Multiple sequence alignment - TraesCS3B01G484800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G484800 chr3B 100.000 3296 0 0 1 3296 731134437 731137732 0.000000e+00 6087.0
1 TraesCS3B01G484800 chr3B 98.901 2822 26 3 384 3205 731192875 731195691 0.000000e+00 5035.0
2 TraesCS3B01G484800 chr3B 81.953 1280 198 25 1108 2369 754621214 754622478 0.000000e+00 1053.0
3 TraesCS3B01G484800 chr3B 90.943 265 24 0 1 265 720848436 720848172 1.120000e-94 357.0
4 TraesCS3B01G484800 chr3A 91.427 1948 133 20 963 2894 688596513 688598442 0.000000e+00 2641.0
5 TraesCS3B01G484800 chr3A 81.230 1220 193 24 1108 2306 701223117 701221913 0.000000e+00 952.0
6 TraesCS3B01G484800 chr3A 86.715 557 30 11 384 907 688595668 688596213 2.210000e-161 579.0
7 TraesCS3B01G484800 chr3A 88.686 274 27 4 7 278 597182726 597182455 6.820000e-87 331.0
8 TraesCS3B01G484800 chr3A 100.000 37 0 0 911 947 688596477 688596513 5.900000e-08 69.4
9 TraesCS3B01G484800 chr3A 97.222 36 1 0 1037 1072 701223170 701223135 9.880000e-06 62.1
10 TraesCS3B01G484800 chr3D 90.041 1446 76 29 384 1808 551370516 551371914 0.000000e+00 1810.0
11 TraesCS3B01G484800 chr3D 92.612 1164 63 9 1347 2491 551400251 551399092 0.000000e+00 1652.0
12 TraesCS3B01G484800 chr3D 87.916 1142 46 28 384 1484 551428309 551427219 0.000000e+00 1260.0
13 TraesCS3B01G484800 chr3D 81.184 1334 210 28 1037 2354 566075398 566076706 0.000000e+00 1035.0
14 TraesCS3B01G484800 chr3D 92.132 699 50 3 1796 2492 551386001 551386696 0.000000e+00 981.0
15 TraesCS3B01G484800 chr3D 87.267 911 43 30 484 1350 551403689 551402808 0.000000e+00 972.0
16 TraesCS3B01G484800 chr3D 79.767 1290 224 31 1037 2317 566001354 566002615 0.000000e+00 902.0
17 TraesCS3B01G484800 chr3D 83.988 331 42 10 2628 2953 551386697 551387021 1.150000e-79 307.0
18 TraesCS3B01G484800 chr3D 84.880 291 34 9 2661 2947 551399076 551398792 5.380000e-73 285.0
19 TraesCS3B01G484800 chr3D 87.037 162 20 1 2975 3136 516859780 516859620 7.270000e-42 182.0
20 TraesCS3B01G484800 chr3D 95.588 68 3 0 384 451 551403754 551403687 3.480000e-20 110.0
21 TraesCS3B01G484800 chr3D 96.970 33 1 0 1630 1662 570559796 570559828 4.590000e-04 56.5
22 TraesCS3B01G484800 chr5A 95.307 277 13 0 1 277 669734876 669734600 1.090000e-119 440.0
23 TraesCS3B01G484800 chr5A 94.783 230 12 0 48 277 669735717 669735946 3.130000e-95 359.0
24 TraesCS3B01G484800 chr5A 92.517 147 11 0 3135 3281 463520748 463520894 9.270000e-51 211.0
25 TraesCS3B01G484800 chr2B 94.224 277 16 0 1 277 11407046 11407322 1.090000e-114 424.0
26 TraesCS3B01G484800 chr2B 95.928 221 8 1 57 277 11406195 11405976 1.120000e-94 357.0
27 TraesCS3B01G484800 chr1D 90.514 253 23 1 25 277 62694349 62694098 1.900000e-87 333.0
28 TraesCS3B01G484800 chr1D 87.636 275 30 4 7 279 410264412 410264140 1.910000e-82 316.0
29 TraesCS3B01G484800 chr1D 93.878 147 9 0 3135 3281 86097539 86097685 4.280000e-54 222.0
30 TraesCS3B01G484800 chr1D 90.625 160 13 1 3135 3294 467437114 467436957 9.270000e-51 211.0
31 TraesCS3B01G484800 chr5D 89.011 273 23 7 7 276 519219736 519220004 6.820000e-87 331.0
32 TraesCS3B01G484800 chr5D 87.952 166 18 2 2972 3136 495796218 495796054 9.330000e-46 195.0
33 TraesCS3B01G484800 chr5D 87.117 163 21 0 2974 3136 525776766 525776604 5.620000e-43 185.0
34 TraesCS3B01G484800 chr5D 92.233 103 6 1 273 375 109811318 109811418 9.530000e-31 145.0
35 TraesCS3B01G484800 chr4D 95.364 151 7 0 3134 3284 400925658 400925808 1.180000e-59 241.0
36 TraesCS3B01G484800 chr4D 93.333 150 10 0 3135 3284 294007565 294007416 4.280000e-54 222.0
37 TraesCS3B01G484800 chr4D 90.062 161 13 2 3135 3295 473143342 473143499 4.310000e-49 206.0
38 TraesCS3B01G484800 chr4D 87.342 158 18 2 2977 3133 351532997 351533153 2.610000e-41 180.0
39 TraesCS3B01G484800 chr4D 95.146 103 3 1 273 375 348302206 348302106 9.470000e-36 161.0
40 TraesCS3B01G484800 chr4D 90.179 112 10 1 264 375 14609707 14609597 9.530000e-31 145.0
41 TraesCS3B01G484800 chr2D 91.925 161 11 1 3135 3295 194804171 194804013 1.190000e-54 224.0
42 TraesCS3B01G484800 chr2D 85.976 164 19 4 2975 3136 22178706 22178545 4.370000e-39 172.0
43 TraesCS3B01G484800 chr2D 90.566 106 5 2 272 377 83966782 83966682 5.740000e-28 135.0
