Multiple sequence alignment - TraesCS3B01G485600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G485600 chr3B 100.000 5194 0 0 1 5194 732431696 732426503 0.000000e+00 9592.0
1 TraesCS3B01G485600 chr3B 96.863 542 14 3 4654 5194 662470810 662471349 0.000000e+00 904.0
2 TraesCS3B01G485600 chr3B 97.059 374 6 2 4654 5027 41354681 41354313 4.420000e-175 625.0
3 TraesCS3B01G485600 chr3B 94.152 171 10 0 5024 5194 41354172 41354002 1.430000e-65 261.0
4 TraesCS3B01G485600 chr3B 100.000 51 0 0 362 412 732431279 732431229 1.540000e-15 95.3
5 TraesCS3B01G485600 chr3B 100.000 51 0 0 418 468 732431335 732431285 1.540000e-15 95.3
6 TraesCS3B01G485600 chr3D 89.258 1564 117 28 1775 3290 551983531 551981971 0.000000e+00 1910.0
7 TraesCS3B01G485600 chr3D 88.792 1142 72 22 3287 4402 551981942 551980831 0.000000e+00 1349.0
8 TraesCS3B01G485600 chr3D 88.679 424 27 15 6 412 551985209 551984790 1.000000e-136 497.0
9 TraesCS3B01G485600 chr3D 83.964 555 37 16 418 966 551984840 551984332 7.820000e-133 484.0
10 TraesCS3B01G485600 chr3D 91.176 204 11 4 1264 1463 551984029 551983829 2.380000e-68 270.0
11 TraesCS3B01G485600 chr3D 94.118 170 10 0 4485 4654 551980835 551980666 5.160000e-65 259.0
12 TraesCS3B01G485600 chr3D 86.538 208 10 4 997 1195 551984264 551984066 4.070000e-51 213.0
13 TraesCS3B01G485600 chr3A 85.815 1135 96 36 2613 3720 688674983 688673887 0.000000e+00 1144.0
14 TraesCS3B01G485600 chr3A 90.551 508 36 6 3752 4255 688673814 688673315 0.000000e+00 662.0
15 TraesCS3B01G485600 chr3A 85.811 592 58 12 1778 2349 688675916 688675331 5.750000e-169 604.0
16 TraesCS3B01G485600 chr3A 85.340 573 44 15 997 1560 688676763 688676222 1.630000e-154 556.0
17 TraesCS3B01G485600 chr3A 82.671 554 54 18 418 966 688677357 688676841 2.210000e-123 453.0
18 TraesCS3B01G485600 chr3A 85.864 382 27 16 22 403 688677670 688677316 1.060000e-101 381.0
19 TraesCS3B01G485600 chr2B 95.749 541 15 4 4654 5194 93439312 93439844 0.000000e+00 865.0
20 TraesCS3B01G485600 chr2B 94.824 541 19 2 4654 5194 685820975 685820444 0.000000e+00 835.0
21 TraesCS3B01G485600 chr2B 84.817 191 17 3 997 1175 793499877 793499687 1.150000e-41 182.0
22 TraesCS3B01G485600 chr2B 100.000 28 0 0 917 944 9656184 9656211 9.000000e-03 52.8
23 TraesCS3B01G485600 chr6A 92.612 379 19 4 4652 5027 599824380 599824752 2.130000e-148 536.0
24 TraesCS3B01G485600 chr6A 94.118 170 10 0 5025 5194 599824866 599825035 5.160000e-65 259.0
25 TraesCS3B01G485600 chr6A 88.571 105 8 4 4389 4493 616974631 616974531 1.960000e-24 124.0
26 TraesCS3B01G485600 chr2A 93.029 373 17 3 4649 5021 759839182 759839545 2.130000e-148 536.0
27 TraesCS3B01G485600 chr2A 94.737 171 9 0 5024 5194 759839692 759839862 3.080000e-67 267.0
28 TraesCS3B01G485600 chr2A 91.262 103 6 1 4392 4494 24958955 24958856 2.520000e-28 137.0
29 TraesCS3B01G485600 chr1A 91.799 378 23 3 4654 5027 568336517 568336890 2.140000e-143 520.0
30 TraesCS3B01G485600 chr7A 91.200 375 22 3 4654 5025 117757461 117757827 2.790000e-137 499.0
31 TraesCS3B01G485600 chr7A 90.058 171 16 1 5024 5194 117757959 117758128 2.430000e-53 220.0
32 TraesCS3B01G485600 chr5A 89.867 375 23 7 4654 5024 493831894 493832257 7.880000e-128 468.0
33 TraesCS3B01G485600 chr5A 92.982 171 12 0 5024 5194 493832401 493832571 3.110000e-62 250.0
34 TraesCS3B01G485600 chr7D 94.737 171 9 0 5024 5194 634665832 634665662 3.080000e-67 267.0
35 TraesCS3B01G485600 chr7D 94.444 90 4 1 4400 4488 566094362 566094451 2.520000e-28 137.0
36 TraesCS3B01G485600 chr4A 91.667 96 5 1 4393 4488 668943860 668943952 4.220000e-26 130.0
37 TraesCS3B01G485600 chr7B 89.423 104 6 4 4389 4492 29827098 29827000 5.460000e-25 126.0
38 TraesCS3B01G485600 chr7B 87.850 107 9 3 4392 4497 495720503 495720606 7.060000e-24 122.0
39 TraesCS3B01G485600 chrUn 89.216 102 8 2 4387 4488 6054494 6054396 1.960000e-24 124.0
40 TraesCS3B01G485600 chrUn 86.325 117 9 5 4399 4514 30140735 30140625 2.540000e-23 121.0
41 TraesCS3B01G485600 chr4D 87.500 112 7 4 4400 4505 275755119 275755009 7.060000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G485600 chr3B 732426503 732431696 5193 True 3260.866667 9592 100.000000 1 5194 3 chr3B.!!$R2 5193
1 TraesCS3B01G485600 chr3B 662470810 662471349 539 False 904.000000 904 96.863000 4654 5194 1 chr3B.!!$F1 540
2 TraesCS3B01G485600 chr3B 41354002 41354681 679 True 443.000000 625 95.605500 4654 5194 2 chr3B.!!$R1 540
3 TraesCS3B01G485600 chr3D 551980666 551985209 4543 True 711.714286 1910 88.932143 6 4654 7 chr3D.!!$R1 4648
4 TraesCS3B01G485600 chr3A 688673315 688677670 4355 True 633.333333 1144 86.008667 22 4255 6 chr3A.!!$R1 4233
5 TraesCS3B01G485600 chr2B 93439312 93439844 532 False 865.000000 865 95.749000 4654 5194 1 chr2B.!!$F2 540
6 TraesCS3B01G485600 chr2B 685820444 685820975 531 True 835.000000 835 94.824000 4654 5194 1 chr2B.!!$R1 540
7 TraesCS3B01G485600 chr6A 599824380 599825035 655 False 397.500000 536 93.365000 4652 5194 2 chr6A.!!$F1 542
8 TraesCS3B01G485600 chr2A 759839182 759839862 680 False 401.500000 536 93.883000 4649 5194 2 chr2A.!!$F1 545
9 TraesCS3B01G485600 chr7A 117757461 117758128 667 False 359.500000 499 90.629000 4654 5194 2 chr7A.!!$F1 540
10 TraesCS3B01G485600 chr5A 493831894 493832571 677 False 359.000000 468 91.424500 4654 5194 2 chr5A.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 451 0.034059 AAATCCTATCTCGGCGCAGG 59.966 55.000 10.83 6.26 0.00 4.85 F
1244 1348 0.033504 ACACGACCACACCTGCTTAG 59.966 55.000 0.00 0.00 0.00 2.18 F
3060 3423 0.109132 CGCCATTTGAACCTGAAGGC 60.109 55.000 0.00 0.00 39.32 4.35 F
3292 3710 1.135333 GGTGTAGAGTAGGCTGCTGAC 59.865 57.143 10.69 8.50 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 1917 0.323360 TAAGCATCAGGTGTTGGCCC 60.323 55.0 0.00 0.0 0.00 5.80 R
3088 3451 0.037734 AGAAATCCCCCGTTGACACC 59.962 55.0 0.00 0.0 0.00 4.16 R
3956 4430 0.237498 GGTTCGTTGCAGTTACCAGC 59.763 55.0 4.95 0.0 0.00 4.85 R
4328 4802 0.250234 TGGTAGGTGTGCTCTGCATC 59.750 55.0 0.00 0.0 41.91 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.476126 TTTATTTTCCTCACCCGCGA 57.524 45.000 8.23 0.00 0.00 5.87
66 67 0.173708 AGACGATGAAGGAGTTCGGC 59.826 55.000 0.00 0.00 41.19 5.54
173 174 3.050275 GCACGCCGCCTTCTTCTT 61.050 61.111 0.00 0.00 32.94 2.52
174 175 3.028366 GCACGCCGCCTTCTTCTTC 62.028 63.158 0.00 0.00 32.94 2.87
175 176 1.374758 CACGCCGCCTTCTTCTTCT 60.375 57.895 0.00 0.00 0.00 2.85
205 212 2.498726 CCGAGAAGGAGCAGGAGC 59.501 66.667 0.00 0.00 45.00 4.70
229 236 2.117865 AGGAGAATGAGCTCAAGGAGG 58.882 52.381 22.50 0.00 36.62 4.30
239 246 1.566211 CTCAAGGAGGAGCAGGAAGA 58.434 55.000 0.00 0.00 0.00 2.87
241 248 0.540923 CAAGGAGGAGCAGGAAGAGG 59.459 60.000 0.00 0.00 0.00 3.69
242 249 0.620121 AAGGAGGAGCAGGAAGAGGG 60.620 60.000 0.00 0.00 0.00 4.30
250 257 0.618968 GCAGGAAGAGGGGAAGGAGA 60.619 60.000 0.00 0.00 0.00 3.71
252 259 2.486716 CAGGAAGAGGGGAAGGAGAAT 58.513 52.381 0.00 0.00 0.00 2.40
253 260 2.172293 CAGGAAGAGGGGAAGGAGAATG 59.828 54.545 0.00 0.00 0.00 2.67
256 263 3.379452 GAAGAGGGGAAGGAGAATGAGA 58.621 50.000 0.00 0.00 0.00 3.27
258 265 3.111484 AGAGGGGAAGGAGAATGAGAAC 58.889 50.000 0.00 0.00 0.00 3.01
259 266 1.834263 AGGGGAAGGAGAATGAGAACG 59.166 52.381 0.00 0.00 0.00 3.95
261 268 2.418884 GGGGAAGGAGAATGAGAACGAC 60.419 54.545 0.00 0.00 0.00 4.34
265 272 2.712709 AGGAGAATGAGAACGACGAGA 58.287 47.619 0.00 0.00 0.00 4.04
278 288 1.131504 CGACGAGAAGGTGAAGGAGAG 59.868 57.143 0.00 0.00 0.00 3.20
302 324 2.657459 AGGAAGAGGAGGAGAAGAAGGA 59.343 50.000 0.00 0.00 0.00 3.36
390 412 3.195698 GCCGTGGCCAAGATCGTC 61.196 66.667 21.23 0.00 34.56 4.20
391 413 2.579201 CCGTGGCCAAGATCGTCT 59.421 61.111 21.23 0.00 0.00 4.18
392 414 1.519455 CCGTGGCCAAGATCGTCTC 60.519 63.158 21.23 0.00 0.00 3.36
393 415 1.874019 CGTGGCCAAGATCGTCTCG 60.874 63.158 14.14 2.01 0.00 4.04
394 416 2.167861 GTGGCCAAGATCGTCTCGC 61.168 63.158 7.24 0.00 0.00 5.03
395 417 2.184322 GGCCAAGATCGTCTCGCA 59.816 61.111 0.00 0.00 0.00 5.10
396 418 1.880340 GGCCAAGATCGTCTCGCAG 60.880 63.158 0.00 0.00 0.00 5.18
397 419 1.153745 GCCAAGATCGTCTCGCAGT 60.154 57.895 0.00 0.00 0.00 4.40
398 420 0.737715 GCCAAGATCGTCTCGCAGTT 60.738 55.000 0.00 0.00 0.00 3.16
399 421 0.994995 CCAAGATCGTCTCGCAGTTG 59.005 55.000 0.00 0.00 0.00 3.16
400 422 0.368227 CAAGATCGTCTCGCAGTTGC 59.632 55.000 0.00 0.00 37.78 4.17
401 423 0.038251 AAGATCGTCTCGCAGTTGCA 60.038 50.000 4.84 0.00 42.21 4.08
402 424 0.457509 AGATCGTCTCGCAGTTGCAG 60.458 55.000 4.84 1.69 42.21 4.41
