGCCATCGTCTGCTTATAATAAATCT 58.610 34.615 0.00 0.00 32.94 2.40
2739 5999 8.596380 GCCATCGTCTGCTTATAATAAATCTAC 58.404 37.037 0.00 0.00 0.00 2.59
2740 6000 9.862371 CCATCGTCTGCTTATAATAAATCTACT 57.138 33.333 0.00 0.00 0.00 2.57
2780 6497 8.361889 GGAAGTCTATATTTAGTCTCCCAACTC 58.638 40.741 0.00 0.00 0.00 3.01
2791 6508 1.276421 CTCCCAACTCATCGAGGTGTT 59.724 52.381 11.34 11.34 45.03 3.32
2792 6509 1.275291 TCCCAACTCATCGAGGTGTTC 59.725 52.381 13.92 0.00 45.03 3.18
2793 6510 1.001974 CCCAACTCATCGAGGTGTTCA 59.998 52.381 13.92 0.00 45.03 3.18
2811 6528 4.821805 TGTTCAGTTTCATCCTCCAACTTC 59.178 41.667 0.00 0.00 0.00 3.01
2816 6533 6.550854 TCAGTTTCATCCTCCAACTTCAAAAT 59.449 34.615 0.00 0.00 0.00 1.82
2821 6538 8.648698 TTCATCCTCCAACTTCAAAATCATAA 57.351 30.769 0.00 0.00 0.00 1.90
2824 6541 8.742777 CATCCTCCAACTTCAAAATCATAAAGA 58.257 33.333 0.00 0.00 0.00 2.52
2847 6564 9.712359 AAGATTGTACGTCAAAAGTTTAGAAAC 57.288 29.630 0.00 0.00 39.62 2.78
2848 6565 8.340443 AGATTGTACGTCAAAAGTTTAGAAACC 58.660 33.333 0.00 0.00 38.33 3.27
2849 6566 6.035070 TGTACGTCAAAAGTTTAGAAACCG 57.965 37.500 0.00 0.60 39.71 4.44
2850 6567 4.541085 ACGTCAAAAGTTTAGAAACCGG 57.459 40.909 0.00 0.00 39.71 5.28
2851 6568 4.190772 ACGTCAAAAGTTTAGAAACCGGA 58.809 39.130 9.46 0.00 39.71 5.14
2852 6569 4.635324 ACGTCAAAAGTTTAGAAACCGGAA 59.365 37.500 9.46 0.00 39.71 4.30
2853 6570 5.123661 ACGTCAAAAGTTTAGAAACCGGAAA 59.876 36.000 9.46 0.00 39.71 3.13
2854 6571 6.183360 ACGTCAAAAGTTTAGAAACCGGAAAT 60.183 34.615 9.46 0.00 39.71 2.17
2855 6572 6.693978 CGTCAAAAGTTTAGAAACCGGAAATT 59.306 34.615 9.46 0.00 39.71 1.82
2856 6573 7.221259 CGTCAAAAGTTTAGAAACCGGAAATTT 59.779 33.333 9.46 0.00 39.71 1.82
2857 6574 8.875803 GTCAAAAGTTTAGAAACCGGAAATTTT 58.124 29.630 9.46 6.03 39.71 1.82
2858 6575 9.438228 TCAAAAGTTTAGAAACCGGAAATTTTT 57.562 25.926 9.46 10.45 39.71 1.94
2879 6596 3.492102 TGTCCTCCCACTTCTTCAAAG 57.508 47.619 0.00 0.00 0.00 2.77
2880 6597 2.777692 TGTCCTCCCACTTCTTCAAAGT 59.222 45.455 0.00 0.00 0.00 2.66
2881 6598 3.971305 TGTCCTCCCACTTCTTCAAAGTA 59.029 43.478 0.00 0.00 0.00 2.24
2882 6599 4.040461 TGTCCTCCCACTTCTTCAAAGTAG 59.960 45.833 0.00 0.00 0.00 2.57
2885 6602 6.023603 TCCTCCCACTTCTTCAAAGTAGTAT 58.976 40.000 2.26 0.00 34.90 2.12
2887 6604 5.488341 TCCCACTTCTTCAAAGTAGTATGC 58.512 41.667 2.26 0.00 34.90 3.14
2899 6616 3.359033 AGTAGTATGCGGAGTGGTTGTA 58.641 45.455 0.00 0.00 0.00 2.41
2901 6618 3.906720 AGTATGCGGAGTGGTTGTAAT 57.093 42.857 0.00 0.00 0.00 1.89
2903 6620 2.779755 ATGCGGAGTGGTTGTAATCA 57.220 45.000 0.00 0.00 0.00 2.57
2905 6622 3.066291 TGCGGAGTGGTTGTAATCATT 57.934 42.857 0.00 0.00 0.00 2.57
2906 6623 3.006940 TGCGGAGTGGTTGTAATCATTC 58.993 45.455 0.00 0.00 0.00 2.67
2907 6624 3.270877 GCGGAGTGGTTGTAATCATTCT 58.729 45.455 1.29 0.00 0.00 2.40
2908 6625 3.309954 GCGGAGTGGTTGTAATCATTCTC 59.690 47.826 1.29 0.00 0.00 2.87
2909 6626 4.759782 CGGAGTGGTTGTAATCATTCTCT 58.240 43.478 1.29 0.00 0.00 3.10
2910 6627 4.806247 CGGAGTGGTTGTAATCATTCTCTC 59.194 45.833 1.29 0.00 0.00 3.20
2911 6628 5.624509 CGGAGTGGTTGTAATCATTCTCTCA 60.625 44.000 1.29 0.00 0.00 3.27
2912 6629 6.352516 GGAGTGGTTGTAATCATTCTCTCAT 58.647 40.000 1.29 0.00 0.00 2.90
2913 6630 7.500992 GGAGTGGTTGTAATCATTCTCTCATA 58.499 38.462 1.29 0.00 0.00 2.15
2914 6631 8.153550 GGAGTGGTTGTAATCATTCTCTCATAT 58.846 37.037 1.29 0.00 0.00 1.78
2915 6632 9.202273 GAGTGGTTGTAATCATTCTCTCATATC 57.798 37.037 0.00 0.00 0.00 1.63
2916 6633 7.869937 AGTGGTTGTAATCATTCTCTCATATCG 59.130 37.037 0.00 0.00 0.00 2.92
2917 6634 7.867909 GTGGTTGTAATCATTCTCTCATATCGA 59.132 37.037 0.00 0.00 0.00 3.59
2918 6635 8.084684 TGGTTGTAATCATTCTCTCATATCGAG 58.915 37.037 0.00 0.00 43.80 4.04
2949 6688 7.328493 GCGCCTAAATTTTCTAAAACATTCTGT 59.672 33.333 0.00 0.00 0.00 3.41
2950 6689 8.638565 CGCCTAAATTTTCTAAAACATTCTGTG 58.361 33.333 0.00 0.00 0.00 3.66
2970 6709 6.942005 TCTGTGAAAAATCATGGATGTAGTGT 59.058 34.615 0.00 0.00 0.00 3.55
3016 6755 6.751425 CGTAAGCATAAGCATTTCCATTCAAA 59.249 34.615 0.00 0.00 45.49 2.69
3046 6818 9.753674 AATATGGTCATTCTTCCTTGTTTCTTA 57.246 29.630 0.00 0.00 0.00 2.10
3047 6819 6.877611 TGGTCATTCTTCCTTGTTTCTTAC 57.122 37.500 0.00 0.00 0.00 2.34
3051 6823 8.076781 GGTCATTCTTCCTTGTTTCTTACTTTC 58.923 37.037 0.00 0.00 0.00 2.62
3052 6824 8.076781 GTCATTCTTCCTTGTTTCTTACTTTCC 58.923 37.037 0.00 0.00 0.00 3.13
3059 6831 4.178956 TGTTTCTTACTTTCCAAGCCCT 57.821 40.909 0.00 0.00 0.00 5.19
3061 6833 2.200373 TCTTACTTTCCAAGCCCTGC 57.800 50.000 0.00 0.00 0.00 4.85
3063 6835 1.815003 CTTACTTTCCAAGCCCTGCAG 59.185 52.381 6.78 6.78 0.00 4.41
3064 6836 0.609131 TACTTTCCAAGCCCTGCAGC 60.609 55.000 8.66 0.00 0.00 5.25
3066 6838 1.593296 CTTTCCAAGCCCTGCAGCTC 61.593 60.000 8.66 1.32 44.11 4.09
3067 6839 2.356173 TTTCCAAGCCCTGCAGCTCA 62.356 55.000 8.66 0.00 44.11 4.26
3070 6842 1.602888 CAAGCCCTGCAGCTCAGTT 60.603 57.895 8.66 0.00 44.11 3.16
3072 6844 1.177256 AAGCCCTGCAGCTCAGTTTG 61.177 55.000 8.66 0.00 44.11 2.93
3073 6845 2.633509 GCCCTGCAGCTCAGTTTGG 61.634 63.158 8.66 2.26 41.25 3.28
3075 6847 0.036732 CCCTGCAGCTCAGTTTGGTA 59.963 55.000 8.66 0.00 41.25 3.25
3076 6848 1.340405 CCCTGCAGCTCAGTTTGGTAT 60.340 52.381 8.66 0.00 41.25 2.73
3085 6857 4.128925 CTCAGTTTGGTATGAGCTAGCA 57.871 45.455 18.83 0.00 36.80 3.49
3087 6859 5.847304 CTCAGTTTGGTATGAGCTAGCATA 58.153 41.667 18.83 5.35 37.65 3.14
3088 6860 6.425210 TCAGTTTGGTATGAGCTAGCATAT 57.575 37.500 18.83 12.82 37.65 1.78
3089 6861 7.539034 TCAGTTTGGTATGAGCTAGCATATA 57.461 36.000 18.83 11.79 37.65 0.86
3090 6862 8.138928 TCAGTTTGGTATGAGCTAGCATATAT 57.861 34.615 18.83 7.78 37.65 0.86
3091 6863 8.253810 TCAGTTTGGTATGAGCTAGCATATATC 58.746 37.037 18.83 14.76 37.65 1.63
3092 6864 8.037166 CAGTTTGGTATGAGCTAGCATATATCA 58.963 37.037 18.83 17.06 37.65 2.15
3095 6867 7.117285 TGGTATGAGCTAGCATATATCAAGG 57.883 40.000 18.83 0.00 32.98 3.61
3096 6868 5.988561 GGTATGAGCTAGCATATATCAAGGC 59.011 44.000 18.83 5.97 33.67 4.35
3097 6869 4.478206 TGAGCTAGCATATATCAAGGCC 57.522 45.455 18.83 0.00 0.00 5.19
3098 6870 3.840078 TGAGCTAGCATATATCAAGGCCA 59.160 43.478 18.83 0.00 0.00 5.36
3099 6871 4.286808 TGAGCTAGCATATATCAAGGCCAA 59.713 41.667 18.83 0.00 0.00 4.52
3100 6872 4.841422 AGCTAGCATATATCAAGGCCAAG 58.159 43.478 18.83 0.00 0.00 3.61
3101 6873 3.944015 GCTAGCATATATCAAGGCCAAGG 59.056 47.826 10.63 0.00 0.00 3.61
3102 6874 3.446442 AGCATATATCAAGGCCAAGGG 57.554 47.619 5.01 0.00 0.00 3.95
3112 6884 2.519302 GCCAAGGGCCGTATGCAT 60.519 61.111 3.79 3.79 44.06 3.96