44 TraesCS3B01G484800 chr7D 93.333 150 10 0 3135 3284 523398189 523398040 4.280000e-54 222.0
45 TraesCS3B01G484800 chr7D 94.444 108 5 1 269 375 101395310 101395203 7.320000e-37 165.0
46 TraesCS3B01G484800 chr7D 87.931 116 11 1 262 377 506679544 506679432 2.060000e-27 134.0
47 TraesCS3B01G484800 chr4B 91.391 151 13 0 3134 3284 588748392 588748542 1.200000e-49 207.0
48 TraesCS3B01G484800 chr4B 89.506 162 17 0 2974 3135 579446686 579446525 4.310000e-49 206.0
49 TraesCS3B01G484800 chr6D 87.059 170 17 4 2976 3143 24021705 24021539 1.560000e-43 187.0
50 TraesCS3B01G484800 chr6D 93.860 114 5 2 270 381 50742374 50742261 1.570000e-38 171.0
51 TraesCS3B01G484800 chr1B 85.802 162 23 0 2975 3136 646188985 646188824 4.370000e-39 172.0
52 TraesCS3B01G484800 chr1B 92.381 105 7 1 273 377 575927736 575927839 7.370000e-32 148.0
53 TraesCS3B01G484800 chr7A 89.189 111 10 2 265 375 663591598 663591490 1.600000e-28 137.0
54 TraesCS3B01G484800 chr7B 96.875 32 1 0 2627 2658 139100541 139100510 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G484800 chr3B 731134437 731137732 3295 False 6087.000000 6087 100.00000 1 3296 1 chr3B.!!$F1 3295
1 TraesCS3B01G484800 chr3B 731192875 731195691 2816 False 5035.000000 5035 98.90100 384 3205 1 chr3B.!!$F2 2821
2 TraesCS3B01G484800 chr3B 754621214 754622478 1264 False 1053.000000 1053 81.95300 1108 2369 1 chr3B.!!$F3 1261
3 TraesCS3B01G484800 chr3A 688595668 688598442 2774 False 1096.466667 2641 92.71400 384 2894 3 chr3A.!!$F1 2510
4 TraesCS3B01G484800 chr3A 701221913 701223170 1257 True 507.050000 952 89.22600 1037 2306 2 chr3A.!!$R2 1269
5 TraesCS3B01G484800 chr3D 551370516 551371914 1398 False 1810.000000 1810 90.04100 384 1808 1 chr3D.!!$F1 1424
6 TraesCS3B01G484800 chr3D 551427219 551428309 1090 True 1260.000000 1260 87.91600 384 1484 1 chr3D.!!$R2 1100
7 TraesCS3B01G484800 chr3D 566075398 566076706 1308 False 1035.000000 1035 81.18400 1037 2354 1 chr3D.!!$F3 1317
8 TraesCS3B01G484800 chr3D 566001354 566002615 1261 False 902.000000 902 79.76700 1037 2317 1 chr3D.!!$F2 1280
9 TraesCS3B01G484800 chr3D 551398792 551403754 4962 True 754.750000 1652 90.08675 384 2947 4 chr3D.!!$R3 2563
10 TraesCS3B01G484800 chr3D 551386001 551387021 1020 False 644.000000 981 88.06000 1796 2953 2 chr3D.!!$F5 1157

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.324645 AAGAATGATGTGTGGGCCCC 60.325 55.0 22.27 11.72 0.0 5.80 F
132 133 0.796312 CGCACGTCATAAGCAGGTTT 59.204 50.0 0.00 0.00 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 4619 1.612442 AGGGTTCTTGCGGAGGCTA 60.612 57.895 0.0 0.0 40.82 3.93 R
2573 5533 2.154567 TTGACGCCCTGGTAGACTAT 57.845 50.000 0.0 0.0 0.00 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.859165 TGTGCCGGAAGAAGAAGAAT 57.141 45.000 5.05 0.00 0.00 2.40
20 21 2.426522 TGTGCCGGAAGAAGAAGAATG 58.573 47.619 5.05 0.00 0.00 2.67
21 22 2.038426 TGTGCCGGAAGAAGAAGAATGA 59.962 45.455 5.05 0.00 0.00 2.57
22 23 3.274288 GTGCCGGAAGAAGAAGAATGAT 58.726 45.455 5.05 0.00 0.00 2.45
23 24 3.064545 GTGCCGGAAGAAGAAGAATGATG 59.935 47.826 5.05 0.00 0.00 3.07
24 25 3.274288 GCCGGAAGAAGAAGAATGATGT 58.726 45.455 5.05 0.00 0.00 3.06
25 26 3.064545 GCCGGAAGAAGAAGAATGATGTG 59.935 47.826 5.05 0.00 0.00 3.21
26 27 4.256920 CCGGAAGAAGAAGAATGATGTGT 58.743 43.478 0.00 0.00 0.00 3.72
27 28 4.093998 CCGGAAGAAGAAGAATGATGTGTG 59.906 45.833 0.00 0.00 0.00 3.82
28 29 4.093998 CGGAAGAAGAAGAATGATGTGTGG 59.906 45.833 0.00 0.00 0.00 4.17
29 30 4.397417 GGAAGAAGAAGAATGATGTGTGGG 59.603 45.833 0.00 0.00 0.00 4.61
30 31 3.350833 AGAAGAAGAATGATGTGTGGGC 58.649 45.455 0.00 0.00 0.00 5.36
31 32 2.134789 AGAAGAATGATGTGTGGGCC 57.865 50.000 0.00 0.00 0.00 5.80
32 33 1.106285 GAAGAATGATGTGTGGGCCC 58.894 55.000 17.59 17.59 0.00 5.80
33 34 0.324645 AAGAATGATGTGTGGGCCCC 60.325 55.000 22.27 11.72 0.00 5.80
34 35 2.044053 AATGATGTGTGGGCCCCG 60.044 61.111 22.27 0.00 0.00 5.73
35 36 2.837031 GAATGATGTGTGGGCCCCGT 62.837 60.000 22.27 4.84 0.00 5.28
36 37 2.837031 AATGATGTGTGGGCCCCGTC 62.837 60.000 22.27 15.47 0.00 4.79
42 43 4.090588 GTGGGCCCCGTCGATGAA 62.091 66.667 22.27 0.00 0.00 2.57
43 44 3.323286 TGGGCCCCGTCGATGAAA 61.323 61.111 22.27 0.00 0.00 2.69
