Multiple sequence alignment - TraesCS3B01G486900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G486900 chr3B 100.000 2591 0 0 1 2591 733258664 733256074 0.000000e+00 4785.0
1 TraesCS3B01G486900 chr3B 95.803 1644 52 9 879 2509 733003358 733001719 0.000000e+00 2638.0
2 TraesCS3B01G486900 chr3B 89.128 883 71 10 969 1848 732998774 732997914 0.000000e+00 1075.0
3 TraesCS3B01G486900 chr3B 95.876 291 9 3 212 500 17350571 17350282 3.900000e-128 468.0
4 TraesCS3B01G486900 chr3B 84.064 251 28 9 527 773 733217940 733217698 5.580000e-57 231.0
5 TraesCS3B01G486900 chr3B 97.590 83 2 0 2509 2591 804201168 804201086 2.690000e-30 143.0
6 TraesCS3B01G486900 chr3B 93.617 47 3 0 2508 2554 42602669 42602623 1.290000e-08 71.3
7 TraesCS3B01G486900 chr3B 85.000 60 6 3 2489 2548 804806467 804806411 1.000000e-04 58.4
8 TraesCS3B01G486900 chr3D 89.128 1674 124 29 552 2189 552627871 552626220 0.000000e+00 2030.0
9 TraesCS3B01G486900 chr3D 89.160 1393 108 24 492 1851 552571648 552570266 0.000000e+00 1696.0
10 TraesCS3B01G486900 chr3D 89.847 1241 92 19 609 1830 552610232 552609007 0.000000e+00 1563.0
11 TraesCS3B01G486900 chr3D 87.745 1224 85 36 653 1838 552576631 552575435 0.000000e+00 1369.0
12 TraesCS3B01G486900 chr3D 91.234 308 22 4 1873 2177 552563657 552563352 5.160000e-112 414.0
13 TraesCS3B01G486900 chr3D 90.341 176 14 2 2179 2353 552625136 552624963 7.210000e-56 228.0
14 TraesCS3B01G486900 chr3A 90.867 1303 65 24 653 1924 688987384 688986105 0.000000e+00 1698.0
15 TraesCS3B01G486900 chr3A 91.162 1222 77 21 533 1742 688978496 688977294 0.000000e+00 1629.0
16 TraesCS3B01G486900 chr3A 91.011 623 42 11 994 1607 688965100 688964483 0.000000e+00 828.0
17 TraesCS3B01G486900 chr3A 86.352 381 24 5 1975 2353 688986102 688985748 8.690000e-105 390.0
18 TraesCS3B01G486900 chr3A 77.692 260 43 11 2097 2342 688974936 688974678 7.470000e-31 145.0
19 TraesCS3B01G486900 chr3A 95.181 83 4 0 2509 2591 627926552 627926470 5.820000e-27 132.0
20 TraesCS3B01G486900 chr3A 85.849 106 9 6 2408 2509 688990937 688990834 9.800000e-20 108.0
21 TraesCS3B01G486900 chr2A 96.503 286 8 2 212 495 753401648 753401363 3.020000e-129 472.0
22 TraesCS3B01G486900 chr2A 100.000 39 0 0 2507 2545 392729375 392729413 3.580000e-09 73.1
23 TraesCS3B01G486900 chr7B 95.533 291 11 2 210 498 31801367 31801077 5.050000e-127 464.0
24 TraesCS3B01G486900 chr5B 95.819 287 10 2 210 494 492534639 492534925 1.820000e-126 462.0
25 TraesCS3B01G486900 chr2B 95.833 288 9 3 208 492 583409710 583409997 1.820000e-126 462.0
26 TraesCS3B01G486900 chr2B 95.533 291 10 3 207 494 649447120 649446830 1.820000e-126 462.0
27 TraesCS3B01G486900 chr2B 98.795 83 1 0 2509 2591 779309027 779308945 5.780000e-32 148.0
28 TraesCS3B01G486900 chr2B 89.091 55 6 0 2499 2553 109330863 109330917 4.630000e-08 69.4
29 TraesCS3B01G486900 chr6B 95.502 289 11 2 208 494 149443085 149443373 6.530000e-126 460.0
30 TraesCS3B01G486900 chr5A 95.205 292 12 2 205 494 383894831 383894540 6.530000e-126 460.0
31 TraesCS3B01G486900 chr4A 94.000 300 16 2 205 502 721419434 721419135 1.090000e-123 453.0
32 TraesCS3B01G486900 chr1A 94.231 52 2 1 2507 2558 137874078 137874128 7.690000e-11 78.7
33 TraesCS3B01G486900 chr4D 90.741 54 5 0 2499 2552 51993122 51993175 3.580000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G486900 chr3B 733256074 733258664 2590 True 4785.0 4785 100.000000 1 2591 1 chr3B.!!$R4 2590
1 TraesCS3B01G486900 chr3B 732997914 733003358 5444 True 1856.5 2638 92.465500 879 2509 2 chr3B.!!$R7 1630
2 TraesCS3B01G486900 chr3D 552609007 552610232 1225 True 1563.0 1563 89.847000 609 1830 1 chr3D.!!$R2 1221
3 TraesCS3B01G486900 chr3D 552570266 552576631 6365 True 1532.5 1696 88.452500 492 1851 2 chr3D.!!$R3 1359
4 TraesCS3B01G486900 chr3D 552624963 552627871 2908 True 1129.0 2030 89.734500 552 2353 2 chr3D.!!$R4 1801
5 TraesCS3B01G486900 chr3A 688974678 688978496 3818 True 887.0 1629 84.427000 533 2342 2 chr3A.!!$R3 1809
6 TraesCS3B01G486900 chr3A 688964483 688965100 617 True 828.0 828 91.011000 994 1607 1 chr3A.!!$R2 613
7 TraesCS3B01G486900 chr3A 688985748 688990937 5189 True 732.0 1698 87.689333 653 2509 3 chr3A.!!$R4 1856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.028433 CCCCTTCCCCACCCCTATAA 60.028 60.0 0.0 0.0 0.00 0.98 F
561 5054 0.603569 GTTCTTCTCCAGCGAGGTCA 59.396 55.0 0.0 0.0 39.02 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1047 5573 0.462581 GCTGGCTCCGTTGATCATCA 60.463 55.0 0.00 0.0 0.0 3.07 R
2505 14818 0.249573 GCGCGGGTATGGCTAGTTAA 60.250 55.0 8.83 0.0 0.0 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.125552 TTCCTCATGCAGTCGCCG 60.126 61.111 0.00 0.00 37.32 6.46
18 19 3.664025 TTCCTCATGCAGTCGCCGG 62.664 63.158 0.00 0.00 37.32 6.13
36 37 3.176297 CCAACCCAGGCCTAACCA 58.824 61.111 3.98 0.00 43.14 3.67
38 39 1.304134 CAACCCAGGCCTAACCACC 60.304 63.158 3.98 0.00 43.14 4.61
40 41 0.178855 AACCCAGGCCTAACCACCTA 60.179 55.000 3.98 0.00 43.14 3.08
41 42 0.912968 ACCCAGGCCTAACCACCTAC 60.913 60.000 3.98 0.00 43.14 3.18
42 43 1.632965 CCCAGGCCTAACCACCTACC 61.633 65.000 3.98 0.00 43.14 3.18
46 47 1.683418 GGCCTAACCACCTACCTCCG 61.683 65.000 0.00 0.00 38.86 4.63
48 49 1.683418 CCTAACCACCTACCTCCGCC 61.683 65.000 0.00 0.00 0.00 6.13
49 50 1.683418 CTAACCACCTACCTCCGCCC 61.683 65.000 0.00 0.00 0.00 6.13
74 75 4.021925 GACCTTGCACCTCGCCCT 62.022 66.667 0.00 0.00 41.33 5.19
75 76 3.959991 GACCTTGCACCTCGCCCTC 62.960 68.421 0.00 0.00 41.33 4.30
76 77 4.785453 CCTTGCACCTCGCCCTCC 62.785 72.222 0.00 0.00 41.33 4.30
88 89 4.838152 CCCTCCGCCATCACCGTG 62.838 72.222 0.00 0.00 0.00 4.94
89 90 4.082523 CCTCCGCCATCACCGTGT 62.083 66.667 0.00 0.00 0.00 4.49
90 91 2.047274 CTCCGCCATCACCGTGTT 60.047 61.111 0.00 0.00 0.00 3.32
91 92 1.671054 CTCCGCCATCACCGTGTTT 60.671 57.895 0.00 0.00 0.00 2.83
92 93 1.911293 CTCCGCCATCACCGTGTTTG 61.911 60.000 0.00 0.00 0.00 2.93
93 94 2.126888 CGCCATCACCGTGTTTGC 60.127 61.111 0.00 0.00 0.00 3.68
94 95 2.258286 GCCATCACCGTGTTTGCC 59.742 61.111 0.00 0.00 0.00 4.52
97 98 3.361977 ATCACCGTGTTTGCCGCC 61.362 61.111 0.00 0.00 0.00 6.13
113 114 3.917760 CCGCCCCGACCATCTCTC 61.918 72.222 0.00 0.00 0.00 3.20
114 115 2.835431 CGCCCCGACCATCTCTCT 60.835 66.667 0.00 0.00 0.00 3.10
115 116 1.528542 CGCCCCGACCATCTCTCTA 60.529 63.158 0.00 0.00 0.00 2.43
116 117 0.896019 CGCCCCGACCATCTCTCTAT 60.896 60.000 0.00 0.00 0.00 1.98
122 123 1.198867 CGACCATCTCTCTATGCCTCG 59.801 57.143 0.00 0.00 0.00 4.63
125 126 2.234143 CCATCTCTCTATGCCTCGTGA 58.766 52.381 0.00 0.00 0.00 4.35
126 127 2.030363 CCATCTCTCTATGCCTCGTGAC 60.030 54.545 0.00 0.00 0.00 3.67
128 129 3.006112 TCTCTCTATGCCTCGTGACTT 57.994 47.619 0.00 0.00 0.00 3.01
129 130 3.357203 TCTCTCTATGCCTCGTGACTTT 58.643 45.455 0.00 0.00 0.00 2.66
130 131 4.524053 TCTCTCTATGCCTCGTGACTTTA 58.476 43.478 0.00 0.00 0.00 1.85
131 132 5.133941 TCTCTCTATGCCTCGTGACTTTAT 58.866 41.667 0.00 0.00 0.00 1.40