3113 6885 2.848858 GCCAAGGGCCGTATGCATG 61.849 63.158 10.16 1.22 44.06 4.06
3114 6886 1.152984 CCAAGGGCCGTATGCATGA 60.153 57.895 10.16 0.00 43.89 3.07
3115 6887 1.447317 CCAAGGGCCGTATGCATGAC 61.447 60.000 10.16 2.94 43.89 3.06
3116 6888 1.523711 AAGGGCCGTATGCATGACG 60.524 57.895 10.16 14.43 43.89 4.35
3123 6895 0.778223 CGTATGCATGACGGTGATCG 59.222 55.000 10.16 0.00 45.88 3.69
3124 6896 0.508641 GTATGCATGACGGTGATCGC 59.491 55.000 10.16 0.00 43.89 4.58
3126 6898 2.885644 GCATGACGGTGATCGCGT 60.886 61.111 5.77 1.86 43.89 6.01
3127 6899 1.587876 GCATGACGGTGATCGCGTA 60.588 57.895 5.77 0.00 43.89 4.42
3129 6901 0.778223 CATGACGGTGATCGCGTATG 59.222 55.000 5.77 0.00 43.89 2.39
3131 6903 1.357690 GACGGTGATCGCGTATGGA 59.642 57.895 5.77 0.00 43.89 3.41
3132 6904 0.039437 GACGGTGATCGCGTATGGAT 60.039 55.000 5.77 0.00 43.89 3.41
3133 6905 0.318699 ACGGTGATCGCGTATGGATG 60.319 55.000 5.77 0.00 43.89 3.51
3134 6906 0.039527 CGGTGATCGCGTATGGATGA 60.040 55.000 5.77 0.00 0.00 2.92
3135 6907 1.402852 CGGTGATCGCGTATGGATGAT 60.403 52.381 5.77 0.00 0.00 2.45
3137 6909 1.914051 GTGATCGCGTATGGATGATCG 59.086 52.381 5.77 0.00 40.02 3.69
3138 6910 1.135402 TGATCGCGTATGGATGATCGG 60.135 52.381 5.77 0.00 40.02 4.18
3139 6911 0.888619 ATCGCGTATGGATGATCGGT 59.111 50.000 5.77 0.00 0.00 4.69
3140 6912 0.671796 TCGCGTATGGATGATCGGTT 59.328 50.000 5.77 0.00 0.00 4.44
3142 6914 1.192312 CGCGTATGGATGATCGGTTTG 59.808 52.381 0.00 0.00 0.00 2.93
3143 6915 2.210116 GCGTATGGATGATCGGTTTGT 58.790 47.619 0.00 0.00 0.00 2.83
3144 6916 2.221055 GCGTATGGATGATCGGTTTGTC 59.779 50.000 0.00 0.00 0.00 3.18
3145 6917 3.717707 CGTATGGATGATCGGTTTGTCT 58.282 45.455 0.00 0.00 0.00 3.41
3147 6919 2.691409 TGGATGATCGGTTTGTCTCC 57.309 50.000 0.00 0.00 0.00 3.71
3149 6921 1.571919 GATGATCGGTTTGTCTCCGG 58.428 55.000 0.00 0.00 46.82 5.14
3158 9017 2.351738 GGTTTGTCTCCGGCTTCAAATG 60.352 50.000 16.25 0.00 33.46 2.32
3163 9022 0.597568 CTCCGGCTTCAAATGCAACA 59.402 50.000 0.00 0.00 0.00 3.33
3164 9023 0.597568 TCCGGCTTCAAATGCAACAG 59.402 50.000 0.00 0.00 0.00 3.16
3166 9025 1.269726 CCGGCTTCAAATGCAACAGTT 60.270 47.619 0.00 0.00 0.00 3.16
3168 9027 2.865551 CGGCTTCAAATGCAACAGTTTT 59.134 40.909 0.00 0.00 0.00 2.43
3169 9028 3.302610 CGGCTTCAAATGCAACAGTTTTG 60.303 43.478 3.78 3.78 0.00 2.44
3171 9030 4.494526 GGCTTCAAATGCAACAGTTTTGTG 60.495 41.667 9.01 5.73 37.67 3.33
3172 9031 4.093261 GCTTCAAATGCAACAGTTTTGTGT 59.907 37.500 9.01 0.00 37.67 3.72
3174 9033 4.814147 TCAAATGCAACAGTTTTGTGTGA 58.186 34.783 9.01 0.00 37.67 3.58
3175 9034 4.863689 TCAAATGCAACAGTTTTGTGTGAG 59.136 37.500 9.01 0.00 37.67 3.51
3182 9041 4.471904 ACAGTTTTGTGTGAGAGACTGA 57.528 40.909 8.15 0.00 38.23 3.41
3183 9042 4.437239 ACAGTTTTGTGTGAGAGACTGAG 58.563 43.478 8.15 0.00 38.23 3.35
3184 9043 4.160439 ACAGTTTTGTGTGAGAGACTGAGA 59.840 41.667 8.15 0.00 38.23 3.27
3185 9044 4.744137 CAGTTTTGTGTGAGAGACTGAGAG 59.256 45.833 0.00 0.00 37.32 3.20
3186 9045 4.404073 AGTTTTGTGTGAGAGACTGAGAGT 59.596 41.667 0.00 0.00 0.00 3.24
3187 9046 3.998099 TTGTGTGAGAGACTGAGAGTG 57.002 47.619 0.00 0.00 0.00 3.51
3188 9047 1.611006 TGTGTGAGAGACTGAGAGTGC 59.389 52.381 0.00 0.00 0.00 4.40
3189 9048 1.611006 GTGTGAGAGACTGAGAGTGCA 59.389 52.381 0.00 0.00 0.00 4.57
3191 9050 2.491298 TGTGAGAGACTGAGAGTGCATC 59.509 50.000 0.00 0.00 0.00 3.91
3192 9051 1.742268 TGAGAGACTGAGAGTGCATCG 59.258 52.381 0.00 0.00 0.00 3.84
3193 9052 1.742831 GAGAGACTGAGAGTGCATCGT 59.257 52.381 0.00 0.00 0.00 3.73
3194 9053 2.939756 GAGAGACTGAGAGTGCATCGTA 59.060 50.000 0.00 0.00 0.00 3.43
3195 9054 2.680841 AGAGACTGAGAGTGCATCGTAC 59.319 50.000 0.00 0.00 0.00 3.67
3199 9058 2.263077 CTGAGAGTGCATCGTACCAAC 58.737 52.381 0.00 0.00 0.00 3.77
3201 9060 0.249398 AGAGTGCATCGTACCAACCC 59.751 55.000 0.00 0.00 0.00 4.11
3202 9061 0.743345 GAGTGCATCGTACCAACCCC 60.743 60.000 0.00 0.00 0.00 4.95
3203 9062 1.747745 GTGCATCGTACCAACCCCC 60.748 63.158 0.00 0.00 0.00 5.40
3204 9063 2.512974 GCATCGTACCAACCCCCG 60.513 66.667 0.00 0.00 0.00 5.73
3205 9064 3.021473 GCATCGTACCAACCCCCGA 62.021 63.158 0.00 0.00 0.00 5.14
3206 9065 1.827394 CATCGTACCAACCCCCGAT 59.173 57.895 0.00 0.00 40.39 4.18
3207 9066 1.042229 CATCGTACCAACCCCCGATA 58.958 55.000 0.00 0.00 37.91 2.92
3208 9067 1.413445 CATCGTACCAACCCCCGATAA 59.587 52.381 0.00 0.00 37.91 1.75
3209 9068 0.823460 TCGTACCAACCCCCGATAAC 59.177 55.000 0.00 0.00 0.00 1.89
3210 9069 0.826062 CGTACCAACCCCCGATAACT 59.174 55.000 0.00 0.00 0.00 2.24
3211 9070 2.031120 CGTACCAACCCCCGATAACTA 58.969 52.381 0.00 0.00 0.00 2.24
3212 9071 2.629617 CGTACCAACCCCCGATAACTAT 59.370 50.000 0.00 0.00 0.00 2.12
3213 9072 3.553508 CGTACCAACCCCCGATAACTATG 60.554 52.174 0.00 0.00 0.00 2.23
3215 9074 2.051692 CCAACCCCCGATAACTATGGA 58.948 52.381 0.00 0.00 0.00 3.41
3216 9075 2.224450 CCAACCCCCGATAACTATGGAC 60.224 54.545 0.00 0.00 0.00 4.02
3218 9077 1.061967 ACCCCCGATAACTATGGACCA 60.062 52.381 0.00 0.00 0.00 4.02
3219 9078 2.266279 CCCCCGATAACTATGGACCAT 58.734 52.381 12.67 12.67 0.00 3.55
3220 9079 2.027192 CCCCCGATAACTATGGACCATG 60.027 54.545 17.73 9.48 0.00 3.66
3222 9081 2.027192 CCCGATAACTATGGACCATGGG 60.027 54.545 20.78 14.67 0.00 4.00
3223 9082 2.615493 CCGATAACTATGGACCATGGGC 60.615 54.545 20.78 14.45 0.00 5.36
3225 9084 3.679389 GATAACTATGGACCATGGGCTG 58.321 50.000 19.55 8.18 0.00 4.85
3243 9102 2.846371 GGATGCATCCACCGCTATC 58.154 57.895 35.93 9.27 46.38 2.08
3244 9103 0.674895 GGATGCATCCACCGCTATCC 60.675 60.000 35.93 10.34 46.38 2.59
3245 9104 1.004560 ATGCATCCACCGCTATCCG 60.005 57.895 0.00 0.00 0.00 4.18
3246 9105 3.044305 GCATCCACCGCTATCCGC 61.044 66.667 0.00 0.00 35.03 5.54
3247 9106 2.421314 CATCCACCGCTATCCGCA 59.579 61.111 0.00 0.00 39.08 5.69
3250 9109 1.188219 ATCCACCGCTATCCGCAGAT 61.188 55.000 0.00 0.00 39.08 2.90
3253 9112 1.066858 CCACCGCTATCCGCAGATTAT 60.067 52.381 0.00 0.00 39.08 1.28
3254 9113 1.995484 CACCGCTATCCGCAGATTATG 59.005 52.381 0.00 0.00 39.08 1.90
3255 9114 1.893137 ACCGCTATCCGCAGATTATGA 59.107 47.619 0.00 0.00 39.08 2.15
3256 9115 2.094494 ACCGCTATCCGCAGATTATGAG 60.094 50.000 0.00 0.00 39.08 2.90
3257 9116 1.923204 CGCTATCCGCAGATTATGAGC 59.077 52.381 0.00 0.00 39.08 4.26
3260 9119 3.309138 GCTATCCGCAGATTATGAGCATG 59.691 47.826 0.00 0.00 38.92 4.06
3261 9120 2.916702 TCCGCAGATTATGAGCATGT 57.083 45.000 0.00 0.00 0.00 3.21
3262 9121 3.198409 TCCGCAGATTATGAGCATGTT 57.802 42.857 0.00 0.00 0.00 2.71
3265 9124 2.096565 CGCAGATTATGAGCATGTTCGG 60.097 50.000 5.02 0.00 0.00 4.30
3266 9125 3.133691 GCAGATTATGAGCATGTTCGGA 58.866 45.455 5.02 0.00 0.00 4.55
