Multiple sequence alignment - TraesCS3B01G487600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G487600 chr3B 100.000 2904 0 0 1 2904 733627622 733630525 0.000000e+00 5363
1 TraesCS3B01G487600 chr3B 81.170 940 107 32 1003 1910 733574031 733574932 0.000000e+00 691
2 TraesCS3B01G487600 chr3D 91.184 2972 150 48 1 2904 552781372 552784299 0.000000e+00 3934
3 TraesCS3B01G487600 chr3A 90.032 2177 113 34 1 2127 689110908 689113030 0.000000e+00 2723
4 TraesCS3B01G487600 chr3A 91.785 706 46 9 2207 2904 689113030 689113731 0.000000e+00 972
5 TraesCS3B01G487600 chr1D 83.222 900 114 24 1003 1893 395559590 395558719 0.000000e+00 791
6 TraesCS3B01G487600 chr1D 86.122 245 17 8 672 914 460183214 460182985 6.210000e-62 248
7 TraesCS3B01G487600 chr1A 82.816 902 122 21 1003 1897 489601196 489600321 0.000000e+00 776
8 TraesCS3B01G487600 chr7D 82.565 889 109 26 1003 1877 573898063 573898919 0.000000e+00 741
9 TraesCS3B01G487600 chr7D 83.333 144 9 10 1741 1881 573905459 573905590 5.080000e-23 119
10 TraesCS3B01G487600 chr1B 81.897 917 120 26 1003 1897 526348896 526348004 0.000000e+00 732
11 TraesCS3B01G487600 chr7B 83.808 772 88 19 1003 1766 632684677 632685419 0.000000e+00 699
12 TraesCS3B01G487600 chr7B 83.333 144 9 10 1741 1881 632688440 632688571 5.080000e-23 119
13 TraesCS3B01G487600 chr2B 76.545 793 132 28 1003 1753 759274379 759273599 4.540000e-103 385
14 TraesCS3B01G487600 chr5D 88.235 187 13 5 2295 2478 67965704 67965524 6.300000e-52 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G487600 chr3B 733627622 733630525 2903 False 5363.0 5363 100.0000 1 2904 1 chr3B.!!$F2 2903
1 TraesCS3B01G487600 chr3B 733574031 733574932 901 False 691.0 691 81.1700 1003 1910 1 chr3B.!!$F1 907
2 TraesCS3B01G487600 chr3D 552781372 552784299 2927 False 3934.0 3934 91.1840 1 2904 1 chr3D.!!$F1 2903
3 TraesCS3B01G487600 chr3A 689110908 689113731 2823 False 1847.5 2723 90.9085 1 2904 2 chr3A.!!$F1 2903
4 TraesCS3B01G487600 chr1D 395558719 395559590 871 True 791.0 791 83.2220 1003 1893 1 chr1D.!!$R1 890
5 TraesCS3B01G487600 chr1A 489600321 489601196 875 True 776.0 776 82.8160 1003 1897 1 chr1A.!!$R1 894
6 TraesCS3B01G487600 chr7D 573898063 573898919 856 False 741.0 741 82.5650 1003 1877 1 chr7D.!!$F1 874
7 TraesCS3B01G487600 chr1B 526348004 526348896 892 True 732.0 732 81.8970 1003 1897 1 chr1B.!!$R1 894
8 TraesCS3B01G487600 chr7B 632684677 632688571 3894 False 409.0 699 83.5705 1003 1881 2 chr7B.!!$F1 878
9 TraesCS3B01G487600 chr2B 759273599 759274379 780 True 385.0 385 76.5450 1003 1753 1 chr2B.!!$R1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