44 45 2.045731 GGGCCCCGTCGATGAAAA 60.046 61.111 12.23 0.00 0.00 2.29
45 46 2.404186 GGGCCCCGTCGATGAAAAC 61.404 63.158 12.23 0.00 0.00 2.43
46 47 2.746803 GGCCCCGTCGATGAAAACG 61.747 63.158 6.11 0.00 38.58 3.60
53 54 2.757896 CGTCGATGAAAACGGTCAATG 58.242 47.619 0.00 0.00 35.32 2.82
54 55 2.156891 CGTCGATGAAAACGGTCAATGT 59.843 45.455 0.00 0.00 35.32 2.71
55 56 3.365520 CGTCGATGAAAACGGTCAATGTA 59.634 43.478 0.00 0.00 35.32 2.29
56 57 4.143284 CGTCGATGAAAACGGTCAATGTAA 60.143 41.667 0.00 0.00 35.32 2.41
57 58 5.077424 GTCGATGAAAACGGTCAATGTAAC 58.923 41.667 0.00 0.00 30.83 2.50
58 59 4.079028 CGATGAAAACGGTCAATGTAACG 58.921 43.478 0.00 0.00 0.00 3.18
59 60 3.881780 TGAAAACGGTCAATGTAACGG 57.118 42.857 0.00 0.00 0.00 4.44
60 61 3.204526 TGAAAACGGTCAATGTAACGGT 58.795 40.909 0.00 0.00 0.00 4.83
61 62 3.248125 TGAAAACGGTCAATGTAACGGTC 59.752 43.478 0.00 0.00 30.82 4.79
62 63 2.529780 AACGGTCAATGTAACGGTCA 57.470 45.000 0.00 0.00 30.82 4.02
63 64 2.529780 ACGGTCAATGTAACGGTCAA 57.470 45.000 0.00 0.00 0.00 3.18
64 65 2.836262 ACGGTCAATGTAACGGTCAAA 58.164 42.857 0.00 0.00 0.00 2.69
65 66 3.204526 ACGGTCAATGTAACGGTCAAAA 58.795 40.909 0.00 0.00 0.00 2.44
66 67 3.816523 ACGGTCAATGTAACGGTCAAAAT 59.183 39.130 0.00 0.00 0.00 1.82
67 68 4.996122 ACGGTCAATGTAACGGTCAAAATA 59.004 37.500 0.00 0.00 0.00 1.40
68 69 5.469421 ACGGTCAATGTAACGGTCAAAATAA 59.531 36.000 0.00 0.00 0.00 1.40
69 70 6.017275 ACGGTCAATGTAACGGTCAAAATAAA 60.017 34.615 0.00 0.00 0.00 1.40
70 71 6.303733 CGGTCAATGTAACGGTCAAAATAAAC 59.696 38.462 0.00 0.00 0.00 2.01
71 72 6.303733 GGTCAATGTAACGGTCAAAATAAACG 59.696 38.462 0.00 0.00 0.00 3.60
72 73 6.303733 GTCAATGTAACGGTCAAAATAAACGG 59.696 38.462 0.00 0.00 0.00 4.44
73 74 6.204301 TCAATGTAACGGTCAAAATAAACGGA 59.796 34.615 0.00 0.00 0.00 4.69
74 75 5.594724 TGTAACGGTCAAAATAAACGGAG 57.405 39.130 0.00 0.00 0.00 4.63
89 90 1.515081 CGGAGTTAACTTTTCCGCCA 58.485 50.000 18.36 0.00 46.10 5.69
90 91 1.196127 CGGAGTTAACTTTTCCGCCAC 59.804 52.381 18.36 0.16 46.10 5.01
91 92 1.196127 GGAGTTAACTTTTCCGCCACG 59.804 52.381 10.02 0.00 0.00 4.94
92 93 1.869132 GAGTTAACTTTTCCGCCACGT 59.131 47.619 10.02 0.00 0.00 4.49
93 94 1.869132 AGTTAACTTTTCCGCCACGTC 59.131 47.619 1.12 0.00 0.00 4.34
94 95 1.598601 GTTAACTTTTCCGCCACGTCA 59.401 47.619 0.00 0.00 0.00 4.35
95 96 1.504359 TAACTTTTCCGCCACGTCAG 58.496 50.000 0.00 0.00 0.00 3.51
96 97 1.782028 AACTTTTCCGCCACGTCAGC 61.782 55.000 0.00 0.00 0.00 4.26
97 98 1.961277 CTTTTCCGCCACGTCAGCT 60.961 57.895 5.62 0.00 0.00 4.24
98 99 1.901650 CTTTTCCGCCACGTCAGCTC 61.902 60.000 5.62 0.00 0.00 4.09
99 100 2.377628 TTTTCCGCCACGTCAGCTCT 62.378 55.000 5.62 0.00 0.00 4.09
100 101 3.573772 TTCCGCCACGTCAGCTCTG 62.574 63.158 5.62 0.00 0.00 3.35
101 102 4.363990 CCGCCACGTCAGCTCTGT 62.364 66.667 5.62 0.00 0.00 3.41
102 103 2.807045 CGCCACGTCAGCTCTGTC 60.807 66.667 5.62 0.00 0.00 3.51
103 104 2.340078 GCCACGTCAGCTCTGTCA 59.660 61.111 0.00 0.00 0.00 3.58
104 105 2.024319 GCCACGTCAGCTCTGTCAC 61.024 63.158 0.00 0.00 0.00 3.67
105 106 1.363807 CCACGTCAGCTCTGTCACA 59.636 57.895 0.00 0.00 0.00 3.58
106 107 0.941463 CCACGTCAGCTCTGTCACAC 60.941 60.000 0.00 0.00 0.00 3.82
107 108 1.008424 ACGTCAGCTCTGTCACACG 60.008 57.895 7.13 7.13 34.58 4.49
108 109 1.730902 CGTCAGCTCTGTCACACGG 60.731 63.158 0.00 0.00 0.00 4.94
109 110 1.373497 GTCAGCTCTGTCACACGGG 60.373 63.158 0.00 0.00 0.00 5.28
110 111 1.832608 TCAGCTCTGTCACACGGGT 60.833 57.895 0.00 0.00 0.00 5.28
111 112 1.373497 CAGCTCTGTCACACGGGTC 60.373 63.158 0.00 0.00 0.00 4.46
112 113 2.048127 GCTCTGTCACACGGGTCC 60.048 66.667 0.00 0.00 0.00 4.46
113 114 2.657237 CTCTGTCACACGGGTCCC 59.343 66.667 0.00 0.00 0.00 4.46
123 124 3.829044 CGGGTCCCGCACGTCATA 61.829 66.667 19.48 0.00 41.17 2.15
124 125 2.580276 GGGTCCCGCACGTCATAA 59.420 61.111 0.00 0.00 0.00 1.90
125 126 1.520787 GGGTCCCGCACGTCATAAG 60.521 63.158 0.00 0.00 0.00 1.73
126 127 2.171725 GGTCCCGCACGTCATAAGC 61.172 63.158 0.00 0.00 0.00 3.09
127 128 1.447140 GTCCCGCACGTCATAAGCA 60.447 57.895 0.00 0.00 0.00 3.91
128 129 1.153647 TCCCGCACGTCATAAGCAG 60.154 57.895 0.00 0.00 0.00 4.24
129 130 2.173669 CCCGCACGTCATAAGCAGG 61.174 63.158 0.00 0.00 0.00 4.85