3268 9127 4.214971 GCAGATTATGAGCATGTTCGGAAT 59.785 41.667 5.02 6.74 0.00 3.01
3269 9128 5.278169 GCAGATTATGAGCATGTTCGGAATT 60.278 40.000 5.02 0.00 0.00 2.17
3270 9129 6.369005 CAGATTATGAGCATGTTCGGAATTC 58.631 40.000 5.02 0.00 0.00 2.17
3271 9130 5.471456 AGATTATGAGCATGTTCGGAATTCC 59.529 40.000 15.01 15.01 0.00 3.01
3284 9143 3.268013 GGAATTCCGCCGATAACAATG 57.732 47.619 9.17 0.00 0.00 2.82
3285 9144 2.031157 GGAATTCCGCCGATAACAATGG 60.031 50.000 9.17 0.00 0.00 3.16
3286 9145 2.631160 ATTCCGCCGATAACAATGGA 57.369 45.000 0.00 0.00 0.00 3.41
3287 9146 1.658994 TTCCGCCGATAACAATGGAC 58.341 50.000 0.00 0.00 0.00 4.02
3288 9147 0.179067 TCCGCCGATAACAATGGACC 60.179 55.000 0.00 0.00 0.00 4.46
3289 9148 0.462937 CCGCCGATAACAATGGACCA 60.463 55.000 0.00 0.00 0.00 4.02
3293 9152 2.229792 CCGATAACAATGGACCATGGG 58.770 52.381 18.09 9.08 0.00 4.00
3294 9153 1.608590 CGATAACAATGGACCATGGGC 59.391 52.381 18.09 14.45 0.00 5.36
3295 9154 2.749466 CGATAACAATGGACCATGGGCT 60.749 50.000 19.55 0.00 0.00 5.19
3307 9166 0.387929 CATGGGCTGGATGCATTCAC 59.612 55.000 2.63 1.24 45.15 3.18
3308 9167 0.757935 ATGGGCTGGATGCATTCACC 60.758 55.000 2.63 10.51 45.15 4.02
3309 9168 2.484062 GGGCTGGATGCATTCACCG 61.484 63.158 2.63 0.00 45.15 4.94
3310 9169 2.410469 GCTGGATGCATTCACCGC 59.590 61.111 2.63 3.21 42.31 5.68
3311 9170 2.117156 GCTGGATGCATTCACCGCT 61.117 57.895 2.63 0.00 42.31 5.52
3312 9171 0.815213 GCTGGATGCATTCACCGCTA 60.815 55.000 2.63 0.00 42.31 4.26
3313 9172 1.888215 CTGGATGCATTCACCGCTAT 58.112 50.000 2.63 0.00 0.00 2.97
3314 9173 1.802960 CTGGATGCATTCACCGCTATC 59.197 52.381 2.63 0.00 0.00 2.08
3315 9174 1.160137 GGATGCATTCACCGCTATCC 58.840 55.000 0.00 0.00 33.23 2.59
3316 9175 0.792640 GATGCATTCACCGCTATCCG 59.207 55.000 0.00 0.00 0.00 4.18
3317 9176 1.230635 ATGCATTCACCGCTATCCGC 61.231 55.000 0.00 0.00 35.03 5.54
3318 9177 1.887242 GCATTCACCGCTATCCGCA 60.887 57.895 0.00 0.00 39.08 5.69
3319 9178 1.835483 GCATTCACCGCTATCCGCAG 61.835 60.000 0.00 0.00 39.08 5.18
3320 9179 0.249447 CATTCACCGCTATCCGCAGA 60.249 55.000 0.00 0.00 39.08 4.26
3321 9180 0.681733 ATTCACCGCTATCCGCAGAT 59.318 50.000 0.00 0.00 39.08 2.90
3323 9182 1.324383 TCACCGCTATCCGCAGATTA 58.676 50.000 0.00 0.00 39.08 1.75
3325 9184 1.995484 CACCGCTATCCGCAGATTATG 59.005 52.381 0.00 0.00 39.08 1.90
3326 9185 1.893137 ACCGCTATCCGCAGATTATGA 59.107 47.619 0.00 0.00 39.08 2.15
3327 9186 2.094494 ACCGCTATCCGCAGATTATGAG 60.094 50.000 0.00 0.00 39.08 2.90
3330 9189 2.093764 GCTATCCGCAGATTATGAGCCT 60.094 50.000 0.00 0.00 38.92 4.58
3331 9190 2.469274 ATCCGCAGATTATGAGCCTG 57.531 50.000 0.00 0.00 0.00 4.85
3332 9191 1.123077 TCCGCAGATTATGAGCCTGT 58.877 50.000 0.00 0.00 0.00 4.00
3334 9193 1.869767 CCGCAGATTATGAGCCTGTTC 59.130 52.381 0.00 0.00 0.00 3.18
3335 9194 1.524355 CGCAGATTATGAGCCTGTTCG 59.476 52.381 0.00 0.00 0.00 3.95
3336 9195 1.869767 GCAGATTATGAGCCTGTTCGG 59.130 52.381 0.00 0.00 0.00 4.30
3337 9196 2.483714 GCAGATTATGAGCCTGTTCGGA 60.484 50.000 0.00 0.00 33.16 4.55
3338 9197 3.797039 CAGATTATGAGCCTGTTCGGAA 58.203 45.455 0.00 0.00 33.16 4.30
3340 9199 4.818546 CAGATTATGAGCCTGTTCGGAATT 59.181 41.667 0.00 0.00 33.16 2.17
3341 9200 5.049818 CAGATTATGAGCCTGTTCGGAATTC 60.050 44.000 0.00 0.00 33.16 2.17
3342 9201 2.044123 ATGAGCCTGTTCGGAATTCC 57.956 50.000 15.01 15.01 33.16 3.01
3353 9212 1.649267 GGAATTCCGCCATCTTCGC 59.351 57.895 9.17 0.00 0.00 4.70
3362 9221 1.786049 GCCATCTTCGCGAAATCCCC 61.786 60.000 23.54 7.78 0.00 4.81
3366 9225 1.883084 CTTCGCGAAATCCCCGGAG 60.883 63.158 23.54 3.42 0.00 4.63
3368 9227 4.530857 CGCGAAATCCCCGGAGCT 62.531 66.667 0.73 0.00 0.00 4.09
3369 9228 2.897350 GCGAAATCCCCGGAGCTG 60.897 66.667 0.73 0.00 0.00 4.24
3370 9229 2.897350 CGAAATCCCCGGAGCTGC 60.897 66.667 0.73 0.00 0.00 5.25
3371 9230 2.897350 GAAATCCCCGGAGCTGCG 60.897 66.667 21.89 21.89 0.00 5.18
3372 9231 4.489771 AAATCCCCGGAGCTGCGG 62.490 66.667 36.86 36.86 0.00 5.69
3387 9246 4.399395 CGGAGCCAGGAAGCAGCA 62.399 66.667 0.00 0.00 34.23 4.41
3389 9248 2.338785 GGAGCCAGGAAGCAGCAAC 61.339 63.158 0.00 0.00 34.23 4.17
3390 9249 1.303155 GAGCCAGGAAGCAGCAACT 60.303 57.895 0.00 0.00 34.23 3.16
3391 9250 1.303155 AGCCAGGAAGCAGCAACTC 60.303 57.895 0.00 0.00 34.23 3.01
3392 9251 2.338785 GCCAGGAAGCAGCAACTCC 61.339 63.158 0.00 0.00 0.00 3.85
3393 9252 1.073722 CCAGGAAGCAGCAACTCCA 59.926 57.895 10.06 0.00 0.00 3.86
3394 9253 1.239968 CCAGGAAGCAGCAACTCCAC 61.240 60.000 10.06 0.00 0.00 4.02
3396 9255 1.301716 GGAAGCAGCAACTCCACGA 60.302 57.895 0.00 0.00 0.00 4.35
3397 9256 0.674895 GGAAGCAGCAACTCCACGAT 60.675 55.000 0.00 0.00 0.00 3.73
3398 9257 1.160137 GAAGCAGCAACTCCACGATT 58.840 50.000 0.00 0.00 0.00 3.34
3399 9258 1.537202 GAAGCAGCAACTCCACGATTT 59.463 47.619 0.00 0.00 0.00 2.17
3404 9263 3.300009 CAGCAACTCCACGATTTTCAAC 58.700 45.455 0.00 0.00 0.00 3.18
3405 9264 2.948979 AGCAACTCCACGATTTTCAACA 59.051 40.909 0.00 0.00 0.00 3.33
3406 9265 3.003689 AGCAACTCCACGATTTTCAACAG 59.996 43.478 0.00 0.00 0.00 3.16
3407 9266 3.243068 GCAACTCCACGATTTTCAACAGT 60.243 43.478 0.00 0.00 0.00 3.55
3409 9268 5.504994 GCAACTCCACGATTTTCAACAGTAA 60.505 40.000 0.00 0.00 0.00 2.24
3410 9269 5.668558 ACTCCACGATTTTCAACAGTAAC 57.331 39.130 0.00 0.00 0.00 2.50
3413 9272 4.753107 TCCACGATTTTCAACAGTAACTCC 59.247 41.667 0.00 0.00 0.00 3.85
3414 9273 4.513692 CCACGATTTTCAACAGTAACTCCA 59.486 41.667 0.00 0.00 0.00 3.86
3415 9274 5.334105 CCACGATTTTCAACAGTAACTCCAG 60.334 44.000 0.00 0.00 0.00 3.86
3417 9276 4.378459 CGATTTTCAACAGTAACTCCAGCC 60.378 45.833 0.00 0.00 0.00 4.85
3419 9278 0.320421 TCAACAGTAACTCCAGCCGC 60.320 55.000 0.00 0.00 0.00 6.53
3420 9279 0.320771 CAACAGTAACTCCAGCCGCT 60.321 55.000 0.00 0.00 0.00 5.52
3422 9281 1.153549 CAGTAACTCCAGCCGCTCC 60.154 63.158 0.00 0.00 0.00 4.70
3423 9282 2.202756 GTAACTCCAGCCGCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
3435 9294 1.433879 CGCTCCGGGAGTAGAGTTG 59.566 63.158 24.30 0.00 32.47 3.16
3437 9296 0.173708 GCTCCGGGAGTAGAGTTGTG 59.826 60.000 24.30 0.00 32.47 3.33
3438 9297 0.818296 CTCCGGGAGTAGAGTTGTGG 59.182 60.000 16.15 0.00 0.00 4.17
3439 9298 1.218316 CCGGGAGTAGAGTTGTGGC 59.782 63.158 0.00 0.00 0.00 5.01
3440 9299 1.153823 CGGGAGTAGAGTTGTGGCG 60.154 63.158 0.00 0.00 0.00 5.69
3441 9300 1.448013 GGGAGTAGAGTTGTGGCGC 60.448 63.158 0.00 0.00 0.00 6.53
3445 9304 1.805945 GTAGAGTTGTGGCGCGGAG 60.806 63.158 8.83 0.00 0.00 4.63
3446 9305 3.001902 TAGAGTTGTGGCGCGGAGG 62.002 63.158 8.83 0.00 0.00 4.30