915 970 0.317479 CTCCGTCCTCTTTTCACCGT 59.683 55.0 0.0 0.0 0.0 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2700 4365 1.667724 GCATGTCAGCATCACACTACC 59.332 52.381 0.0 0.0 31.99 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 4.444449 GGACAGGTTAAGGAACACAACTCT 60.444 45.833 0.00 0.00 37.29 3.24
92 93 4.406003 AGGAACACAACTCTTACACACTCT 59.594 41.667 0.00 0.00 0.00 3.24
97 98 7.233389 ACACAACTCTTACACACTCTATGAT 57.767 36.000 0.00 0.00 0.00 2.45
140 141 0.784778 GTCGGTCGAAACTGAAGCTG 59.215 55.000 0.00 0.00 42.41 4.24
143 144 1.673033 CGGTCGAAACTGAAGCTGGAT 60.673 52.381 0.00 0.00 33.20 3.41
196 197 2.604174 GGACAGTGCCACCGAAACG 61.604 63.158 0.00 0.00 0.00 3.60
200 201 1.153329 AGTGCCACCGAAACGAACA 60.153 52.632 0.00 0.00 0.00 3.18
201 202 1.010462 GTGCCACCGAAACGAACAC 60.010 57.895 0.00 0.00 0.00 3.32
245 249 3.009584 GGAGAACCAGATCAAGGGAAACT 59.990 47.826 8.82 2.97 35.97 2.66
294 299 0.813210 CGAGAATGAGCCAGGGAAGC 60.813 60.000 0.00 0.00 0.00 3.86
298 303 1.212935 GAATGAGCCAGGGAAGCCTTA 59.787 52.381 0.00 0.00 0.00 2.69
324 329 2.021457 TGTTCGACGATAGCTCCATCA 58.979 47.619 0.00 0.00 42.67 3.07
327 332 0.386100 CGACGATAGCTCCATCACCG 60.386 60.000 0.00 0.00 42.67 4.94
348 353 0.320421 ACCACCGACGACAAAGGATG 60.320 55.000 0.00 0.00 0.00 3.51
389 394 1.878522 GCTACCAGCATCGACACGG 60.879 63.158 0.00 0.00 41.89 4.94
393 398 2.100631 CCAGCATCGACACGGAACC 61.101 63.158 0.00 0.00 0.00 3.62
394 399 2.126071 AGCATCGACACGGAACCG 60.126 61.111 11.83 11.83 46.03 4.44
419 424 5.003096 AGATCCTTGTCCCTTTTCATTGT 57.997 39.130 0.00 0.00 0.00 2.71
442 447 0.322546 GGTGGCGAATGGAGAAAGGT 60.323 55.000 0.00 0.00 0.00 3.50
477 483 1.628846 GAGCTTGTTGGGAGGAGGTAA 59.371 52.381 0.00 0.00 0.00 2.85
489 495 3.432326 GGAGGAGGTAAATCAGCGATGTT 60.432 47.826 0.00 0.00 0.00 2.71
657 672 8.882415 ATATGGCTTGACATTTTGATTTCATC 57.118 30.769 0.00 0.00 32.39 2.92
668 711 4.712122 TTGATTTCATCGTAAAAGCCCC 57.288 40.909 0.00 0.00 0.00 5.80
669 712 2.680841 TGATTTCATCGTAAAAGCCCCG 59.319 45.455 0.00 0.00 0.00 5.73
670 713 1.455248 TTTCATCGTAAAAGCCCCGG 58.545 50.000 0.00 0.00 0.00 5.73
671 714 0.614294 TTCATCGTAAAAGCCCCGGA 59.386 50.000 0.73 0.00 0.00 5.14
734 777 3.018856 TGCTATTCATCTGCCACCTTTG 58.981 45.455 0.00 0.00 0.00 2.77
735 778 3.019564 GCTATTCATCTGCCACCTTTGT 58.980 45.455 0.00 0.00 0.00 2.83
736 779 3.065925 GCTATTCATCTGCCACCTTTGTC 59.934 47.826 0.00 0.00 0.00 3.18
737 780 1.909700 TTCATCTGCCACCTTTGTCC 58.090 50.000 0.00 0.00 0.00 4.02
760 803 5.107760 CCAAATTTCTGAAATTGCACGTCTG 60.108 40.000 24.51 17.38 40.05 3.51