130 131 1.447838 CCGCACGTCATAAGCAGGT 60.448 57.895 0.00 0.00 0.00 4.00
131 132 1.019278 CCGCACGTCATAAGCAGGTT 61.019 55.000 0.00 0.00 0.00 3.50
132 133 0.796312 CGCACGTCATAAGCAGGTTT 59.204 50.000 0.00 0.00 0.00 3.27
133 134 1.996898 CGCACGTCATAAGCAGGTTTA 59.003 47.619 0.00 0.00 0.00 2.01
134 135 2.413796 CGCACGTCATAAGCAGGTTTAA 59.586 45.455 0.00 0.00 0.00 1.52
135 136 3.120477 CGCACGTCATAAGCAGGTTTAAA 60.120 43.478 0.00 0.00 0.00 1.52
136 137 4.611807 CGCACGTCATAAGCAGGTTTAAAA 60.612 41.667 0.00 0.00 0.00 1.52
137 138 5.399013 GCACGTCATAAGCAGGTTTAAAAT 58.601 37.500 0.00 0.00 0.00 1.82
138 139 5.511729 GCACGTCATAAGCAGGTTTAAAATC 59.488 40.000 0.00 0.00 0.00 2.17
139 140 6.607689 CACGTCATAAGCAGGTTTAAAATCA 58.392 36.000 0.00 0.00 0.00 2.57
140 141 7.250569 CACGTCATAAGCAGGTTTAAAATCAT 58.749 34.615 0.00 0.00 0.00 2.45
141 142 8.394877 CACGTCATAAGCAGGTTTAAAATCATA 58.605 33.333 0.00 0.00 0.00 2.15
142 143 8.952278 ACGTCATAAGCAGGTTTAAAATCATAA 58.048 29.630 0.00 0.00 0.00 1.90
143 144 9.781834 CGTCATAAGCAGGTTTAAAATCATAAA 57.218 29.630 0.00 0.00 0.00 1.40
149 150 9.791801 AAGCAGGTTTAAAATCATAAAAATGGT 57.208 25.926 0.00 0.00 30.67 3.55
150 151 9.435688 AGCAGGTTTAAAATCATAAAAATGGTC 57.564 29.630 0.00 0.00 0.00 4.02
151 152 9.213799 GCAGGTTTAAAATCATAAAAATGGTCA 57.786 29.630 0.00 0.00 0.00 4.02
161 162 9.643693 AATCATAAAAATGGTCATCAACTCAAC 57.356 29.630 0.00 0.00 0.00 3.18
162 163 8.408043 TCATAAAAATGGTCATCAACTCAACT 57.592 30.769 0.00 0.00 0.00 3.16
163 164 8.859090 TCATAAAAATGGTCATCAACTCAACTT 58.141 29.630 0.00 0.00 0.00 2.66
164 165 8.918658 CATAAAAATGGTCATCAACTCAACTTG 58.081 33.333 0.00 0.00 0.00 3.16
165 166 5.458041 AAATGGTCATCAACTCAACTTGG 57.542 39.130 0.00 0.00 0.00 3.61
166 167 3.576078 TGGTCATCAACTCAACTTGGT 57.424 42.857 0.00 0.00 0.00 3.67
167 168 4.698201 TGGTCATCAACTCAACTTGGTA 57.302 40.909 0.00 0.00 0.00 3.25
168 169 4.641396 TGGTCATCAACTCAACTTGGTAG 58.359 43.478 0.00 0.00 0.00 3.18
169 170 4.102524 TGGTCATCAACTCAACTTGGTAGT 59.897 41.667 0.00 0.00 35.68 2.73
170 171 5.063880 GGTCATCAACTCAACTTGGTAGTT 58.936 41.667 0.00 0.00 45.40 2.24
171 172 5.531287 GGTCATCAACTCAACTTGGTAGTTT 59.469 40.000 0.00 0.00 41.85 2.66
172 173 6.039382 GGTCATCAACTCAACTTGGTAGTTTT 59.961 38.462 0.00 0.00 41.85 2.43
173 174 7.416326 GGTCATCAACTCAACTTGGTAGTTTTT 60.416 37.037 0.00 0.00 41.85 1.94
200 201 9.653287 TGTCACAAAATTAGTACTAATCTGGAG 57.347 33.333 24.80 19.60 34.90 3.86
201 202 9.654663 GTCACAAAATTAGTACTAATCTGGAGT 57.345 33.333 24.80 16.66 34.90 3.85
207 208 8.943909 AATTAGTACTAATCTGGAGTTTTCGG 57.056 34.615 24.80 0.00 34.90 4.30
208 209 5.997384 AGTACTAATCTGGAGTTTTCGGT 57.003 39.130 0.00 0.00 0.00 4.69
209 210 5.963594 AGTACTAATCTGGAGTTTTCGGTC 58.036 41.667 0.00 0.00 0.00 4.79
210 211 4.884668 ACTAATCTGGAGTTTTCGGTCA 57.115 40.909 0.00 0.00 0.00 4.02
211 212 4.566987 ACTAATCTGGAGTTTTCGGTCAC 58.433 43.478 0.00 0.00 0.00 3.67
212 213 3.771577 AATCTGGAGTTTTCGGTCACT 57.228 42.857 0.00 0.00 0.00 3.41
213 214 3.771577 ATCTGGAGTTTTCGGTCACTT 57.228 42.857 0.00 0.00 0.00 3.16
214 215 3.553828 TCTGGAGTTTTCGGTCACTTT 57.446 42.857 0.00 0.00 0.00 2.66
215 216 3.881220 TCTGGAGTTTTCGGTCACTTTT 58.119 40.909 0.00 0.00 0.00 2.27
216 217 3.875134 TCTGGAGTTTTCGGTCACTTTTC 59.125 43.478 0.00 0.00 0.00 2.29
217 218 3.611970 TGGAGTTTTCGGTCACTTTTCA 58.388 40.909 0.00 0.00 0.00 2.69
218 219 4.011023 TGGAGTTTTCGGTCACTTTTCAA 58.989 39.130 0.00 0.00 0.00 2.69
219 220 4.459685 TGGAGTTTTCGGTCACTTTTCAAA 59.540 37.500 0.00 0.00 0.00 2.69
220 221 5.047943 TGGAGTTTTCGGTCACTTTTCAAAA 60.048 36.000 0.00 0.00 0.00 2.44
221 222 6.040247 GGAGTTTTCGGTCACTTTTCAAAAT 58.960 36.000 0.00 0.00 0.00 1.82
222 223 6.019881 GGAGTTTTCGGTCACTTTTCAAAATG 60.020 38.462 0.00 0.00 0.00 2.32
223 224 6.394809 AGTTTTCGGTCACTTTTCAAAATGT 58.605 32.000 0.00 0.00 0.00 2.71
224 225 6.310224 AGTTTTCGGTCACTTTTCAAAATGTG 59.690 34.615 12.75 12.75 42.25 3.21
225 226 4.300189 TCGGTCACTTTTCAAAATGTGG 57.700 40.909 16.73 6.05 41.62 4.17
226 227 3.697045 TCGGTCACTTTTCAAAATGTGGT 59.303 39.130 16.73 0.00 41.62 4.16
227 228 4.882427 TCGGTCACTTTTCAAAATGTGGTA 59.118 37.500 16.73 1.98 41.62 3.25
228 229 5.008217 TCGGTCACTTTTCAAAATGTGGTAG 59.992 40.000 16.73 10.62 41.62 3.18