3448 9307 4.681978 AGTTGTGGCGCGGAGGTC 62.682 66.667 8.83 0.00 0.00 3.85
3461 9320 3.003763 AGGTCCTCCGAACAGGGC 61.004 66.667 0.00 0.00 41.52 5.19
3462 9321 3.319198 GGTCCTCCGAACAGGGCA 61.319 66.667 2.59 0.00 40.32 5.36
3463 9322 2.670148 GGTCCTCCGAACAGGGCAT 61.670 63.158 2.59 0.00 40.32 4.40
3464 9323 1.335132 GGTCCTCCGAACAGGGCATA 61.335 60.000 2.59 0.00 40.32 3.14
3465 9324 0.759346 GTCCTCCGAACAGGGCATAT 59.241 55.000 0.00 0.00 38.16 1.78
3466 9325 1.968493 GTCCTCCGAACAGGGCATATA 59.032 52.381 0.00 0.00 38.16 0.86
3467 9326 2.567615 GTCCTCCGAACAGGGCATATAT 59.432 50.000 0.00 0.00 38.16 0.86
3468 9327 3.767673 GTCCTCCGAACAGGGCATATATA 59.232 47.826 0.00 0.00 38.16 0.86
3469 9328 4.406003 GTCCTCCGAACAGGGCATATATAT 59.594 45.833 0.00 0.00 38.16 0.86
3470 9329 5.597182 GTCCTCCGAACAGGGCATATATATA 59.403 44.000 0.00 0.00 38.16 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.299165 GTGTGACAGCGACGTCAGT 60.299 57.895 17.16 10.64 46.23 3.41
1 2 0.999228 GAGTGTGACAGCGACGTCAG 60.999 60.000 17.16 9.59 46.23 3.51
2 3 1.008881 GAGTGTGACAGCGACGTCA 60.009 57.895 17.16 3.47 43.54 4.35
4 5 2.051256 CGAGTGTGACAGCGACGT 60.051 61.111 2.05 0.00 0.00 4.34
5 6 3.461982 GCGAGTGTGACAGCGACG 61.462 66.667 11.29 4.52 0.00 5.12
6 7 3.106407 GGCGAGTGTGACAGCGAC 61.106 66.667 11.29 5.01 0.00 5.19
81 82 4.785453 GGCTGCGTCTTCCCCTGG 62.785 72.222 0.00 0.00 0.00 4.45
85 86 4.329545 TGGTGGCTGCGTCTTCCC 62.330 66.667 0.00 0.00 0.00 3.97
87 88 3.414700 CGTGGTGGCTGCGTCTTC 61.415 66.667 0.00 0.00 0.00 2.87
88 89 3.865929 CTCGTGGTGGCTGCGTCTT 62.866 63.158 0.00 0.00 0.00 3.01
93 94 4.767255 CCCTCTCGTGGTGGCTGC 62.767 72.222 0.00 0.00 0.00 5.25
94 95 4.087892 CCCCTCTCGTGGTGGCTG 62.088 72.222 0.00 0.00 0.00 4.85
97 98 2.185310 CTTTCCCCCTCTCGTGGTGG 62.185 65.000 0.00 0.00 0.00 4.61
98 99 1.296715 CTTTCCCCCTCTCGTGGTG 59.703 63.158 0.00 0.00 0.00 4.17
99 100 2.593956 GCTTTCCCCCTCTCGTGGT 61.594 63.158 0.00 0.00 0.00 4.16
100 101 2.269241 GCTTTCCCCCTCTCGTGG 59.731 66.667 0.00 0.00 0.00 4.94
101 102 2.269241 GGCTTTCCCCCTCTCGTG 59.731 66.667 0.00 0.00 0.00 4.35
118 119 4.624364 TATGATGGCGGCGGCAGG 62.624 66.667 37.95 0.00 42.43 4.85
119 120 3.046087 CTATGATGGCGGCGGCAG 61.046 66.667 37.95 22.23 42.43 4.85
120 121 4.624364 CCTATGATGGCGGCGGCA 62.624 66.667 37.75 37.75 43.52 5.69
128 129 1.273606 CCGTAGTCTGGCCTATGATGG 59.726 57.143 3.32 0.00 0.00 3.51
131 132 1.113517 GCCCGTAGTCTGGCCTATGA 61.114 60.000 3.32 0.00 41.97 2.15
132 133 1.367840 GCCCGTAGTCTGGCCTATG 59.632 63.158 3.32 0.00 41.97 2.23
137 138 4.814294 CCACGCCCGTAGTCTGGC 62.814 72.222 0.00 0.00 44.41 4.85
138 139 4.814294 GCCACGCCCGTAGTCTGG 62.814 72.222 0.00 0.00 0.00 3.86
139 140 4.814294 GGCCACGCCCGTAGTCTG 62.814 72.222 0.00 0.00 44.06 3.51
161 162 4.760047 TCTCTTCCTTGCCGCCGC 62.760 66.667 0.00 0.00 0.00 6.53
162 163 2.510238 CTCTCTTCCTTGCCGCCG 60.510 66.667 0.00 0.00 0.00 6.46
163 164 2.124942 CCTCTCTTCCTTGCCGCC 60.125 66.667 0.00 0.00 0.00 6.13
164 165 1.448717 GTCCTCTCTTCCTTGCCGC 60.449 63.158 0.00 0.00 0.00 6.53
165 166 1.153745 CGTCCTCTCTTCCTTGCCG 60.154 63.158 0.00 0.00 0.00 5.69
166 167 0.174617 CTCGTCCTCTCTTCCTTGCC 59.825 60.000 0.00 0.00 0.00 4.52
167 168 0.174617 CCTCGTCCTCTCTTCCTTGC 59.825 60.000 0.00 0.00 0.00 4.01
168 169 0.820871 CCCTCGTCCTCTCTTCCTTG 59.179 60.000 0.00 0.00 0.00 3.61
169 170 0.705253 TCCCTCGTCCTCTCTTCCTT 59.295 55.000 0.00 0.00 0.00 3.36
170 171 0.257616 CTCCCTCGTCCTCTCTTCCT 59.742 60.000 0.00 0.00 0.00 3.36
171 172 0.753848 CCTCCCTCGTCCTCTCTTCC 60.754 65.000 0.00 0.00 0.00 3.46
172 173 0.256464 TCCTCCCTCGTCCTCTCTTC 59.744 60.000 0.00 0.00 0.00 2.87
173 174 0.257616 CTCCTCCCTCGTCCTCTCTT 59.742 60.000 0.00 0.00 0.00 2.85
175 176 1.152839 CCTCCTCCCTCGTCCTCTC 60.153 68.421 0.00 0.00 0.00 3.20
177 178 2.835895 GCCTCCTCCCTCGTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
179 180 3.986116 AAGGCCTCCTCCCTCGTCC 62.986 68.421 5.23 0.00 30.89 4.79
180 181 1.990614 AAAGGCCTCCTCCCTCGTC 60.991 63.158 5.23 0.00 30.89 4.20
181 182 2.122954 AAAGGCCTCCTCCCTCGT 59.877 61.111 5.23 0.00 30.89 4.18
182 183 2.586792 CAAAGGCCTCCTCCCTCG 59.413 66.667 5.23 0.00 30.89 4.63
183 184 2.684499 CCCAAAGGCCTCCTCCCTC 61.684 68.421 5.23 0.00 30.89 4.30
184 185 2.615288 CCCAAAGGCCTCCTCCCT 60.615 66.667 5.23 0.00 30.89 4.20
221 222 3.834799 GACCTAGGCGACACGGGG 61.835 72.222 9.30 0.00 0.00 5.73
222 223 3.064987 CTGACCTAGGCGACACGGG 62.065 68.421 9.30 0.00 0.00 5.28
223 224 2.490217 CTGACCTAGGCGACACGG 59.510 66.667 9.30 0.00 0.00 4.94
224 225 2.490217 CCTGACCTAGGCGACACG 59.510 66.667 9.30 0.00 40.38 4.49
247 248 4.075793 TCCCTCTCCCTGTCCCCG 62.076 72.222 0.00 0.00 0.00 5.73
248 249 2.041405 CTCCCTCTCCCTGTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
249 250 1.382009 GACTCCCTCTCCCTGTCCC 60.382 68.421 0.00 0.00 0.00 4.46
250 251 0.973496 GTGACTCCCTCTCCCTGTCC 60.973 65.000 0.00 0.00 0.00 4.02
251 252 1.316706 CGTGACTCCCTCTCCCTGTC 61.317 65.000 0.00 0.00 0.00 3.51
252 253 1.304547 CGTGACTCCCTCTCCCTGT 60.305 63.158 0.00 0.00 0.00 4.00
253 254 1.000771 TCGTGACTCCCTCTCCCTG 60.001 63.158 0.00 0.00 0.00 4.45
256 257 1.755008 CCCTCGTGACTCCCTCTCC 60.755 68.421 0.00 0.00 0.00 3.71
257 258 0.750182 CTCCCTCGTGACTCCCTCTC 60.750 65.000 0.00 0.00 0.00 3.20
258 259 1.304952 CTCCCTCGTGACTCCCTCT 59.695 63.158 0.00 0.00 0.00 3.69
260 261 1.801302 TTCCTCCCTCGTGACTCCCT 61.801 60.000 0.00 0.00 0.00 4.20
261 262 1.305046 TTCCTCCCTCGTGACTCCC 60.305 63.158 0.00 0.00 0.00 4.30
262 263 1.891616 GTTCCTCCCTCGTGACTCC 59.108 63.158 0.00 0.00 0.00 3.85
263 264 0.959372 TCGTTCCTCCCTCGTGACTC 60.959 60.000 0.00 0.00 0.00 3.36
264 265 0.323542 ATCGTTCCTCCCTCGTGACT 60.324 55.000 0.00 0.00 0.00 3.41
266 267 1.954382 CATATCGTTCCTCCCTCGTGA 59.046 52.381 0.00 0.00 0.00 4.35
267 268 1.681793 ACATATCGTTCCTCCCTCGTG 59.318 52.381 0.00 0.00 0.00 4.35
268 269 1.681793 CACATATCGTTCCTCCCTCGT 59.318 52.381 0.00 0.00 0.00 4.18
270 271 2.287668 CGTCACATATCGTTCCTCCCTC 60.288 54.545 0.00 0.00 0.00 4.30
271 272 1.681793 CGTCACATATCGTTCCTCCCT 59.318 52.381 0.00 0.00 0.00 4.20
272 273 1.269621 CCGTCACATATCGTTCCTCCC 60.270 57.143 0.00 0.00 0.00 4.30
273 274 1.269621 CCCGTCACATATCGTTCCTCC 60.270 57.143 0.00 0.00 0.00 4.30
274 275 1.269621 CCCCGTCACATATCGTTCCTC 60.270 57.143 0.00 0.00 0.00 3.71
275 276 0.750850 CCCCGTCACATATCGTTCCT 59.249 55.000 0.00 0.00 0.00 3.36
276 277 0.748450 TCCCCGTCACATATCGTTCC 59.252 55.000 0.00 0.00 0.00 3.62
278 279 1.187974 TGTCCCCGTCACATATCGTT 58.812 50.000 0.00 0.00 0.00 3.85