133 134 5.592054 TCTCTATGCCTCGTGACTTTATTG 58.408 41.667 0.00 0.00 0.00 1.90
134 135 5.359860 TCTCTATGCCTCGTGACTTTATTGA 59.640 40.000 0.00 0.00 0.00 2.57
136 137 4.946784 ATGCCTCGTGACTTTATTGAAC 57.053 40.909 0.00 0.00 0.00 3.18
137 138 3.734463 TGCCTCGTGACTTTATTGAACA 58.266 40.909 0.00 0.00 0.00 3.18
138 139 4.130857 TGCCTCGTGACTTTATTGAACAA 58.869 39.130 0.00 0.00 0.00 2.83
140 141 4.213482 GCCTCGTGACTTTATTGAACAACT 59.787 41.667 0.00 0.00 0.00 3.16
144 145 6.491394 TCGTGACTTTATTGAACAACTTTGG 58.509 36.000 0.00 0.00 0.00 3.28
146 147 6.196353 CGTGACTTTATTGAACAACTTTGGTG 59.804 38.462 0.00 0.00 0.00 4.17
148 149 7.920682 GTGACTTTATTGAACAACTTTGGTGAT 59.079 33.333 0.00 0.00 0.00 3.06
152 153 1.606668 TGAACAACTTTGGTGATCCGC 59.393 47.619 0.00 0.00 36.30 5.54
153 154 1.880027 GAACAACTTTGGTGATCCGCT 59.120 47.619 0.00 0.00 36.30 5.52
154 155 1.238439 ACAACTTTGGTGATCCGCTG 58.762 50.000 0.00 0.00 36.30 5.18
155 156 0.109597 CAACTTTGGTGATCCGCTGC 60.110 55.000 0.00 0.00 36.30 5.25
177 178 4.047196 CCCCCTTCCCCACCCCTA 62.047 72.222 0.00 0.00 0.00 3.53
180 181 0.028433 CCCCTTCCCCACCCCTATAA 60.028 60.000 0.00 0.00 0.00 0.98
181 182 1.446016 CCCTTCCCCACCCCTATAAG 58.554 60.000 0.00 0.00 0.00 1.73
182 183 1.060876 CCCTTCCCCACCCCTATAAGA 60.061 57.143 0.00 0.00 0.00 2.10
184 185 2.644798 CCTTCCCCACCCCTATAAGATG 59.355 54.545 0.00 0.00 0.00 2.90
185 186 3.598264 CTTCCCCACCCCTATAAGATGA 58.402 50.000 0.00 0.00 0.00 2.92
187 188 3.531059 TCCCCACCCCTATAAGATGATG 58.469 50.000 0.00 0.00 0.00 3.07
189 190 2.578021 CCCACCCCTATAAGATGATGGG 59.422 54.545 0.00 0.00 39.68 4.00
198 199 6.966751 CCTATAAGATGATGGGGATGTTGAT 58.033 40.000 0.00 0.00 0.00 2.57
199 200 7.408543 CCTATAAGATGATGGGGATGTTGATT 58.591 38.462 0.00 0.00 0.00 2.57
200 201 7.555554 CCTATAAGATGATGGGGATGTTGATTC 59.444 40.741 0.00 0.00 0.00 2.52
201 202 4.109877 AGATGATGGGGATGTTGATTCC 57.890 45.455 0.00 0.00 0.00 3.01
208 209 3.903530 GGGATGTTGATTCCCCCTAAT 57.096 47.619 0.00 0.00 46.20 1.73
211 212 5.711698 GGGATGTTGATTCCCCCTAATTAA 58.288 41.667 0.00 0.00 46.20 1.40
212 213 5.775195 GGGATGTTGATTCCCCCTAATTAAG 59.225 44.000 0.00 0.00 46.20 1.85
213 214 5.775195 GGATGTTGATTCCCCCTAATTAAGG 59.225 44.000 0.00 0.00 46.09 2.69
214 215 4.542697 TGTTGATTCCCCCTAATTAAGGC 58.457 43.478 0.00 0.00 45.03 4.35
216 217 2.449345 TGATTCCCCCTAATTAAGGCCC 59.551 50.000 0.00 0.00 45.03 5.80
217 218 2.313804 TTCCCCCTAATTAAGGCCCT 57.686 50.000 0.00 0.00 45.03 5.19
218 219 1.529744 TCCCCCTAATTAAGGCCCTG 58.470 55.000 0.00 0.00 45.03 4.45
221 222 2.023404 CCCCCTAATTAAGGCCCTGTTT 60.023 50.000 0.00 0.00 45.03 2.83
222 223 3.031013 CCCCTAATTAAGGCCCTGTTTG 58.969 50.000 0.00 0.00 45.03 2.93
224 225 3.565670 CCCTAATTAAGGCCCTGTTTGGT 60.566 47.826 0.00 0.00 45.03 3.67
226 227 4.159693 CCTAATTAAGGCCCTGTTTGGTTC 59.840 45.833 0.00 0.00 38.97 3.62
227 228 2.757894 TTAAGGCCCTGTTTGGTTCA 57.242 45.000 0.00 0.00 0.00 3.18
230 231 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
231 232 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
234 235 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
235 236 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
237 238 5.755849 CCCTGTTTGGTTCATAAGTCCTAT 58.244 41.667 0.00 0.00 0.00 2.57
238 239 5.590259 CCCTGTTTGGTTCATAAGTCCTATG 59.410 44.000 0.00 0.00 39.11 2.23
242 243 8.877864 TGTTTGGTTCATAAGTCCTATGATTT 57.122 30.769 0.00 0.00 44.72 2.17
271 272 6.937392 AGTCCCAACTTATAAGTCTCAAGTC 58.063 40.000 18.28 6.78 38.57 3.01
272 273 6.070710 AGTCCCAACTTATAAGTCTCAAGTCC 60.071 42.308 18.28 3.21 38.57 3.85
273 274 5.189145 TCCCAACTTATAAGTCTCAAGTCCC 59.811 44.000 18.28 0.00 38.57 4.46
275 276 6.383147 CCCAACTTATAAGTCTCAAGTCCCTA 59.617 42.308 18.28 0.00 38.57 3.53
278 279 8.750298 CAACTTATAAGTCTCAAGTCCCTAAGA 58.250 37.037 18.28 0.00 38.57 2.10
279 280 8.896722 ACTTATAAGTCTCAAGTCCCTAAGAA 57.103 34.615 12.50 0.00 32.86 2.52
281 282 8.896722 TTATAAGTCTCAAGTCCCTAAGAAGT 57.103 34.615 0.00 0.00 0.00 3.01
283 284 4.090819 AGTCTCAAGTCCCTAAGAAGTCC 58.909 47.826 0.00 0.00 0.00 3.85
284 285 3.196039 GTCTCAAGTCCCTAAGAAGTCCC 59.804 52.174 0.00 0.00 0.00 4.46
287 288 4.351127 TCAAGTCCCTAAGAAGTCCCTAC 58.649 47.826 0.00 0.00 0.00 3.18
289 290 2.934511 AGTCCCTAAGAAGTCCCTACCT 59.065 50.000 0.00 0.00 0.00 3.08
290 291 3.032459 GTCCCTAAGAAGTCCCTACCTG 58.968 54.545 0.00 0.00 0.00 4.00
291 292 2.658489 TCCCTAAGAAGTCCCTACCTGT 59.342 50.000 0.00 0.00 0.00 4.00
293 294 3.844804 CCCTAAGAAGTCCCTACCTGTTT 59.155 47.826 0.00 0.00 0.00 2.83
295 296 3.790089 AAGAAGTCCCTACCTGTTTGG 57.210 47.619 0.00 0.00 42.93 3.28
306 307 2.938956 CCTGTTTGGTTCCTGAGACT 57.061 50.000 0.00 0.00 0.00 3.24
307 308 3.214696 CCTGTTTGGTTCCTGAGACTT 57.785 47.619 0.00 0.00 0.00 3.01
309 310 4.911390 CCTGTTTGGTTCCTGAGACTTAT 58.089 43.478 0.00 0.00 0.00 1.73
310 311 6.049955 CCTGTTTGGTTCCTGAGACTTATA 57.950 41.667 0.00 0.00 0.00 0.98
312 313 6.595716 CCTGTTTGGTTCCTGAGACTTATAAG 59.404 42.308 11.05 11.05 0.00 1.73
336 337 9.448587 AAGTCCCTATAAGACCATATTACAACT 57.551 33.333 0.09 0.00 34.67 3.16
355 356 7.852550 ACAACTATAAGTCCCTATAAGTCCC 57.147 40.000 0.00 0.00 0.00 4.46
356 357 7.602868 ACAACTATAAGTCCCTATAAGTCCCT 58.397 38.462 0.00 0.00 0.00 4.20
358 359 6.803017 ACTATAAGTCCCTATAAGTCCCTCC 58.197 44.000 0.00 0.00 0.00 4.30
360 361 4.645968 AAGTCCCTATAAGTCCCTCCTT 57.354 45.455 0.00 0.00 0.00 3.36
361 362 3.930035 AGTCCCTATAAGTCCCTCCTTG 58.070 50.000 0.00 0.00 0.00 3.61
362 363 3.536434 AGTCCCTATAAGTCCCTCCTTGA 59.464 47.826 0.00 0.00 0.00 3.02
364 365 3.797845 TCCCTATAAGTCCCTCCTTGAGA 59.202 47.826 0.00 0.00 0.00 3.27
368 369 4.618378 ATAAGTCCCTCCTTGAGAGTCT 57.382 45.455 0.00 0.00 41.47 3.24
370 371 4.405756 AAGTCCCTCCTTGAGAGTCTTA 57.594 45.455 0.00 0.00 41.47 2.10
372 373 4.954089 AGTCCCTCCTTGAGAGTCTTATT 58.046 43.478 0.00 0.00 41.47 1.40
373 374 5.346270 AGTCCCTCCTTGAGAGTCTTATTT 58.654 41.667 0.00 0.00 41.47 1.40
375 376 5.187967 GTCCCTCCTTGAGAGTCTTATTTCA 59.812 44.000 0.00 0.00 41.47 2.69
376 377 5.966935 TCCCTCCTTGAGAGTCTTATTTCAT 59.033 40.000 0.00 0.00 41.47 2.57
377 378 7.070074 GTCCCTCCTTGAGAGTCTTATTTCATA 59.930 40.741 0.00 0.00 41.47 2.15
380 381 8.482128 CCTCCTTGAGAGTCTTATTTCATAAGT 58.518 37.037 0.00 0.00 41.47 2.24
390 391 8.897752 AGTCTTATTTCATAAGTCTCAAATGCC 58.102 33.333 3.93 0.00 42.21 4.40
391 392 8.131731 GTCTTATTTCATAAGTCTCAAATGCCC 58.868 37.037 3.93 0.00 42.21 5.36
393 394 5.643379 TTTCATAAGTCTCAAATGCCCAC 57.357 39.130 0.00 0.00 0.00 4.61
396 397 5.324409 TCATAAGTCTCAAATGCCCACTTT 58.676 37.500 0.00 0.00 0.00 2.66
397 398 6.480763 TCATAAGTCTCAAATGCCCACTTTA 58.519 36.000 0.00 0.00 0.00 1.85
398 399 6.945435 TCATAAGTCTCAAATGCCCACTTTAA 59.055 34.615 0.00 0.00 0.00 1.52
401 402 4.762251 AGTCTCAAATGCCCACTTTAAGTC 59.238 41.667 0.00 0.00 0.00 3.01
402 403 4.079253 TCTCAAATGCCCACTTTAAGTCC 58.921 43.478 0.00 0.00 0.00 3.85
403 404 3.161866 TCAAATGCCCACTTTAAGTCCC 58.838 45.455 0.00 0.00 0.00 4.46
405 406 4.043561 TCAAATGCCCACTTTAAGTCCCTA 59.956 41.667 0.00 0.00 0.00 3.53