403 425 1.416813 GATCGTCTCGCAGTTGCAGG 61.417 60.000 4.84 0.00 42.21 4.85
404 426 3.782244 CGTCTCGCAGTTGCAGGC 61.782 66.667 4.84 2.13 42.21 4.85
405 427 3.426568 GTCTCGCAGTTGCAGGCC 61.427 66.667 0.00 0.00 42.21 5.19
406 428 4.704833 TCTCGCAGTTGCAGGCCC 62.705 66.667 0.00 0.00 42.21 5.80
408 430 4.577677 TCGCAGTTGCAGGCCCAA 62.578 61.111 0.00 0.00 42.21 4.12
409 431 3.376078 CGCAGTTGCAGGCCCAAT 61.376 61.111 0.00 0.00 42.21 3.16
410 432 2.045708 CGCAGTTGCAGGCCCAATA 61.046 57.895 0.00 0.00 42.21 1.90
411 433 1.594194 CGCAGTTGCAGGCCCAATAA 61.594 55.000 0.00 0.00 42.21 1.40
412 434 0.607620 GCAGTTGCAGGCCCAATAAA 59.392 50.000 0.00 0.00 41.59 1.40
413 435 1.207811 GCAGTTGCAGGCCCAATAAAT 59.792 47.619 0.00 0.00 41.59 1.40
414 436 2.739609 GCAGTTGCAGGCCCAATAAATC 60.740 50.000 0.00 0.00 41.59 2.17
415 437 2.110578 AGTTGCAGGCCCAATAAATCC 58.889 47.619 0.00 0.00 0.00 3.01
416 438 2.110578 GTTGCAGGCCCAATAAATCCT 58.889 47.619 0.00 0.00 0.00 3.24
417 439 3.052944 AGTTGCAGGCCCAATAAATCCTA 60.053 43.478 0.00 0.00 0.00 2.94
418 440 3.897505 GTTGCAGGCCCAATAAATCCTAT 59.102 43.478 0.00 0.00 0.00 2.57
419 441 3.766545 TGCAGGCCCAATAAATCCTATC 58.233 45.455 0.00 0.00 0.00 2.08
420 442 3.398967 TGCAGGCCCAATAAATCCTATCT 59.601 43.478 0.00 0.00 0.00 1.98
421 443 4.013050 GCAGGCCCAATAAATCCTATCTC 58.987 47.826 0.00 0.00 0.00 2.75
422 444 4.256920 CAGGCCCAATAAATCCTATCTCG 58.743 47.826 0.00 0.00 0.00 4.04
423 445 3.264450 AGGCCCAATAAATCCTATCTCGG 59.736 47.826 0.00 0.00 0.00 4.63
424 446 3.010420 GCCCAATAAATCCTATCTCGGC 58.990 50.000 0.00 0.00 0.00 5.54
425 447 3.262420 CCCAATAAATCCTATCTCGGCG 58.738 50.000 0.00 0.00 0.00 6.46
426 448 2.673368 CCAATAAATCCTATCTCGGCGC 59.327 50.000 0.00 0.00 0.00 6.53
427 449 3.325870 CAATAAATCCTATCTCGGCGCA 58.674 45.455 10.83 0.00 0.00 6.09
428 450 2.724977 TAAATCCTATCTCGGCGCAG 57.275 50.000 10.83 5.07 0.00 5.18
429 451 0.034059 AAATCCTATCTCGGCGCAGG 59.966 55.000 10.83 6.26 0.00 4.85
461 495 3.426568 GTCTCGCAGTTGCAGGCC 61.427 66.667 0.00 0.00 42.21 5.19
476 510 2.381911 CAGGCCCAATAATCAACTGCT 58.618 47.619 0.00 0.00 0.00 4.24
477 511 2.360165 CAGGCCCAATAATCAACTGCTC 59.640 50.000 0.00 0.00 0.00 4.26
478 512 1.334869 GGCCCAATAATCAACTGCTCG 59.665 52.381 0.00 0.00 0.00 5.03
479 513 2.288666 GCCCAATAATCAACTGCTCGA 58.711 47.619 0.00 0.00 0.00 4.04
485 519 5.178252 CCAATAATCAACTGCTCGATTCGAT 59.822 40.000 9.54 0.00 34.61 3.59
562 597 1.811941 GCTGCCCCATGTTCTAGTAGC 60.812 57.143 0.00 0.00 0.00 3.58
596 631 2.092592 GTGTTTCCAGTTCCCCCGATAT 60.093 50.000 0.00 0.00 0.00 1.63
640 675 1.877443 CGAAGAAAACATGGTTCCCGT 59.123 47.619 0.00 0.00 0.00 5.28
641 676 3.068560 CGAAGAAAACATGGTTCCCGTA 58.931 45.455 0.00 0.00 0.00 4.02
694 729 2.907910 AATGTGTCGCTCAGCAAATC 57.092 45.000 0.00 0.00 0.00 2.17
743 778 5.428184 AAAAACTTTGACCCAATGTTCCA 57.572 34.783 10.12 0.00 39.59 3.53
744 779 5.428184 AAAACTTTGACCCAATGTTCCAA 57.572 34.783 10.12 0.00 39.59 3.53
746 781 3.909732 ACTTTGACCCAATGTTCCAAGA 58.090 40.909 1.60 0.00 29.47 3.02
747 782 4.482990 ACTTTGACCCAATGTTCCAAGAT 58.517 39.130 1.60 0.00 29.47 2.40
748 783 5.640147 ACTTTGACCCAATGTTCCAAGATA 58.360 37.500 1.60 0.00 29.47 1.98
789 828 2.295885 GACGACGAGGAGGGATAAGAA 58.704 52.381 0.00 0.00 0.00 2.52
790 829 2.291190 GACGACGAGGAGGGATAAGAAG 59.709 54.545 0.00 0.00 0.00 2.85
798 837 2.312390 GAGGGATAAGAAGAGCTCCGT 58.688 52.381 10.93 0.00 0.00 4.69
883 923 2.505777 CGCGAGAGTGACCAGCTG 60.506 66.667 6.78 6.78 46.66 4.24
884 924 2.125753 GCGAGAGTGACCAGCTGG 60.126 66.667 31.60 31.60 42.17 4.85
905 945 2.554636 CGGTGCTTGCTTGCTTCCA 61.555 57.895 3.47 0.00 0.00 3.53
924 964 1.346068 CAGGAATCGGAATCCTCCTCC 59.654 57.143 11.72 4.30 45.59 4.30
947 989 4.171234 TCATCTTCTTCCTCCCCATATCC 58.829 47.826 0.00 0.00 0.00 2.59
985 1027 4.406173 CGACGCACGTCTCCTGCT 62.406 66.667 19.74 0.00 42.54 4.24
986 1028 2.049063 GACGCACGTCTCCTGCTT 60.049 61.111 15.56 0.00 41.57 3.91
987 1029 1.664965 GACGCACGTCTCCTGCTTT 60.665 57.895 15.56 0.00 41.57 3.51
988 1030 1.891060 GACGCACGTCTCCTGCTTTG 61.891 60.000 15.56 0.00 41.57 2.77
989 1031 2.558313 GCACGTCTCCTGCTTTGC 59.442 61.111 0.00 0.00 0.00 3.68
991 1033 1.956170 CACGTCTCCTGCTTTGCGT 60.956 57.895 0.00 0.00 0.00 5.24
992 1034 1.227556 ACGTCTCCTGCTTTGCGTT 60.228 52.632 0.00 0.00 0.00 4.84
993 1035 1.205064 CGTCTCCTGCTTTGCGTTG 59.795 57.895 0.00 0.00 0.00 4.10
994 1036 1.498865 CGTCTCCTGCTTTGCGTTGT 61.499 55.000 0.00 0.00 0.00 3.32
995 1037 0.235926 GTCTCCTGCTTTGCGTTGTC 59.764 55.000 0.00 0.00 0.00 3.18
1110 1214 2.356313 GCGGCGGATGATCACGAT 60.356 61.111 9.78 0.00 0.00 3.73
1112 1216 2.023771 CGGCGGATGATCACGATGG 61.024 63.158 9.68 0.00 0.00 3.51
1113 1217 1.069765 GGCGGATGATCACGATGGT 59.930 57.895 9.68 0.00 0.00 3.55
1197 1301 2.874780 CTCACCGTCGCTGTACGC 60.875 66.667 0.00 0.40 43.23 4.42
1198 1302 3.604494 CTCACCGTCGCTGTACGCA 62.604 63.158 9.69 0.00 43.23 5.24
1220 1324 4.062032 GGCCCCTTCCCCTTCCAC 62.062 72.222 0.00 0.00 0.00 4.02
1221 1325 3.264845 GCCCCTTCCCCTTCCACA 61.265 66.667 0.00 0.00 0.00 4.17
1222 1326 2.763902 CCCCTTCCCCTTCCACAC 59.236 66.667 0.00 0.00 0.00 3.82
1223 1327 2.763902 CCCTTCCCCTTCCACACC 59.236 66.667 0.00 0.00 0.00 4.16
1224 1328 2.160171 CCCTTCCCCTTCCACACCA 61.160 63.158 0.00 0.00 0.00 4.17
1225 1329 1.725169 CCCTTCCCCTTCCACACCAA 61.725 60.000 0.00 0.00 0.00 3.67
1226 1330 0.539669 CCTTCCCCTTCCACACCAAC 60.540 60.000 0.00 0.00 0.00 3.77
1227 1331 0.184933 CTTCCCCTTCCACACCAACA 59.815 55.000 0.00 0.00 0.00 3.33
1228 1332 0.106419 TTCCCCTTCCACACCAACAC 60.106 55.000 0.00 0.00 0.00 3.32
1229 1333 1.896660 CCCCTTCCACACCAACACG 60.897 63.158 0.00 0.00 0.00 4.49
1230 1334 1.147376 CCCTTCCACACCAACACGA 59.853 57.895 0.00 0.00 0.00 4.35
1231 1335 1.164041 CCCTTCCACACCAACACGAC 61.164 60.000 0.00 0.00 0.00 4.34
1232 1336 1.164041 CCTTCCACACCAACACGACC 61.164 60.000 0.00 0.00 0.00 4.79
1233 1337 0.462937 CTTCCACACCAACACGACCA 60.463 55.000 0.00 0.00 0.00 4.02
1234 1338 0.745128 TTCCACACCAACACGACCAC 60.745 55.000 0.00 0.00 0.00 4.16
1235 1339 1.450491 CCACACCAACACGACCACA 60.450 57.895 0.00 0.00 0.00 4.17
1244 1348 0.033504 ACACGACCACACCTGCTTAG 59.966 55.000 0.00 0.00 0.00 2.18
1250 1354 2.565834 GACCACACCTGCTTAGTTCCTA 59.434 50.000 0.00 0.00 0.00 2.94
1256 1360 2.092914 ACCTGCTTAGTTCCTATGCCAC 60.093 50.000 6.66 0.00 36.63 5.01
1257 1361 2.092968 CCTGCTTAGTTCCTATGCCACA 60.093 50.000 6.66 0.00 36.63 4.17
1258 1362 3.609853 CTGCTTAGTTCCTATGCCACAA 58.390 45.455 6.66 0.00 36.63 3.33
1259 1363 3.609853 TGCTTAGTTCCTATGCCACAAG 58.390 45.455 6.66 0.00 36.63 3.16
1287 1391 1.364626 CGTGTCTGCCTGATCCAAGC 61.365 60.000 0.00 0.00 0.00 4.01
1433 1538 1.065854 CCCTGCTTCCTCTTCATCGTT 60.066 52.381 0.00 0.00 0.00 3.85
1464 1569 0.327576 CCCCCTATCCCTCAAGGTGT 60.328 60.000 0.00 0.00 36.75 4.16
1471 1576 2.879103 TCCCTCAAGGTGTTCCATTC 57.121 50.000 0.00 0.00 36.75 2.67
1479 1584 5.551233 TCAAGGTGTTCCATTCTTACTCTG 58.449 41.667 0.00 0.00 35.89 3.35
1482 1587 5.552178 AGGTGTTCCATTCTTACTCTGAAC 58.448 41.667 0.00 0.00 35.89 3.18
1487 1592 8.254508 GTGTTCCATTCTTACTCTGAACTCTAT 58.745 37.037 0.00 0.00 34.63 1.98
1489 1594 9.308318 GTTCCATTCTTACTCTGAACTCTATTC 57.692 37.037 0.00 0.00 31.71 1.75
1490 1595 8.830915 TCCATTCTTACTCTGAACTCTATTCT 57.169 34.615 0.00 0.00 0.00 2.40
1492 1597 8.690884 CCATTCTTACTCTGAACTCTATTCTGA 58.309 37.037 0.00 0.00 0.00 3.27
1497 1602 9.868277 CTTACTCTGAACTCTATTCTGAAATGT 57.132 33.333 0.00 0.00 0.00 2.71
1501 1606 8.134202 TCTGAACTCTATTCTGAAATGTACCA 57.866 34.615 0.00 0.00 0.00 3.25
1503 1608 7.907389 TGAACTCTATTCTGAAATGTACCACT 58.093 34.615 0.00 0.00 0.00 4.00
1504 1609 8.375506 TGAACTCTATTCTGAAATGTACCACTT 58.624 33.333 0.00 0.00 0.00 3.16
1505 1610 9.220767 GAACTCTATTCTGAAATGTACCACTTT 57.779 33.333 0.00 0.00 0.00 2.66
1511 1616 6.142818 TCTGAAATGTACCACTTTTGTTGG 57.857 37.500 0.00 0.00 0.00 3.77
1517 1622 3.697045 TGTACCACTTTTGTTGGTTCAGG 59.303 43.478 0.00 0.00 36.07 3.86
1524 1629 1.412079 TTGTTGGTTCAGGCTGCAAT 58.588 45.000 10.34 0.00 0.00 3.56
1528 1633 0.895100 TGGTTCAGGCTGCAATGACC 60.895 55.000 10.34 12.27 0.00 4.02
1539 1644 3.921677 CTGCAATGACCAGCTGAATTTT 58.078 40.909 17.39 0.43 32.24 1.82
1542 1647 4.202233 TGCAATGACCAGCTGAATTTTCAA 60.202 37.500 17.39 0.00 36.64 2.69
1543 1648 4.387862 GCAATGACCAGCTGAATTTTCAAG 59.612 41.667 17.39 7.70 36.64 3.02
1548 1653 4.948847 ACCAGCTGAATTTTCAAGTTTCC 58.051 39.130 17.39 0.00 36.64 3.13
1554 1659 5.684813 GCTGAATTTTCAAGTTTCCCCTTGT 60.685 40.000 0.00 0.00 42.01 3.16