279 280 1.410004 ATGTCCCCGTCACATATCGT 58.590 50.000 0.00 0.00 32.48 3.73
280 281 2.526304 AATGTCCCCGTCACATATCG 57.474 50.000 0.00 0.00 33.12 2.92
281 282 7.094933 GGTTAATTAATGTCCCCGTCACATATC 60.095 40.741 0.31 0.00 33.12 1.63
282 283 6.713450 GGTTAATTAATGTCCCCGTCACATAT 59.287 38.462 0.31 0.00 33.12 1.78
283 284 6.056884 GGTTAATTAATGTCCCCGTCACATA 58.943 40.000 0.31 0.00 33.12 2.29
284 285 4.885325 GGTTAATTAATGTCCCCGTCACAT 59.115 41.667 0.31 0.00 35.94 3.21
285 286 4.019141 AGGTTAATTAATGTCCCCGTCACA 60.019 41.667 0.31 0.00 0.00 3.58
287 288 4.519213 CAGGTTAATTAATGTCCCCGTCA 58.481 43.478 0.31 0.00 0.00 4.35
288 289 3.881089 CCAGGTTAATTAATGTCCCCGTC 59.119 47.826 0.31 0.00 0.00 4.79
290 291 3.881089 GTCCAGGTTAATTAATGTCCCCG 59.119 47.826 0.31 0.00 0.00 5.73
291 292 4.862371 TGTCCAGGTTAATTAATGTCCCC 58.138 43.478 0.31 0.00 0.00 4.81
292 293 6.184789 TCTTGTCCAGGTTAATTAATGTCCC 58.815 40.000 0.31 0.00 0.00 4.46
295 296 8.877864 TCATTCTTGTCCAGGTTAATTAATGT 57.122 30.769 0.31 0.00 0.00 2.71
390 394 0.603439 GGACGGGCGGTACTCAAAAA 60.603 55.000 0.00 0.00 0.00 1.94
392 396 2.658422 GGACGGGCGGTACTCAAA 59.342 61.111 0.00 0.00 0.00 2.69
393 397 3.751246 CGGACGGGCGGTACTCAA 61.751 66.667 5.83 0.00 0.00 3.02
405 409 4.752879 ATTGGTGACGGGCGGACG 62.753 66.667 0.00 0.00 40.31 4.79
406 410 2.359478 AATTGGTGACGGGCGGAC 60.359 61.111 0.00 0.00 0.00 4.79
408 412 4.114997 GCAATTGGTGACGGGCGG 62.115 66.667 7.72 0.00 0.00 6.13
409 413 3.326889 CTGCAATTGGTGACGGGCG 62.327 63.158 7.72 0.00 0.00 6.13
410 414 2.568090 CTGCAATTGGTGACGGGC 59.432 61.111 7.72 0.00 0.00 6.13
411 415 2.568090 GCTGCAATTGGTGACGGG 59.432 61.111 7.72 0.00 0.00 5.28
412 416 2.176546 CGCTGCAATTGGTGACGG 59.823 61.111 7.72 0.00 0.00 4.79
551 2341 6.262273 ACATGAGAACAACGGTTAGTCATTTT 59.738 34.615 0.00 0.00 38.10 1.82
618 2409 6.202188 GTGCACAACTACTAGCTTTGTTTCTA 59.798 38.462 13.17 0.00 30.98 2.10
667 2459 1.392853 GATGCAAGAGTCACAAGAGCG 59.607 52.381 0.00 0.00 0.00 5.03
683 2475 1.153147 GTTCTTCTCCCCCGGATGC 60.153 63.158 0.73 0.00 0.00 3.91
758 2555 6.015940 GGCACCCAATCCATTCTTCTAATTAG 60.016 42.308 6.11 6.11 0.00 1.73
801 2608 9.155975 CAACTAATAACCATATAGTGCCAGATC 57.844 37.037 0.00 0.00 0.00 2.75
901 2713 5.556006 TTGCTACCAACTACCAACTAACT 57.444 39.130 0.00 0.00 0.00 2.24
932 4157 7.255871 GGAGAGACCGGTCTTACATATAACAAT 60.256 40.741 36.55 10.84 40.61 2.71
965 4205 3.138304 ACATGTGTTTCTATGCGTGTGT 58.862 40.909 0.00 0.00 30.88 3.72
988 4228 1.079503 GAACTCATGGTGTCGAAGCC 58.920 55.000 0.00 0.00 0.00 4.35
1034 4276 2.486982 TCTACGACCAGCTTGTAGACAC 59.513 50.000 5.04 0.00 39.94 3.67
1131 4373 1.439644 GAGCTGACCCACGATCTCC 59.560 63.158 0.00 0.00 0.00 3.71
1145 4387 2.416432 GGCGTAAGGTCTCGGAGCT 61.416 63.158 0.00 0.00 42.52 4.09
1194 4436 2.107750 ATGGCGACCGCAGAGATG 59.892 61.111 16.47 0.00 44.11 2.90
1195 4437 1.391933 TACATGGCGACCGCAGAGAT 61.392 55.000 16.47 0.00 44.11 2.75
1203 4445 4.798907 CGTGATATTAGATACATGGCGACC 59.201 45.833 0.00 0.00 0.00 4.79
1257 4499 1.272037 TGATGAGTGCCATGGAAGCAA 60.272 47.619 18.40 0.00 43.02 3.91
1305 4547 1.669437 TAATTGGCGTGCGTGCTCA 60.669 52.632 0.00 0.00 34.52 4.26
1415 4657 1.369091 CTTGTGCGGTGGGATGTAGC 61.369 60.000 0.00 0.00 0.00 3.58
1749 4991 2.044650 CCGACGTAGAGGTGGGGA 60.045 66.667 0.00 0.00 32.70 4.81
2037 5279 2.363038 TGCAAACAAAAGCTGCTCAGAT 59.637 40.909 1.00 0.00 37.00 2.90
2068 5310 0.588252 CTGGACAGTTTGTTCGCCAG 59.412 55.000 0.00 0.00 37.21 4.85
2074 5316 1.447317 CGCCTGCTGGACAGTTTGTT 61.447 55.000 14.77 0.00 45.68 2.83
2076 5318 1.447317 AACGCCTGCTGGACAGTTTG 61.447 55.000 14.77 0.00 45.68 2.93
2106 5351 0.107831 CCGTGAGAAAGTTGGGGACA 59.892 55.000 0.00 0.00 39.83 4.02
2118 5363 0.036732 AATGCTCAAAGGCCGTGAGA 59.963 50.000 32.09 21.13 44.44 3.27
2127 5372 4.093514 CGTGTATGCAGAAATGCTCAAAG 58.906 43.478 1.53 0.00 35.49 2.77
2235 5480 2.540361 GCTAGATACGTTTCCGAAGCGA 60.540 50.000 22.13 7.91 37.88 4.93
2248 5493 4.130286 ACCAAACTGAGCTGCTAGATAC 57.870 45.455 0.15 0.00 0.00 2.24
2253 5498 4.128925 CTCATACCAAACTGAGCTGCTA 57.871 45.455 0.15 0.00 33.12 3.49
2382 5627 0.397535 CATTGCTATTGGGGGCTGGT 60.398 55.000 0.00 0.00 0.00 4.00
2463 5708 2.236146 TGCCTCCACGACTTATTGATGT 59.764 45.455 0.00 0.00 0.00 3.06
2465 5710 2.501723 AGTGCCTCCACGACTTATTGAT 59.498 45.455 0.00 0.00 46.62 2.57
2466 5711 1.899814 AGTGCCTCCACGACTTATTGA 59.100 47.619 0.00 0.00 46.62 2.57
2475 5720 1.369625 GATTTACCAGTGCCTCCACG 58.630 55.000 0.00 0.00 46.62 4.94
2482 5727 4.926238 CAGAGATATCCGATTTACCAGTGC 59.074 45.833 0.00 0.00 0.00 4.40
2502 5747 4.400251 GGTTGGAGCATGAATTCAATCAGA 59.600 41.667 13.09 1.58 31.76 3.27
2503 5748 4.158949 TGGTTGGAGCATGAATTCAATCAG 59.841 41.667 13.09 4.36 31.76 2.90
2529 5789 9.581289 TCTTTATCAGTTTGGACTTTTGGATAA 57.419 29.630 0.00 0.00 32.54 1.75
2531 5791 7.944554 TCTCTTTATCAGTTTGGACTTTTGGAT 59.055 33.333 0.00 0.00 32.54 3.41
2533 5793 7.308830 CCTCTCTTTATCAGTTTGGACTTTTGG 60.309 40.741 0.00 0.00 32.54 3.28
2538 5798 4.534103 AGCCTCTCTTTATCAGTTTGGACT 59.466 41.667 0.00 0.00 36.25 3.85
2539 5799 4.633565 CAGCCTCTCTTTATCAGTTTGGAC 59.366 45.833 0.00 0.00 0.00 4.02
2541 5801 4.633565 GTCAGCCTCTCTTTATCAGTTTGG 59.366 45.833 0.00 0.00 0.00 3.28
2542 5802 5.240891 TGTCAGCCTCTCTTTATCAGTTTG 58.759 41.667 0.00 0.00 0.00 2.93
2551 5811 8.897752 GTTGAAATATATTGTCAGCCTCTCTTT 58.102 33.333 0.00 0.00 0.00 2.52
2559 5819 7.970061 ACACACATGTTGAAATATATTGTCAGC 59.030 33.333 12.90 7.80 34.46 4.26
2589 5849 6.983890 ACAACACCACCAAGTAATCATTTTTC 59.016 34.615 0.00 0.00 0.00 2.29
2596 5856 5.705609 AATGACAACACCACCAAGTAATC 57.294 39.130 0.00 0.00 0.00 1.75
2599 5859 5.186021 ACAAAAATGACAACACCACCAAGTA 59.814 36.000 0.00 0.00 0.00 2.24
2604 5864 4.932200 TGAAACAAAAATGACAACACCACC 59.068 37.500 0.00 0.00 0.00 4.61
2605 5865 6.660887 ATGAAACAAAAATGACAACACCAC 57.339 33.333 0.00 0.00 0.00 4.16
2633 5893 8.974060 TTCACTCGGCTTTATATTTAAATCCT 57.026 30.769 3.39 0.00 33.35 3.24
2641 5901 9.614792 AGAAAAGTATTCACTCGGCTTTATATT 57.385 29.630 0.00 0.00 32.29 1.28
2653 5913 8.148999 ACTACTTTTCGGAGAAAAGTATTCACT 58.851 33.333 31.20 16.90 45.86 3.41
2654 5914 8.307921 ACTACTTTTCGGAGAAAAGTATTCAC 57.692 34.615 31.20 0.00 45.86 3.18
2661 5921 7.326547 GTGTCTCTACTACTTTTCGGAGAAAAG 59.673 40.741 24.99 24.99 45.90 2.27
2670 5930 8.766151 CCTTTTGAAGTGTCTCTACTACTTTTC 58.234 37.037 0.00 0.00 34.99 2.29
2680 5940 2.103263 AGCGTCCTTTTGAAGTGTCTCT 59.897 45.455 0.00 0.00 0.00 3.10
2683 5943 2.210116 TGAGCGTCCTTTTGAAGTGTC 58.790 47.619 0.00 0.00 0.00 3.67