408 409 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
409 410 5.367945 TGCCCACTTTAAGTCCCTATAAG 57.632 43.478 0.00 0.00 0.00 1.73
410 411 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
411 412 5.252164 TGCCCACTTTAAGTCCCTATAAGTT 59.748 40.000 0.00 0.00 0.00 2.66
413 414 6.354938 CCCACTTTAAGTCCCTATAAGTTCC 58.645 44.000 0.00 0.00 0.00 3.62
414 415 6.158169 CCCACTTTAAGTCCCTATAAGTTCCT 59.842 42.308 0.00 0.00 0.00 3.36
416 417 7.273712 CACTTTAAGTCCCTATAAGTTCCTCC 58.726 42.308 0.00 0.00 0.00 4.30
417 418 7.125963 CACTTTAAGTCCCTATAAGTTCCTCCT 59.874 40.741 0.00 0.00 0.00 3.69
418 419 7.125963 ACTTTAAGTCCCTATAAGTTCCTCCTG 59.874 40.741 0.00 0.00 0.00 3.86
420 421 4.961585 AGTCCCTATAAGTTCCTCCTGTT 58.038 43.478 0.00 0.00 0.00 3.16
421 422 5.351405 AGTCCCTATAAGTTCCTCCTGTTT 58.649 41.667 0.00 0.00 0.00 2.83
423 424 4.473559 TCCCTATAAGTTCCTCCTGTTTGG 59.526 45.833 0.00 0.00 37.10 3.28
424 425 4.227527 CCCTATAAGTTCCTCCTGTTTGGT 59.772 45.833 0.00 0.00 37.07 3.67
425 426 5.281037 CCCTATAAGTTCCTCCTGTTTGGTT 60.281 44.000 0.00 0.00 37.07 3.67
426 427 6.246163 CCTATAAGTTCCTCCTGTTTGGTTT 58.754 40.000 0.00 0.00 37.07 3.27
427 428 7.399634 CCTATAAGTTCCTCCTGTTTGGTTTA 58.600 38.462 0.00 0.00 37.07 2.01
428 429 7.553044 CCTATAAGTTCCTCCTGTTTGGTTTAG 59.447 40.741 0.00 0.00 37.07 1.85
430 431 5.584551 AGTTCCTCCTGTTTGGTTTAGAT 57.415 39.130 0.00 0.00 37.07 1.98
435 436 4.010349 CTCCTGTTTGGTTTAGATGGGAC 58.990 47.826 0.00 0.00 37.07 4.46
439 440 6.011981 TCCTGTTTGGTTTAGATGGGACTTAT 60.012 38.462 0.00 0.00 37.07 1.73
443 444 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
444 445 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
445 446 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
446 447 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
447 448 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
448 449 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
450 451 6.910259 AGATGGGACTTATAGGGACTTTTT 57.090 37.500 0.00 0.00 41.75 1.94
472 473 8.715190 TTTTTAAGTCCCTAAGCCAATAAGTT 57.285 30.769 0.00 0.00 0.00 2.66
473 474 7.933215 TTTAAGTCCCTAAGCCAATAAGTTC 57.067 36.000 0.00 0.00 0.00 3.01
475 476 4.112331 AGTCCCTAAGCCAATAAGTTCCT 58.888 43.478 0.00 0.00 0.00 3.36
478 479 4.538490 TCCCTAAGCCAATAAGTTCCTGAA 59.462 41.667 0.00 0.00 0.00 3.02
479 480 5.014755 TCCCTAAGCCAATAAGTTCCTGAAA 59.985 40.000 0.00 0.00 0.00 2.69
482 483 6.208599 CCTAAGCCAATAAGTTCCTGAAACAA 59.791 38.462 0.00 0.00 40.56 2.83
484 485 5.842907 AGCCAATAAGTTCCTGAAACAAAC 58.157 37.500 0.00 0.00 40.56 2.93
485 486 5.362430 AGCCAATAAGTTCCTGAAACAAACA 59.638 36.000 0.00 0.00 40.56 2.83
486 487 5.462068 GCCAATAAGTTCCTGAAACAAACAC 59.538 40.000 0.00 0.00 40.56 3.32
487 488 5.983118 CCAATAAGTTCCTGAAACAAACACC 59.017 40.000 0.00 0.00 40.56 4.16
488 489 5.784578 ATAAGTTCCTGAAACAAACACCC 57.215 39.130 0.00 0.00 40.56 4.61
489 490 3.382083 AGTTCCTGAAACAAACACCCT 57.618 42.857 0.00 0.00 40.56 4.34
490 491 3.288092 AGTTCCTGAAACAAACACCCTC 58.712 45.455 0.00 0.00 40.56 4.30
492 493 4.165372 AGTTCCTGAAACAAACACCCTCTA 59.835 41.667 0.00 0.00 40.56 2.43
494 495 4.714632 TCCTGAAACAAACACCCTCTAAG 58.285 43.478 0.00 0.00 0.00 2.18
495 496 4.410883 TCCTGAAACAAACACCCTCTAAGA 59.589 41.667 0.00 0.00 0.00 2.10
518 5011 9.941325 AAGATAGATAATGAGGCTATGACTTTG 57.059 33.333 0.00 0.00 0.00 2.77
521 5014 7.372260 AGATAATGAGGCTATGACTTTGTCT 57.628 36.000 0.00 0.00 33.15 3.41
524 5017 9.717942 GATAATGAGGCTATGACTTTGTCTTAT 57.282 33.333 0.00 0.00 33.15 1.73
561 5054 0.603569 GTTCTTCTCCAGCGAGGTCA 59.396 55.000 0.00 0.00 39.02 4.02
562 5055 1.000955 GTTCTTCTCCAGCGAGGTCAA 59.999 52.381 0.00 0.00 39.02 3.18
565 5058 0.756294 TTCTCCAGCGAGGTCAAACA 59.244 50.000 0.00 0.00 39.02 2.83
567 5060 1.347707 TCTCCAGCGAGGTCAAACATT 59.652 47.619 0.00 0.00 39.02 2.71
579 5072 3.498397 GGTCAAACATTCACATCTCGTGT 59.502 43.478 0.00 0.00 46.44 4.49
589 5082 0.798776 CATCTCGTGTGCTTGGGAAC 59.201 55.000 0.00 0.00 0.00 3.62
723 5222 3.503363 CCGTATTGCCATGTCATGCTAAT 59.497 43.478 7.35 11.40 0.00 1.73
724 5223 4.022935 CCGTATTGCCATGTCATGCTAATT 60.023 41.667 7.35 0.00 0.00 1.40
726 5225 6.293900 CCGTATTGCCATGTCATGCTAATTAA 60.294 38.462 7.35 0.00 0.00 1.40
727 5226 6.798476 CGTATTGCCATGTCATGCTAATTAAG 59.202 38.462 7.35 2.60 0.00 1.85
728 5227 6.964807 ATTGCCATGTCATGCTAATTAAGA 57.035 33.333 7.35 0.00 0.00 2.10
729 5228 6.772360 TTGCCATGTCATGCTAATTAAGAA 57.228 33.333 7.35 0.00 0.00 2.52
730 5229 6.772360 TGCCATGTCATGCTAATTAAGAAA 57.228 33.333 7.35 0.00 0.00 2.52
817 5325 4.397417 GCAGATGGAGCATAAACAACTTCT 59.603 41.667 0.00 0.00 0.00 2.85
867 5382 3.889780 CGTACAGCGCCATTAAACC 57.110 52.632 2.29 0.00 0.00 3.27
875 5390 4.183101 CAGCGCCATTAAACCAATGATTT 58.817 39.130 2.29 0.00 45.99 2.17
990 5511 1.721804 GCGACGTTAAAGCAGAGCAAC 60.722 52.381 0.00 0.00 0.00 4.17
1047 5573 3.063084 GCCTCACCGTCGTCCTCT 61.063 66.667 0.00 0.00 0.00 3.69
1110 10127 1.577328 CGCTGGTCTTCAACGGCAAT 61.577 55.000 0.00 0.00 31.90 3.56
1126 10143 1.072332 AATGGCTGCACGGTGTACA 59.928 52.632 10.24 0.97 0.00 2.90
1257 10274 1.092345 GCTTCGGGATGTTCAGGAGC 61.092 60.000 0.00 0.00 0.00 4.70
1422 10442 3.768632 CGCAAGTCGGAGTACAGC 58.231 61.111 0.00 0.00 33.78 4.40
1606 10638 1.752498 TGTGATGGATGCCTGAAATGC 59.248 47.619 0.00 0.00 0.00 3.56
1633 10665 3.772025 CCTCTTCTTCTCTAGCCAGGAAA 59.228 47.826 0.00 0.00 0.00 3.13
1650 10716 6.276847 CCAGGAAAGTAGTACATGATGAGAC 58.723 44.000 0.00 0.00 0.00 3.36
1651 10717 6.097554 CCAGGAAAGTAGTACATGATGAGACT 59.902 42.308 0.00 4.76 0.00 3.24
1652 10718 6.977502 CAGGAAAGTAGTACATGATGAGACTG 59.022 42.308 0.00 0.00 0.00 3.51
1653 10719 6.892456 AGGAAAGTAGTACATGATGAGACTGA 59.108 38.462 0.00 0.00 0.00 3.41
1654 10720 7.563188 AGGAAAGTAGTACATGATGAGACTGAT 59.437 37.037 0.00 1.97 0.00 2.90
1655 10721 8.851145 GGAAAGTAGTACATGATGAGACTGATA 58.149 37.037 0.00 0.00 0.00 2.15
1681 10747 1.076332 GTAGGCGGTTCATGTGACAC 58.924 55.000 0.00 0.00 0.00 3.67
1770 11113 6.536941 GTGCATGTTTTTACCCTTTCTCAAAA 59.463 34.615 0.00 0.00 0.00 2.44
1854 11197 3.788434 TCTTTCGATGTGTTTCTTCGC 57.212 42.857 0.00 0.00 41.44 4.70
1967 11325 8.924511 TTATGTCAGAAAGAGATCCAAAAAGT 57.075 30.769 0.00 0.00 31.78 2.66
1971 11329 9.184523 TGTCAGAAAGAGATCCAAAAAGTTTTA 57.815 29.630 0.24 0.00 0.00 1.52
1999 11357 1.615392 AGGGTCAACAATTCAAGCAGC 59.385 47.619 0.00 0.00 0.00 5.25
2039 11664 5.359576 ACTGACAAAATTAGACAAAGTGGCA 59.640 36.000 0.00 0.00 0.00 4.92
2249 14556 2.885135 AAGTCCAATGCTCCATGTGA 57.115 45.000 0.00 0.00 0.00 3.58
2342 14655 3.050339 CCAACCTTTGGCGCACAT 58.950 55.556 10.83 0.00 45.17 3.21
2343 14656 1.373246 CCAACCTTTGGCGCACATG 60.373 57.895 10.83 0.00 45.17 3.21
2353 14666 1.503091 GCGCACATGCAGTCATTGA 59.497 52.632 0.30 0.00 42.21 2.57
2354 14667 0.099968 GCGCACATGCAGTCATTGAT 59.900 50.000 0.30 0.00 42.21 2.57
2355 14668 1.468565 GCGCACATGCAGTCATTGATT 60.469 47.619 0.30 0.00 42.21 2.57