1557 1662 4.904253 TTTTCAAGTTTCCCCTTGTACG 57.096 40.909 0.00 0.00 42.01 3.67
1560 1665 4.895668 TCAAGTTTCCCCTTGTACGTAT 57.104 40.909 0.00 0.00 42.01 3.06
1561 1666 5.999205 TCAAGTTTCCCCTTGTACGTATA 57.001 39.130 0.00 0.00 42.01 1.47
1563 1668 7.658525 TCAAGTTTCCCCTTGTACGTATATA 57.341 36.000 0.00 0.00 42.01 0.86
1565 1670 7.342799 TCAAGTTTCCCCTTGTACGTATATACT 59.657 37.037 11.05 1.45 42.01 2.12
1566 1671 7.282332 AGTTTCCCCTTGTACGTATATACTC 57.718 40.000 11.05 2.74 0.00 2.59
1567 1672 7.065504 AGTTTCCCCTTGTACGTATATACTCT 58.934 38.462 11.05 0.00 0.00 3.24
1568 1673 8.220559 AGTTTCCCCTTGTACGTATATACTCTA 58.779 37.037 11.05 0.00 0.00 2.43
1570 1675 7.321717 TCCCCTTGTACGTATATACTCTACT 57.678 40.000 11.05 0.00 0.00 2.57
1571 1676 8.435931 TCCCCTTGTACGTATATACTCTACTA 57.564 38.462 11.05 6.48 0.00 1.82
1572 1677 8.535335 TCCCCTTGTACGTATATACTCTACTAG 58.465 40.741 11.05 13.54 0.00 2.57
1585 1690 5.627182 ACTCTACTAGATAGGTTCGTCCA 57.373 43.478 0.00 0.00 39.02 4.02
1601 1738 3.056213 CCAACCATTGGCTGTTCCT 57.944 52.632 1.54 0.00 45.17 3.36
1609 1746 3.334691 CATTGGCTGTTCCTAACTTCGA 58.665 45.455 0.00 0.00 35.26 3.71
1610 1747 3.478857 TTGGCTGTTCCTAACTTCGAA 57.521 42.857 0.00 0.00 35.26 3.71
1614 1751 3.374367 GGCTGTTCCTAACTTCGAATTCC 59.626 47.826 0.00 0.00 0.00 3.01
1617 1762 5.123979 GCTGTTCCTAACTTCGAATTCCAAT 59.876 40.000 0.00 0.00 0.00 3.16
1623 1768 5.963586 CCTAACTTCGAATTCCAATAAACGC 59.036 40.000 0.00 0.00 0.00 4.84
1630 1775 1.083489 TTCCAATAAACGCGCAGAGG 58.917 50.000 5.73 0.57 0.00 3.69
1633 1778 1.261619 CCAATAAACGCGCAGAGGATC 59.738 52.381 5.73 0.00 0.00 3.36
1639 1784 2.107953 GCGCAGAGGATCCCAGAC 59.892 66.667 8.55 0.00 33.66 3.51
1643 1788 2.060383 CAGAGGATCCCAGACCGCA 61.060 63.158 8.55 0.00 33.66 5.69
1663 1808 1.528542 CCGGGCGATCAGGAGAGTA 60.529 63.158 0.00 0.00 32.04 2.59
1687 1832 4.453819 GTCATAAGAACACTGAAGCTGCTT 59.546 41.667 15.92 15.92 0.00 3.91
1712 1857 0.255890 GGGGATCTTGCTGCAAGGTA 59.744 55.000 34.49 21.29 41.33 3.08
1713 1858 1.133668 GGGGATCTTGCTGCAAGGTAT 60.134 52.381 34.49 24.49 41.33 2.73
1716 1861 2.877168 GGATCTTGCTGCAAGGTATCTG 59.123 50.000 34.49 14.50 41.33 2.90
1719 1864 3.801698 TCTTGCTGCAAGGTATCTGATC 58.198 45.455 34.49 0.00 41.33 2.92
1722 1871 3.736720 TGCTGCAAGGTATCTGATCATC 58.263 45.455 0.00 0.00 0.00 2.92
1745 1911 4.717279 ACACCCCAGTTAGCTTCTTAAA 57.283 40.909 0.00 0.00 0.00 1.52
1749 1916 5.710099 CACCCCAGTTAGCTTCTTAAATTCA 59.290 40.000 0.00 0.00 0.00 2.57
1750 1917 5.946377 ACCCCAGTTAGCTTCTTAAATTCAG 59.054 40.000 0.00 0.00 0.00 3.02
1751 1918 5.358160 CCCCAGTTAGCTTCTTAAATTCAGG 59.642 44.000 0.00 0.00 0.00 3.86
1753 1920 5.163612 CCAGTTAGCTTCTTAAATTCAGGGC 60.164 44.000 0.00 0.00 0.00 5.19
1754 1921 4.950475 AGTTAGCTTCTTAAATTCAGGGCC 59.050 41.667 0.00 0.00 0.00 5.80
1756 1923 3.778265 AGCTTCTTAAATTCAGGGCCAA 58.222 40.909 6.18 0.00 0.00 4.52
1758 1925 3.258123 GCTTCTTAAATTCAGGGCCAACA 59.742 43.478 6.18 0.00 0.00 3.33
1759 1926 4.809673 CTTCTTAAATTCAGGGCCAACAC 58.190 43.478 6.18 0.00 0.00 3.32
1760 1927 3.161866 TCTTAAATTCAGGGCCAACACC 58.838 45.455 6.18 0.00 0.00 4.16
1761 1928 2.990740 TAAATTCAGGGCCAACACCT 57.009 45.000 6.18 0.00 39.43 4.00
1768 1987 1.607467 GGGCCAACACCTGATGCTT 60.607 57.895 4.39 0.00 0.00 3.91
1771 1990 1.892474 GGCCAACACCTGATGCTTAAA 59.108 47.619 0.00 0.00 0.00 1.52
1774 1993 4.176271 GCCAACACCTGATGCTTAAATTC 58.824 43.478 0.00 0.00 0.00 2.17
1776 1995 4.381932 CCAACACCTGATGCTTAAATTCCC 60.382 45.833 0.00 0.00 0.00 3.97
1781 2000 4.017130 ACCTGATGCTTAAATTCCCCTCTT 60.017 41.667 0.00 0.00 0.00 2.85
1790 2009 6.575056 GCTTAAATTCCCCTCTTTGCAAAGAT 60.575 38.462 35.40 22.81 43.52 2.40
1792 2011 2.220653 TCCCCTCTTTGCAAAGATGG 57.779 50.000 37.35 37.35 45.13 3.51
1803 2022 7.950512 TCTTTGCAAAGATGGAATTCTAACAA 58.049 30.769 32.86 9.51 39.95 2.83
1804 2023 8.084073 TCTTTGCAAAGATGGAATTCTAACAAG 58.916 33.333 32.86 6.76 39.95 3.16
1806 2025 7.288810 TGCAAAGATGGAATTCTAACAAGTT 57.711 32.000 5.23 0.00 0.00 2.66
1807 2026 7.147312 TGCAAAGATGGAATTCTAACAAGTTG 58.853 34.615 5.23 0.00 0.00 3.16
1808 2027 7.014134 TGCAAAGATGGAATTCTAACAAGTTGA 59.986 33.333 10.54 0.00 0.00 3.18
1815 2034 7.648142 TGGAATTCTAACAAGTTGACAATGTC 58.352 34.615 10.54 6.41 0.00 3.06
1857 2082 1.487976 TCCCATGCTCCAGATGAACTC 59.512 52.381 0.00 0.00 0.00 3.01
1866 2091 3.708631 CTCCAGATGAACTCACCTATGGT 59.291 47.826 0.00 0.00 35.62 3.55
1910 2135 1.407979 GTGTGGTATCCTCCAGGTACG 59.592 57.143 0.00 0.00 38.23 3.67
1912 2137 2.291735 TGTGGTATCCTCCAGGTACGAA 60.292 50.000 0.00 0.00 38.23 3.85
1931 2156 5.103687 ACGAAACCACGCAAAATTTACTTT 58.896 33.333 0.00 0.00 36.70 2.66
1932 2157 6.264088 ACGAAACCACGCAAAATTTACTTTA 58.736 32.000 0.00 0.00 36.70 1.85
1933 2158 6.196910 ACGAAACCACGCAAAATTTACTTTAC 59.803 34.615 0.00 0.00 36.70 2.01
1934 2159 6.196724 CGAAACCACGCAAAATTTACTTTACA 59.803 34.615 0.00 0.00 0.00 2.41
1960 2187 5.351233 TTGAAAAGAACGAATGCATACGT 57.649 34.783 0.00 0.00 44.57 3.57
1964 2191 2.540515 AGAACGAATGCATACGTCAGG 58.459 47.619 0.00 0.00 41.87 3.86
1977 2204 5.416083 CATACGTCAGGGAGTGATTTTGTA 58.584 41.667 0.00 0.00 37.56 2.41
2014 2244 2.959967 TGCCCTTGCATACTTGGTG 58.040 52.632 0.00 0.00 44.23 4.17
2017 2247 1.923356 CCCTTGCATACTTGGTGGTT 58.077 50.000 0.00 0.00 0.00 3.67
2023 2253 1.613437 GCATACTTGGTGGTTGCAGTT 59.387 47.619 0.00 0.00 33.58 3.16
2026 2256 4.675146 GCATACTTGGTGGTTGCAGTTATG 60.675 45.833 0.00 0.00 33.58 1.90
2035 2265 2.279741 GTTGCAGTTATGGAGATCGCA 58.720 47.619 0.00 0.00 0.00 5.10
2038 2268 2.279741 GCAGTTATGGAGATCGCAACA 58.720 47.619 0.00 0.00 0.00 3.33
2084 2314 3.745458 GTCAAGTTCAGGCTTCTTCTCAG 59.255 47.826 0.00 0.00 0.00 3.35
2116 2346 5.473504 GCTGTACCTTTCCCAATGGTATATG 59.526 44.000 0.00 0.00 41.49 1.78
2117 2347 5.381757 TGTACCTTTCCCAATGGTATATGC 58.618 41.667 0.00 0.00 41.49 3.14
2118 2348 4.814224 ACCTTTCCCAATGGTATATGCT 57.186 40.909 0.00 0.00 37.18 3.79
2119 2349 5.142806 ACCTTTCCCAATGGTATATGCTT 57.857 39.130 0.00 0.00 37.18 3.91
2120 2350 5.528337 ACCTTTCCCAATGGTATATGCTTT 58.472 37.500 0.00 0.00 37.18 3.51
2140 2389 7.211573 TGCTTTTTGATGTCATCTGAATTGTT 58.788 30.769 13.90 0.00 0.00 2.83
2142 2391 8.857216 GCTTTTTGATGTCATCTGAATTGTTAG 58.143 33.333 13.90 4.45 0.00 2.34
2164 2413 4.097437 AGGCATTGCAGATTTCACATACTG 59.903 41.667 11.39 0.00 0.00 2.74
2173 2422 5.356190 CAGATTTCACATACTGATTGTGGCT 59.644 40.000 12.35 5.41 43.67 4.75
2179 2428 4.456911 CACATACTGATTGTGGCTTCTGTT 59.543 41.667 6.78 0.00 40.60 3.16
2211 2460 2.617250 TTGTCGCATGTTGCATTCTC 57.383 45.000 0.00 0.00 45.36 2.87
2331 2580 3.364460 TGAGACTTCTCTAGCTCTGCT 57.636 47.619 7.74 0.00 43.25 4.24
2347 2602 7.282332 AGCTCTGCTCATTTTACTTTCTTTT 57.718 32.000 0.00 0.00 30.62 2.27
2349 2604 7.650903 AGCTCTGCTCATTTTACTTTCTTTTTG 59.349 33.333 0.00 0.00 30.62 2.44
2401 2656 7.256286 ACTACTCGTTTGAGCGTAGAATTAAT 58.744 34.615 0.00 0.00 46.69 1.40
2611 2964 5.990668 ACTCAGTTCTTTGTACTTCAGGTT 58.009 37.500 0.00 0.00 0.00 3.50
2665 3019 9.987272 CAGAGTCCAATATACAAATCATACTCA 57.013 33.333 0.00 0.00 33.70 3.41
2728 3085 8.911247 ACAATCAAAGTAGTTTTGTGAAAGTC 57.089 30.769 0.00 0.00 45.17 3.01
2752 3109 6.019075 TCGAAACTCATTTACAGTGTTGTCTG 60.019 38.462 0.00 0.00 38.76 3.51
2757 3114 8.902540 ACTCATTTACAGTGTTGTCTGATTTA 57.097 30.769 0.00 0.00 38.76 1.40
2922 3281 8.506437 TCAGATAACAAAACATTCATGTCTGTC 58.494 33.333 7.66 0.00 40.80 3.51
2937 3296 5.689383 TGTCTGTCCTTTGCAGTTATTTC 57.311 39.130 0.00 0.00 35.60 2.17
2965 3324 0.393267 TACCCGCCAACTTATGCACC 60.393 55.000 0.00 0.00 0.00 5.01
3000 3363 3.055094 ACTGTACTGATGATTCCCCACAC 60.055 47.826 6.77 0.00 0.00 3.82
3060 3423 0.109132 CGCCATTTGAACCTGAAGGC 60.109 55.000 0.00 0.00 39.32 4.35
3087 3450 9.759473 TTACTAAGGTAAGGTAGTATTCTGTGT 57.241 33.333 0.00 0.00 33.83 3.72
3088 3451 8.064336 ACTAAGGTAAGGTAGTATTCTGTGTG 57.936 38.462 0.00 0.00 0.00 3.82
3089 3452 5.934402 AGGTAAGGTAGTATTCTGTGTGG 57.066 43.478 0.00 0.00 0.00 4.17
3090 3453 5.339477 AGGTAAGGTAGTATTCTGTGTGGT 58.661 41.667 0.00 0.00 0.00 4.16
3091 3454 5.187186 AGGTAAGGTAGTATTCTGTGTGGTG 59.813 44.000 0.00 0.00 0.00 4.17
3092 3455 5.046807 GGTAAGGTAGTATTCTGTGTGGTGT 60.047 44.000 0.00 0.00 0.00 4.16
3093 3456 4.803098 AGGTAGTATTCTGTGTGGTGTC 57.197 45.455 0.00 0.00 0.00 3.67
3094 3457 4.157246 AGGTAGTATTCTGTGTGGTGTCA 58.843 43.478 0.00 0.00 0.00 3.58
3095 3458 4.591498 AGGTAGTATTCTGTGTGGTGTCAA 59.409 41.667 0.00 0.00 0.00 3.18
3098 3465 1.593196 ATTCTGTGTGGTGTCAACGG 58.407 50.000 0.00 0.00 0.00 4.44