2690 5950 4.561735 TTACCTTTTGAGCGTCCTTTTG 57.438 40.909 0.00 0.00 0.00 2.44
2694 5954 2.152016 GCTTTACCTTTTGAGCGTCCT 58.848 47.619 0.00 0.00 0.00 3.85
2695 5955 1.199327 GGCTTTACCTTTTGAGCGTCC 59.801 52.381 0.00 0.00 36.02 4.79
2697 5957 1.975660 TGGCTTTACCTTTTGAGCGT 58.024 45.000 0.00 0.00 40.22 5.07
2699 5959 2.488153 ACGATGGCTTTACCTTTTGAGC 59.512 45.455 0.00 0.00 40.22 4.26
2750 6010 9.280456 TGGGAGACTAAATATAGACTTCCTTTT 57.720 33.333 11.98 0.00 44.99 2.27
2752 6012 8.706521 GTTGGGAGACTAAATATAGACTTCCTT 58.293 37.037 11.98 0.00 44.99 3.36
2754 6014 8.252624 AGTTGGGAGACTAAATATAGACTTCC 57.747 38.462 5.92 5.92 44.98 3.46
2755 6015 8.915036 TGAGTTGGGAGACTAAATATAGACTTC 58.085 37.037 0.00 0.00 34.87 3.01
2757 6017 9.084533 GATGAGTTGGGAGACTAAATATAGACT 57.915 37.037 0.00 0.00 36.95 3.24
2759 6019 7.942894 TCGATGAGTTGGGAGACTAAATATAGA 59.057 37.037 0.00 0.00 33.15 1.98
2760 6020 8.112016 TCGATGAGTTGGGAGACTAAATATAG 57.888 38.462 0.00 0.00 30.16 1.31
2761 6021 7.176865 CCTCGATGAGTTGGGAGACTAAATATA 59.823 40.741 0.00 0.00 30.16 0.86
2762 6022 6.015010 CCTCGATGAGTTGGGAGACTAAATAT 60.015 42.308 0.00 0.00 30.16 1.28
2766 6483 3.024547 CCTCGATGAGTTGGGAGACTAA 58.975 50.000 0.00 0.00 0.00 2.24
2769 6486 1.134965 CACCTCGATGAGTTGGGAGAC 60.135 57.143 0.00 0.00 0.00 3.36
2773 6490 1.001974 TGAACACCTCGATGAGTTGGG 59.998 52.381 8.12 0.00 0.00 4.12
2774 6491 2.289072 ACTGAACACCTCGATGAGTTGG 60.289 50.000 8.12 0.00 0.00 3.77
2780 6497 3.372206 GGATGAAACTGAACACCTCGATG 59.628 47.826 0.00 0.00 0.00 3.84
2791 6508 4.705110 TGAAGTTGGAGGATGAAACTGA 57.295 40.909 0.00 0.00 34.46 3.41
2792 6509 5.772825 TTTGAAGTTGGAGGATGAAACTG 57.227 39.130 0.00 0.00 34.46 3.16
2793 6510 6.550854 TGATTTTGAAGTTGGAGGATGAAACT 59.449 34.615 0.00 0.00 35.70 2.66
2821 6538 9.712359 GTTTCTAAACTTTTGACGTACAATCTT 57.288 29.630 0.00 0.00 35.89 2.40
2824 6541 7.127686 CGGTTTCTAAACTTTTGACGTACAAT 58.872 34.615 5.62 0.00 37.41 2.71
2831 6548 7.997107 AATTTCCGGTTTCTAAACTTTTGAC 57.003 32.000 0.00 0.00 38.89 3.18
2855 6572 4.243793 TGAAGAAGTGGGAGGACAAAAA 57.756 40.909 0.00 0.00 0.00 1.94
2856 6573 3.943671 TGAAGAAGTGGGAGGACAAAA 57.056 42.857 0.00 0.00 0.00 2.44
2857 6574 3.943671 TTGAAGAAGTGGGAGGACAAA 57.056 42.857 0.00 0.00 0.00 2.83
2858 6575 3.202151 ACTTTGAAGAAGTGGGAGGACAA 59.798 43.478 0.00 0.00 0.00 3.18
2859 6576 2.777692 ACTTTGAAGAAGTGGGAGGACA 59.222 45.455 0.00 0.00 0.00 4.02
2860 6577 3.493767 ACTTTGAAGAAGTGGGAGGAC 57.506 47.619 0.00 0.00 0.00 3.85
2861 6578 4.232091 ACTACTTTGAAGAAGTGGGAGGA 58.768 43.478 7.11 0.00 33.68 3.71
2862 6579 4.625607 ACTACTTTGAAGAAGTGGGAGG 57.374 45.455 7.11 0.00 33.68 4.30
2863 6580 5.582665 GCATACTACTTTGAAGAAGTGGGAG 59.417 44.000 7.11 0.00 33.68 4.30
2864 6581 5.488341 GCATACTACTTTGAAGAAGTGGGA 58.512 41.667 7.11 0.00 33.68 4.37
2865 6582 4.330074 CGCATACTACTTTGAAGAAGTGGG 59.670 45.833 7.11 1.35 33.68 4.61
2866 6583 4.330074 CCGCATACTACTTTGAAGAAGTGG 59.670 45.833 1.89 1.65 35.26 4.00
2867 6584 5.168569 TCCGCATACTACTTTGAAGAAGTG 58.831 41.667 1.89 0.00 0.00 3.16
2868 6585 5.047235 ACTCCGCATACTACTTTGAAGAAGT 60.047 40.000 0.00 0.00 0.00 3.01
2869 6586 5.289675 CACTCCGCATACTACTTTGAAGAAG 59.710 44.000 0.00 0.00 0.00 2.85
2870 6587 5.168569 CACTCCGCATACTACTTTGAAGAA 58.831 41.667 0.00 0.00 0.00 2.52
2871 6588 4.381612 CCACTCCGCATACTACTTTGAAGA 60.382 45.833 0.00 0.00 0.00 2.87
2874 6591 2.829720 ACCACTCCGCATACTACTTTGA 59.170 45.455 0.00 0.00 0.00 2.69
2879 6596 2.667473 ACAACCACTCCGCATACTAC 57.333 50.000 0.00 0.00 0.00 2.73
2880 6597 4.403113 TGATTACAACCACTCCGCATACTA 59.597 41.667 0.00 0.00 0.00 1.82
2881 6598 3.196901 TGATTACAACCACTCCGCATACT 59.803 43.478 0.00 0.00 0.00 2.12
2882 6599 3.527533 TGATTACAACCACTCCGCATAC 58.472 45.455 0.00 0.00 0.00 2.39
2885 6602 2.779755 ATGATTACAACCACTCCGCA 57.220 45.000 0.00 0.00 0.00 5.69
2887 6604 4.759782 AGAGAATGATTACAACCACTCCG 58.240 43.478 0.00 0.00 0.00 4.63
2909 6626 1.539157 AGGCGCTCATCTCGATATGA 58.461 50.000 7.64 12.37 34.72 2.15
2910 6627 3.494045 TTAGGCGCTCATCTCGATATG 57.506 47.619 7.64 4.47 0.00 1.78
2911 6628 4.727507 ATTTAGGCGCTCATCTCGATAT 57.272 40.909 7.64 0.00 0.00 1.63
2912 6629 4.521130 AATTTAGGCGCTCATCTCGATA 57.479 40.909 7.64 0.00 0.00 2.92
2913 6630 3.393089 AATTTAGGCGCTCATCTCGAT 57.607 42.857 7.64 0.00 0.00 3.59
2914 6631 2.890808 AATTTAGGCGCTCATCTCGA 57.109 45.000 7.64 0.00 0.00 4.04
2915 6632 3.557595 AGAAAATTTAGGCGCTCATCTCG 59.442 43.478 7.64 0.00 0.00 4.04
2916 6633 6.604735 TTAGAAAATTTAGGCGCTCATCTC 57.395 37.500 7.64 0.00 0.00 2.75
2917 6634 7.094377 TGTTTTAGAAAATTTAGGCGCTCATCT 60.094 33.333 7.64 0.00 0.00 2.90
2918 6635 7.027161 TGTTTTAGAAAATTTAGGCGCTCATC 58.973 34.615 7.64 0.00 0.00 2.92
2949 6688 6.714356 TCACACACTACATCCATGATTTTTCA 59.286 34.615 0.00 0.00 0.00 2.69
2950 6689 7.144722 TCACACACTACATCCATGATTTTTC 57.855 36.000 0.00 0.00 0.00 2.29
2963 6702 7.034685 ACGTGCTATTATATCACACACTACA 57.965 36.000 6.95 0.00 0.00 2.74
2986 6725 6.548171 TGGAAATGCTTATGCTTACGTTTAC 58.452 36.000 0.00 0.00 40.48 2.01
2988 6727 5.637006 TGGAAATGCTTATGCTTACGTTT 57.363 34.783 0.00 0.00 40.48 3.60
2992 6731 8.652810 ATTTGAATGGAAATGCTTATGCTTAC 57.347 30.769 1.96 0.00 40.48 2.34
2994 6733 9.669887 TTTATTTGAATGGAAATGCTTATGCTT 57.330 25.926 1.96 0.00 40.48 3.91
2995 6734 9.669887 TTTTATTTGAATGGAAATGCTTATGCT 57.330 25.926 1.96 0.00 40.48 3.79
3025 6797 7.511959 AAGTAAGAAACAAGGAAGAATGACC 57.488 36.000 0.00 0.00 0.00 4.02
3051 6823 2.750637 CTGAGCTGCAGGGCTTGG 60.751 66.667 17.12 1.60 43.20 3.61
3059 6831 2.703416 CTCATACCAAACTGAGCTGCA 58.297 47.619 1.02 0.00 33.12 4.41
3064 6836 4.128925 TGCTAGCTCATACCAAACTGAG 57.871 45.455 17.23 0.00 41.47 3.35
3066 6838 8.037166 TGATATATGCTAGCTCATACCAAACTG 58.963 37.037 17.23 0.00 32.36 3.16
3067 6839 8.138928 TGATATATGCTAGCTCATACCAAACT 57.861 34.615 17.23 0.00 32.36 2.66
3070 6842 7.559486 CCTTGATATATGCTAGCTCATACCAA 58.441 38.462 17.23 14.31 32.36 3.67
3072 6844 5.988561 GCCTTGATATATGCTAGCTCATACC 59.011 44.000 17.23 5.01 32.36 2.73
3073 6845 5.988561 GGCCTTGATATATGCTAGCTCATAC 59.011 44.000 17.23 8.43 32.36 2.39
3075 6847 4.472470 TGGCCTTGATATATGCTAGCTCAT 59.528 41.667 17.23 11.20 0.00 2.90
3076 6848 3.840078 TGGCCTTGATATATGCTAGCTCA 59.160 43.478 17.23 7.93 0.00 4.26
3080 6852 4.521146 CCCTTGGCCTTGATATATGCTAG 58.479 47.826 3.32 0.00 0.00 3.42
3081 6853 3.308402 GCCCTTGGCCTTGATATATGCTA 60.308 47.826 3.32 0.00 44.06 3.49
3083 6855 1.821136 GCCCTTGGCCTTGATATATGC 59.179 52.381 3.32 0.00 44.06 3.14
3096 6868 1.152984 TCATGCATACGGCCCTTGG 60.153 57.895 0.00 0.00 43.89 3.61