229 230 5.220970 CGGTCACTTTTCAAAATGTGGTAGT 60.221 40.000 16.73 0.00 41.62 2.73
230 231 6.569780 GGTCACTTTTCAAAATGTGGTAGTT 58.430 36.000 16.73 0.00 41.62 2.24
231 232 6.695713 GGTCACTTTTCAAAATGTGGTAGTTC 59.304 38.462 16.73 5.90 41.62 3.01
232 233 7.416326 GGTCACTTTTCAAAATGTGGTAGTTCT 60.416 37.037 16.73 0.00 41.62 3.01
233 234 7.432252 GTCACTTTTCAAAATGTGGTAGTTCTG 59.568 37.037 16.73 0.00 41.62 3.02
234 235 7.122055 TCACTTTTCAAAATGTGGTAGTTCTGT 59.878 33.333 16.73 0.00 41.62 3.41
235 236 7.220683 CACTTTTCAAAATGTGGTAGTTCTGTG 59.779 37.037 11.62 0.00 39.20 3.66
236 237 5.766150 TTCAAAATGTGGTAGTTCTGTGG 57.234 39.130 0.00 0.00 0.00 4.17
237 238 4.141287 TCAAAATGTGGTAGTTCTGTGGG 58.859 43.478 0.00 0.00 0.00 4.61
238 239 4.141287 CAAAATGTGGTAGTTCTGTGGGA 58.859 43.478 0.00 0.00 0.00 4.37
239 240 3.418684 AATGTGGTAGTTCTGTGGGAC 57.581 47.619 0.00 0.00 0.00 4.46
240 241 1.796017 TGTGGTAGTTCTGTGGGACA 58.204 50.000 0.00 0.00 0.00 4.02
241 242 2.120312 TGTGGTAGTTCTGTGGGACAA 58.880 47.619 0.00 0.00 44.16 3.18
242 243 2.708861 TGTGGTAGTTCTGTGGGACAAT 59.291 45.455 0.00 0.00 44.16 2.71
243 244 3.074412 GTGGTAGTTCTGTGGGACAATG 58.926 50.000 0.00 0.00 44.16 2.82
244 245 2.976185 TGGTAGTTCTGTGGGACAATGA 59.024 45.455 0.00 0.00 44.16 2.57
245 246 3.244422 TGGTAGTTCTGTGGGACAATGAC 60.244 47.826 0.00 0.00 44.16 3.06
246 247 3.244422 GGTAGTTCTGTGGGACAATGACA 60.244 47.826 0.00 0.00 44.16 3.58
247 248 3.795688 AGTTCTGTGGGACAATGACAT 57.204 42.857 0.00 0.00 44.16 3.06
248 249 3.415212 AGTTCTGTGGGACAATGACATG 58.585 45.455 0.00 0.00 44.16 3.21
249 250 3.072915 AGTTCTGTGGGACAATGACATGA 59.927 43.478 0.00 0.00 44.16 3.07
250 251 3.786368 TCTGTGGGACAATGACATGAA 57.214 42.857 0.00 0.00 44.16 2.57
251 252 4.097551 TCTGTGGGACAATGACATGAAA 57.902 40.909 0.00 0.00 44.16 2.69
252 253 4.665451 TCTGTGGGACAATGACATGAAAT 58.335 39.130 0.00 0.00 44.16 2.17
283 284 4.695217 TTTTGTCAAATACTCCATCCGC 57.305 40.909 0.00 0.00 0.00 5.54
284 285 3.342377 TTGTCAAATACTCCATCCGCA 57.658 42.857 0.00 0.00 0.00 5.69
285 286 3.342377 TGTCAAATACTCCATCCGCAA 57.658 42.857 0.00 0.00 0.00 4.85
286 287 3.680490 TGTCAAATACTCCATCCGCAAA 58.320 40.909 0.00 0.00 0.00 3.68
287 288 3.689161 TGTCAAATACTCCATCCGCAAAG 59.311 43.478 0.00 0.00 0.00 2.77
288 289 3.938963 GTCAAATACTCCATCCGCAAAGA 59.061 43.478 0.00 0.00 0.00 2.52
289 290 4.394920 GTCAAATACTCCATCCGCAAAGAA 59.605 41.667 0.00 0.00 0.00 2.52
290 291 5.007034 TCAAATACTCCATCCGCAAAGAAA 58.993 37.500 0.00 0.00 0.00 2.52
291 292 5.652014 TCAAATACTCCATCCGCAAAGAAAT 59.348 36.000 0.00 0.00 0.00 2.17
292 293 6.826231 TCAAATACTCCATCCGCAAAGAAATA 59.174 34.615 0.00 0.00 0.00 1.40
293 294 7.502226 TCAAATACTCCATCCGCAAAGAAATAT 59.498 33.333 0.00 0.00 0.00 1.28
294 295 8.783093 CAAATACTCCATCCGCAAAGAAATATA 58.217 33.333 0.00 0.00 0.00 0.86
295 296 8.918202 AATACTCCATCCGCAAAGAAATATAA 57.082 30.769 0.00 0.00 0.00 0.98
296 297 6.867662 ACTCCATCCGCAAAGAAATATAAG 57.132 37.500 0.00 0.00 0.00 1.73
297 298 6.591935 ACTCCATCCGCAAAGAAATATAAGA 58.408 36.000 0.00 0.00 0.00 2.10
298 299 6.708054 ACTCCATCCGCAAAGAAATATAAGAG 59.292 38.462 0.00 0.00 0.00 2.85
299 300 5.470098 TCCATCCGCAAAGAAATATAAGAGC 59.530 40.000 0.00 0.00 0.00 4.09
300 301 5.377358 CATCCGCAAAGAAATATAAGAGCG 58.623 41.667 0.00 0.00 43.13 5.03
301 302 4.439057 TCCGCAAAGAAATATAAGAGCGT 58.561 39.130 0.00 0.00 42.08 5.07
302 303 4.873827 TCCGCAAAGAAATATAAGAGCGTT 59.126 37.500 0.00 0.00 42.08 4.84
303 304 5.353123 TCCGCAAAGAAATATAAGAGCGTTT 59.647 36.000 0.00 0.00 42.08 3.60
304 305 6.535865 TCCGCAAAGAAATATAAGAGCGTTTA 59.464 34.615 0.00 0.00 42.08 2.01
305 306 6.846283 CCGCAAAGAAATATAAGAGCGTTTAG 59.154 38.462 0.00 0.00 42.08 1.85
306 307 7.254319 CCGCAAAGAAATATAAGAGCGTTTAGA 60.254 37.037 0.00 0.00 42.08 2.10
307 308 8.276325 CGCAAAGAAATATAAGAGCGTTTAGAT 58.724 33.333 0.00 0.00 39.18 1.98
308 309 9.587461 GCAAAGAAATATAAGAGCGTTTAGATC 57.413 33.333 0.00 0.00 35.01 2.75
317 318 4.927422 AGAGCGTTTAGATCACTAAGAGC 58.073 43.478 0.00 0.00 39.36 4.09
318 319 3.696898 AGCGTTTAGATCACTAAGAGCG 58.303 45.455 0.00 0.00 42.12 5.03
319 320 3.128938 AGCGTTTAGATCACTAAGAGCGT 59.871 43.478 0.00 0.00 42.12 5.07
320 321 3.858238 GCGTTTAGATCACTAAGAGCGTT 59.142 43.478 0.00 0.00 39.36 4.84