3115 3482 2.126882 ACGGGGGATTTCTGATCATCA 58.873 47.619 0.00 0.00 0.00 3.07
3161 3545 3.758300 GTGTTGACACTGTTCCTTGTTG 58.242 45.455 7.01 0.00 43.25 3.33
3162 3546 2.163412 TGTTGACACTGTTCCTTGTTGC 59.837 45.455 0.00 0.00 0.00 4.17
3246 3632 7.599998 GTGCTTGTTCATATGAAGGTGATTTTT 59.400 33.333 18.47 0.00 34.27 1.94
3292 3710 1.135333 GGTGTAGAGTAGGCTGCTGAC 59.865 57.143 10.69 8.50 0.00 3.51
3416 3838 4.499183 CACTTCTCTCATGGTAACCAGAC 58.501 47.826 0.00 0.00 36.75 3.51
3421 3843 5.519808 TCTCTCATGGTAACCAGACTACAT 58.480 41.667 0.00 0.00 36.75 2.29
3436 3867 7.039293 ACCAGACTACATAGTACACATTCAACA 60.039 37.037 0.00 0.00 36.50 3.33
3477 3908 2.196595 CATGTTTCCACTCCTCCCCTA 58.803 52.381 0.00 0.00 0.00 3.53
3484 3915 2.043227 CCACTCCTCCCCTATCTGAAC 58.957 57.143 0.00 0.00 0.00 3.18
3510 3941 5.743398 CGATTCAACAAAGTTTGCTCTTTCA 59.257 36.000 15.59 0.00 35.77 2.69
3517 3948 6.397272 ACAAAGTTTGCTCTTTCACATTTCA 58.603 32.000 15.59 0.00 35.77 2.69
3518 3949 6.311200 ACAAAGTTTGCTCTTTCACATTTCAC 59.689 34.615 15.59 0.00 35.77 3.18
3552 3983 2.863740 TCTGAACAAACAGCTGTACACG 59.136 45.455 22.01 11.24 37.75 4.49
3621 4052 4.700213 TCCATGCTTTACTTCCTTGTAAGC 59.300 41.667 0.00 0.00 34.43 3.09
3624 4055 3.073946 TGCTTTACTTCCTTGTAAGCCCT 59.926 43.478 0.00 0.00 34.43 5.19
3645 4076 7.724061 AGCCCTTCTCAATTTTACAAAACTAGA 59.276 33.333 0.00 0.00 0.00 2.43
3683 4120 7.524294 AATTAATGAACAATTGAACATCGGC 57.476 32.000 13.59 0.00 0.00 5.54
3691 4128 4.984161 ACAATTGAACATCGGCAGAAAAAG 59.016 37.500 13.59 0.00 0.00 2.27
3696 4133 5.655488 TGAACATCGGCAGAAAAAGAAAAA 58.345 33.333 0.00 0.00 0.00 1.94
3728 4190 6.645790 ATTCAAAATCCTCCATATGACAGC 57.354 37.500 3.65 0.00 0.00 4.40
3730 4192 4.166725 TCAAAATCCTCCATATGACAGCCT 59.833 41.667 3.65 0.00 0.00 4.58
3731 4193 3.784511 AATCCTCCATATGACAGCCTG 57.215 47.619 3.65 0.00 0.00 4.85
3732 4194 2.477104 TCCTCCATATGACAGCCTGA 57.523 50.000 3.65 0.00 0.00 3.86
3733 4195 2.042464 TCCTCCATATGACAGCCTGAC 58.958 52.381 3.65 0.00 0.00 3.51
3735 4197 2.371179 CCTCCATATGACAGCCTGACAT 59.629 50.000 13.85 13.85 36.74 3.06
3736 4198 3.556633 CCTCCATATGACAGCCTGACATC 60.557 52.174 12.82 0.00 34.78 3.06
3738 4200 2.371179 CCATATGACAGCCTGACATCCT 59.629 50.000 12.82 0.28 34.78 3.24
3739 4201 3.400255 CATATGACAGCCTGACATCCTG 58.600 50.000 12.82 8.63 34.78 3.86
3740 4202 1.576577 ATGACAGCCTGACATCCTGA 58.423 50.000 3.78 0.00 26.95 3.86
3741 4203 1.351076 TGACAGCCTGACATCCTGAA 58.649 50.000 0.00 0.00 0.00 3.02
3743 4205 3.106827 TGACAGCCTGACATCCTGAATA 58.893 45.455 0.00 0.00 0.00 1.75
3744 4206 3.713248 TGACAGCCTGACATCCTGAATAT 59.287 43.478 0.00 0.00 0.00 1.28
3745 4207 4.164796 TGACAGCCTGACATCCTGAATATT 59.835 41.667 0.00 0.00 0.00 1.28
3746 4208 4.712476 ACAGCCTGACATCCTGAATATTC 58.288 43.478 8.60 8.60 0.00 1.75
3747 4209 4.164796 ACAGCCTGACATCCTGAATATTCA 59.835 41.667 17.07 17.07 35.57 2.57
3797 4271 2.655577 CGTCGACGACAACATTGTTGAC 60.656 50.000 33.35 24.25 46.84 3.18
3818 4292 3.256960 TGGTGGCTTCCCCAGGTC 61.257 66.667 0.00 0.00 46.54 3.85
3836 4310 4.702081 GACGTCGTGAGCCTGCGT 62.702 66.667 0.63 0.00 38.55 5.24
3917 4391 4.162690 GCCGGCATCTTCGAGGGT 62.163 66.667 24.80 0.00 0.00 4.34
3956 4430 2.591311 CGACGGGACCAACAACACG 61.591 63.158 0.00 0.00 0.00 4.49
3977 4451 1.531149 CTGGTAACTGCAACGAACCTG 59.469 52.381 8.22 4.81 37.61 4.00
4024 4498 2.847901 CTTCAGCGCATGTTGAGAAAG 58.152 47.619 11.47 0.00 36.64 2.62
4025 4499 2.168326 TCAGCGCATGTTGAGAAAGA 57.832 45.000 11.47 0.00 31.18 2.52
4026 4500 2.071540 TCAGCGCATGTTGAGAAAGAG 58.928 47.619 11.47 0.00 31.18 2.85
4027 4501 2.071540 CAGCGCATGTTGAGAAAGAGA 58.928 47.619 11.47 0.00 0.00 3.10
4028 4502 2.481568 CAGCGCATGTTGAGAAAGAGAA 59.518 45.455 11.47 0.00 0.00 2.87
4029 4503 3.058708 CAGCGCATGTTGAGAAAGAGAAA 60.059 43.478 11.47 0.00 0.00 2.52
4190 4664 1.517832 CGGGGTCTACTGGAAGCTG 59.482 63.158 0.00 0.00 37.60 4.24
4204 4678 2.579201 GCTGTAGCGAGCCAGGAA 59.421 61.111 0.00 0.00 32.35 3.36
4256 4730 6.017440 TGTGTTGGAACTTAGAATTGTGTAGC 60.017 38.462 0.00 0.00 0.00 3.58
4259 4733 6.985188 TGGAACTTAGAATTGTGTAGCATC 57.015 37.500 0.00 0.00 0.00 3.91
4262 4736 6.428385 AACTTAGAATTGTGTAGCATCTGC 57.572 37.500 0.00 0.00 42.49 4.26
4315 4789 1.001641 GGCTCACTGACTGCCCATT 60.002 57.895 0.00 0.00 40.71 3.16
4329 4803 3.384816 CCATTATGTGGCGAGCAGA 57.615 52.632 0.00 0.00 42.12 4.26
4330 4804 1.888215 CCATTATGTGGCGAGCAGAT 58.112 50.000 0.00 0.00 42.12 2.90
4331 4805 1.534163 CCATTATGTGGCGAGCAGATG 59.466 52.381 0.00 0.00 42.12 2.90
4332 4806 1.069432 CATTATGTGGCGAGCAGATGC 60.069 52.381 0.00 0.00 42.49 3.91
4349 4823 1.743252 GCAGAGCACACCTACCAGC 60.743 63.158 0.00 0.00 0.00 4.85
4372 4846 3.432890 GGGAGTGGGAGATCAAAGTCATC 60.433 52.174 0.00 0.00 0.00 2.92
4397 4872 5.505780 ACTGCCCATTACTTGCTATAACAA 58.494 37.500 0.00 0.00 0.00 2.83
4408 4883 5.602628 CTTGCTATAACAAGTACTCCCTCC 58.397 45.833 7.58 0.00 41.74 4.30
4409 4884 3.635373 TGCTATAACAAGTACTCCCTCCG 59.365 47.826 0.00 0.00 0.00 4.63
4410 4885 3.635836 GCTATAACAAGTACTCCCTCCGT 59.364 47.826 0.00 0.00 0.00 4.69
4411 4886 4.099113 GCTATAACAAGTACTCCCTCCGTT 59.901 45.833 0.00 0.00 0.00 4.44
4412 4887 5.394993 GCTATAACAAGTACTCCCTCCGTTT 60.395 44.000 0.00 0.00 0.00 3.60
4413 4888 3.397849 AACAAGTACTCCCTCCGTTTC 57.602 47.619 0.00 0.00 0.00 2.78
4414 4889 2.322658 ACAAGTACTCCCTCCGTTTCA 58.677 47.619 0.00 0.00 0.00 2.69
4415 4890 2.701951 ACAAGTACTCCCTCCGTTTCAA 59.298 45.455 0.00 0.00 0.00 2.69
4416 4891 3.135167 ACAAGTACTCCCTCCGTTTCAAA 59.865 43.478 0.00 0.00 0.00 2.69
4417 4892 4.131596 CAAGTACTCCCTCCGTTTCAAAA 58.868 43.478 0.00 0.00 0.00 2.44
4418 4893 4.635699 AGTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
4419 4894 5.750352 AGTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
4420 4895 5.731591 AGTACTCCCTCCGTTTCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
4421 4896 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
4422 4897 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
4423 4898 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
4424 4899 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
4425 4900 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
4426 4901 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
4427 4902 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
4428 4903 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
4429 4904 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
4430 4905 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
4431 4906 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
4432 4907 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
4433 4908 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
4434 4909 7.114811 CGTTTCAAAATAGATGACCCAACTTTG 59.885 37.037 0.00 0.00 0.00 2.77
4435 4910 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
4436 4911 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
4437 4912 8.106247 TCAAAATAGATGACCCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
4438 4913 7.942341 TCAAAATAGATGACCCAACTTTGTACT 59.058 33.333 0.00 0.00 0.00 2.73
4439 4914 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
4440 4915 8.788325 AAATAGATGACCCAACTTTGTACTAC 57.212 34.615 0.00 0.00 0.00 2.73
4441 4916 7.735326 ATAGATGACCCAACTTTGTACTACT 57.265 36.000 0.00 0.00 0.00 2.57
4442 4917 8.834004 ATAGATGACCCAACTTTGTACTACTA 57.166 34.615 0.00 0.00 0.00 1.82
4443 4918 7.549147 AGATGACCCAACTTTGTACTACTAA 57.451 36.000 0.00 0.00 0.00 2.24
4444 4919 7.970102 AGATGACCCAACTTTGTACTACTAAA 58.030 34.615 0.00 0.00 0.00 1.85
4445 4920 8.095169 AGATGACCCAACTTTGTACTACTAAAG 58.905 37.037 0.00 0.00 39.26 1.85
4446 4921 5.993441 TGACCCAACTTTGTACTACTAAAGC 59.007 40.000 3.91 0.00 37.40 3.51
4447 4922 6.183361 TGACCCAACTTTGTACTACTAAAGCT 60.183 38.462 3.91 0.00 37.40 3.74
4448 4923 7.015487 TGACCCAACTTTGTACTACTAAAGCTA 59.985 37.037 3.91 0.00 37.40 3.32
4449 4924 7.384477 ACCCAACTTTGTACTACTAAAGCTAG 58.616 38.462 3.91 0.00 37.40 3.42
4450 4925 7.015974 ACCCAACTTTGTACTACTAAAGCTAGT 59.984 37.037 3.91 0.00 41.43 2.57
4451 4926 8.526147 CCCAACTTTGTACTACTAAAGCTAGTA 58.474 37.037 3.91 0.00 39.23 1.82
4452 4927 9.351570 CCAACTTTGTACTACTAAAGCTAGTAC 57.648 37.037 14.31 14.31 43.62 2.73
4460 4935 9.351570 GTACTACTAAAGCTAGTACAAAGTTGG 57.648 37.037 15.71 0.00 43.15 3.77
4461 4936 7.384477 ACTACTAAAGCTAGTACAAAGTTGGG 58.616 38.462 0.00 0.00 39.23 4.12