801 844 2.989253 CCACCCCGGTCAAAAGGC 60.989 66.667 0.00 0.00 0.00 4.35
872 927 1.556911 GATTGCCCTGACTCTCTCCAA 59.443 52.381 0.00 0.00 0.00 3.53
878 933 1.691434 CCTGACTCTCTCCAATAGCCC 59.309 57.143 0.00 0.00 0.00 5.19
914 969 0.389948 CCTCCGTCCTCTTTTCACCG 60.390 60.000 0.00 0.00 0.00 4.94
915 970 0.317479 CTCCGTCCTCTTTTCACCGT 59.683 55.000 0.00 0.00 0.00 4.83
916 971 1.542915 CTCCGTCCTCTTTTCACCGTA 59.457 52.381 0.00 0.00 0.00 4.02
918 973 1.670967 CCGTCCTCTTTTCACCGTACC 60.671 57.143 0.00 0.00 0.00 3.34
919 974 1.670967 CGTCCTCTTTTCACCGTACCC 60.671 57.143 0.00 0.00 0.00 3.69
977 1034 2.244769 CCTTTCTCTCCTCTCCTCTCCT 59.755 54.545 0.00 0.00 0.00 3.69
978 1035 3.555966 CTTTCTCTCCTCTCCTCTCCTC 58.444 54.545 0.00 0.00 0.00 3.71
979 1036 2.587060 TCTCTCCTCTCCTCTCCTCT 57.413 55.000 0.00 0.00 0.00 3.69
980 1037 2.408565 TCTCTCCTCTCCTCTCCTCTC 58.591 57.143 0.00 0.00 0.00 3.20
981 1038 1.421646 CTCTCCTCTCCTCTCCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
982 1039 1.010793 TCTCCTCTCCTCTCCTCTCCT 59.989 57.143 0.00 0.00 0.00 3.69
983 1040 1.421646 CTCCTCTCCTCTCCTCTCCTC 59.578 61.905 0.00 0.00 0.00 3.71
1018 1075 2.369633 ATGGCCATGGCGAGACAGA 61.370 57.895 29.90 8.11 43.06 3.41
1224 1287 0.627451 TCTACTACCTCGGCCTGGAA 59.373 55.000 17.14 1.12 0.00 3.53
1332 1398 1.644372 CGACGAGCAGCTCTACGAT 59.356 57.895 24.19 6.11 32.24 3.73
1674 1811 1.738099 GAAGCACATCGACCACGCT 60.738 57.895 0.00 0.00 39.58 5.07
1962 2148 2.561419 GGGATCCCATGAATTGCTGATG 59.439 50.000 26.95 0.00 35.81 3.07
2096 2282 6.265649 GTCCTTCAGACTAACCTGCTCATATA 59.734 42.308 0.00 0.00 42.69 0.86
2128 2323 2.926200 CCGGATGCAATCTATCTTAGCG 59.074 50.000 0.00 0.00 44.71 4.26
2221 2422 2.219674 CGAATCGAATTGCAGGAGCTAC 59.780 50.000 0.00 0.00 42.74 3.58
2224 2425 0.179111 CGAATTGCAGGAGCTACCGA 60.179 55.000 0.00 0.00 44.74 4.69
2313 2520 5.976534 TGCATCTGTTGTGTGTTTTAATCAC 59.023 36.000 0.00 0.00 36.48 3.06
2358 2648 6.201044 CCATGTTTGGTAATCTTCGTAGCTAG 59.799 42.308 0.00 0.00 38.30 3.42
2360 2650 7.395190 TGTTTGGTAATCTTCGTAGCTAGTA 57.605 36.000 0.00 0.00 0.00 1.82
2361 2651 7.253422 TGTTTGGTAATCTTCGTAGCTAGTAC 58.747 38.462 0.00 0.00 0.00 2.73
2362 2652 7.094248 TGTTTGGTAATCTTCGTAGCTAGTACA 60.094 37.037 0.00 0.00 0.00 2.90
2432 2723 2.162681 GTCCCTGTTCATCCAAACCTG 58.837 52.381 0.00 0.00 0.00 4.00
2433 2724 1.075374 TCCCTGTTCATCCAAACCTGG 59.925 52.381 0.00 0.00 45.08 4.45
2447 2793 2.200373 ACCTGGTGCCTAATTGTGTC 57.800 50.000 0.00 0.00 0.00 3.67
2475 4140 0.982852 TGGTGGCCTGATGTCCCTAG 60.983 60.000 3.32 0.00 0.00 3.02