2356 14669 2.871133 CGCACATGCAGTCATTGATTT 58.129 42.857 4.49 0.00 42.21 2.17
2357 14670 3.247442 CGCACATGCAGTCATTGATTTT 58.753 40.909 4.49 0.00 42.21 1.82
2358 14671 3.676172 CGCACATGCAGTCATTGATTTTT 59.324 39.130 4.49 0.00 42.21 1.94
2382 14695 5.346181 TTTTTCCGACAAAGGGTGATTTT 57.654 34.783 0.00 0.00 0.00 1.82
2383 14696 5.346181 TTTTCCGACAAAGGGTGATTTTT 57.654 34.783 0.00 0.00 0.00 1.94
2384 14697 6.466885 TTTTCCGACAAAGGGTGATTTTTA 57.533 33.333 0.00 0.00 0.00 1.52
2385 14698 6.658188 TTTCCGACAAAGGGTGATTTTTAT 57.342 33.333 0.00 0.00 0.00 1.40
2386 14699 6.658188 TTCCGACAAAGGGTGATTTTTATT 57.342 33.333 0.00 0.00 0.00 1.40
2387 14700 6.019779 TCCGACAAAGGGTGATTTTTATTG 57.980 37.500 0.00 0.00 0.00 1.90
2388 14701 5.770663 TCCGACAAAGGGTGATTTTTATTGA 59.229 36.000 0.00 0.00 0.00 2.57
2389 14702 5.861787 CCGACAAAGGGTGATTTTTATTGAC 59.138 40.000 0.00 0.00 0.00 3.18
2390 14703 6.294508 CCGACAAAGGGTGATTTTTATTGACT 60.295 38.462 0.00 0.00 0.00 3.41
2391 14704 7.094549 CCGACAAAGGGTGATTTTTATTGACTA 60.095 37.037 0.00 0.00 0.00 2.59
2392 14705 8.293867 CGACAAAGGGTGATTTTTATTGACTAA 58.706 33.333 0.00 0.00 0.00 2.24
2393 14706 9.974980 GACAAAGGGTGATTTTTATTGACTAAA 57.025 29.630 0.00 0.00 0.00 1.85
2397 14710 9.942850 AAGGGTGATTTTTATTGACTAAAATGG 57.057 29.630 0.00 0.00 38.70 3.16
2398 14711 9.320295 AGGGTGATTTTTATTGACTAAAATGGA 57.680 29.630 0.00 0.00 38.70 3.41
2399 14712 9.586435 GGGTGATTTTTATTGACTAAAATGGAG 57.414 33.333 0.00 0.00 38.70 3.86
2400 14713 9.087424 GGTGATTTTTATTGACTAAAATGGAGC 57.913 33.333 0.00 0.00 38.70 4.70
2401 14714 9.638239 GTGATTTTTATTGACTAAAATGGAGCA 57.362 29.630 0.00 0.00 38.70 4.26
2408 14721 9.851686 TTATTGACTAAAATGGAGCATATGTCT 57.148 29.630 4.29 1.93 0.00 3.41
2411 14724 8.837788 TGACTAAAATGGAGCATATGTCTATG 57.162 34.615 4.29 0.00 38.22 2.23
2412 14725 7.879677 TGACTAAAATGGAGCATATGTCTATGG 59.120 37.037 4.29 0.85 36.11 2.74
2413 14726 7.170965 ACTAAAATGGAGCATATGTCTATGGG 58.829 38.462 4.29 0.58 36.11 4.00
2414 14727 5.589367 AAATGGAGCATATGTCTATGGGT 57.411 39.130 4.29 0.00 36.11 4.51
2415 14728 6.702449 AAATGGAGCATATGTCTATGGGTA 57.298 37.500 4.29 0.00 36.11 3.69
2416 14729 6.898171 AATGGAGCATATGTCTATGGGTAT 57.102 37.500 4.29 0.00 36.11 2.73
2417 14730 5.682234 TGGAGCATATGTCTATGGGTATG 57.318 43.478 4.29 0.00 36.11 2.39
2418 14731 5.093677 TGGAGCATATGTCTATGGGTATGT 58.906 41.667 4.29 0.00 36.11 2.29
2419 14732 6.260663 TGGAGCATATGTCTATGGGTATGTA 58.739 40.000 4.29 0.00 36.11 2.29
2420 14733 6.902974 TGGAGCATATGTCTATGGGTATGTAT 59.097 38.462 4.29 0.00 36.11 2.29
2421 14734 7.147672 TGGAGCATATGTCTATGGGTATGTATG 60.148 40.741 4.29 0.00 36.11 2.39
2422 14735 7.129457 AGCATATGTCTATGGGTATGTATGG 57.871 40.000 4.29 0.00 36.11 2.74
2423 14736 6.673978 AGCATATGTCTATGGGTATGTATGGT 59.326 38.462 4.29 0.00 36.11 3.55
2424 14737 7.182749 AGCATATGTCTATGGGTATGTATGGTT 59.817 37.037 4.29 0.00 36.11 3.67
2425 14738 7.829211 GCATATGTCTATGGGTATGTATGGTTT 59.171 37.037 4.29 0.00 36.11 3.27
2426 14739 9.383519 CATATGTCTATGGGTATGTATGGTTTC 57.616 37.037 0.00 0.00 32.60 2.78
2427 14740 6.816616 TGTCTATGGGTATGTATGGTTTCA 57.183 37.500 0.00 0.00 0.00 2.69
2428 14741 6.826668 TGTCTATGGGTATGTATGGTTTCAG 58.173 40.000 0.00 0.00 0.00 3.02
2429 14742 6.385759 TGTCTATGGGTATGTATGGTTTCAGT 59.614 38.462 0.00 0.00 0.00 3.41
2430 14743 6.929606 GTCTATGGGTATGTATGGTTTCAGTC 59.070 42.308 0.00 0.00 0.00 3.51
2431 14744 5.975988 ATGGGTATGTATGGTTTCAGTCT 57.024 39.130 0.00 0.00 0.00 3.24
2432 14745 5.097742 TGGGTATGTATGGTTTCAGTCTG 57.902 43.478 0.00 0.00 0.00 3.51
2433 14746 3.877508 GGGTATGTATGGTTTCAGTCTGC 59.122 47.826 0.00 0.00 0.00 4.26
2434 14747 4.384208 GGGTATGTATGGTTTCAGTCTGCT 60.384 45.833 0.00 0.00 0.00 4.24
2435 14748 4.811557 GGTATGTATGGTTTCAGTCTGCTC 59.188 45.833 0.00 0.00 0.00 4.26
2436 14749 4.558226 ATGTATGGTTTCAGTCTGCTCA 57.442 40.909 0.00 0.00 0.00 4.26
2437 14750 4.350368 TGTATGGTTTCAGTCTGCTCAA 57.650 40.909 0.00 0.00 0.00 3.02
2438 14751 4.713553 TGTATGGTTTCAGTCTGCTCAAA 58.286 39.130 0.00 0.00 0.00 2.69
2439 14752 5.316167 TGTATGGTTTCAGTCTGCTCAAAT 58.684 37.500 0.00 0.00 0.00 2.32
2440 14753 6.472016 TGTATGGTTTCAGTCTGCTCAAATA 58.528 36.000 0.00 0.00 0.00 1.40
2441 14754 5.886960 ATGGTTTCAGTCTGCTCAAATAC 57.113 39.130 0.00 0.00 0.00 1.89
2442 14755 4.713553 TGGTTTCAGTCTGCTCAAATACA 58.286 39.130 0.00 0.00 0.00 2.29
2443 14756 5.129634 TGGTTTCAGTCTGCTCAAATACAA 58.870 37.500 0.00 0.00 0.00 2.41
2444 14757 5.769662 TGGTTTCAGTCTGCTCAAATACAAT 59.230 36.000 0.00 0.00 0.00 2.71
2445 14758 6.265196 TGGTTTCAGTCTGCTCAAATACAATT 59.735 34.615 0.00 0.00 0.00 2.32
2446 14759 6.803807 GGTTTCAGTCTGCTCAAATACAATTC 59.196 38.462 0.00 0.00 0.00 2.17
2447 14760 7.308830 GGTTTCAGTCTGCTCAAATACAATTCT 60.309 37.037 0.00 0.00 0.00 2.40
2448 14761 7.750229 TTCAGTCTGCTCAAATACAATTCTT 57.250 32.000 0.00 0.00 0.00 2.52
2449 14762 7.750229 TCAGTCTGCTCAAATACAATTCTTT 57.250 32.000 0.00 0.00 0.00 2.52
2450 14763 8.169977 TCAGTCTGCTCAAATACAATTCTTTT 57.830 30.769 0.00 0.00 0.00 2.27
2451 14764 8.077991 TCAGTCTGCTCAAATACAATTCTTTTG 58.922 33.333 0.00 0.00 0.00 2.44
2452 14765 7.327761 CAGTCTGCTCAAATACAATTCTTTTGG 59.672 37.037 0.00 0.00 32.52 3.28
2453 14766 7.231317 AGTCTGCTCAAATACAATTCTTTTGGA 59.769 33.333 0.00 0.00 32.52 3.53
2454 14767 7.867403 GTCTGCTCAAATACAATTCTTTTGGAA 59.133 33.333 0.00 0.00 38.41 3.53
2455 14768 8.420222 TCTGCTCAAATACAATTCTTTTGGAAA 58.580 29.630 0.00 0.00 37.49 3.13
2456 14769 8.592105 TGCTCAAATACAATTCTTTTGGAAAG 57.408 30.769 0.00 0.00 37.49 2.62
2457 14770 8.420222 TGCTCAAATACAATTCTTTTGGAAAGA 58.580 29.630 0.00 0.00 37.49 2.52
2458 14771 9.260002 GCTCAAATACAATTCTTTTGGAAAGAA 57.740 29.630 15.70 15.70 40.17 2.52
2460 14773 9.541143 TCAAATACAATTCTTTTGGAAAGAACC 57.459 29.630 15.68 0.00 38.88 3.62
2461 14774 9.546428 CAAATACAATTCTTTTGGAAAGAACCT 57.454 29.630 15.68 6.06 38.88 3.50
2464 14777 9.764363 ATACAATTCTTTTGGAAAGAACCTTTC 57.236 29.630 15.68 10.14 38.88 2.62
2465 14778 6.756542 ACAATTCTTTTGGAAAGAACCTTTCG 59.243 34.615 15.68 6.11 38.88 3.46
2466 14779 4.911514 TCTTTTGGAAAGAACCTTTCGG 57.088 40.909 11.79 0.00 34.02 4.30
2467 14780 5.362717 ATTCTTTTGGAAAGAACCTTTCGGT 59.637 36.000 15.68 0.00 40.57 4.69
2468 14781 5.438833 TCTTTTGGAAAGAACCTTTCGGTA 58.561 37.500 11.79 1.23 44.73 4.02
2469 14782 5.529800 TCTTTTGGAAAGAACCTTTCGGTAG 59.470 40.000 11.79 7.71 44.73 3.18
2470 14783 2.774687 TGGAAAGAACCTTTCGGTAGC 58.225 47.619 11.79 1.24 44.73 3.58
2471 14784 2.105134 TGGAAAGAACCTTTCGGTAGCA 59.895 45.455 11.79 3.37 44.73 3.49
2472 14785 3.244770 TGGAAAGAACCTTTCGGTAGCAT 60.245 43.478 11.79 0.00 44.73 3.79
2473 14786 4.020039 TGGAAAGAACCTTTCGGTAGCATA 60.020 41.667 11.79 0.00 44.73 3.14
2474 14787 5.123936 GGAAAGAACCTTTCGGTAGCATAT 58.876 41.667 11.79 0.00 44.73 1.78
2475 14788 5.007724 GGAAAGAACCTTTCGGTAGCATATG 59.992 44.000 11.79 0.00 44.73 1.78
2476 14789 4.755266 AGAACCTTTCGGTAGCATATGT 57.245 40.909 4.29 0.00 44.73 2.29
2477 14790 4.694339 AGAACCTTTCGGTAGCATATGTC 58.306 43.478 4.29 0.00 44.73 3.06