4462 4937 6.183810 ACTAAAGCTAGTACAAAGTTGGGT 57.816 37.500 0.00 0.00 36.56 4.51
4463 4938 6.228995 ACTAAAGCTAGTACAAAGTTGGGTC 58.771 40.000 0.00 0.00 36.56 4.46
4464 4939 4.699925 AAGCTAGTACAAAGTTGGGTCA 57.300 40.909 0.00 0.00 0.00 4.02
4465 4940 4.910458 AGCTAGTACAAAGTTGGGTCAT 57.090 40.909 0.00 0.00 0.00 3.06
4466 4941 5.242795 AGCTAGTACAAAGTTGGGTCATT 57.757 39.130 0.00 0.00 0.00 2.57
4467 4942 5.631119 AGCTAGTACAAAGTTGGGTCATTT 58.369 37.500 0.00 0.00 0.00 2.32
4468 4943 6.775708 AGCTAGTACAAAGTTGGGTCATTTA 58.224 36.000 0.00 0.00 0.00 1.40
4469 4944 7.402862 AGCTAGTACAAAGTTGGGTCATTTAT 58.597 34.615 0.00 0.00 0.00 1.40
4470 4945 7.888546 AGCTAGTACAAAGTTGGGTCATTTATT 59.111 33.333 0.00 0.00 0.00 1.40
4471 4946 8.520351 GCTAGTACAAAGTTGGGTCATTTATTT 58.480 33.333 0.00 0.00 0.00 1.40
4500 4975 4.276678 CGGAGGGAGTACGTACATTTCATA 59.723 45.833 26.55 0.00 0.00 2.15
4522 4997 9.226606 TCATAGAAAATGATAAGTTGTCGGTTT 57.773 29.630 0.00 0.00 0.00 3.27
4556 5031 1.215382 GGGCGCAAAAGGATTCCAC 59.785 57.895 10.83 0.00 0.00 4.02
4562 5037 2.428171 CGCAAAAGGATTCCACCATGAT 59.572 45.455 5.29 0.00 0.00 2.45
4567 5042 1.779092 AGGATTCCACCATGATCCCAG 59.221 52.381 5.29 0.00 32.00 4.45
4580 5055 4.479993 CCCAGGCAGAAGCGGGAG 62.480 72.222 0.00 0.00 42.25 4.30
4635 5110 4.649674 GGTGAGATGTATGGTGAAGAGGTA 59.350 45.833 0.00 0.00 0.00 3.08
4638 5113 6.758886 GTGAGATGTATGGTGAAGAGGTAAAG 59.241 42.308 0.00 0.00 0.00 1.85
4770 5245 7.148820 CCGTAATCTTTTTGCAAATAACACTGG 60.149 37.037 13.65 5.91 0.00 4.00
4900 5375 1.673665 CTCTTGTGTGGAGCCCTGC 60.674 63.158 0.00 0.00 0.00 4.85
4969 5458 2.362397 CCTTATCTTCACCAGCTCGCTA 59.638 50.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.035598 TGATTCGCGGGTGAGGAAAA 59.964 50.000 6.13 0.00 0.00 2.29
7 8 0.461870 CATGATTCGCGGGTGAGGAA 60.462 55.000 6.13 0.00 0.00 3.36
8 9 1.143838 CATGATTCGCGGGTGAGGA 59.856 57.895 6.13 0.00 0.00 3.71
10 11 0.740868 ACACATGATTCGCGGGTGAG 60.741 55.000 6.13 0.00 33.82 3.51
11 12 1.018752 CACACATGATTCGCGGGTGA 61.019 55.000 6.13 0.00 33.82 4.02
12 13 1.018752 TCACACATGATTCGCGGGTG 61.019 55.000 6.13 8.21 35.66 4.61
13 14 0.321210 TTCACACATGATTCGCGGGT 60.321 50.000 6.13 0.00 33.85 5.28
14 15 1.016627 ATTCACACATGATTCGCGGG 58.983 50.000 6.13 0.00 33.85 6.13
15 16 2.443387 CAATTCACACATGATTCGCGG 58.557 47.619 6.13 0.00 33.85 6.46
16 17 2.443387 CCAATTCACACATGATTCGCG 58.557 47.619 0.00 0.00 33.85 5.87
17 18 2.187707 GCCAATTCACACATGATTCGC 58.812 47.619 0.00 0.00 33.85 4.70
18 19 3.431856 CTGCCAATTCACACATGATTCG 58.568 45.455 0.00 0.00 33.85 3.34
19 20 3.444742 TCCTGCCAATTCACACATGATTC 59.555 43.478 0.00 0.00 33.85 2.52
20 21 3.194116 GTCCTGCCAATTCACACATGATT 59.806 43.478 0.00 0.00 33.85 2.57
90 91 2.029844 GTCGTTCAGCAGCTCCACC 61.030 63.158 0.00 0.00 0.00 4.61
92 93 2.343758 GGTCGTTCAGCAGCTCCA 59.656 61.111 0.00 0.00 0.00 3.86
173 174 4.082523 CGGCGGCCTCCTTGAAGA 62.083 66.667 18.34 0.00 0.00 2.87
174 175 4.082523 TCGGCGGCCTCCTTGAAG 62.083 66.667 18.34 0.00 0.00 3.02
175 176 4.082523 CTCGGCGGCCTCCTTGAA 62.083 66.667 18.34 0.00 0.00 2.69
205 212 3.197333 TCCTTGAGCTCATTCTCCTTCTG 59.803 47.826 19.04 0.00 32.22 3.02
229 236 0.618968 TCCTTCCCCTCTTCCTGCTC 60.619 60.000 0.00 0.00 0.00 4.26
232 239 1.958288 TTCTCCTTCCCCTCTTCCTG 58.042 55.000 0.00 0.00 0.00 3.86
237 244 3.111484 GTTCTCATTCTCCTTCCCCTCT 58.889 50.000 0.00 0.00 0.00 3.69
239 246 1.834263 CGTTCTCATTCTCCTTCCCCT 59.166 52.381 0.00 0.00 0.00 4.79
241 248 2.735762 CGTCGTTCTCATTCTCCTTCCC 60.736 54.545 0.00 0.00 0.00 3.97
242 249 2.163815 TCGTCGTTCTCATTCTCCTTCC 59.836 50.000 0.00 0.00 0.00 3.46
250 257 2.557056 TCACCTTCTCGTCGTTCTCATT 59.443 45.455 0.00 0.00 0.00 2.57
252 259 1.601166 TCACCTTCTCGTCGTTCTCA 58.399 50.000 0.00 0.00 0.00 3.27
253 260 2.586900 CTTCACCTTCTCGTCGTTCTC 58.413 52.381 0.00 0.00 0.00 2.87
256 263 1.269998 CTCCTTCACCTTCTCGTCGTT 59.730 52.381 0.00 0.00 0.00 3.85
258 265 1.131504 CTCTCCTTCACCTTCTCGTCG 59.868 57.143 0.00 0.00 0.00 5.12
259 266 2.094957 CACTCTCCTTCACCTTCTCGTC 60.095 54.545 0.00 0.00 0.00 4.20
261 268 2.163412 CTCACTCTCCTTCACCTTCTCG 59.837 54.545 0.00 0.00 0.00 4.04
265 272 2.704190 TCCTCACTCTCCTTCACCTT 57.296 50.000 0.00 0.00 0.00 3.50
278 288 3.094484 TCTTCTCCTCCTCTTCCTCAC 57.906 52.381 0.00 0.00 0.00 3.51
324 346 3.699894 CACAGGCTCTCCCACGCT 61.700 66.667 0.00 0.00 35.39 5.07
378 400 1.880340 CTGCGAGACGATCTTGGCC 60.880 63.158 0.00 0.00 0.00 5.36
379 401 0.737715 AACTGCGAGACGATCTTGGC 60.738 55.000 0.00 0.00 0.00 4.52
380 402 0.994995 CAACTGCGAGACGATCTTGG 59.005 55.000 0.00 0.00 0.00 3.61
381 403 0.368227 GCAACTGCGAGACGATCTTG 59.632 55.000 0.00 0.00 0.00 3.02
382 404 0.038251 TGCAACTGCGAGACGATCTT 60.038 50.000 0.00 0.00 45.83 2.40
383 405 0.457509 CTGCAACTGCGAGACGATCT 60.458 55.000 0.00 0.00 45.83 2.75
384 406 1.416813 CCTGCAACTGCGAGACGATC 61.417 60.000 0.00 0.00 45.83 3.69
385 407 1.446792 CCTGCAACTGCGAGACGAT 60.447 57.895 0.00 0.00 45.83 3.73
386 408 2.049156 CCTGCAACTGCGAGACGA 60.049 61.111 0.00 0.00 45.83 4.20
387 409 3.782244 GCCTGCAACTGCGAGACG 61.782 66.667 0.00 0.00 45.83 4.18
388 410 3.426568 GGCCTGCAACTGCGAGAC 61.427 66.667 0.00 0.00 45.83 3.36
389 411 4.704833 GGGCCTGCAACTGCGAGA 62.705 66.667 0.84 0.00 45.83 4.04
391 413 2.476852 TATTGGGCCTGCAACTGCGA 62.477 55.000 4.53 0.00 45.83 5.10
392 414 1.594194 TTATTGGGCCTGCAACTGCG 61.594 55.000 4.53 0.00 45.83 5.18
393 415 0.607620 TTTATTGGGCCTGCAACTGC 59.392 50.000 4.53 0.00 42.50 4.40
394 416 2.159057 GGATTTATTGGGCCTGCAACTG 60.159 50.000 4.53 0.00 0.00 3.16
395 417 2.110578 GGATTTATTGGGCCTGCAACT 58.889 47.619 4.53 0.00 0.00 3.16
396 418 2.110578 AGGATTTATTGGGCCTGCAAC 58.889 47.619 4.53 0.00 0.00 4.17
397 419 2.548464 AGGATTTATTGGGCCTGCAA 57.452 45.000 4.53 0.00 0.00 4.08
398 420 3.398967 AGATAGGATTTATTGGGCCTGCA 59.601 43.478 4.53 0.00 32.04 4.41
399 421 4.013050 GAGATAGGATTTATTGGGCCTGC 58.987 47.826 4.53 0.00 32.04 4.85
400 422 4.256920 CGAGATAGGATTTATTGGGCCTG 58.743 47.826 4.53 0.00 32.04 4.85
401 423 3.264450 CCGAGATAGGATTTATTGGGCCT 59.736 47.826 4.53 0.00 34.56 5.19
402 424 3.610911 CCGAGATAGGATTTATTGGGCC 58.389 50.000 0.00 0.00 0.00 5.80
403 425 3.010420 GCCGAGATAGGATTTATTGGGC 58.990 50.000 0.00 0.00 0.00 5.36
404 426 3.262420 CGCCGAGATAGGATTTATTGGG 58.738 50.000 0.00 0.00 0.00 4.12
405 427 2.673368 GCGCCGAGATAGGATTTATTGG 59.327 50.000 0.00 0.00 0.00 3.16
406 428 3.325870 TGCGCCGAGATAGGATTTATTG 58.674 45.455 4.18 0.00 0.00 1.90
407 429 3.589988 CTGCGCCGAGATAGGATTTATT 58.410 45.455 4.18 0.00 0.00 1.40
408 430 2.093973 CCTGCGCCGAGATAGGATTTAT 60.094 50.000 4.18 0.00 31.91 1.40
409 431 1.272490 CCTGCGCCGAGATAGGATTTA 59.728 52.381 4.18 0.00 31.91 1.40
410 432 0.034059 CCTGCGCCGAGATAGGATTT 59.966 55.000 4.18 0.00 31.91 2.17
411 433 1.668294 CCTGCGCCGAGATAGGATT 59.332 57.895 4.18 0.00 31.91 3.01
412 434 2.936912 GCCTGCGCCGAGATAGGAT 61.937 63.158 13.01 0.00 31.91 3.24
413 435 3.606662 GCCTGCGCCGAGATAGGA 61.607 66.667 13.01 0.00 31.91 2.94
429 451 3.195698 GACGATCTTGGCCACGGC 61.196 66.667 16.74 10.83 41.06 5.68
430 452 1.519455 GAGACGATCTTGGCCACGG 60.519 63.158 16.74 8.33 0.00 4.94
431 453 1.874019 CGAGACGATCTTGGCCACG 60.874 63.158 3.88 8.78 0.00 4.94
432 454 2.167861 GCGAGACGATCTTGGCCAC 61.168 63.158 3.88 0.00 0.00 5.01
433 455 2.184322 GCGAGACGATCTTGGCCA 59.816 61.111 0.00 0.00 0.00 5.36
461 495 4.507756 TCGAATCGAGCAGTTGATTATTGG 59.492 41.667 0.00 0.00 36.98 3.16
485 519 1.280982 GACAGAATCGCTGCGATCAA 58.719 50.000 34.25 10.94 46.30 2.57
544 579 0.837272 GGCTACTAGAACATGGGGCA 59.163 55.000 0.00 0.00 0.00 5.36
545 580 1.070914 GAGGCTACTAGAACATGGGGC 59.929 57.143 0.00 0.00 0.00 5.80
546 581 2.398588 TGAGGCTACTAGAACATGGGG 58.601 52.381 0.00 0.00 0.00 4.96
547 582 4.487714 TTTGAGGCTACTAGAACATGGG 57.512 45.455 0.00 0.00 0.00 4.00
640 675 2.154567 AATGGCTACTCCCGTGACTA 57.845 50.000 0.00 0.00 0.00 2.59
641 676 1.207329 GAAATGGCTACTCCCGTGACT 59.793 52.381 0.00 0.00 0.00 3.41
647 682 1.148498 CCGGGAAATGGCTACTCCC 59.852 63.158 8.63 8.63 44.78 4.30
689 724 3.314553 CAGTGAAAAGCTGCTGGATTTG 58.685 45.455 1.35 0.00 33.51 2.32
736 771 4.372656 GAAGCTACGCTATCTTGGAACAT 58.627 43.478 0.00 0.00 38.25 2.71
737 772 3.430374 GGAAGCTACGCTATCTTGGAACA 60.430 47.826 0.00 0.00 38.25 3.18
739 774 2.223735 CGGAAGCTACGCTATCTTGGAA 60.224 50.000 0.00 0.00 38.25 3.53
741 776 1.067212 ACGGAAGCTACGCTATCTTGG 59.933 52.381 10.28 0.00 38.25 3.61
742 777 2.386249 GACGGAAGCTACGCTATCTTG 58.614 52.381 10.28 0.00 38.25 3.02