321 322 4.326548 GCGTTTAGATCACTAAGAGCGTTT 59.673 41.667 0.00 0.00 39.36 3.60
322 323 5.514204 GCGTTTAGATCACTAAGAGCGTTTA 59.486 40.000 0.00 0.00 39.36 2.01
323 324 6.291164 GCGTTTAGATCACTAAGAGCGTTTAG 60.291 42.308 0.00 8.23 39.36 1.85
324 325 6.965500 CGTTTAGATCACTAAGAGCGTTTAGA 59.035 38.462 14.60 0.00 39.36 2.10
325 326 7.644551 CGTTTAGATCACTAAGAGCGTTTAGAT 59.355 37.037 14.60 2.39 39.36 1.98
326 327 8.960075 GTTTAGATCACTAAGAGCGTTTAGATC 58.040 37.037 14.60 9.44 39.36 2.75
327 328 6.701145 AGATCACTAAGAGCGTTTAGATCA 57.299 37.500 14.60 2.03 37.82 2.92
328 329 6.500041 AGATCACTAAGAGCGTTTAGATCAC 58.500 40.000 14.60 6.04 37.82 3.06
329 330 5.899120 TCACTAAGAGCGTTTAGATCACT 57.101 39.130 14.60 0.00 37.82 3.41
330 331 6.997239 TCACTAAGAGCGTTTAGATCACTA 57.003 37.500 14.60 0.00 37.82 2.74
331 332 7.387119 TCACTAAGAGCGTTTAGATCACTAA 57.613 36.000 14.60 0.00 37.82 2.24
332 333 7.823665 TCACTAAGAGCGTTTAGATCACTAAA 58.176 34.615 14.60 0.00 43.52 1.85
333 334 7.968956 TCACTAAGAGCGTTTAGATCACTAAAG 59.031 37.037 14.60 0.00 45.42 1.85
334 335 7.755822 CACTAAGAGCGTTTAGATCACTAAAGT 59.244 37.037 14.60 0.00 45.42 2.66
335 336 8.954350 ACTAAGAGCGTTTAGATCACTAAAGTA 58.046 33.333 14.60 0.00 45.42 2.24
336 337 9.440784 CTAAGAGCGTTTAGATCACTAAAGTAG 57.559 37.037 0.00 0.00 45.42 2.57
337 338 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
351 352 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
352 353 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
353 354 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
354 355 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
369 370 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
370 371 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
371 372 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
372 373 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
373 374 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
378 379 5.640189 TTTCTTTACAGAGGGAGTACTCG 57.360 43.478 16.56 5.07 42.31 4.18
379 380 4.564782 TCTTTACAGAGGGAGTACTCGA 57.435 45.455 16.56 1.56 42.31 4.04
380 381 5.113446 TCTTTACAGAGGGAGTACTCGAT 57.887 43.478 16.56 7.46 42.31 3.59
381 382 5.507637 TCTTTACAGAGGGAGTACTCGATT 58.492 41.667 16.56 4.56 42.31 3.34
382 383 6.656902 TCTTTACAGAGGGAGTACTCGATTA 58.343 40.000 16.56 0.00 42.31 1.75
453 454 4.253685 GGATGAAGATCCAACGACAGAAA 58.746 43.478 0.00 0.00 46.93 2.52
454 455 4.695455 GGATGAAGATCCAACGACAGAAAA 59.305 41.667 0.00 0.00 46.93 2.29
455 456 5.181245 GGATGAAGATCCAACGACAGAAAAA 59.819 40.000 0.00 0.00 46.93 1.94
2685 5646 1.716503 ACAAGGGGCCTAACAAGGATT 59.283 47.619 0.84 0.00 0.00 3.01
2900 5865 3.000041 CGCAAAGTCACTAATGCTGGTA 59.000 45.455 12.34 0.00 36.67 3.25
2929 5894 6.546428 TTTTAAAGAATTGGGGACACAACA 57.454 33.333 0.00 0.00 42.67 3.33
2977 5942 3.694072 CAGTCTCCTCTCAGTGACTTAGG 59.306 52.174 5.42 5.42 37.64 2.69
3139 6104 0.366871 CGGCAGTTTCTCGTGATTCG 59.633 55.000 0.00 0.00 41.41 3.34
3151 6116 3.538591 TCGTGATTCGAGGTAAGCTCTA 58.461 45.455 0.00 0.00 44.01 2.43
3191 6156 2.213499 GATGCTACGGTTCCATTCAGG 58.787 52.381 0.00 0.00 39.47 3.86
3205 6170 2.004583 TTCAGGCGATCGGTTTGTAG 57.995 50.000 18.30 0.00 0.00 2.74
3206 6171 0.459585 TCAGGCGATCGGTTTGTAGC 60.460 55.000 18.30 0.00 0.00 3.58
3207 6172 0.460284 CAGGCGATCGGTTTGTAGCT 60.460 55.000 18.30 0.00 0.00 3.32
3208 6173 0.249398 AGGCGATCGGTTTGTAGCTT 59.751 50.000 18.30 0.00 0.00 3.74
3209 6174 1.084289 GGCGATCGGTTTGTAGCTTT 58.916 50.000 18.30 0.00 0.00 3.51
3210 6175 1.202031 GGCGATCGGTTTGTAGCTTTG 60.202 52.381 18.30 0.00 0.00 2.77
3211 6176 1.463444 GCGATCGGTTTGTAGCTTTGT 59.537 47.619 18.30 0.00 0.00 2.83
3212 6177 2.474032 GCGATCGGTTTGTAGCTTTGTC 60.474 50.000 18.30 0.00 0.00 3.18
3213 6178 2.222508 CGATCGGTTTGTAGCTTTGTCG 60.223 50.000 7.38 0.00 0.00 4.35
3214 6179 2.512485 TCGGTTTGTAGCTTTGTCGA 57.488 45.000 0.00 0.00 0.00 4.20
3215 6180 2.129607 TCGGTTTGTAGCTTTGTCGAC 58.870 47.619 9.11 9.11 0.00 4.20
3216 6181 1.193874 CGGTTTGTAGCTTTGTCGACC 59.806 52.381 14.12 0.00 0.00 4.79
3217 6182 1.193874 GGTTTGTAGCTTTGTCGACCG 59.806 52.381 14.12 2.56 0.00 4.79
3218 6183 1.862827 GTTTGTAGCTTTGTCGACCGT 59.137 47.619 14.12 0.00 0.00 4.83