2478 14791 4.406003 AGAACCTTTCGGTAGCATATGTCT 59.594 41.667 4.29 4.86 44.73 3.41
2479 14792 5.597182 AGAACCTTTCGGTAGCATATGTCTA 59.403 40.000 4.29 3.89 44.73 2.59
2480 14793 6.267928 AGAACCTTTCGGTAGCATATGTCTAT 59.732 38.462 4.29 0.00 44.73 1.98
2481 14794 5.784177 ACCTTTCGGTAGCATATGTCTATG 58.216 41.667 4.29 4.43 43.29 2.23
2482 14795 5.304614 ACCTTTCGGTAGCATATGTCTATGT 59.695 40.000 4.29 0.00 43.29 2.29
2483 14796 6.492429 ACCTTTCGGTAGCATATGTCTATGTA 59.508 38.462 4.29 0.00 43.29 2.29
2484 14797 6.807230 CCTTTCGGTAGCATATGTCTATGTAC 59.193 42.308 4.29 0.00 37.61 2.90
2485 14798 5.892160 TCGGTAGCATATGTCTATGTACC 57.108 43.478 4.29 5.85 37.88 3.34
2486 14799 5.567430 TCGGTAGCATATGTCTATGTACCT 58.433 41.667 4.29 0.00 38.38 3.08
2487 14800 6.008331 TCGGTAGCATATGTCTATGTACCTT 58.992 40.000 4.29 0.00 38.38 3.50
2488 14801 6.492429 TCGGTAGCATATGTCTATGTACCTTT 59.508 38.462 4.29 0.00 38.38 3.11
2489 14802 7.014905 TCGGTAGCATATGTCTATGTACCTTTT 59.985 37.037 4.29 0.00 38.38 2.27
2490 14803 7.656137 CGGTAGCATATGTCTATGTACCTTTTT 59.344 37.037 4.29 0.00 38.38 1.94
2514 14827 8.707938 TTTCCGAGTTAGTATTTTAACTAGCC 57.292 34.615 0.00 0.00 42.38 3.93
2515 14828 7.408756 TCCGAGTTAGTATTTTAACTAGCCA 57.591 36.000 0.00 0.00 42.38 4.75
2516 14829 8.015185 TCCGAGTTAGTATTTTAACTAGCCAT 57.985 34.615 0.00 0.00 42.38 4.40
2517 14830 9.135189 TCCGAGTTAGTATTTTAACTAGCCATA 57.865 33.333 0.00 0.00 42.38 2.74
2518 14831 9.189723 CCGAGTTAGTATTTTAACTAGCCATAC 57.810 37.037 0.00 0.00 42.38 2.39
2519 14832 9.189723 CGAGTTAGTATTTTAACTAGCCATACC 57.810 37.037 0.00 0.00 42.38 2.73
2520 14833 9.486497 GAGTTAGTATTTTAACTAGCCATACCC 57.514 37.037 0.00 0.00 42.38 3.69
2521 14834 8.146412 AGTTAGTATTTTAACTAGCCATACCCG 58.854 37.037 0.00 0.00 40.98 5.28
2522 14835 5.303165 AGTATTTTAACTAGCCATACCCGC 58.697 41.667 0.00 0.00 0.00 6.13
2523 14836 2.228138 TTTAACTAGCCATACCCGCG 57.772 50.000 0.00 0.00 0.00 6.46
2524 14837 0.249573 TTAACTAGCCATACCCGCGC 60.250 55.000 0.00 0.00 0.00 6.86
2525 14838 2.410638 TAACTAGCCATACCCGCGCG 62.411 60.000 25.67 25.67 0.00 6.86
2553 14866 4.955774 ACGCCCCGTTGACACGTC 62.956 66.667 0.00 0.00 45.62 4.34
2555 14868 4.651008 GCCCCGTTGACACGTCGA 62.651 66.667 0.00 0.00 45.62 4.20
2556 14869 2.260434 CCCCGTTGACACGTCGAT 59.740 61.111 0.00 0.00 45.62 3.59
2557 14870 1.507630 CCCCGTTGACACGTCGATA 59.492 57.895 0.00 0.00 45.62 2.92
2558 14871 0.799534 CCCCGTTGACACGTCGATAC 60.800 60.000 0.00 0.00 45.62 2.24
2588 14901 9.301153 AGTTGCTAACTTTTTGTGTCTAAATTG 57.699 29.630 0.00 0.00 39.04 2.32
2589 14902 8.539674 GTTGCTAACTTTTTGTGTCTAAATTGG 58.460 33.333 0.00 0.00 0.00 3.16
2590 14903 8.001881 TGCTAACTTTTTGTGTCTAAATTGGA 57.998 30.769 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.125552 CGGCGACTGCATGAGGAA 60.126 61.111 0.00 0.00 45.35 3.36
21 22 0.178855 TAGGTGGTTAGGCCTGGGTT 60.179 55.000 17.99 0.00 38.35 4.11
22 23 0.912968 GTAGGTGGTTAGGCCTGGGT 60.913 60.000 17.99 0.00 38.35 4.51
23 24 1.632965 GGTAGGTGGTTAGGCCTGGG 61.633 65.000 17.99 0.00 38.35 4.45
24 25 0.620700 AGGTAGGTGGTTAGGCCTGG 60.621 60.000 17.99 0.00 38.35 4.45
26 27 0.326332 GGAGGTAGGTGGTTAGGCCT 60.326 60.000 11.78 11.78 38.35 5.19
27 28 1.683418 CGGAGGTAGGTGGTTAGGCC 61.683 65.000 0.00 0.00 37.90 5.19
28 29 1.821258 CGGAGGTAGGTGGTTAGGC 59.179 63.158 0.00 0.00 0.00 3.93
29 30 1.683418 GGCGGAGGTAGGTGGTTAGG 61.683 65.000 0.00 0.00 0.00 2.69
31 32 1.686800 GGGCGGAGGTAGGTGGTTA 60.687 63.158 0.00 0.00 0.00 2.85
32 33 3.007323 GGGCGGAGGTAGGTGGTT 61.007 66.667 0.00 0.00 0.00 3.67
35 36 3.782443 GTGGGGCGGAGGTAGGTG 61.782 72.222 0.00 0.00 0.00 4.00
67 68 4.899239 GTGATGGCGGAGGGCGAG 62.899 72.222 0.00 0.00 44.92 5.03
71 72 4.838152 CACGGTGATGGCGGAGGG 62.838 72.222 0.74 0.00 0.00 4.30
72 73 3.605749 AACACGGTGATGGCGGAGG 62.606 63.158 16.29 0.00 0.00 4.30
73 74 1.671054 AAACACGGTGATGGCGGAG 60.671 57.895 16.29 0.00 0.00 4.63
74 75 1.963855 CAAACACGGTGATGGCGGA 60.964 57.895 16.29 0.00 0.00 5.54
75 76 2.560861 CAAACACGGTGATGGCGG 59.439 61.111 16.29 0.00 0.00 6.13
76 77 2.126888 GCAAACACGGTGATGGCG 60.127 61.111 16.29 0.00 0.00 5.69
77 78 2.258286 GGCAAACACGGTGATGGC 59.742 61.111 16.29 19.62 0.00 4.40
78 79 2.560861 CGGCAAACACGGTGATGG 59.439 61.111 16.29 1.05 0.00 3.51
79 80 2.126888 GCGGCAAACACGGTGATG 60.127 61.111 16.29 13.80 0.00 3.07
97 98 0.896019 ATAGAGAGATGGTCGGGGCG 60.896 60.000 0.00 0.00 0.00 6.13
98 99 0.605589 CATAGAGAGATGGTCGGGGC 59.394 60.000 0.00 0.00 0.00 5.80
99 100 0.605589 GCATAGAGAGATGGTCGGGG 59.394 60.000 0.00 0.00 0.00 5.73
101 102 1.543802 GAGGCATAGAGAGATGGTCGG 59.456 57.143 0.00 0.00 0.00 4.79
103 104 2.030363 CACGAGGCATAGAGAGATGGTC 60.030 54.545 0.00 0.00 0.00 4.02
105 106 2.030363 GTCACGAGGCATAGAGAGATGG 60.030 54.545 0.00 0.00 0.00 3.51
107 108 3.222173 AGTCACGAGGCATAGAGAGAT 57.778 47.619 0.00 0.00 0.00 2.75
108 109 2.719531 AGTCACGAGGCATAGAGAGA 57.280 50.000 0.00 0.00 0.00 3.10
109 110 3.791973 AAAGTCACGAGGCATAGAGAG 57.208 47.619 0.00 0.00 0.00 3.20
110 111 5.359860 TCAATAAAGTCACGAGGCATAGAGA 59.640 40.000 0.00 0.00 0.00 3.10
113 114 5.580691 TGTTCAATAAAGTCACGAGGCATAG 59.419 40.000 0.00 0.00 0.00 2.23
114 115 5.483811 TGTTCAATAAAGTCACGAGGCATA 58.516 37.500 0.00 0.00 0.00 3.14
115 116 4.323417 TGTTCAATAAAGTCACGAGGCAT 58.677 39.130 0.00 0.00 0.00 4.40
116 117 3.734463 TGTTCAATAAAGTCACGAGGCA 58.266 40.909 0.00 0.00 0.00 4.75
122 123 7.254852 TCACCAAAGTTGTTCAATAAAGTCAC 58.745 34.615 0.00 0.00 0.00 3.67
125 126 7.433680 GGATCACCAAAGTTGTTCAATAAAGT 58.566 34.615 0.00 0.00 35.97 2.66
126 127 6.582295 CGGATCACCAAAGTTGTTCAATAAAG 59.418 38.462 0.00 0.00 35.59 1.85
128 129 5.563867 GCGGATCACCAAAGTTGTTCAATAA 60.564 40.000 0.00 0.00 35.59 1.40
129 130 4.083003 GCGGATCACCAAAGTTGTTCAATA 60.083 41.667 0.00 0.00 35.59 1.90
130 131 3.305335 GCGGATCACCAAAGTTGTTCAAT 60.305 43.478 0.00 0.00 35.59 2.57
131 132 2.034053 GCGGATCACCAAAGTTGTTCAA 59.966 45.455 0.00 0.00 35.59 2.69
133 134 1.880027 AGCGGATCACCAAAGTTGTTC 59.120 47.619 0.00 0.00 35.59 3.18
134 135 1.608590 CAGCGGATCACCAAAGTTGTT 59.391 47.619 0.00 0.00 35.59 2.83
136 137 0.109597 GCAGCGGATCACCAAAGTTG 60.110 55.000 0.00 0.00 35.59 3.16
137 138 0.537143 TGCAGCGGATCACCAAAGTT 60.537 50.000 0.00 0.00 35.59 2.66
138 139 1.073025 TGCAGCGGATCACCAAAGT 59.927 52.632 0.00 0.00 35.59 2.66
140 141 3.667087 GTGCAGCGGATCACCAAA 58.333 55.556 0.00 0.00 35.59 3.28
164 165 3.598264 TCATCTTATAGGGGTGGGGAAG 58.402 50.000 0.00 0.00 0.00 3.46
167 168 2.578021 CCATCATCTTATAGGGGTGGGG 59.422 54.545 0.00 0.00 0.00 4.96
168 169 2.578021 CCCATCATCTTATAGGGGTGGG 59.422 54.545 0.00 0.00 39.10 4.61
173 174 5.251468 TCAACATCCCCATCATCTTATAGGG 59.749 44.000 0.00 0.00 39.29 3.53
175 176 7.555554 GGAATCAACATCCCCATCATCTTATAG 59.444 40.741 0.00 0.00 0.00 1.31
176 177 7.405292 GGAATCAACATCCCCATCATCTTATA 58.595 38.462 0.00 0.00 0.00 0.98
177 178 6.251471 GGAATCAACATCCCCATCATCTTAT 58.749 40.000 0.00 0.00 0.00 1.73