743 778 1.002684 CGACGGAAGCTACGCTATCTT 60.003 52.381 10.28 0.00 38.25 2.40
744 779 0.587285 CGACGGAAGCTACGCTATCT 59.413 55.000 10.28 0.00 38.25 1.98
746 781 1.019673 TTCGACGGAAGCTACGCTAT 58.980 50.000 10.28 0.00 38.25 2.97
747 782 0.804364 TTTCGACGGAAGCTACGCTA 59.196 50.000 10.28 0.00 38.25 4.26
748 783 0.038892 TTTTCGACGGAAGCTACGCT 60.039 50.000 10.28 0.00 42.56 5.07
774 813 2.556622 GAGCTCTTCTTATCCCTCCTCG 59.443 54.545 6.43 0.00 0.00 4.63
775 814 2.897326 GGAGCTCTTCTTATCCCTCCTC 59.103 54.545 14.64 0.00 36.73 3.71
776 815 2.754867 CGGAGCTCTTCTTATCCCTCCT 60.755 54.545 14.64 0.00 37.35 3.69
789 828 4.057428 GGACGCACACGGAGCTCT 62.057 66.667 14.64 0.00 46.04 4.09
790 829 3.858868 TTGGACGCACACGGAGCTC 62.859 63.158 4.71 4.71 46.04 4.09
798 837 0.874390 GCTGAAAGATTGGACGCACA 59.126 50.000 0.00 0.00 34.07 4.57
884 924 3.489277 AAGCAAGCAAGCACCGCAC 62.489 57.895 3.19 0.00 36.85 5.34
885 925 3.198236 GAAGCAAGCAAGCACCGCA 62.198 57.895 3.19 0.00 36.85 5.69
886 926 2.429739 GAAGCAAGCAAGCACCGC 60.430 61.111 3.19 0.00 36.85 5.68
887 927 2.256461 GGAAGCAAGCAAGCACCG 59.744 61.111 3.19 0.00 36.85 4.94
924 964 4.224818 GGATATGGGGAGGAAGAAGATGAG 59.775 50.000 0.00 0.00 0.00 2.90
970 1012 1.956170 CAAAGCAGGAGACGTGCGT 60.956 57.895 0.00 0.00 46.06 5.24
971 1013 2.856032 CAAAGCAGGAGACGTGCG 59.144 61.111 0.00 0.00 46.06 5.34
975 1017 1.205064 CAACGCAAAGCAGGAGACG 59.795 57.895 0.00 0.00 0.00 4.18
976 1018 0.235926 GACAACGCAAAGCAGGAGAC 59.764 55.000 0.00 0.00 0.00 3.36
977 1019 0.884704 GGACAACGCAAAGCAGGAGA 60.885 55.000 0.00 0.00 0.00 3.71
978 1020 0.886490 AGGACAACGCAAAGCAGGAG 60.886 55.000 0.00 0.00 0.00 3.69
979 1021 0.465460 AAGGACAACGCAAAGCAGGA 60.465 50.000 0.00 0.00 0.00 3.86
980 1022 0.318107 CAAGGACAACGCAAAGCAGG 60.318 55.000 0.00 0.00 0.00 4.85
981 1023 0.662619 TCAAGGACAACGCAAAGCAG 59.337 50.000 0.00 0.00 0.00 4.24
982 1024 1.001487 CATCAAGGACAACGCAAAGCA 60.001 47.619 0.00 0.00 0.00 3.91
984 1026 1.879380 TCCATCAAGGACAACGCAAAG 59.121 47.619 0.00 0.00 43.07 2.77
985 1027 1.974265 TCCATCAAGGACAACGCAAA 58.026 45.000 0.00 0.00 43.07 3.68
986 1028 3.715871 TCCATCAAGGACAACGCAA 57.284 47.368 0.00 0.00 43.07 4.85
994 1036 3.407967 GCCCCCGTCCATCAAGGA 61.408 66.667 0.00 0.00 46.75 3.36
995 1037 4.506255 GGCCCCCGTCCATCAAGG 62.506 72.222 0.00 0.00 39.47 3.61
1071 1166 4.735132 TGTAGAGCACGGTGCCGC 62.735 66.667 28.14 20.36 46.52 6.53
1085 1180 1.471829 ATCATCCGCCGCCTCATGTA 61.472 55.000 0.00 0.00 0.00 2.29
1086 1181 2.721971 GATCATCCGCCGCCTCATGT 62.722 60.000 0.00 0.00 0.00 3.21
1110 1214 2.281484 GCCTTCTTGTCGCCACCA 60.281 61.111 0.00 0.00 0.00 4.17
1112 1216 4.090057 GCGCCTTCTTGTCGCCAC 62.090 66.667 0.00 0.00 42.71 5.01
1208 1312 0.184933 TGTTGGTGTGGAAGGGGAAG 59.815 55.000 0.00 0.00 0.00 3.46
1209 1313 0.106419 GTGTTGGTGTGGAAGGGGAA 60.106 55.000 0.00 0.00 0.00 3.97
1210 1314 1.534697 GTGTTGGTGTGGAAGGGGA 59.465 57.895 0.00 0.00 0.00 4.81
1212 1316 1.147376 TCGTGTTGGTGTGGAAGGG 59.853 57.895 0.00 0.00 0.00 3.95
1215 1319 0.745128 GTGGTCGTGTTGGTGTGGAA 60.745 55.000 0.00 0.00 0.00 3.53
1216 1320 1.153329 GTGGTCGTGTTGGTGTGGA 60.153 57.895 0.00 0.00 0.00 4.02
1217 1321 1.450491 TGTGGTCGTGTTGGTGTGG 60.450 57.895 0.00 0.00 0.00 4.17
1218 1322 1.711060 GGTGTGGTCGTGTTGGTGTG 61.711 60.000 0.00 0.00 0.00 3.82
1219 1323 1.450669 GGTGTGGTCGTGTTGGTGT 60.451 57.895 0.00 0.00 0.00 4.16
1220 1324 1.153249 AGGTGTGGTCGTGTTGGTG 60.153 57.895 0.00 0.00 0.00 4.17
1221 1325 1.153249 CAGGTGTGGTCGTGTTGGT 60.153 57.895 0.00 0.00 0.00 3.67
1222 1326 2.542907 GCAGGTGTGGTCGTGTTGG 61.543 63.158 0.00 0.00 0.00 3.77
1223 1327 1.095228 AAGCAGGTGTGGTCGTGTTG 61.095 55.000 0.00 0.00 31.46 3.33
1224 1328 0.466543 TAAGCAGGTGTGGTCGTGTT 59.533 50.000 0.00 0.00 31.46 3.32
1225 1329 0.033504 CTAAGCAGGTGTGGTCGTGT 59.966 55.000 0.00 0.00 31.46 4.49
1226 1330 0.033504 ACTAAGCAGGTGTGGTCGTG 59.966 55.000 0.00 0.00 31.46 4.35
1227 1331 0.756903 AACTAAGCAGGTGTGGTCGT 59.243 50.000 0.00 0.00 31.46 4.34
1228 1332 1.429463 GAACTAAGCAGGTGTGGTCG 58.571 55.000 0.00 0.00 31.46 4.79
1229 1333 1.348036 AGGAACTAAGCAGGTGTGGTC 59.652 52.381 0.00 0.00 36.02 4.02
1230 1334 1.435256 AGGAACTAAGCAGGTGTGGT 58.565 50.000 0.00 0.00 36.02 4.16
1256 1360 2.111756 GCAGACACGAAACTTTGCTTG 58.888 47.619 0.00 0.00 0.00 4.01
1257 1361 1.065551 GGCAGACACGAAACTTTGCTT 59.934 47.619 0.00 0.00 0.00 3.91
1258 1362 0.663153 GGCAGACACGAAACTTTGCT 59.337 50.000 0.00 0.00 0.00 3.91
1259 1363 0.663153 AGGCAGACACGAAACTTTGC 59.337 50.000 0.00 0.00 0.00 3.68
1287 1391 1.157870 AACACGCACGGTTGGAAGAG 61.158 55.000 0.00 0.00 0.00 2.85
1464 1569 9.261035 AGAATAGAGTTCAGAGTAAGAATGGAA 57.739 33.333 0.00 0.00 0.00 3.53
1471 1576 9.868277 ACATTTCAGAATAGAGTTCAGAGTAAG 57.132 33.333 0.00 0.00 0.00 2.34
1479 1584 8.779354 AAGTGGTACATTTCAGAATAGAGTTC 57.221 34.615 0.00 0.00 44.52 3.01
1482 1587 9.003658 ACAAAAGTGGTACATTTCAGAATAGAG 57.996 33.333 0.00 0.00 44.52 2.43
1487 1592 6.568869 CCAACAAAAGTGGTACATTTCAGAA 58.431 36.000 0.00 0.00 44.52 3.02
1499 1604 1.756538 AGCCTGAACCAACAAAAGTGG 59.243 47.619 0.00 0.00 42.28 4.00
1501 1606 1.136891 GCAGCCTGAACCAACAAAAGT 59.863 47.619 0.00 0.00 0.00 2.66
1503 1608 1.189752 TGCAGCCTGAACCAACAAAA 58.810 45.000 0.00 0.00 0.00 2.44
1504 1609 1.189752 TTGCAGCCTGAACCAACAAA 58.810 45.000 0.00 0.00 0.00 2.83
1505 1610 1.068895 CATTGCAGCCTGAACCAACAA 59.931 47.619 0.00 0.00 0.00 2.83
1511 1616 0.524862 CTGGTCATTGCAGCCTGAAC 59.475 55.000 0.00 3.63 0.00 3.18
1517 1622 0.815734 ATTCAGCTGGTCATTGCAGC 59.184 50.000 15.13 7.87 41.85 5.25
1524 1629 5.451798 GGAAACTTGAAAATTCAGCTGGTCA 60.452 40.000 15.13 7.31 38.61 4.02
1528 1633 4.039609 AGGGGAAACTTGAAAATTCAGCTG 59.960 41.667 7.63 7.63 38.61 4.24
1542 1647 7.065504 AGAGTATATACGTACAAGGGGAAACT 58.934 38.462 7.23 0.00 0.00 2.66
1543 1648 7.282332 AGAGTATATACGTACAAGGGGAAAC 57.718 40.000 7.23 0.00 0.00 2.78
1560 1665 8.427902 TGGACGAACCTATCTAGTAGAGTATA 57.572 38.462 5.98 0.00 39.86 1.47
1561 1666 7.313740 TGGACGAACCTATCTAGTAGAGTAT 57.686 40.000 5.98 0.00 39.86 2.12
1563 1668 5.627182 TGGACGAACCTATCTAGTAGAGT 57.373 43.478 5.98 0.00 39.86 3.24
1585 1690 3.525800 AGTTAGGAACAGCCAATGGTT 57.474 42.857 0.00 0.00 40.02 3.67
1592 1729 3.374367 GGAATTCGAAGTTAGGAACAGCC 59.626 47.826 3.35 0.00 0.00 4.85
1594 1731 6.743575 ATTGGAATTCGAAGTTAGGAACAG 57.256 37.500 8.88 0.00 0.00 3.16
1600 1737 5.671140 CGCGTTTATTGGAATTCGAAGTTAG 59.329 40.000 8.88 1.32 0.00 2.34
1601 1738 5.552807 CGCGTTTATTGGAATTCGAAGTTA 58.447 37.500 8.88 0.00 0.00 2.24
1609 1746 2.097466 CCTCTGCGCGTTTATTGGAATT 59.903 45.455 8.43 0.00 0.00 2.17
1610 1747 1.670811 CCTCTGCGCGTTTATTGGAAT 59.329 47.619 8.43 0.00 0.00 3.01
1614 1751 1.261619 GGATCCTCTGCGCGTTTATTG 59.738 52.381 8.43 0.00 0.00 1.90
1617 1762 1.143183 GGGATCCTCTGCGCGTTTA 59.857 57.895 12.58 0.00 0.00 2.01
1623 1768 2.818132 GGTCTGGGATCCTCTGCG 59.182 66.667 12.58 0.00 0.00 5.18
1630 1775 4.899239 CGGCTGCGGTCTGGGATC 62.899 72.222 0.00 0.00 0.00 3.36
1643 1788 4.841617 TCTCCTGATCGCCCGGCT 62.842 66.667 8.05 0.00 0.00 5.52
1651 1796 7.284489 AGTGTTCTTATGACTACTCTCCTGATC 59.716 40.741 0.00 0.00 0.00 2.92
1652 1797 7.068103 CAGTGTTCTTATGACTACTCTCCTGAT 59.932 40.741 0.00 0.00 0.00 2.90
1663 1808 3.999663 GCAGCTTCAGTGTTCTTATGACT 59.000 43.478 0.00 0.00 0.00 3.41
1687 1832 0.323725 GCAGCAAGATCCCCCAGAAA 60.324 55.000 0.00 0.00 0.00 2.52
1712 1857 3.933886 ACTGGGGTGTAGATGATCAGAT 58.066 45.455 0.09 0.00 0.00 2.90
1713 1858 3.404869 ACTGGGGTGTAGATGATCAGA 57.595 47.619 0.09 0.00 0.00 3.27
1716 1861 3.643792 AGCTAACTGGGGTGTAGATGATC 59.356 47.826 0.00 0.00 0.00 2.92
1719 1864 3.452627 AGAAGCTAACTGGGGTGTAGATG 59.547 47.826 0.00 0.00 0.00 2.90
1722 1871 3.983044 AAGAAGCTAACTGGGGTGTAG 57.017 47.619 0.00 0.00 0.00 2.74
1749 1916 2.036256 GCATCAGGTGTTGGCCCT 59.964 61.111 0.00 0.00 0.00 5.19
1750 1917 0.323360 TAAGCATCAGGTGTTGGCCC 60.323 55.000 0.00 0.00 0.00 5.80
1751 1918 1.544724 TTAAGCATCAGGTGTTGGCC 58.455 50.000 0.00 0.00 0.00 5.36
1753 1920 4.381932 GGGAATTTAAGCATCAGGTGTTGG 60.382 45.833 0.00 0.00 0.00 3.77
1754 1921 4.381932 GGGGAATTTAAGCATCAGGTGTTG 60.382 45.833 0.00 0.00 0.00 3.33
1756 1923 3.011708 AGGGGAATTTAAGCATCAGGTGT 59.988 43.478 0.00 0.00 0.00 4.16
1758 1925 3.529319 AGAGGGGAATTTAAGCATCAGGT 59.471 43.478 0.00 0.00 0.00 4.00
1759 1926 4.176120 AGAGGGGAATTTAAGCATCAGG 57.824 45.455 0.00 0.00 0.00 3.86
1760 1927 5.680665 GCAAAGAGGGGAATTTAAGCATCAG 60.681 44.000 0.00 0.00 0.00 2.90
1761 1928 4.160252 GCAAAGAGGGGAATTTAAGCATCA 59.840 41.667 0.00 0.00 0.00 3.07