3219 6184 3.052036 GTTTGTAGCTTTGTCGACCGTA 58.948 45.455 14.12 0.00 0.00 4.02
3220 6185 3.581024 TTGTAGCTTTGTCGACCGTAT 57.419 42.857 14.12 0.00 0.00 3.06
3221 6186 4.700268 TTGTAGCTTTGTCGACCGTATA 57.300 40.909 14.12 0.00 0.00 1.47
3222 6187 4.906065 TGTAGCTTTGTCGACCGTATAT 57.094 40.909 14.12 0.00 0.00 0.86
3223 6188 4.603985 TGTAGCTTTGTCGACCGTATATG 58.396 43.478 14.12 0.00 0.00 1.78
3224 6189 2.470821 AGCTTTGTCGACCGTATATGC 58.529 47.619 14.12 7.75 0.00 3.14
3225 6190 2.100916 AGCTTTGTCGACCGTATATGCT 59.899 45.455 14.12 9.85 0.00 3.79
3226 6191 2.471743 GCTTTGTCGACCGTATATGCTC 59.528 50.000 14.12 0.00 0.00 4.26
3227 6192 3.702330 CTTTGTCGACCGTATATGCTCA 58.298 45.455 14.12 0.00 0.00 4.26
3228 6193 3.786516 TTGTCGACCGTATATGCTCAA 57.213 42.857 14.12 0.00 0.00 3.02
3229 6194 4.316205 TTGTCGACCGTATATGCTCAAT 57.684 40.909 14.12 0.00 0.00 2.57
3230 6195 4.316205 TGTCGACCGTATATGCTCAATT 57.684 40.909 14.12 0.00 0.00 2.32
3231 6196 4.689071 TGTCGACCGTATATGCTCAATTT 58.311 39.130 14.12 0.00 0.00 1.82
3232 6197 4.743151 TGTCGACCGTATATGCTCAATTTC 59.257 41.667 14.12 0.00 0.00 2.17
3233 6198 4.982916 GTCGACCGTATATGCTCAATTTCT 59.017 41.667 3.51 0.00 0.00 2.52
3234 6199 5.462398 GTCGACCGTATATGCTCAATTTCTT 59.538 40.000 3.51 0.00 0.00 2.52
3235 6200 5.462068 TCGACCGTATATGCTCAATTTCTTG 59.538 40.000 0.00 0.00 0.00 3.02
3236 6201 5.234329 CGACCGTATATGCTCAATTTCTTGT 59.766 40.000 0.00 0.00 33.87 3.16
3237 6202 6.238103 CGACCGTATATGCTCAATTTCTTGTT 60.238 38.462 0.00 0.00 33.87 2.83
3238 6203 7.016361 ACCGTATATGCTCAATTTCTTGTTC 57.984 36.000 0.00 0.00 33.87 3.18
3239 6204 6.038271 ACCGTATATGCTCAATTTCTTGTTCC 59.962 38.462 0.00 0.00 33.87 3.62
3240 6205 6.430451 CGTATATGCTCAATTTCTTGTTCCC 58.570 40.000 0.00 0.00 33.87 3.97
3241 6206 3.855689 ATGCTCAATTTCTTGTTCCCG 57.144 42.857 0.00 0.00 33.87 5.14
3242 6207 2.582052 TGCTCAATTTCTTGTTCCCGT 58.418 42.857 0.00 0.00 33.87 5.28
3243 6208 2.955660 TGCTCAATTTCTTGTTCCCGTT 59.044 40.909 0.00 0.00 33.87 4.44
3244 6209 3.383185 TGCTCAATTTCTTGTTCCCGTTT 59.617 39.130 0.00 0.00 33.87 3.60
3245 6210 3.735746 GCTCAATTTCTTGTTCCCGTTTG 59.264 43.478 0.00 0.00 33.87 2.93
3246 6211 4.298332 CTCAATTTCTTGTTCCCGTTTGG 58.702 43.478 0.00 0.00 33.87 3.28
3247 6212 3.954904 TCAATTTCTTGTTCCCGTTTGGA 59.045 39.130 0.00 0.00 43.18 3.53
3257 6222 1.751924 TCCCGTTTGGAACTGTTTTGG 59.248 47.619 0.00 0.00 41.40 3.28
3258 6223 1.751924 CCCGTTTGGAACTGTTTTGGA 59.248 47.619 0.00 0.00 37.49 3.53
3259 6224 2.480587 CCCGTTTGGAACTGTTTTGGAC 60.481 50.000 0.00 0.00 37.49 4.02
3260 6225 2.446282 CGTTTGGAACTGTTTTGGACG 58.554 47.619 0.00 0.76 0.00 4.79
3261 6226 2.096174 CGTTTGGAACTGTTTTGGACGA 59.904 45.455 12.05 0.00 0.00 4.20
3262 6227 3.426426 CGTTTGGAACTGTTTTGGACGAA 60.426 43.478 12.05 0.00 0.00 3.85
3263 6228 4.678622 GTTTGGAACTGTTTTGGACGAAT 58.321 39.130 0.00 0.00 0.00 3.34
3264 6229 4.993029 TTGGAACTGTTTTGGACGAATT 57.007 36.364 0.00 0.00 0.00 2.17
3265 6230 4.993029 TGGAACTGTTTTGGACGAATTT 57.007 36.364 0.00 0.00 0.00 1.82
3266 6231 5.331876 TGGAACTGTTTTGGACGAATTTT 57.668 34.783 0.00 0.00 0.00 1.82
3267 6232 5.725362 TGGAACTGTTTTGGACGAATTTTT 58.275 33.333 0.00 0.00 0.00 1.94
3282 6247 3.650183 TTTTTCAGATTCGTCGCGC 57.350 47.368 0.00 0.00 0.00 6.86
3283 6248 0.862490 TTTTTCAGATTCGTCGCGCA 59.138 45.000 8.75 0.00 0.00 6.09
3284 6249 0.862490 TTTTCAGATTCGTCGCGCAA 59.138 45.000 8.75 0.00 0.00 4.85
3285 6250 0.862490 TTTCAGATTCGTCGCGCAAA 59.138 45.000 8.75 0.00 0.00 3.68
3286 6251 0.162933 TTCAGATTCGTCGCGCAAAC 59.837 50.000 8.75 3.68 0.00 2.93
3287 6252 0.941936 TCAGATTCGTCGCGCAAACA 60.942 50.000 8.75 0.00 0.00 2.83
3288 6253 0.110867 CAGATTCGTCGCGCAAACAA 60.111 50.000 8.75 3.03 0.00 2.83
3289 6254 0.796312 AGATTCGTCGCGCAAACAAT 59.204 45.000 8.75 7.61 0.00 2.71
3290 6255 1.196808 AGATTCGTCGCGCAAACAATT 59.803 42.857 8.75 0.00 0.00 2.32
3291 6256 1.314412 GATTCGTCGCGCAAACAATTG 59.686 47.619 8.75 3.24 39.65 2.32
3292 6257 0.305009 TTCGTCGCGCAAACAATTGA 59.695 45.000 13.59 0.00 38.94 2.57
3293 6258 0.515127 TCGTCGCGCAAACAATTGAT 59.485 45.000 13.59 0.00 38.94 2.57
3294 6259 1.069568 TCGTCGCGCAAACAATTGATT 60.070 42.857 13.59 3.30 38.94 2.57