3097 6869 1.775039 CGTCATGCATACGGCCCTTG 61.775 60.000 16.19 0.00 43.89 3.61
3098 6870 1.523711 CGTCATGCATACGGCCCTT 60.524 57.895 16.19 0.00 43.89 3.95
3099 6871 2.108976 CGTCATGCATACGGCCCT 59.891 61.111 16.19 0.00 43.89 5.19
3104 6876 0.778223 CGATCACCGTCATGCATACG 59.222 55.000 16.73 16.73 40.01 3.06
3105 6877 0.508641 GCGATCACCGTCATGCATAC 59.491 55.000 0.00 0.00 41.15 2.39
3106 6878 0.939106 CGCGATCACCGTCATGCATA 60.939 55.000 0.00 0.00 41.15 3.14
3108 6880 2.272918 TACGCGATCACCGTCATGCA 62.273 55.000 15.93 0.00 39.88 3.96
3109 6881 0.939577 ATACGCGATCACCGTCATGC 60.940 55.000 15.93 0.00 39.88 4.06
3110 6882 0.778223 CATACGCGATCACCGTCATG 59.222 55.000 15.93 9.84 39.88 3.07
3111 6883 0.318699 CCATACGCGATCACCGTCAT 60.319 55.000 15.93 3.05 39.88 3.06
3112 6884 1.065109 CCATACGCGATCACCGTCA 59.935 57.895 15.93 1.12 39.88 4.35
3113 6885 0.039437 ATCCATACGCGATCACCGTC 60.039 55.000 15.93 0.00 39.88 4.79
3114 6886 0.318699 CATCCATACGCGATCACCGT 60.319 55.000 15.93 12.26 42.26 4.83
3115 6887 0.039527 TCATCCATACGCGATCACCG 60.040 55.000 15.93 0.00 42.21 4.94
3116 6888 2.263077 GATCATCCATACGCGATCACC 58.737 52.381 15.93 0.00 35.42 4.02
3117 6889 1.914051 CGATCATCCATACGCGATCAC 59.086 52.381 15.93 0.00 35.11 3.06
3118 6890 1.135402 CCGATCATCCATACGCGATCA 60.135 52.381 15.93 0.00 35.11 2.92
3120 6892 0.888619 ACCGATCATCCATACGCGAT 59.111 50.000 15.93 0.00 0.00 4.58
3121 6893 0.671796 AACCGATCATCCATACGCGA 59.328 50.000 15.93 0.00 0.00 5.87
3122 6894 1.192312 CAAACCGATCATCCATACGCG 59.808 52.381 3.53 3.53 0.00 6.01
3123 6895 2.210116 ACAAACCGATCATCCATACGC 58.790 47.619 0.00 0.00 0.00 4.42
3124 6896 3.717707 AGACAAACCGATCATCCATACG 58.282 45.455 0.00 0.00 0.00 3.06
3126 6898 4.336889 GGAGACAAACCGATCATCCATA 57.663 45.455 0.00 0.00 0.00 2.74
3127 6899 3.199880 GGAGACAAACCGATCATCCAT 57.800 47.619 0.00 0.00 0.00 3.41
3137 6909 1.314730 TTTGAAGCCGGAGACAAACC 58.685 50.000 5.05 0.00 0.00 3.27
3138 6910 2.922335 GCATTTGAAGCCGGAGACAAAC 60.922 50.000 5.05 0.00 35.58 2.93
3139 6911 1.269448 GCATTTGAAGCCGGAGACAAA 59.731 47.619 5.05 13.89 36.82 2.83
3140 6912 0.881118 GCATTTGAAGCCGGAGACAA 59.119 50.000 5.05 4.40 0.00 3.18
3142 6914 0.881118 TTGCATTTGAAGCCGGAGAC 59.119 50.000 5.05 0.00 0.00 3.36
3143 6915 0.881118 GTTGCATTTGAAGCCGGAGA 59.119 50.000 5.05 0.00 0.00 3.71
3144 6916 0.597568 TGTTGCATTTGAAGCCGGAG 59.402 50.000 5.05 0.00 0.00 4.63
3145 6917 0.597568 CTGTTGCATTTGAAGCCGGA 59.402 50.000 5.05 0.00 0.00 5.14
3147 6919 2.138596 AACTGTTGCATTTGAAGCCG 57.861 45.000 0.00 0.00 0.00 5.52
3148 6920 3.622612 ACAAAACTGTTGCATTTGAAGCC 59.377 39.130 14.87 0.00 37.46 4.35
3149 6921 4.093261 ACACAAAACTGTTGCATTTGAAGC 59.907 37.500 14.87 0.00 37.46 3.86
3158 9017 3.375299 AGTCTCTCACACAAAACTGTTGC 59.625 43.478 0.00 0.00 0.00 4.17
3163 9022 4.404073 ACTCTCAGTCTCTCACACAAAACT 59.596 41.667 0.00 0.00 0.00 2.66
3164 9023 4.505922 CACTCTCAGTCTCTCACACAAAAC 59.494 45.833 0.00 0.00 0.00 2.43
3166 9025 3.491619 GCACTCTCAGTCTCTCACACAAA 60.492 47.826 0.00 0.00 0.00 2.83
3168 9027 1.611006 GCACTCTCAGTCTCTCACACA 59.389 52.381 0.00 0.00 0.00 3.72
3169 9028 1.611006 TGCACTCTCAGTCTCTCACAC 59.389 52.381 0.00 0.00 0.00 3.82
3171 9030 2.477694 CGATGCACTCTCAGTCTCTCAC 60.478 54.545 0.00 0.00 0.00 3.51
3172 9031 1.742268 CGATGCACTCTCAGTCTCTCA 59.258 52.381 0.00 0.00 0.00 3.27
3174 9033 1.832883 ACGATGCACTCTCAGTCTCT 58.167 50.000 0.00 0.00 0.00 3.10
3175 9034 2.223386 GGTACGATGCACTCTCAGTCTC 60.223 54.545 0.00 0.00 0.00 3.36
3182 9041 0.249398 GGGTTGGTACGATGCACTCT 59.751 55.000 0.00 0.00 0.00 3.24
3183 9042 0.743345 GGGGTTGGTACGATGCACTC 60.743 60.000 0.00 0.00 0.00 3.51
3184 9043 1.298667 GGGGTTGGTACGATGCACT 59.701 57.895 0.00 0.00 0.00 4.40
3185 9044 1.747745 GGGGGTTGGTACGATGCAC 60.748 63.158 0.00 0.00 0.00 4.57
3186 9045 2.672295 GGGGGTTGGTACGATGCA 59.328 61.111 0.00 0.00 0.00 3.96
3187 9046 2.319890 ATCGGGGGTTGGTACGATGC 62.320 60.000 0.00 0.00 43.55 3.91
3188 9047 1.042229 TATCGGGGGTTGGTACGATG 58.958 55.000 8.47 0.00 44.68 3.84
3189 9048 1.413812 GTTATCGGGGGTTGGTACGAT 59.586 52.381 0.00 0.00 46.42 3.73
3191 9050 0.826062 AGTTATCGGGGGTTGGTACG 59.174 55.000 0.00 0.00 0.00 3.67
3192 9051 3.244318 CCATAGTTATCGGGGGTTGGTAC 60.244 52.174 0.00 0.00 0.00 3.34
3193 9052 2.974099 CCATAGTTATCGGGGGTTGGTA 59.026 50.000 0.00 0.00 0.00 3.25
3194 9053 1.772453 CCATAGTTATCGGGGGTTGGT 59.228 52.381 0.00 0.00 0.00 3.67
3195 9054 2.051692 TCCATAGTTATCGGGGGTTGG 58.948 52.381 0.00 0.00 0.00 3.77
3199 9058 1.724545 TGGTCCATAGTTATCGGGGG 58.275 55.000 0.00 0.00 0.00 5.40
3201 9060 2.027192 CCCATGGTCCATAGTTATCGGG 60.027 54.545 11.73 5.41 0.00 5.14
3202 9061 2.615493 GCCCATGGTCCATAGTTATCGG 60.615 54.545 11.73 0.00 0.00 4.18
3203 9062 2.303022 AGCCCATGGTCCATAGTTATCG 59.697 50.000 11.73 0.00 0.00 2.92
3204 9063 3.560025 CCAGCCCATGGTCCATAGTTATC 60.560 52.174 11.73 0.00 44.91 1.75
3205 9064 2.376518 CCAGCCCATGGTCCATAGTTAT 59.623 50.000 11.73 0.00 44.91 1.89
3206 9065 1.774254 CCAGCCCATGGTCCATAGTTA 59.226 52.381 11.73 0.00 44.91 2.24
3207 9066 0.552848 CCAGCCCATGGTCCATAGTT 59.447 55.000 11.73 0.00 44.91 2.24
3208 9067 2.234586 CCAGCCCATGGTCCATAGT 58.765 57.895 11.73 0.00 44.91 2.12
3226 9085 1.016130 CGGATAGCGGTGGATGCATC 61.016 60.000 18.81 18.81 33.85 3.91
3227 9086 1.004560 CGGATAGCGGTGGATGCAT 60.005 57.895 0.00 0.00 33.85 3.96
3228 9087 2.421314 CGGATAGCGGTGGATGCA 59.579 61.111 0.00 0.00 33.85 3.96
3229 9088 3.044305 GCGGATAGCGGTGGATGC 61.044 66.667 0.00 0.00 35.41 3.91
3239 9098 4.502016 ACATGCTCATAATCTGCGGATAG 58.498 43.478 8.86 3.45 0.00 2.08
3241 9100 3.413846 ACATGCTCATAATCTGCGGAT 57.586 42.857 0.90 0.90 0.00 4.18
3243 9102 2.096565 CGAACATGCTCATAATCTGCGG 60.097 50.000 0.00 0.00 0.00 5.69
3244 9103 2.096565 CCGAACATGCTCATAATCTGCG 60.097 50.000 0.00 0.00 0.00 5.18
3245 9104 3.133691 TCCGAACATGCTCATAATCTGC 58.866 45.455 0.00 0.00 0.00 4.26
3246 9105 5.936686 ATTCCGAACATGCTCATAATCTG 57.063 39.130 0.00 0.00 0.00 2.90
3247 9106 5.471456 GGAATTCCGAACATGCTCATAATCT 59.529 40.000 9.17 0.00 0.00 2.40
3265 9124 2.875933 TCCATTGTTATCGGCGGAATTC 59.124 45.455 7.21 0.00 0.00 2.17
3266 9125 2.616842 GTCCATTGTTATCGGCGGAATT 59.383 45.455 7.21 0.00 0.00 2.17
3268 9127 1.658994 GTCCATTGTTATCGGCGGAA 58.341 50.000 7.21 0.00 0.00 4.30
3269 9128 0.179067 GGTCCATTGTTATCGGCGGA 60.179 55.000 7.21 0.00 0.00 5.54
3270 9129 0.462937 TGGTCCATTGTTATCGGCGG 60.463 55.000 7.21 0.00 0.00 6.13
3271 9130 1.264020 CATGGTCCATTGTTATCGGCG 59.736 52.381 0.00 0.00 0.00 6.46