180 181 4.109877 GGAATCAACATCCCCATCATCT 57.890 45.455 0.00 0.00 0.00 2.90
189 190 5.775195 CCTTAATTAGGGGGAATCAACATCC 59.225 44.000 5.72 0.00 40.67 3.51
190 191 5.243954 GCCTTAATTAGGGGGAATCAACATC 59.756 44.000 14.93 0.00 44.91 3.06
191 192 5.147767 GCCTTAATTAGGGGGAATCAACAT 58.852 41.667 14.93 0.00 44.91 2.71
195 196 2.449345 GGGCCTTAATTAGGGGGAATCA 59.551 50.000 14.93 0.00 44.91 2.57
198 199 1.856920 CAGGGCCTTAATTAGGGGGAA 59.143 52.381 14.93 0.00 44.91 3.97
199 200 1.275357 ACAGGGCCTTAATTAGGGGGA 60.275 52.381 14.93 0.00 44.91 4.81
200 201 1.231963 ACAGGGCCTTAATTAGGGGG 58.768 55.000 14.93 6.35 44.91 5.40
201 202 3.031013 CAAACAGGGCCTTAATTAGGGG 58.969 50.000 14.93 8.61 44.91 4.79
204 205 4.770010 TGAACCAAACAGGGCCTTAATTAG 59.230 41.667 1.32 0.00 43.89 1.73
206 207 3.582164 TGAACCAAACAGGGCCTTAATT 58.418 40.909 1.32 0.00 43.89 1.40
208 209 2.757894 TGAACCAAACAGGGCCTTAA 57.242 45.000 1.32 0.00 43.89 1.85
211 212 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
212 213 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
213 214 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
214 215 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
246 247 7.123847 GGACTTGAGACTTATAAGTTGGGACTA 59.876 40.741 18.96 6.16 39.88 2.59
250 251 5.189934 AGGGACTTGAGACTTATAAGTTGGG 59.810 44.000 18.96 10.37 34.84 4.12
251 252 6.301169 AGGGACTTGAGACTTATAAGTTGG 57.699 41.667 18.96 10.07 34.84 3.77
256 257 8.896722 ACTTCTTAGGGACTTGAGACTTATAA 57.103 34.615 0.00 0.00 41.75 0.98
257 258 7.560626 GGACTTCTTAGGGACTTGAGACTTATA 59.439 40.741 0.00 0.00 41.75 0.98
259 260 5.715753 GGACTTCTTAGGGACTTGAGACTTA 59.284 44.000 0.00 0.00 41.75 2.24
261 262 4.090819 GGACTTCTTAGGGACTTGAGACT 58.909 47.826 0.00 0.00 41.75 3.24
262 263 3.196039 GGGACTTCTTAGGGACTTGAGAC 59.804 52.174 0.00 0.00 41.75 3.36
264 265 3.445987 AGGGACTTCTTAGGGACTTGAG 58.554 50.000 0.00 0.00 34.75 3.02
265 266 3.562108 AGGGACTTCTTAGGGACTTGA 57.438 47.619 0.00 0.00 34.75 3.02
266 267 3.451540 GGTAGGGACTTCTTAGGGACTTG 59.548 52.174 0.00 0.00 39.49 3.16
267 268 3.340357 AGGTAGGGACTTCTTAGGGACTT 59.660 47.826 0.00 0.00 39.49 3.01
271 272 3.117552 ACAGGTAGGGACTTCTTAGGG 57.882 52.381 0.00 0.00 41.75 3.53
272 273 4.323562 CCAAACAGGTAGGGACTTCTTAGG 60.324 50.000 0.00 0.00 41.75 2.69
273 274 4.833390 CCAAACAGGTAGGGACTTCTTAG 58.167 47.826 0.00 0.00 41.75 2.18
275 276 3.790089 CCAAACAGGTAGGGACTTCTT 57.210 47.619 0.00 0.00 41.75 2.52
287 288 2.938956 AGTCTCAGGAACCAAACAGG 57.061 50.000 0.00 0.00 45.67 4.00
289 290 7.074653 ACTTATAAGTCTCAGGAACCAAACA 57.925 36.000 12.50 0.00 32.86 2.83
310 311 9.448587 AGTTGTAATATGGTCTTATAGGGACTT 57.551 33.333 7.52 0.00 41.75 3.01
320 321 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
329 330 9.372189 GGGACTTATAGGGACTTATAGTTGTAA 57.628 37.037 0.00 0.00 41.75 2.41
330 331 8.740512 AGGGACTTATAGGGACTTATAGTTGTA 58.259 37.037 0.00 0.00 34.75 2.41
331 332 7.602868 AGGGACTTATAGGGACTTATAGTTGT 58.397 38.462 0.00 0.00 34.75 3.32
334 335 6.571180 AGGAGGGACTTATAGGGACTTATAGT 59.429 42.308 0.00 0.00 41.55 2.12
335 336 7.046891 AGGAGGGACTTATAGGGACTTATAG 57.953 44.000 0.00 0.00 41.55 1.31
336 337 7.075915 TCAAGGAGGGACTTATAGGGACTTATA 59.924 40.741 0.00 0.00 41.55 0.98
337 338 5.970692 AGGAGGGACTTATAGGGACTTAT 57.029 43.478 0.00 0.00 41.55 1.73
338 339 5.197189 TCAAGGAGGGACTTATAGGGACTTA 59.803 44.000 0.00 0.00 41.55 2.24
341 342 3.898741 CTCAAGGAGGGACTTATAGGGAC 59.101 52.174 0.00 0.00 41.55 4.46
344 345 4.810345 ACTCTCAAGGAGGGACTTATAGG 58.190 47.826 0.00 0.00 45.83 2.57
348 349 4.405756 AAGACTCTCAAGGAGGGACTTA 57.594 45.455 8.68 0.00 41.64 2.24
351 352 5.187967 TGAAATAAGACTCTCAAGGAGGGAC 59.812 44.000 0.00 0.00 45.83 4.46
353 354 5.683876 TGAAATAAGACTCTCAAGGAGGG 57.316 43.478 0.00 0.00 45.83 4.30
368 369 7.615365 AGTGGGCATTTGAGACTTATGAAATAA 59.385 33.333 0.00 0.00 36.20 1.40
370 371 5.954150 AGTGGGCATTTGAGACTTATGAAAT 59.046 36.000 0.00 0.00 0.00 2.17
372 373 4.922206 AGTGGGCATTTGAGACTTATGAA 58.078 39.130 0.00 0.00 0.00 2.57
373 374 4.574674 AGTGGGCATTTGAGACTTATGA 57.425 40.909 0.00 0.00 0.00 2.15
375 376 6.948309 ACTTAAAGTGGGCATTTGAGACTTAT 59.052 34.615 7.52 0.00 30.26 1.73
376 377 6.303839 ACTTAAAGTGGGCATTTGAGACTTA 58.696 36.000 7.52 0.00 30.26 2.24
377 378 5.140454 ACTTAAAGTGGGCATTTGAGACTT 58.860 37.500 7.52 0.00 30.26 3.01
380 381 4.079253 GGACTTAAAGTGGGCATTTGAGA 58.921 43.478 7.52 0.00 30.26 3.27
385 386 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
387 388 4.786454 ACTTATAGGGACTTAAAGTGGGCA 59.214 41.667 0.00 0.00 39.58 5.36
388 389 5.369409 ACTTATAGGGACTTAAAGTGGGC 57.631 43.478 0.00 0.00 39.58 5.36
389 390 6.158169 AGGAACTTATAGGGACTTAAAGTGGG 59.842 42.308 0.00 0.00 39.96 4.61
390 391 7.196637 AGGAACTTATAGGGACTTAAAGTGG 57.803 40.000 0.00 0.00 39.96 4.00
391 392 7.125963 AGGAGGAACTTATAGGGACTTAAAGTG 59.874 40.741 0.00 0.00 41.55 3.16
393 394 7.125963 ACAGGAGGAACTTATAGGGACTTAAAG 59.874 40.741 0.00 0.00 41.55 1.85
396 397 6.101274 ACAGGAGGAACTTATAGGGACTTA 57.899 41.667 0.00 0.00 41.55 2.24
397 398 4.961585 ACAGGAGGAACTTATAGGGACTT 58.038 43.478 0.00 0.00 41.55 3.01
398 399 4.628661 ACAGGAGGAACTTATAGGGACT 57.371 45.455 0.00 0.00 41.55 3.85
401 402 4.227527 ACCAAACAGGAGGAACTTATAGGG 59.772 45.833 0.00 0.00 41.55 3.53
402 403 5.437191 ACCAAACAGGAGGAACTTATAGG 57.563 43.478 0.00 0.00 41.55 2.57
403 404 8.319146 TCTAAACCAAACAGGAGGAACTTATAG 58.681 37.037 0.00 0.00 41.55 1.31
405 406 7.086685 TCTAAACCAAACAGGAGGAACTTAT 57.913 36.000 0.00 0.00 41.55 1.73
409 410 4.459337 CCATCTAAACCAAACAGGAGGAAC 59.541 45.833 0.00 0.00 41.22 3.62
410 411 4.508405 CCCATCTAAACCAAACAGGAGGAA 60.508 45.833 0.00 0.00 41.22 3.36
411 412 3.010138 CCCATCTAAACCAAACAGGAGGA 59.990 47.826 0.00 0.00 41.22 3.71
413 414 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
414 415 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
416 417 7.499232 CCTATAAGTCCCATCTAAACCAAACAG 59.501 40.741 0.00 0.00 0.00 3.16
417 418 7.343357 CCTATAAGTCCCATCTAAACCAAACA 58.657 38.462 0.00 0.00 0.00 2.83
418 419 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
420 421 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
421 422 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
423 424 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
424 425 8.401955 AAAAGTCCCTATAAGTCCCATCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
425 426 8.401955 AAAAAGTCCCTATAAGTCCCATCTAA 57.598 34.615 0.00 0.00 0.00 2.10
427 428 6.910259 AAAAAGTCCCTATAAGTCCCATCT 57.090 37.500 0.00 0.00 0.00 2.90
447 448 8.715190 AACTTATTGGCTTAGGGACTTAAAAA 57.285 30.769 0.00 0.00 41.75 1.94
448 449 7.395206 GGAACTTATTGGCTTAGGGACTTAAAA 59.605 37.037 0.00 0.00 41.75 1.52
450 451 6.216868 AGGAACTTATTGGCTTAGGGACTTAA 59.783 38.462 0.00 0.00 34.75 1.85
453 454 4.080299 CAGGAACTTATTGGCTTAGGGACT 60.080 45.833 0.00 0.00 39.39 3.85
454 455 4.080526 TCAGGAACTTATTGGCTTAGGGAC 60.081 45.833 0.00 0.00 34.60 4.46
455 456 4.108570 TCAGGAACTTATTGGCTTAGGGA 58.891 43.478 0.00 0.00 34.60 4.20