2498 4163 5.013183 AGTTAATGTGCCTGAAGGTAGAACT 59.987 40.000 0.00 0.00 37.57 3.01
2507 4172 4.338682 CCTGAAGGTAGAACTAGCGTACAT 59.661 45.833 5.58 0.00 38.49 2.29
2510 4175 4.650754 AGGTAGAACTAGCGTACATTGG 57.349 45.455 5.58 0.00 38.49 3.16
2540 4205 3.056678 TGCATTGTTGATCAAAGCCGATT 60.057 39.130 10.35 0.00 46.18 3.34
2555 4220 7.121168 TCAAAGCCGATTGAGTTCTTATCAATT 59.879 33.333 2.97 0.00 45.15 2.32
2600 4265 5.473066 AGTTCATCCAACCTTTTGATTGG 57.527 39.130 0.00 0.00 45.78 3.16
2612 4277 7.158099 ACCTTTTGATTGGTATCAGTTAAGC 57.842 36.000 0.00 0.00 41.60 3.09
2616 4281 7.994425 TTTGATTGGTATCAGTTAAGCTTGA 57.006 32.000 9.86 0.00 41.60 3.02
2621 4286 5.118990 TGGTATCAGTTAAGCTTGATCTGC 58.881 41.667 9.86 0.00 0.00 4.26
2657 4322 9.477484 CGCTACTATATCTGTGTTTAATTTCCT 57.523 33.333 0.00 0.00 0.00 3.36
2661 4326 9.838339 ACTATATCTGTGTTTAATTTCCTGAGG 57.162 33.333 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 5.190677 TCGACCTCATCATAGAGTGTGTAA 58.809 41.667 0.00 0.00 33.75 2.41
92 93 3.958147 TGGCTAACTTCGACCTCATCATA 59.042 43.478 0.00 0.00 0.00 2.15
97 98 1.001633 GGTTGGCTAACTTCGACCTCA 59.998 52.381 13.03 0.00 36.99 3.86
140 141 4.582701 TGATTGTGTGTTTTGGTCATCC 57.417 40.909 0.00 0.00 0.00 3.51
143 144 3.492309 GGCATGATTGTGTGTTTTGGTCA 60.492 43.478 0.00 0.00 0.00 4.02
223 227 3.009584 AGTTTCCCTTGATCTGGTTCTCC 59.990 47.826 0.00 0.00 0.00 3.71
224 228 4.257731 GAGTTTCCCTTGATCTGGTTCTC 58.742 47.826 0.00 0.14 0.00 2.87
245 249 0.741915 GTTTTGCGTTGTTGGGAGGA 59.258 50.000 0.00 0.00 0.00 3.71
294 299 2.933495 TCGTCGAACATGGAGTAAGG 57.067 50.000 0.00 0.00 0.00 2.69
298 303 2.025155 AGCTATCGTCGAACATGGAGT 58.975 47.619 0.00 0.00 0.00 3.85
327 332 2.604174 CCTTTGTCGTCGGTGGTGC 61.604 63.158 0.00 0.00 0.00 5.01
378 383 0.733566 TAACGGTTCCGTGTCGATGC 60.734 55.000 17.59 0.00 42.15 3.91
389 394 2.500504 AGGGACAAGGATCTAACGGTTC 59.499 50.000 0.00 0.00 0.00 3.62
393 398 4.575885 TGAAAAGGGACAAGGATCTAACG 58.424 43.478 0.00 0.00 0.00 3.18
394 399 6.434340 ACAATGAAAAGGGACAAGGATCTAAC 59.566 38.462 0.00 0.00 0.00 2.34
396 401 5.945784 CACAATGAAAAGGGACAAGGATCTA 59.054 40.000 0.00 0.00 0.00 1.98
399 404 3.834231 CCACAATGAAAAGGGACAAGGAT 59.166 43.478 0.00 0.00 0.00 3.24
403 408 3.230134 CCTCCACAATGAAAAGGGACAA 58.770 45.455 0.00 0.00 0.00 3.18
419 424 1.198094 TTCTCCATTCGCCACCTCCA 61.198 55.000 0.00 0.00 0.00 3.86
462 468 2.026262 GCTGATTTACCTCCTCCCAACA 60.026 50.000 0.00 0.00 0.00 3.33
477 483 2.977914 AGTAGCACAACATCGCTGATT 58.022 42.857 0.00 0.00 39.30 2.57
489 495 1.028330 CGGACGGAGGTAGTAGCACA 61.028 60.000 1.58 0.00 0.00 4.57