3272 9131 1.608590 CCATGGTCCATTGTTATCGGC 59.391 52.381 2.57 0.00 0.00 5.54
3273 9132 2.229792 CCCATGGTCCATTGTTATCGG 58.770 52.381 11.73 0.00 0.00 4.18
3274 9133 1.608590 GCCCATGGTCCATTGTTATCG 59.391 52.381 11.73 0.00 0.00 2.92
3275 9134 2.624838 CAGCCCATGGTCCATTGTTATC 59.375 50.000 11.73 0.00 0.00 1.75
3276 9135 2.669781 CAGCCCATGGTCCATTGTTAT 58.330 47.619 11.73 0.00 0.00 1.89
3277 9136 1.341877 CCAGCCCATGGTCCATTGTTA 60.342 52.381 11.73 0.00 44.91 2.41
3278 9137 0.615544 CCAGCCCATGGTCCATTGTT 60.616 55.000 11.73 0.00 44.91 2.83
3279 9138 1.000739 CCAGCCCATGGTCCATTGT 59.999 57.895 11.73 0.00 44.91 2.71
3280 9139 3.944123 CCAGCCCATGGTCCATTG 58.056 61.111 11.73 0.00 44.91 2.82
3288 9147 0.387929 GTGAATGCATCCAGCCCATG 59.612 55.000 0.00 0.00 44.83 3.66
3289 9148 0.757935 GGTGAATGCATCCAGCCCAT 60.758 55.000 3.38 0.00 44.83 4.00
3293 9152 0.815213 TAGCGGTGAATGCATCCAGC 60.815 55.000 4.86 4.86 45.96 4.85
3294 9153 1.802960 GATAGCGGTGAATGCATCCAG 59.197 52.381 0.00 0.00 33.85 3.86
3295 9154 1.543208 GGATAGCGGTGAATGCATCCA 60.543 52.381 0.00 0.00 38.63 3.41
3297 9156 0.792640 CGGATAGCGGTGAATGCATC 59.207 55.000 0.00 0.00 33.85 3.91
3298 9157 1.230635 GCGGATAGCGGTGAATGCAT 61.231 55.000 0.00 0.00 35.41 3.96
3300 9159 2.939022 GCGGATAGCGGTGAATGC 59.061 61.111 0.00 0.00 35.41 3.56
3310 9169 3.056250 ACAGGCTCATAATCTGCGGATAG 60.056 47.826 8.86 3.45 32.19 2.08
3311 9170 2.899900 ACAGGCTCATAATCTGCGGATA 59.100 45.455 8.86 0.00 32.19 2.59
3312 9171 1.696336 ACAGGCTCATAATCTGCGGAT 59.304 47.619 0.90 0.90 32.19 4.18
3313 9172 1.123077 ACAGGCTCATAATCTGCGGA 58.877 50.000 0.00 0.00 32.19 5.54
3314 9173 1.869767 GAACAGGCTCATAATCTGCGG 59.130 52.381 0.00 0.00 32.19 5.69
3315 9174 1.524355 CGAACAGGCTCATAATCTGCG 59.476 52.381 0.00 0.00 32.19 5.18
3316 9175 1.869767 CCGAACAGGCTCATAATCTGC 59.130 52.381 0.00 0.00 32.19 4.26
3317 9176 3.459232 TCCGAACAGGCTCATAATCTG 57.541 47.619 0.00 0.00 40.77 2.90
3318 9177 4.696479 ATTCCGAACAGGCTCATAATCT 57.304 40.909 0.00 0.00 40.77 2.40
3319 9178 4.214332 GGAATTCCGAACAGGCTCATAATC 59.786 45.833 9.17 0.00 40.77 1.75
3320 9179 4.137543 GGAATTCCGAACAGGCTCATAAT 58.862 43.478 9.17 0.00 40.77 1.28
3321 9180 3.541632 GGAATTCCGAACAGGCTCATAA 58.458 45.455 9.17 0.00 40.77 1.90
3323 9182 2.044123 GGAATTCCGAACAGGCTCAT 57.956 50.000 9.17 0.00 40.77 2.90
3335 9194 1.649267 GCGAAGATGGCGGAATTCC 59.351 57.895 15.01 15.01 0.00 3.01
3344 9203 2.321213 GGGGATTTCGCGAAGATGG 58.679 57.895 22.21 0.00 0.00 3.51
3352 9211 2.897350 CAGCTCCGGGGATTTCGC 60.897 66.667 4.80 0.00 0.00 4.70
3353 9212 2.897350 GCAGCTCCGGGGATTTCG 60.897 66.667 4.80 0.00 0.00 3.46
3354 9213 2.897350 CGCAGCTCCGGGGATTTC 60.897 66.667 4.80 0.00 0.00 2.17
3368 9227 4.399395 CTGCTTCCTGGCTCCGCA 62.399 66.667 0.00 0.00 0.00 5.69
3370 9229 3.907260 TTGCTGCTTCCTGGCTCCG 62.907 63.158 0.00 0.00 0.00 4.63
3371 9230 2.034687 TTGCTGCTTCCTGGCTCC 59.965 61.111 0.00 0.00 0.00 4.70
3372 9231 1.303155 AGTTGCTGCTTCCTGGCTC 60.303 57.895 0.00 0.00 0.00 4.70
3373 9232 1.303155 GAGTTGCTGCTTCCTGGCT 60.303 57.895 0.00 0.00 0.00 4.75
3374 9233 2.338785 GGAGTTGCTGCTTCCTGGC 61.339 63.158 0.00 0.00 0.00 4.85
3375 9234 1.073722 TGGAGTTGCTGCTTCCTGG 59.926 57.895 15.66 0.00 0.00 4.45
3376 9235 1.572085 CGTGGAGTTGCTGCTTCCTG 61.572 60.000 15.66 7.80 0.00 3.86
3377 9236 1.302033 CGTGGAGTTGCTGCTTCCT 60.302 57.895 15.66 3.68 0.00 3.36
3378 9237 0.674895 ATCGTGGAGTTGCTGCTTCC 60.675 55.000 0.00 6.35 0.00 3.46
3379 9238 1.160137 AATCGTGGAGTTGCTGCTTC 58.840 50.000 0.00 0.00 0.00 3.86
3380 9239 1.609208 AAATCGTGGAGTTGCTGCTT 58.391 45.000 0.00 0.00 0.00 3.91
3381 9240 1.537202 GAAAATCGTGGAGTTGCTGCT 59.463 47.619 0.00 0.00 0.00 4.24
3382 9241 1.266718 TGAAAATCGTGGAGTTGCTGC 59.733 47.619 0.00 0.00 0.00 5.25
3383 9242 3.243035 TGTTGAAAATCGTGGAGTTGCTG 60.243 43.478 0.00 0.00 0.00 4.41
3385 9244 3.243068 ACTGTTGAAAATCGTGGAGTTGC 60.243 43.478 0.00 0.00 0.00 4.17
3386 9245 4.552166 ACTGTTGAAAATCGTGGAGTTG 57.448 40.909 0.00 0.00 0.00 3.16
3387 9246 5.820947 AGTTACTGTTGAAAATCGTGGAGTT 59.179 36.000 0.00 0.00 0.00 3.01
3389 9248 5.107065 GGAGTTACTGTTGAAAATCGTGGAG 60.107 44.000 0.00 0.00 0.00 3.86
3390 9249 4.753107 GGAGTTACTGTTGAAAATCGTGGA 59.247 41.667 0.00 0.00 0.00 4.02
3391 9250 4.513692 TGGAGTTACTGTTGAAAATCGTGG 59.486 41.667 0.00 0.00 0.00 4.94
3392 9251 5.666969 TGGAGTTACTGTTGAAAATCGTG 57.333 39.130 0.00 0.00 0.00 4.35
3393 9252 4.213482 GCTGGAGTTACTGTTGAAAATCGT 59.787 41.667 0.00 0.00 0.00 3.73
3394 9253 4.378459 GGCTGGAGTTACTGTTGAAAATCG 60.378 45.833 0.00 0.00 0.00 3.34
3396 9255 3.502211 CGGCTGGAGTTACTGTTGAAAAT 59.498 43.478 0.00 0.00 0.00 1.82
3397 9256 2.875933 CGGCTGGAGTTACTGTTGAAAA 59.124 45.455 0.00 0.00 0.00 2.29
3398 9257 2.489971 CGGCTGGAGTTACTGTTGAAA 58.510 47.619 0.00 0.00 0.00 2.69
3399 9258 1.876416 GCGGCTGGAGTTACTGTTGAA 60.876 52.381 0.00 0.00 0.00 2.69
3404 9263 1.153549 GGAGCGGCTGGAGTTACTG 60.154 63.158 7.50 0.00 0.00 2.74
3405 9264 2.711922 CGGAGCGGCTGGAGTTACT 61.712 63.158 7.50 0.00 0.00 2.24
3406 9265 2.202756 CGGAGCGGCTGGAGTTAC 60.203 66.667 7.50 0.00 0.00 2.50
3407 9266 3.458163 CCGGAGCGGCTGGAGTTA 61.458 66.667 7.50 0.00 46.81 2.24
3413 9272 3.905678 CTACTCCCGGAGCGGCTG 61.906 72.222 14.86 0.00 46.86 4.85
3414 9273 4.124943 TCTACTCCCGGAGCGGCT 62.125 66.667 14.86 0.00 46.86 5.52
3415 9274 3.597728 CTCTACTCCCGGAGCGGC 61.598 72.222 14.86 0.00 46.86 6.53
3417 9276 1.313812 ACAACTCTACTCCCGGAGCG 61.314 60.000 14.86 6.19 32.04 5.03
3419 9278 0.818296 CCACAACTCTACTCCCGGAG 59.182 60.000 13.31 13.31 35.52 4.63
3420 9279 1.255667 GCCACAACTCTACTCCCGGA 61.256 60.000 0.73 0.00 0.00 5.14
3422 9281 1.153823 CGCCACAACTCTACTCCCG 60.154 63.158 0.00 0.00 0.00 5.14
3423 9282 1.448013 GCGCCACAACTCTACTCCC 60.448 63.158 0.00 0.00 0.00 4.30
3425 9284 1.805945 CCGCGCCACAACTCTACTC 60.806 63.158 0.00 0.00 0.00 2.59
3426 9285 2.214181 CTCCGCGCCACAACTCTACT 62.214 60.000 0.00 0.00 0.00 2.57
3428 9287 2.571757 CTCCGCGCCACAACTCTA 59.428 61.111 0.00 0.00 0.00 2.43
3429 9288 4.379243 CCTCCGCGCCACAACTCT 62.379 66.667 0.00 0.00 0.00 3.24
3430 9289 4.681978 ACCTCCGCGCCACAACTC 62.682 66.667 0.00 0.00 0.00 3.01
3431 9290 4.681978 GACCTCCGCGCCACAACT 62.682 66.667 0.00 0.00 0.00 3.16
3445 9304 1.335132 TATGCCCTGTTCGGAGGACC 61.335 60.000 0.00 0.00 34.69 4.46
3446 9305 0.759346 ATATGCCCTGTTCGGAGGAC 59.241 55.000 0.00 0.00 34.69 3.85
3448 9307 6.459066 CATATATATATGCCCTGTTCGGAGG 58.541 44.000 17.65 0.00 34.37 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.