456 457 4.503714 TCAGGAACTTATTGGCTTAGGG 57.496 45.455 0.00 0.00 34.60 3.53
458 459 6.817765 TGTTTCAGGAACTTATTGGCTTAG 57.182 37.500 0.00 0.00 39.08 2.18
459 460 7.068839 TGTTTGTTTCAGGAACTTATTGGCTTA 59.931 33.333 0.00 0.00 39.08 3.09
460 461 6.127196 TGTTTGTTTCAGGAACTTATTGGCTT 60.127 34.615 0.00 0.00 39.08 4.35
463 464 5.983118 GGTGTTTGTTTCAGGAACTTATTGG 59.017 40.000 0.00 0.00 39.08 3.16
464 465 5.983118 GGGTGTTTGTTTCAGGAACTTATTG 59.017 40.000 0.00 0.00 39.08 1.90
468 469 3.699538 GAGGGTGTTTGTTTCAGGAACTT 59.300 43.478 0.00 0.00 39.08 2.66
469 470 3.053619 AGAGGGTGTTTGTTTCAGGAACT 60.054 43.478 0.00 0.00 39.08 3.01
471 472 3.662759 AGAGGGTGTTTGTTTCAGGAA 57.337 42.857 0.00 0.00 0.00 3.36
472 473 4.410883 TCTTAGAGGGTGTTTGTTTCAGGA 59.589 41.667 0.00 0.00 0.00 3.86
473 474 4.714632 TCTTAGAGGGTGTTTGTTTCAGG 58.285 43.478 0.00 0.00 0.00 3.86
475 476 7.311092 TCTATCTTAGAGGGTGTTTGTTTCA 57.689 36.000 0.00 0.00 0.00 2.69
478 479 9.838339 CATTATCTATCTTAGAGGGTGTTTGTT 57.162 33.333 0.00 0.00 38.38 2.83
479 480 9.213777 TCATTATCTATCTTAGAGGGTGTTTGT 57.786 33.333 0.00 0.00 38.38 2.83
482 483 7.038658 GCCTCATTATCTATCTTAGAGGGTGTT 60.039 40.741 0.00 0.00 41.06 3.32
484 485 6.667414 AGCCTCATTATCTATCTTAGAGGGTG 59.333 42.308 9.21 0.00 46.95 4.61
485 486 6.810500 AGCCTCATTATCTATCTTAGAGGGT 58.189 40.000 0.00 0.00 44.84 4.34
486 487 8.859090 CATAGCCTCATTATCTATCTTAGAGGG 58.141 40.741 0.00 0.00 41.06 4.30
487 488 9.639563 TCATAGCCTCATTATCTATCTTAGAGG 57.360 37.037 0.00 0.00 43.04 3.69
492 493 9.941325 CAAAGTCATAGCCTCATTATCTATCTT 57.059 33.333 0.00 0.00 0.00 2.40
494 495 9.364989 GACAAAGTCATAGCCTCATTATCTATC 57.635 37.037 0.00 0.00 32.09 2.08
495 496 9.099071 AGACAAAGTCATAGCCTCATTATCTAT 57.901 33.333 0.00 0.00 34.60 1.98
517 5010 7.904564 ACCAGCCCCACTATATATTATAAGACA 59.095 37.037 0.00 0.00 0.00 3.41
518 5011 8.320338 ACCAGCCCCACTATATATTATAAGAC 57.680 38.462 0.00 0.00 0.00 3.01
521 5014 8.927059 AGAACCAGCCCCACTATATATTATAA 57.073 34.615 0.00 0.00 0.00 0.98
524 5017 7.023120 AGAAGAACCAGCCCCACTATATATTA 58.977 38.462 0.00 0.00 0.00 0.98
525 5018 5.852250 AGAAGAACCAGCCCCACTATATATT 59.148 40.000 0.00 0.00 0.00 1.28
529 5022 3.039011 GAGAAGAACCAGCCCCACTATA 58.961 50.000 0.00 0.00 0.00 1.31
579 5072 3.703556 TCATGTTTTCTTGTTCCCAAGCA 59.296 39.130 0.00 0.00 46.33 3.91
589 5082 5.270083 TGTTGCGTTAGTCATGTTTTCTTG 58.730 37.500 0.00 0.00 0.00 3.02
685 5184 5.926542 GCAATACGGCAAATAGTGATAGAGA 59.073 40.000 0.00 0.00 0.00 3.10
723 5222 8.884726 GTTGTTTGTTTGGGCTAATTTTCTTAA 58.115 29.630 0.00 0.00 0.00 1.85
724 5223 8.041323 TGTTGTTTGTTTGGGCTAATTTTCTTA 58.959 29.630 0.00 0.00 0.00 2.10
726 5225 6.315144 GTGTTGTTTGTTTGGGCTAATTTTCT 59.685 34.615 0.00 0.00 0.00 2.52
727 5226 6.092807 TGTGTTGTTTGTTTGGGCTAATTTTC 59.907 34.615 0.00 0.00 0.00 2.29
728 5227 5.940470 TGTGTTGTTTGTTTGGGCTAATTTT 59.060 32.000 0.00 0.00 0.00 1.82
729 5228 5.352846 GTGTGTTGTTTGTTTGGGCTAATTT 59.647 36.000 0.00 0.00 0.00 1.82
730 5229 4.873259 GTGTGTTGTTTGTTTGGGCTAATT 59.127 37.500 0.00 0.00 0.00 1.40
817 5325 6.837048 TGGTTAGGATAGAATAGTGCTACACA 59.163 38.462 0.00 0.00 36.74 3.72
861 5376 6.661805 GGAGGGTGTCTAAATCATTGGTTTAA 59.338 38.462 3.83 0.00 0.00 1.52
867 5382 4.137116 TCGGAGGGTGTCTAAATCATTG 57.863 45.455 0.00 0.00 0.00 2.82
875 5390 5.104193 ACTCTTAACTATCGGAGGGTGTCTA 60.104 44.000 0.00 0.00 0.00 2.59
990 5511 1.153289 CTTGGCCATGGACGAGAGG 60.153 63.158 29.18 3.25 36.77 3.69
1047 5573 0.462581 GCTGGCTCCGTTGATCATCA 60.463 55.000 0.00 0.00 0.00 3.07
1110 10127 2.030412 CTGTACACCGTGCAGCCA 59.970 61.111 0.00 0.00 39.14 4.75
1257 10274 2.575993 CAGCGACAGACCTCCCAG 59.424 66.667 0.00 0.00 0.00 4.45
1606 10638 3.708631 TGGCTAGAGAAGAAGAGGATTGG 59.291 47.826 0.00 0.00 0.00 3.16
1633 10665 9.496873 GTACTATCAGTCTCATCATGTACTACT 57.503 37.037 0.00 0.00 0.00 2.57
1650 10716 2.584236 ACCGCCTACAGGTACTATCAG 58.416 52.381 0.00 0.00 40.80 2.90
1651 10717 2.742428 ACCGCCTACAGGTACTATCA 57.258 50.000 0.00 0.00 40.80 2.15
1652 10718 2.954318 TGAACCGCCTACAGGTACTATC 59.046 50.000 0.00 0.00 41.95 2.08
1653 10719 3.022557 TGAACCGCCTACAGGTACTAT 57.977 47.619 0.00 0.00 41.95 2.12
1654 10720 2.512692 TGAACCGCCTACAGGTACTA 57.487 50.000 0.00 0.00 41.95 1.82
1655 10721 1.480954 CATGAACCGCCTACAGGTACT 59.519 52.381 0.00 0.00 41.95 2.73
1707 10773 3.562557 GTCTTCAGTTCGGGCAAAAACTA 59.437 43.478 0.00 0.00 34.05 2.24
1770 11113 7.926018 GTGTTGAGATTTTGGTATTGAAAACCT 59.074 33.333 0.00 0.00 37.91 3.50
1835 11178 2.480419 AGGCGAAGAAACACATCGAAAG 59.520 45.455 0.00 0.00 41.35 2.62
1854 11197 7.992180 AAAAGAAAAATATTATCGCTGCAGG 57.008 32.000 17.12 5.82 0.00 4.85
1980 11338 1.666888 CGCTGCTTGAATTGTTGACCC 60.667 52.381 0.00 0.00 0.00 4.46
1999 11357 5.163302 TGTCAGTTTGGTTATGTTTGTCG 57.837 39.130 0.00 0.00 0.00 4.35
2085 11710 7.534085 TTCTGTATTAAATAAGTCCAGTGCG 57.466 36.000 0.00 0.00 0.00 5.34
2113 13315 8.934023 TTATCCAGTAGAATTTCAAAAGGTGT 57.066 30.769 0.00 0.00 0.00 4.16
2188 14493 2.535588 CAAGCATGCACTTTTGGCC 58.464 52.632 21.98 0.00 0.00 5.36
2287 14597 4.875561 ACTCTAGAAACACCTTGAGTCC 57.124 45.455 0.00 0.00 42.59 3.85
2360 14673 5.346181 AAAATCACCCTTTGTCGGAAAAA 57.654 34.783 0.00 0.00 0.00 1.94
2361 14674 5.346181 AAAAATCACCCTTTGTCGGAAAA 57.654 34.783 0.00 0.00 0.00 2.29
2362 14675 6.658188 ATAAAAATCACCCTTTGTCGGAAA 57.342 33.333 0.00 0.00 0.00 3.13
2363 14676 6.265649 TCAATAAAAATCACCCTTTGTCGGAA 59.734 34.615 0.00 0.00 0.00 4.30
2364 14677 5.770663 TCAATAAAAATCACCCTTTGTCGGA 59.229 36.000 0.00 0.00 0.00 4.55
2365 14678 5.861787 GTCAATAAAAATCACCCTTTGTCGG 59.138 40.000 0.00 0.00 0.00 4.79
2366 14679 6.677913 AGTCAATAAAAATCACCCTTTGTCG 58.322 36.000 0.00 0.00 0.00 4.35
2367 14680 9.974980 TTTAGTCAATAAAAATCACCCTTTGTC 57.025 29.630 0.00 0.00 30.28 3.18
2371 14684 9.942850 CCATTTTAGTCAATAAAAATCACCCTT 57.057 29.630 0.00 0.00 44.43 3.95
2372 14685 9.320295 TCCATTTTAGTCAATAAAAATCACCCT 57.680 29.630 0.00 0.00 44.43 4.34
2373 14686 9.586435 CTCCATTTTAGTCAATAAAAATCACCC 57.414 33.333 0.00 0.00 44.43 4.61
2374 14687 9.087424 GCTCCATTTTAGTCAATAAAAATCACC 57.913 33.333 0.00 0.00 44.43 4.02
2375 14688 9.638239 TGCTCCATTTTAGTCAATAAAAATCAC 57.362 29.630 0.00 0.00 44.43 3.06
2382 14695 9.851686 AGACATATGCTCCATTTTAGTCAATAA 57.148 29.630 1.58 0.00 0.00 1.40
2385 14698 9.276590 CATAGACATATGCTCCATTTTAGTCAA 57.723 33.333 1.58 0.00 32.79 3.18
2386 14699 7.879677 CCATAGACATATGCTCCATTTTAGTCA 59.120 37.037 1.58 0.00 37.97 3.41
2387 14700 7.335422 CCCATAGACATATGCTCCATTTTAGTC 59.665 40.741 1.58 0.00 37.97 2.59
2388 14701 7.170965 CCCATAGACATATGCTCCATTTTAGT 58.829 38.462 1.58 0.00 37.97 2.24
2389 14702 7.170965 ACCCATAGACATATGCTCCATTTTAG 58.829 38.462 1.58 0.00 37.97 1.85
2390 14703 7.090319 ACCCATAGACATATGCTCCATTTTA 57.910 36.000 1.58 0.00 37.97 1.52
2391 14704 5.957132 ACCCATAGACATATGCTCCATTTT 58.043 37.500 1.58 0.00 37.97 1.82
2392 14705 5.589367 ACCCATAGACATATGCTCCATTT 57.411 39.130 1.58 0.00 37.97 2.32