1762 1929 4.160252 TGCAAAGAGGGGAATTTAAGCATC 59.840 41.667 0.00 0.00 0.00 3.91
1763 1930 4.095946 TGCAAAGAGGGGAATTTAAGCAT 58.904 39.130 0.00 0.00 0.00 3.79
1764 1931 3.505386 TGCAAAGAGGGGAATTTAAGCA 58.495 40.909 0.00 0.00 0.00 3.91
1765 1932 4.535526 TTGCAAAGAGGGGAATTTAAGC 57.464 40.909 0.00 0.00 0.00 3.09
1781 2000 7.288810 ACTTGTTAGAATTCCATCTTTGCAA 57.711 32.000 0.65 0.00 0.00 4.08
1790 2009 7.502226 AGACATTGTCAACTTGTTAGAATTCCA 59.498 33.333 18.57 0.00 34.60 3.53
1792 2011 8.559536 TGAGACATTGTCAACTTGTTAGAATTC 58.440 33.333 18.57 0.00 34.60 2.17
1803 2022 6.475504 TGAATATGGTGAGACATTGTCAACT 58.524 36.000 18.57 0.00 34.60 3.16
1804 2023 6.183360 CCTGAATATGGTGAGACATTGTCAAC 60.183 42.308 18.57 14.89 34.60 3.18
1806 2025 5.045651 ACCTGAATATGGTGAGACATTGTCA 60.046 40.000 18.57 0.00 36.30 3.58
1807 2026 5.431765 ACCTGAATATGGTGAGACATTGTC 58.568 41.667 8.82 8.82 36.30 3.18
1808 2027 5.441718 ACCTGAATATGGTGAGACATTGT 57.558 39.130 0.00 0.00 36.30 2.71
1866 2091 5.124297 CCATCTTATGTGCTTCATGTCAACA 59.876 40.000 0.00 0.00 37.91 3.33
1910 2135 7.452630 TGTAAAGTAAATTTTGCGTGGTTTC 57.547 32.000 0.00 0.00 32.01 2.78
1912 2137 8.354426 AGTATGTAAAGTAAATTTTGCGTGGTT 58.646 29.630 0.00 0.00 32.01 3.67
1915 2140 9.388346 TCAAGTATGTAAAGTAAATTTTGCGTG 57.612 29.630 0.00 0.00 32.01 5.34
1927 2152 9.878599 CATTCGTTCTTTTCAAGTATGTAAAGT 57.121 29.630 7.49 0.00 41.80 2.66
1931 2156 7.428282 TGCATTCGTTCTTTTCAAGTATGTA 57.572 32.000 0.00 0.00 0.00 2.29
1932 2157 6.312399 TGCATTCGTTCTTTTCAAGTATGT 57.688 33.333 0.00 0.00 0.00 2.29
1933 2158 7.162546 CGTATGCATTCGTTCTTTTCAAGTATG 59.837 37.037 16.59 0.00 0.00 2.39
1934 2159 7.148474 ACGTATGCATTCGTTCTTTTCAAGTAT 60.148 33.333 23.47 0.00 36.93 2.12
1948 2173 1.202417 ACTCCCTGACGTATGCATTCG 60.202 52.381 22.14 22.14 0.00 3.34
1950 2175 1.831106 TCACTCCCTGACGTATGCATT 59.169 47.619 3.54 0.00 0.00 3.56
1958 2185 5.631026 CAAATACAAAATCACTCCCTGACG 58.369 41.667 0.00 0.00 0.00 4.35
1959 2186 5.183904 AGCAAATACAAAATCACTCCCTGAC 59.816 40.000 0.00 0.00 0.00 3.51
1960 2187 5.324409 AGCAAATACAAAATCACTCCCTGA 58.676 37.500 0.00 0.00 0.00 3.86
1964 2191 7.370383 TGAAGAAGCAAATACAAAATCACTCC 58.630 34.615 0.00 0.00 0.00 3.85
1977 2204 3.446516 GGCAATCCTCTGAAGAAGCAAAT 59.553 43.478 6.46 0.00 0.00 2.32
2014 2244 1.599542 GCGATCTCCATAACTGCAACC 59.400 52.381 0.00 0.00 0.00 3.77
2017 2247 2.279741 GTTGCGATCTCCATAACTGCA 58.720 47.619 0.00 0.00 0.00 4.41
2023 2253 3.616821 CGTCTTTTGTTGCGATCTCCATA 59.383 43.478 0.00 0.00 0.00 2.74
2026 2256 1.464189 GCGTCTTTTGTTGCGATCTCC 60.464 52.381 0.00 0.00 0.00 3.71
2035 2265 0.942252 GAACCCTCGCGTCTTTTGTT 59.058 50.000 5.77 2.45 0.00 2.83
2038 2268 0.602905 CCTGAACCCTCGCGTCTTTT 60.603 55.000 5.77 0.00 0.00 2.27
2101 2331 7.125507 ACATCAAAAAGCATATACCATTGGGAA 59.874 33.333 7.78 0.00 38.05 3.97
2116 2346 7.647907 AACAATTCAGATGACATCAAAAAGC 57.352 32.000 17.57 0.00 0.00 3.51
2117 2347 9.350357 CCTAACAATTCAGATGACATCAAAAAG 57.650 33.333 17.57 9.92 0.00 2.27
2118 2348 7.814107 GCCTAACAATTCAGATGACATCAAAAA 59.186 33.333 17.57 8.56 0.00 1.94
2119 2349 7.039853 TGCCTAACAATTCAGATGACATCAAAA 60.040 33.333 17.57 10.86 0.00 2.44
2120 2350 6.433716 TGCCTAACAATTCAGATGACATCAAA 59.566 34.615 17.57 11.19 0.00 2.69
2140 2389 5.297527 CAGTATGTGAAATCTGCAATGCCTA 59.702 40.000 1.53 0.00 0.00 3.93
2142 2391 4.096833 TCAGTATGTGAAATCTGCAATGCC 59.903 41.667 1.53 0.00 37.40 4.40
2164 2413 6.985188 TGTAGATAAACAGAAGCCACAATC 57.015 37.500 0.00 0.00 0.00 2.67
2173 2422 6.312918 GCGACAATCCTTGTAGATAAACAGAA 59.687 38.462 4.59 0.00 45.52 3.02
2179 2428 5.670485 ACATGCGACAATCCTTGTAGATAA 58.330 37.500 4.59 0.00 45.52 1.75
2211 2460 4.559862 AACAAGGGACAAGTAGATCAGG 57.440 45.455 0.00 0.00 0.00 3.86
2322 2571 7.986085 AAAGAAAGTAAAATGAGCAGAGCTA 57.014 32.000 0.00 0.00 39.88 3.32
2347 2602 7.277539 GGAACATCAACAATTTCACAAGAACAA 59.722 33.333 0.00 0.00 32.39 2.83
2349 2604 6.756074 TGGAACATCAACAATTTCACAAGAAC 59.244 34.615 0.00 0.00 32.39 3.01
2452 2766 6.912591 AGTAGATTGTTTTTGAAGACGCAAAG 59.087 34.615 0.00 0.00 38.80 2.77
2456 2770 5.846473 GTCAGTAGATTGTTTTTGAAGACGC 59.154 40.000 0.00 0.00 0.00 5.19
2458 2772 9.567848 TTTTGTCAGTAGATTGTTTTTGAAGAC 57.432 29.630 0.00 0.00 0.00 3.01
2493 2807 1.946768 GCTTGCCCAGCGATATGTTTA 59.053 47.619 0.00 0.00 39.29 2.01
2496 2810 4.147701 GCTTGCCCAGCGATATGT 57.852 55.556 0.00 0.00 39.29 2.29
2728 3085 6.019075 TCAGACAACACTGTAAATGAGTTTCG 60.019 38.462 0.00 0.00 38.79 3.46
2752 3109 4.335594 GTGCCACAGGTCACCTAATAAATC 59.664 45.833 0.00 0.00 29.64 2.17
2757 3114 1.064003 TGTGCCACAGGTCACCTAAT 58.936 50.000 0.00 0.00 31.92 1.73
2922 3281 6.089249 AGAGTTTGGAAATAACTGCAAAGG 57.911 37.500 0.00 0.00 37.31 3.11
2937 3296 0.879090 GTTGGCGGGTAAGAGTTTGG 59.121 55.000 0.00 0.00 0.00 3.28
2965 3324 0.098376 GTACAGTCCTGCGTAGACCG 59.902 60.000 0.53 0.00 34.67 4.79
3075 3438 4.552355 CGTTGACACCACACAGAATACTA 58.448 43.478 0.00 0.00 0.00 1.82
3076 3439 3.390135 CGTTGACACCACACAGAATACT 58.610 45.455 0.00 0.00 0.00 2.12
3077 3440 2.478894 CCGTTGACACCACACAGAATAC 59.521 50.000 0.00 0.00 0.00 1.89
3078 3441 2.549134 CCCGTTGACACCACACAGAATA 60.549 50.000 0.00 0.00 0.00 1.75
3079 3442 1.593196 CCGTTGACACCACACAGAAT 58.407 50.000 0.00 0.00 0.00 2.40
3080 3443 0.462937 CCCGTTGACACCACACAGAA 60.463 55.000 0.00 0.00 0.00 3.02
3082 3445 1.891919 CCCCGTTGACACCACACAG 60.892 63.158 0.00 0.00 0.00 3.66
3084 3447 2.406002 ATCCCCCGTTGACACCACAC 62.406 60.000 0.00 0.00 0.00 3.82
3086 3449 0.538746 AAATCCCCCGTTGACACCAC 60.539 55.000 0.00 0.00 0.00 4.16
3087 3450 0.250989 GAAATCCCCCGTTGACACCA 60.251 55.000 0.00 0.00 0.00 4.17
3088 3451 0.037734 AGAAATCCCCCGTTGACACC 59.962 55.000 0.00 0.00 0.00 4.16
3089 3452 1.165270 CAGAAATCCCCCGTTGACAC 58.835 55.000 0.00 0.00 0.00 3.67
3090 3453 1.060729 TCAGAAATCCCCCGTTGACA 58.939 50.000 0.00 0.00 0.00 3.58
3091 3454 2.289565 GATCAGAAATCCCCCGTTGAC 58.710 52.381 0.00 0.00 0.00 3.18
3092 3455 1.912731 TGATCAGAAATCCCCCGTTGA 59.087 47.619 0.00 0.00 0.00 3.18
3093 3456 2.418368 TGATCAGAAATCCCCCGTTG 57.582 50.000 0.00 0.00 0.00 4.10
3094 3457 2.509548 TGATGATCAGAAATCCCCCGTT 59.490 45.455 0.09 0.00 0.00 4.44
3095 3458 2.126882 TGATGATCAGAAATCCCCCGT 58.873 47.619 0.09 0.00 0.00 5.28
3140 3524 3.758300 CAACAAGGAACAGTGTCAACAC 58.242 45.455 5.11 5.11 46.77 3.32
3180 3566 3.441163 GATGATCGTACTTAACACCGCA 58.559 45.455 0.00 0.00 0.00 5.69
3246 3632 2.957402 AAAAGCCTGACATGTGAGGA 57.043 45.000 32.57 0.00 35.91 3.71
3292 3710 6.969366 TCAGGAACAATAAACATGTCAACAG 58.031 36.000 0.00 0.00 0.00 3.16
3330 3752 1.741706 CACTGCTTTAGCCTGTCCATG 59.258 52.381 0.00 0.00 41.18 3.66
3364 3786 0.404040 CCGAGGAGGAGGAGAGCTAT 59.596 60.000 0.00 0.00 45.00 2.97
3442 3873 7.667043 TGGAAACATGTATGAGTTGTAACTC 57.333 36.000 15.94 15.94 45.45 3.01
3448 3879 5.248640 AGGAGTGGAAACATGTATGAGTTG 58.751 41.667 0.00 0.00 46.14 3.16
3477 3908 6.377327 AACTTTGTTGAATCGTGTTCAGAT 57.623 33.333 6.22 0.00 0.00 2.90
3484 3915 4.601019 AGAGCAAACTTTGTTGAATCGTG 58.399 39.130 3.48 0.00 0.00 4.35
3510 3941 1.470098 GGAATCGCTGCAGTGAAATGT 59.530 47.619 31.95 17.96 38.15 2.71
3517 3948 0.610174 TTCAGAGGAATCGCTGCAGT 59.390 50.000 16.64 0.00 40.04 4.40
3518 3949 1.005340 GTTCAGAGGAATCGCTGCAG 58.995 55.000 10.11 10.11 40.04 4.41
3552 3983 1.656095 GTCACGCAGATGTAACTGAGC 59.344 52.381 0.00 0.00 40.37 4.26
3659 4090 7.095910 TGCCGATGTTCAATTGTTCATTAATT 58.904 30.769 5.13 0.00 0.00 1.40
3703 4140 7.395489 GGCTGTCATATGGAGGATTTTGAATAT 59.605 37.037 2.13 0.00 0.00 1.28
3705 4142 5.537674 GGCTGTCATATGGAGGATTTTGAAT 59.462 40.000 2.13 0.00 0.00 2.57
3706 4143 4.889409 GGCTGTCATATGGAGGATTTTGAA 59.111 41.667 2.13 0.00 0.00 2.69
3707 4144 4.166725 AGGCTGTCATATGGAGGATTTTGA 59.833 41.667 2.13 0.00 0.00 2.69
3708 4145 4.277672 CAGGCTGTCATATGGAGGATTTTG 59.722 45.833 6.28 0.00 0.00 2.44
3709 4146 4.166725 TCAGGCTGTCATATGGAGGATTTT 59.833 41.667 15.27 0.00 0.00 1.82
3727 4189 6.489361 AGATTTGAATATTCAGGATGTCAGGC 59.511 38.462 17.28 4.73 38.61 4.85
3728 4190 8.461249 AAGATTTGAATATTCAGGATGTCAGG 57.539 34.615 17.28 0.00 38.61 3.86
3730 4192 8.054572 TGGAAGATTTGAATATTCAGGATGTCA 58.945 33.333 17.28 9.76 38.13 3.58
3731 4193 8.455903 TGGAAGATTTGAATATTCAGGATGTC 57.544 34.615 17.28 13.00 38.13 3.06
3732 4194 8.857098 CATGGAAGATTTGAATATTCAGGATGT 58.143 33.333 17.28 11.59 38.13 3.06
3733 4195 8.304596 CCATGGAAGATTTGAATATTCAGGATG 58.695 37.037 17.28 11.15 38.13 3.51