631 646 9.321562 GATGAAATCAAAATGTCAAGCCATATT 57.678 29.630 0.00 0.00 44.70 1.28
637 652 7.795431 TTACGATGAAATCAAAATGTCAAGC 57.205 32.000 0.00 0.00 45.97 4.01
641 656 7.201435 GGGCTTTTACGATGAAATCAAAATGTC 60.201 37.037 0.00 0.00 45.97 3.06
654 669 0.177141 TCTCCGGGGCTTTTACGATG 59.823 55.000 0.00 0.00 0.00 3.84
655 670 0.464452 CTCTCCGGGGCTTTTACGAT 59.536 55.000 0.00 0.00 0.00 3.73
656 671 0.612732 TCTCTCCGGGGCTTTTACGA 60.613 55.000 0.00 0.00 0.00 3.43
657 672 0.179108 CTCTCTCCGGGGCTTTTACG 60.179 60.000 0.00 0.00 0.00 3.18
668 711 1.131504 CGTGAAACCTCTCTCTCTCCG 59.868 57.143 0.00 0.00 0.00 4.63
669 712 1.474879 CCGTGAAACCTCTCTCTCTCC 59.525 57.143 0.00 0.00 0.00 3.71
670 713 2.164338 ACCGTGAAACCTCTCTCTCTC 58.836 52.381 0.00 0.00 0.00 3.20
671 714 2.296073 ACCGTGAAACCTCTCTCTCT 57.704 50.000 0.00 0.00 0.00 3.10
734 777 4.744631 ACGTGCAATTTCAGAAATTTGGAC 59.255 37.500 17.12 19.20 40.61 4.02
735 778 4.942852 ACGTGCAATTTCAGAAATTTGGA 58.057 34.783 17.12 11.64 38.97 3.53
736 779 4.984161 AGACGTGCAATTTCAGAAATTTGG 59.016 37.500 17.12 9.38 38.97 3.28
737 780 5.107760 CCAGACGTGCAATTTCAGAAATTTG 60.108 40.000 17.12 13.55 38.97 2.32
760 803 1.076485 TCCCTCCGCTACCACTACC 60.076 63.158 0.00 0.00 0.00 3.18
801 844 2.661537 TCAGCCTGCACGTTGACG 60.662 61.111 1.41 1.41 46.33 4.35
859 914 1.691434 GGGGCTATTGGAGAGAGTCAG 59.309 57.143 0.00 0.00 0.00 3.51
860 915 1.292242 AGGGGCTATTGGAGAGAGTCA 59.708 52.381 0.00 0.00 0.00 3.41
861 916 1.967779 GAGGGGCTATTGGAGAGAGTC 59.032 57.143 0.00 0.00 0.00 3.36
862 917 1.755977 CGAGGGGCTATTGGAGAGAGT 60.756 57.143 0.00 0.00 0.00 3.24
863 918 0.965439 CGAGGGGCTATTGGAGAGAG 59.035 60.000 0.00 0.00 0.00 3.20
864 919 0.556258 TCGAGGGGCTATTGGAGAGA 59.444 55.000 0.00 0.00 0.00 3.10
865 920 0.676736 GTCGAGGGGCTATTGGAGAG 59.323 60.000 0.00 0.00 0.00 3.20
866 921 0.032515 TGTCGAGGGGCTATTGGAGA 60.033 55.000 0.00 0.00 0.00 3.71
867 922 0.105039 GTGTCGAGGGGCTATTGGAG 59.895 60.000 0.00 0.00 0.00 3.86
872 927 3.077519 GCACGTGTCGAGGGGCTAT 62.078 63.158 18.38 0.00 0.00 2.97
896 951 0.317479 ACGGTGAAAAGAGGACGGAG 59.683 55.000 0.00 0.00 0.00 4.63
930 985 3.642778 TTTCCGAAGAGGCGAGCGG 62.643 63.158 0.00 0.00 44.83 5.52
977 1034 0.677098 CGGAGGTGAGTTCGAGGAGA 60.677 60.000 0.00 0.00 0.00 3.71
978 1035 1.803943 CGGAGGTGAGTTCGAGGAG 59.196 63.158 0.00 0.00 0.00 3.69
979 1036 3.998156 CGGAGGTGAGTTCGAGGA 58.002 61.111 0.00 0.00 0.00 3.71
1018 1075 1.661463 TCCAGGTCCTTCTTGCTCAT 58.339 50.000 0.00 0.00 0.00 2.90
1674 1811 2.675423 CGGGAGAGGACGGTGACA 60.675 66.667 0.00 0.00 0.00 3.58
1949 2135 5.364446 TGGCTTAATTCCATCAGCAATTCAT 59.636 36.000 0.00 0.00 33.64 2.57