2393 14706 6.216251 ACATACCCATAGACATATGCTCCATT 59.784 38.462 1.58 0.00 37.97 3.16
2394 14707 5.728253 ACATACCCATAGACATATGCTCCAT 59.272 40.000 1.58 0.00 37.97 3.41
2395 14708 5.093677 ACATACCCATAGACATATGCTCCA 58.906 41.667 1.58 0.00 37.97 3.86
2396 14709 5.683876 ACATACCCATAGACATATGCTCC 57.316 43.478 1.58 0.00 37.97 4.70
2397 14710 7.147655 ACCATACATACCCATAGACATATGCTC 60.148 40.741 1.58 0.00 37.97 4.26
2398 14711 6.673978 ACCATACATACCCATAGACATATGCT 59.326 38.462 1.58 3.84 37.97 3.79
2399 14712 6.889198 ACCATACATACCCATAGACATATGC 58.111 40.000 1.58 0.00 37.97 3.14
2400 14713 9.383519 GAAACCATACATACCCATAGACATATG 57.616 37.037 0.00 0.00 38.85 1.78
2401 14714 9.111519 TGAAACCATACATACCCATAGACATAT 57.888 33.333 0.00 0.00 0.00 1.78
2402 14715 8.499288 TGAAACCATACATACCCATAGACATA 57.501 34.615 0.00 0.00 0.00 2.29
2403 14716 7.072454 ACTGAAACCATACATACCCATAGACAT 59.928 37.037 0.00 0.00 0.00 3.06
2404 14717 6.385759 ACTGAAACCATACATACCCATAGACA 59.614 38.462 0.00 0.00 0.00 3.41
2405 14718 6.827727 ACTGAAACCATACATACCCATAGAC 58.172 40.000 0.00 0.00 0.00 2.59
2406 14719 6.844388 AGACTGAAACCATACATACCCATAGA 59.156 38.462 0.00 0.00 0.00 1.98
2407 14720 6.931281 CAGACTGAAACCATACATACCCATAG 59.069 42.308 0.00 0.00 0.00 2.23
2408 14721 6.687901 GCAGACTGAAACCATACATACCCATA 60.688 42.308 6.65 0.00 0.00 2.74
2409 14722 5.684704 CAGACTGAAACCATACATACCCAT 58.315 41.667 0.00 0.00 0.00 4.00
2410 14723 4.625324 GCAGACTGAAACCATACATACCCA 60.625 45.833 6.65 0.00 0.00 4.51
2411 14724 3.877508 GCAGACTGAAACCATACATACCC 59.122 47.826 6.65 0.00 0.00 3.69
2412 14725 4.770795 AGCAGACTGAAACCATACATACC 58.229 43.478 6.65 0.00 0.00 2.73
2413 14726 5.419542 TGAGCAGACTGAAACCATACATAC 58.580 41.667 6.65 0.00 0.00 2.39
2414 14727 5.675684 TGAGCAGACTGAAACCATACATA 57.324 39.130 6.65 0.00 0.00 2.29
2415 14728 4.558226 TGAGCAGACTGAAACCATACAT 57.442 40.909 6.65 0.00 0.00 2.29
2416 14729 4.350368 TTGAGCAGACTGAAACCATACA 57.650 40.909 6.65 0.00 0.00 2.29
2417 14730 5.886960 ATTTGAGCAGACTGAAACCATAC 57.113 39.130 6.65 0.00 31.54 2.39
2418 14731 6.472016 TGTATTTGAGCAGACTGAAACCATA 58.528 36.000 6.65 0.00 31.54 2.74
2419 14732 5.316167 TGTATTTGAGCAGACTGAAACCAT 58.684 37.500 6.65 0.00 31.54 3.55
2420 14733 4.713553 TGTATTTGAGCAGACTGAAACCA 58.286 39.130 6.65 0.00 31.54 3.67
2421 14734 5.689383 TTGTATTTGAGCAGACTGAAACC 57.311 39.130 6.65 0.00 31.54 3.27
2422 14735 7.588512 AGAATTGTATTTGAGCAGACTGAAAC 58.411 34.615 6.65 0.00 31.54 2.78
2423 14736 7.750229 AGAATTGTATTTGAGCAGACTGAAA 57.250 32.000 6.65 0.00 33.37 2.69
2424 14737 7.750229 AAGAATTGTATTTGAGCAGACTGAA 57.250 32.000 6.65 0.00 0.00 3.02
2425 14738 7.750229 AAAGAATTGTATTTGAGCAGACTGA 57.250 32.000 6.65 0.00 0.00 3.41
2426 14739 7.327761 CCAAAAGAATTGTATTTGAGCAGACTG 59.672 37.037 0.00 0.00 36.41 3.51
2427 14740 7.231317 TCCAAAAGAATTGTATTTGAGCAGACT 59.769 33.333 9.98 0.00 36.41 3.24
2428 14741 7.370383 TCCAAAAGAATTGTATTTGAGCAGAC 58.630 34.615 9.98 0.00 36.41 3.51
2429 14742 7.523293 TCCAAAAGAATTGTATTTGAGCAGA 57.477 32.000 9.98 0.76 36.41 4.26
2430 14743 8.592105 TTTCCAAAAGAATTGTATTTGAGCAG 57.408 30.769 9.98 0.00 36.41 4.24
2431 14744 8.420222 TCTTTCCAAAAGAATTGTATTTGAGCA 58.580 29.630 0.00 0.00 36.41 4.26
2432 14745 8.816640 TCTTTCCAAAAGAATTGTATTTGAGC 57.183 30.769 0.00 0.00 36.41 4.26
2434 14747 9.541143 GGTTCTTTCCAAAAGAATTGTATTTGA 57.459 29.630 15.63 0.00 38.39 2.69
2435 14748 9.546428 AGGTTCTTTCCAAAAGAATTGTATTTG 57.454 29.630 15.63 0.00 38.39 2.32
2438 14751 9.764363 GAAAGGTTCTTTCCAAAAGAATTGTAT 57.236 29.630 15.63 4.84 38.39 2.29
2439 14752 7.918562 CGAAAGGTTCTTTCCAAAAGAATTGTA 59.081 33.333 15.63 0.00 38.39 2.41
2440 14753 6.756542 CGAAAGGTTCTTTCCAAAAGAATTGT 59.243 34.615 15.63 5.49 38.39 2.71
2441 14754 7.165427 CGAAAGGTTCTTTCCAAAAGAATTG 57.835 36.000 15.63 3.33 38.39 2.32
2455 14768 7.738414 CATAGACATATGCTACCGAAAGGTTCT 60.738 40.741 1.58 0.00 46.96 3.01
2456 14769 6.366332 CATAGACATATGCTACCGAAAGGTTC 59.634 42.308 1.58 0.00 46.96 3.62
2457 14770 6.223852 CATAGACATATGCTACCGAAAGGTT 58.776 40.000 1.58 0.00 46.96 3.50
2460 14773 6.807230 GGTACATAGACATATGCTACCGAAAG 59.193 42.308 1.58 0.00 42.26 2.62
2461 14774 6.492429 AGGTACATAGACATATGCTACCGAAA 59.508 38.462 1.58 0.00 42.86 3.46
2462 14775 6.008331 AGGTACATAGACATATGCTACCGAA 58.992 40.000 1.58 0.00 42.86 4.30
2463 14776 5.567430 AGGTACATAGACATATGCTACCGA 58.433 41.667 1.58 0.00 42.86 4.69
2464 14777 5.899120 AGGTACATAGACATATGCTACCG 57.101 43.478 1.58 3.88 42.86 4.02
2465 14778 8.904099 AAAAAGGTACATAGACATATGCTACC 57.096 34.615 1.58 5.82 42.26 3.18
2488 14801 9.154847 GGCTAGTTAAAATACTAACTCGGAAAA 57.845 33.333 0.00 0.00 40.49 2.29
2489 14802 8.313292 TGGCTAGTTAAAATACTAACTCGGAAA 58.687 33.333 0.00 0.00 40.49 3.13
2490 14803 7.839907 TGGCTAGTTAAAATACTAACTCGGAA 58.160 34.615 0.00 0.00 40.49 4.30
2491 14804 7.408756 TGGCTAGTTAAAATACTAACTCGGA 57.591 36.000 0.00 0.00 40.49 4.55
2492 14805 9.189723 GTATGGCTAGTTAAAATACTAACTCGG 57.810 37.037 0.00 0.00 40.49 4.63
2493 14806 9.189723 GGTATGGCTAGTTAAAATACTAACTCG 57.810 37.037 0.00 0.00 40.49 4.18
2494 14807 9.486497 GGGTATGGCTAGTTAAAATACTAACTC 57.514 37.037 0.00 0.00 40.49 3.01
2495 14808 8.146412 CGGGTATGGCTAGTTAAAATACTAACT 58.854 37.037 1.97 1.97 43.12 2.24
2496 14809 7.095481 GCGGGTATGGCTAGTTAAAATACTAAC 60.095 40.741 0.00 0.00 30.63 2.34
2497 14810 6.930722 GCGGGTATGGCTAGTTAAAATACTAA 59.069 38.462 0.00 0.00 30.63 2.24
2498 14811 6.458210 GCGGGTATGGCTAGTTAAAATACTA 58.542 40.000 0.00 0.00 0.00 1.82
2499 14812 5.303165 GCGGGTATGGCTAGTTAAAATACT 58.697 41.667 0.00 0.00 0.00 2.12
2500 14813 4.151157 CGCGGGTATGGCTAGTTAAAATAC 59.849 45.833 0.00 0.00 0.00 1.89
2501 14814 4.309099 CGCGGGTATGGCTAGTTAAAATA 58.691 43.478 0.00 0.00 0.00 1.40
2502 14815 3.135994 CGCGGGTATGGCTAGTTAAAAT 58.864 45.455 0.00 0.00 0.00 1.82
2503 14816 2.553086 CGCGGGTATGGCTAGTTAAAA 58.447 47.619 0.00 0.00 0.00 1.52
2504 14817 1.807377 GCGCGGGTATGGCTAGTTAAA 60.807 52.381 8.83 0.00 0.00 1.52
2505 14818 0.249573 GCGCGGGTATGGCTAGTTAA 60.250 55.000 8.83 0.00 0.00 2.01
2506 14819 1.364901 GCGCGGGTATGGCTAGTTA 59.635 57.895 8.83 0.00 0.00 2.24
2507 14820 2.108362 GCGCGGGTATGGCTAGTT 59.892 61.111 8.83 0.00 0.00 2.24
2508 14821 4.280494 CGCGCGGGTATGGCTAGT 62.280 66.667 24.84 0.00 0.00 2.57
2547 14860 8.907562 AGTTAGCAACTTTCGTATCGACGTGT 62.908 42.308 0.00 0.00 43.92 4.49
2548 14861 6.619173 AGTTAGCAACTTTCGTATCGACGTG 61.619 44.000 0.00 0.00 43.92 4.49
2549 14862 4.614535 AGTTAGCAACTTTCGTATCGACGT 60.615 41.667 0.00 0.00 43.92 4.34
2550 14863 3.850273 AGTTAGCAACTTTCGTATCGACG 59.150 43.478 0.00 0.00 44.51 5.12
2562 14875 9.301153 CAATTTAGACACAAAAAGTTAGCAACT 57.699 29.630 0.00 0.00 45.46 3.16
2563 14876 8.539674 CCAATTTAGACACAAAAAGTTAGCAAC 58.460 33.333 0.00 0.00 0.00 4.17
2564 14877 8.470805 TCCAATTTAGACACAAAAAGTTAGCAA 58.529 29.630 0.00 0.00 0.00 3.91
2565 14878 8.001881 TCCAATTTAGACACAAAAAGTTAGCA 57.998 30.769 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.