3735 4197 6.266103 GCCATGGAAGATTTGAATATTCAGGA 59.734 38.462 18.40 11.25 38.13 3.86
3736 4198 6.267014 AGCCATGGAAGATTTGAATATTCAGG 59.733 38.462 18.40 12.13 38.13 3.86
3738 4200 6.834969 TCAGCCATGGAAGATTTGAATATTCA 59.165 34.615 18.40 14.23 38.13 2.57
3739 4201 7.144000 GTCAGCCATGGAAGATTTGAATATTC 58.856 38.462 18.40 8.60 36.24 1.75
3740 4202 6.608405 TGTCAGCCATGGAAGATTTGAATATT 59.392 34.615 18.40 0.00 0.00 1.28
3741 4203 6.131264 TGTCAGCCATGGAAGATTTGAATAT 58.869 36.000 18.40 0.00 0.00 1.28
3743 4205 4.346730 TGTCAGCCATGGAAGATTTGAAT 58.653 39.130 18.40 0.00 0.00 2.57
3744 4206 3.765381 TGTCAGCCATGGAAGATTTGAA 58.235 40.909 18.40 0.00 0.00 2.69
3745 4207 3.438216 TGTCAGCCATGGAAGATTTGA 57.562 42.857 18.40 5.71 0.00 2.69
3746 4208 3.067742 GGATGTCAGCCATGGAAGATTTG 59.932 47.826 18.40 3.29 32.56 2.32
3747 4209 3.053095 AGGATGTCAGCCATGGAAGATTT 60.053 43.478 18.40 3.73 32.56 2.17
3797 4271 3.579302 TGGGGAAGCCACCAGGTG 61.579 66.667 13.35 13.35 37.19 4.00
3836 4310 1.438651 GCAGTGGTGCGAAGACATAA 58.561 50.000 0.00 0.00 40.71 1.90
3902 4376 1.090052 GGAAACCCTCGAAGATGCCG 61.090 60.000 0.00 0.00 33.89 5.69
3917 4391 1.053424 AGTACCAGCCGTTGAGGAAA 58.947 50.000 0.00 0.00 45.00 3.13
3956 4430 0.237498 GGTTCGTTGCAGTTACCAGC 59.763 55.000 4.95 0.00 0.00 4.85
3970 4444 2.930385 ATCGATGGCAGGCAGGTTCG 62.930 60.000 11.27 11.27 0.00 3.95
3977 4451 2.663188 GGTCGATCGATGGCAGGC 60.663 66.667 22.50 6.07 0.00 4.85
4011 4485 6.675987 ACAGAATTTCTCTTTCTCAACATGC 58.324 36.000 0.00 0.00 31.11 4.06
4014 4488 6.260936 GGTGACAGAATTTCTCTTTCTCAACA 59.739 38.462 0.00 0.00 32.82 3.33
4016 4490 6.260936 GTGGTGACAGAATTTCTCTTTCTCAA 59.739 38.462 0.00 0.00 44.46 3.02
4024 4498 3.141398 TGCAGTGGTGACAGAATTTCTC 58.859 45.455 0.00 0.00 44.46 2.87
4025 4499 3.144506 CTGCAGTGGTGACAGAATTTCT 58.855 45.455 5.25 0.00 44.46 2.52
4026 4500 2.227388 CCTGCAGTGGTGACAGAATTTC 59.773 50.000 13.81 0.00 44.46 2.17
4027 4501 2.233271 CCTGCAGTGGTGACAGAATTT 58.767 47.619 13.81 0.00 44.46 1.82
4028 4502 1.143684 ACCTGCAGTGGTGACAGAATT 59.856 47.619 13.81 0.00 44.46 2.17
4029 4503 0.767375 ACCTGCAGTGGTGACAGAAT 59.233 50.000 13.81 0.00 44.46 2.40
4190 4664 0.461961 ATGTCTTCCTGGCTCGCTAC 59.538 55.000 0.00 0.00 0.00 3.58
4195 4669 0.460987 CACCGATGTCTTCCTGGCTC 60.461 60.000 0.00 0.00 0.00 4.70
4218 4692 2.094803 TCCAACACACACAAGCAAACAG 60.095 45.455 0.00 0.00 0.00 3.16
4219 4693 1.889170 TCCAACACACACAAGCAAACA 59.111 42.857 0.00 0.00 0.00 2.83
4220 4694 2.645730 TCCAACACACACAAGCAAAC 57.354 45.000 0.00 0.00 0.00 2.93
4256 4730 5.612865 GTTTCTTGTCTTCTTACGCAGATG 58.387 41.667 0.00 0.00 0.00 2.90
4259 4733 3.734231 TCGTTTCTTGTCTTCTTACGCAG 59.266 43.478 0.00 0.00 0.00 5.18
4262 4736 5.913514 TCTTCTCGTTTCTTGTCTTCTTACG 59.086 40.000 0.00 0.00 0.00 3.18
4269 4743 7.495934 TCAATCTTTTCTTCTCGTTTCTTGTCT 59.504 33.333 0.00 0.00 0.00 3.41
4280 4754 5.704978 AGTGAGCCTTCAATCTTTTCTTCTC 59.295 40.000 0.00 0.00 34.49 2.87
4315 4789 0.531311 CTGCATCTGCTCGCCACATA 60.531 55.000 3.53 0.00 42.66 2.29
4326 4800 1.649664 GTAGGTGTGCTCTGCATCTG 58.350 55.000 0.00 0.00 41.91 2.90
4327 4801 0.539051 GGTAGGTGTGCTCTGCATCT 59.461 55.000 0.00 0.00 41.91 2.90
4328 4802 0.250234 TGGTAGGTGTGCTCTGCATC 59.750 55.000 0.00 0.00 41.91 3.91
4329 4803 0.251354 CTGGTAGGTGTGCTCTGCAT 59.749 55.000 0.00 0.00 41.91 3.96
4330 4804 1.673477 CTGGTAGGTGTGCTCTGCA 59.327 57.895 0.00 0.00 35.60 4.41
4331 4805 1.743252 GCTGGTAGGTGTGCTCTGC 60.743 63.158 0.00 0.00 0.00 4.26
4332 4806 1.446792 CGCTGGTAGGTGTGCTCTG 60.447 63.158 0.00 0.00 0.00 3.35
4349 4823 0.905357 ACTTTGATCTCCCACTCCCG 59.095 55.000 0.00 0.00 0.00 5.14
4372 4846 2.309528 TAGCAAGTAATGGGCAGTCG 57.690 50.000 0.00 0.00 0.00 4.18
4397 4872 4.635699 ATTTTGAAACGGAGGGAGTACT 57.364 40.909 0.00 0.00 0.00 2.73
4398 4873 5.727434 TCTATTTTGAAACGGAGGGAGTAC 58.273 41.667 0.00 0.00 0.00 2.73
4399 4874 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
4400 4875 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
4401 4876 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
4402 4877 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
4403 4878 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
4404 4879 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
4405 4880 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
4406 4881 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
4407 4882 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
4408 4883 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
4409 4884 7.926018 ACAAAGTTGGGTCATCTATTTTGAAAC 59.074 33.333 0.00 0.00 0.00 2.78
4410 4885 8.017418 ACAAAGTTGGGTCATCTATTTTGAAA 57.983 30.769 0.00 0.00 0.00 2.69
4411 4886 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
4412 4887 7.942341 AGTACAAAGTTGGGTCATCTATTTTGA 59.058 33.333 0.00 0.00 0.00 2.69
4413 4888 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
4414 4889 9.227777 GTAGTACAAAGTTGGGTCATCTATTTT 57.772 33.333 0.00 0.00 0.00 1.82
4415 4890 8.603304 AGTAGTACAAAGTTGGGTCATCTATTT 58.397 33.333 2.52 0.00 0.00 1.40
4416 4891 8.147244 AGTAGTACAAAGTTGGGTCATCTATT 57.853 34.615 2.52 0.00 0.00 1.73
4417 4892 7.735326 AGTAGTACAAAGTTGGGTCATCTAT 57.265 36.000 2.52 0.00 0.00 1.98
4418 4893 8.654485 TTAGTAGTACAAAGTTGGGTCATCTA 57.346 34.615 2.52 0.00 0.00 1.98
4419 4894 7.549147 TTAGTAGTACAAAGTTGGGTCATCT 57.451 36.000 2.52 0.00 0.00 2.90
4420 4895 7.148457 GCTTTAGTAGTACAAAGTTGGGTCATC 60.148 40.741 18.31 4.19 34.82 2.92
4421 4896 6.653740 GCTTTAGTAGTACAAAGTTGGGTCAT 59.346 38.462 18.31 0.00 34.82 3.06
4422 4897 5.993441 GCTTTAGTAGTACAAAGTTGGGTCA 59.007 40.000 18.31 0.00 34.82 4.02
4423 4898 6.228995 AGCTTTAGTAGTACAAAGTTGGGTC 58.771 40.000 18.31 7.77 34.82 4.46
4424 4899 6.183810 AGCTTTAGTAGTACAAAGTTGGGT 57.816 37.500 18.31 5.06 34.82 4.51
4425 4900 7.384477 ACTAGCTTTAGTAGTACAAAGTTGGG 58.616 38.462 18.80 14.60 34.82 4.12
4426 4901 9.351570 GTACTAGCTTTAGTAGTACAAAGTTGG 57.648 37.037 15.71 17.08 46.59 3.77
4435 4910 8.526147 CCCAACTTTGTACTAGCTTTAGTAGTA 58.474 37.037 0.00 0.00 33.64 1.82
4436 4911 7.015974 ACCCAACTTTGTACTAGCTTTAGTAGT 59.984 37.037 0.00 0.00 33.64 2.73
4437 4912 7.384477 ACCCAACTTTGTACTAGCTTTAGTAG 58.616 38.462 0.00 0.00 33.64 2.57
4438 4913 7.015487 TGACCCAACTTTGTACTAGCTTTAGTA 59.985 37.037 0.00 0.00 0.00 1.82
4439 4914 6.183361 TGACCCAACTTTGTACTAGCTTTAGT 60.183 38.462 0.00 0.00 0.00 2.24
4440 4915 6.228258 TGACCCAACTTTGTACTAGCTTTAG 58.772 40.000 0.00 0.00 0.00 1.85
4441 4916 6.177310 TGACCCAACTTTGTACTAGCTTTA 57.823 37.500 0.00 0.00 0.00 1.85
4442 4917 5.043737 TGACCCAACTTTGTACTAGCTTT 57.956 39.130 0.00 0.00 0.00 3.51
4443 4918 4.699925 TGACCCAACTTTGTACTAGCTT 57.300 40.909 0.00 0.00 0.00 3.74
4444 4919 4.910458 ATGACCCAACTTTGTACTAGCT 57.090 40.909 0.00 0.00 0.00 3.32
4445 4920 5.959618 AAATGACCCAACTTTGTACTAGC 57.040 39.130 0.00 0.00 0.00 3.42
4470 4945 4.279671 TGTACGTACTCCCTCCGTTAAAAA 59.720 41.667 25.12 0.00 36.12 1.94
4471 4946 3.823873 TGTACGTACTCCCTCCGTTAAAA 59.176 43.478 25.12 0.00 36.12 1.52
4472 4947 3.417101 TGTACGTACTCCCTCCGTTAAA 58.583 45.455 25.12 0.00 36.12 1.52
4473 4948 3.066291 TGTACGTACTCCCTCCGTTAA 57.934 47.619 25.12 0.00 36.12 2.01
4474 4949 2.779755 TGTACGTACTCCCTCCGTTA 57.220 50.000 25.12 0.00 36.12 3.18
4475 4950 2.134789 ATGTACGTACTCCCTCCGTT 57.865 50.000 25.12 0.00 36.12 4.44
4476 4951 2.134789 AATGTACGTACTCCCTCCGT 57.865 50.000 25.12 0.00 38.53 4.69
4477 4952 2.424601 TGAAATGTACGTACTCCCTCCG 59.575 50.000 25.12 0.00 0.00 4.63
4478 4953 4.667519 ATGAAATGTACGTACTCCCTCC 57.332 45.455 25.12 10.78 0.00 4.30
4479 4954 6.630444 TCTATGAAATGTACGTACTCCCTC 57.370 41.667 25.12 16.08 0.00 4.30
4480 4955 7.414222 TTTCTATGAAATGTACGTACTCCCT 57.586 36.000 25.12 8.35 0.00 4.20
4481 4956 8.548721 CATTTTCTATGAAATGTACGTACTCCC 58.451 37.037 25.12 12.63 40.46 4.30
4482 4957 9.309516 TCATTTTCTATGAAATGTACGTACTCC 57.690 33.333 25.12 12.32 43.89 3.85
4500 4975 8.617290 ACTAAACCGACAACTTATCATTTTCT 57.383 30.769 0.00 0.00 0.00 2.52
4522 4997 2.083774 CGCCCTTTCAGCAAATGACTA 58.916 47.619 0.00 0.00 37.77 2.59
4524 4999 0.733909 GCGCCCTTTCAGCAAATGAC 60.734 55.000 0.00 0.00 37.77 3.06
4556 5031 0.822532 GCTTCTGCCTGGGATCATGG 60.823 60.000 0.00 0.00 0.00 3.66
4567 5042 1.815840 GCTTACTCCCGCTTCTGCC 60.816 63.158 0.00 0.00 35.36 4.85
4638 5113 7.441157 TGCAATTTACTCCATATGCTACACTAC 59.559 37.037 0.00 0.00 34.97 2.73
4900 5375 2.923035 AGTGACAGGTGGACCCCG 60.923 66.667 0.00 0.00 36.42 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.