1962 2148 4.984146 AGGAGGAGTATGGCTTAATTCC 57.016 45.455 4.81 4.81 0.00 3.01
2096 2282 4.774726 AGATTGCATCCGGATCATAGTAGT 59.225 41.667 15.88 0.00 0.00 2.73
2157 2358 5.475564 TGCAGTCAACATCACACTACTACTA 59.524 40.000 0.00 0.00 0.00 1.82
2221 2422 2.004583 TCGGCATTGAACTAGTTCGG 57.995 50.000 26.35 19.80 42.28 4.30
2224 2425 2.744202 CAGCTTCGGCATTGAACTAGTT 59.256 45.455 8.13 8.13 44.74 2.24
2313 2520 8.812147 ACATGGTAGTAACATCACATATAACG 57.188 34.615 0.00 0.00 0.00 3.18
2328 2618 6.938507 ACGAAGATTACCAAACATGGTAGTA 58.061 36.000 7.69 0.00 44.32 1.82
2358 2648 5.105917 CCAGTCCCAAATAACCAACATGTAC 60.106 44.000 0.00 0.00 0.00 2.90
2360 2650 3.831911 CCAGTCCCAAATAACCAACATGT 59.168 43.478 0.00 0.00 0.00 3.21
2361 2651 3.195396 CCCAGTCCCAAATAACCAACATG 59.805 47.826 0.00 0.00 0.00 3.21
2362 2652 3.076785 TCCCAGTCCCAAATAACCAACAT 59.923 43.478 0.00 0.00 0.00 2.71
2432 2723 5.125417 ACACATAATGACACAATTAGGCACC 59.875 40.000 0.00 0.00 29.06 5.01
2433 2724 6.029607 CACACATAATGACACAATTAGGCAC 58.970 40.000 0.00 0.00 29.06 5.01
2447 2793 2.127271 TCAGGCCACCACACATAATG 57.873 50.000 5.01 0.00 0.00 1.90
2475 4140 5.246307 AGTTCTACCTTCAGGCACATTAAC 58.754 41.667 0.00 0.00 39.32 2.01
2498 4163 3.187637 GCAACTGAAACCAATGTACGCTA 59.812 43.478 0.00 0.00 0.00 4.26
2507 4172 4.462508 TCAACAATGCAACTGAAACCAA 57.537 36.364 6.19 0.00 0.00 3.67
2510 4175 6.586868 TTTGATCAACAATGCAACTGAAAC 57.413 33.333 7.89 0.66 38.36 2.78
2571 4236 5.428184 AAAGGTTGGATGAACTAGAGAGG 57.572 43.478 0.00 0.00 34.66 3.69
2600 4265 6.857777 ATGCAGATCAAGCTTAACTGATAC 57.142 37.500 22.20 10.88 0.00 2.24
2621 4286 6.694844 CACAGATATAGTAGCGGCAGATTATG 59.305 42.308 1.45 0.00 0.00 1.90
2631 4296 9.477484 AGGAAATTAAACACAGATATAGTAGCG 57.523 33.333 0.00 0.00 0.00 4.26
2657 4322 6.494666 AATTAAGAATATCCACGGTCCTCA 57.505 37.500 0.00 0.00 0.00 3.86
2661 4326 7.964604 AGCTAAATTAAGAATATCCACGGTC 57.035 36.000 0.00 0.00 0.00 4.79
2692 4357 4.466015 TCAGCATCACACTACCAGATTACA 59.534 41.667 0.00 0.00 0.00 2.41
2693 4358 4.806247 GTCAGCATCACACTACCAGATTAC 59.194 45.833 0.00 0.00 0.00 1.89
2695 4360 3.261643 TGTCAGCATCACACTACCAGATT 59.738 43.478 0.00 0.00 0.00 2.40
2696 4361 2.833943 TGTCAGCATCACACTACCAGAT 59.166 45.455 0.00 0.00 0.00 2.90
2697 4362 2.247358 TGTCAGCATCACACTACCAGA 58.753 47.619 0.00 0.00 0.00 3.86
2698 4363 2.749280 TGTCAGCATCACACTACCAG 57.251 50.000 0.00 0.00 0.00 4.00
2700 4365 1.667724 GCATGTCAGCATCACACTACC 59.332 52.381 0.00 0.00 31.99 3.18
2728 4393 1.726853 GATTCGGTTGTCCCACAGAG 58.273 55.000 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.