3295 6260 1.713404 CGTCGCGCAAACAATTGATTT 59.287 42.857 13.59 6.33 38.94 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.038426 TCATTCTTCTTCTTCCGGCACA 59.962 45.455 0.00 0.00 0.00 4.57
1 2 2.699954 TCATTCTTCTTCTTCCGGCAC 58.300 47.619 0.00 0.00 0.00 5.01
2 3 3.273434 CATCATTCTTCTTCTTCCGGCA 58.727 45.455 0.00 0.00 0.00 5.69
3 4 3.064545 CACATCATTCTTCTTCTTCCGGC 59.935 47.826 0.00 0.00 0.00 6.13
4 5 4.093998 CACACATCATTCTTCTTCTTCCGG 59.906 45.833 0.00 0.00 0.00 5.14
5 6 4.093998 CCACACATCATTCTTCTTCTTCCG 59.906 45.833 0.00 0.00 0.00 4.30
6 7 4.397417 CCCACACATCATTCTTCTTCTTCC 59.603 45.833 0.00 0.00 0.00 3.46
7 8 4.142513 GCCCACACATCATTCTTCTTCTTC 60.143 45.833 0.00 0.00 0.00 2.87
8 9 3.760684 GCCCACACATCATTCTTCTTCTT 59.239 43.478 0.00 0.00 0.00 2.52
9 10 3.350833 GCCCACACATCATTCTTCTTCT 58.649 45.455 0.00 0.00 0.00 2.85
10 11 2.424956 GGCCCACACATCATTCTTCTTC 59.575 50.000 0.00 0.00 0.00 2.87
11 12 2.450476 GGCCCACACATCATTCTTCTT 58.550 47.619 0.00 0.00 0.00 2.52
12 13 1.341383 GGGCCCACACATCATTCTTCT 60.341 52.381 19.95 0.00 0.00 2.85
13 14 1.106285 GGGCCCACACATCATTCTTC 58.894 55.000 19.95 0.00 0.00 2.87
14 15 0.324645 GGGGCCCACACATCATTCTT 60.325 55.000 26.86 0.00 0.00 2.52
15 16 1.307647 GGGGCCCACACATCATTCT 59.692 57.895 26.86 0.00 0.00 2.40
16 17 2.120909 CGGGGCCCACACATCATTC 61.121 63.158 26.86 0.00 0.00 2.67
17 18 2.044053 CGGGGCCCACACATCATT 60.044 61.111 26.86 0.00 0.00 2.57
18 19 3.338250 ACGGGGCCCACACATCAT 61.338 61.111 26.86 0.00 0.00 2.45
19 20 4.028490 GACGGGGCCCACACATCA 62.028 66.667 26.86 0.00 0.00 3.07
25 26 3.615509 TTTCATCGACGGGGCCCAC 62.616 63.158 26.86 15.00 0.00 4.61
26 27 2.896592 TTTTCATCGACGGGGCCCA 61.897 57.895 26.86 1.48 0.00 5.36
27 28 2.045731 TTTTCATCGACGGGGCCC 60.046 61.111 15.76 15.76 0.00 5.80
28 29 2.746803 CGTTTTCATCGACGGGGCC 61.747 63.158 0.00 0.00 35.74 5.80
29 30 2.782615 CGTTTTCATCGACGGGGC 59.217 61.111 0.00 0.00 35.74 5.80
33 34 2.156891 ACATTGACCGTTTTCATCGACG 59.843 45.455 0.00 0.00 38.90 5.12
34 35 3.806316 ACATTGACCGTTTTCATCGAC 57.194 42.857 0.00 0.00 0.00 4.20
35 36 4.143284 CGTTACATTGACCGTTTTCATCGA 60.143 41.667 0.00 0.00 0.00 3.59
36 37 4.079028 CGTTACATTGACCGTTTTCATCG 58.921 43.478 0.00 0.00 0.00 3.84
37 38 4.083696 ACCGTTACATTGACCGTTTTCATC 60.084 41.667 0.00 0.00 0.00 2.92
38 39 3.816523 ACCGTTACATTGACCGTTTTCAT 59.183 39.130 0.00 0.00 0.00 2.57
39 40 3.204526 ACCGTTACATTGACCGTTTTCA 58.795 40.909 0.00 0.00 0.00 2.69
40 41 3.248125 TGACCGTTACATTGACCGTTTTC 59.752 43.478 0.00 0.00 0.00 2.29
41 42 3.204526 TGACCGTTACATTGACCGTTTT 58.795 40.909 0.00 0.00 0.00 2.43
42 43 2.836262 TGACCGTTACATTGACCGTTT 58.164 42.857 0.00 0.00 0.00 3.60
43 44 2.529780 TGACCGTTACATTGACCGTT 57.470 45.000 0.00 0.00 0.00 4.44
44 45 2.529780 TTGACCGTTACATTGACCGT 57.470 45.000 0.00 0.00 0.00 4.83
45 46 3.881780 TTTTGACCGTTACATTGACCG 57.118 42.857 0.00 0.00 0.00 4.79
46 47 6.303733 CGTTTATTTTGACCGTTACATTGACC 59.696 38.462 0.00 0.00 0.00 4.02
47 48 6.303733 CCGTTTATTTTGACCGTTACATTGAC 59.696 38.462 0.00 0.00 0.00 3.18
48 49 6.204301 TCCGTTTATTTTGACCGTTACATTGA 59.796 34.615 0.00 0.00 0.00 2.57
49 50 6.372185 TCCGTTTATTTTGACCGTTACATTG 58.628 36.000 0.00 0.00 0.00 2.82
50 51 6.205270 ACTCCGTTTATTTTGACCGTTACATT 59.795 34.615 0.00 0.00 0.00 2.71
51 52 5.702209 ACTCCGTTTATTTTGACCGTTACAT 59.298 36.000 0.00 0.00 0.00 2.29
52 53 5.055812 ACTCCGTTTATTTTGACCGTTACA 58.944 37.500 0.00 0.00 0.00 2.41
53 54 5.596268 ACTCCGTTTATTTTGACCGTTAC 57.404 39.130 0.00 0.00 0.00 2.50
54 55 7.440856 AGTTAACTCCGTTTATTTTGACCGTTA 59.559 33.333 1.12 0.00 0.00 3.18
55 56 6.260714 AGTTAACTCCGTTTATTTTGACCGTT 59.739 34.615 1.12 0.00 0.00 4.44
56 57 5.759763 AGTTAACTCCGTTTATTTTGACCGT 59.240 36.000 1.12 0.00 0.00 4.83
57 58 6.232139 AGTTAACTCCGTTTATTTTGACCG 57.768 37.500 1.12 0.00 0.00 4.79
58 59 8.861033 AAAAGTTAACTCCGTTTATTTTGACC 57.139 30.769 8.95 0.00 0.00 4.02
59 60 8.961092 GGAAAAGTTAACTCCGTTTATTTTGAC 58.039 33.333 8.95 0.00 0.00 3.18
60 61 7.856894 CGGAAAAGTTAACTCCGTTTATTTTGA 59.143 33.333 20.83 0.00 45.62 2.69
61 62 7.988547 CGGAAAAGTTAACTCCGTTTATTTTG 58.011 34.615 20.83 6.22 45.62 2.44
71 72 1.196127 CGTGGCGGAAAAGTTAACTCC 59.804 52.381 8.95 5.45 0.00 3.85
72 73 1.869132 ACGTGGCGGAAAAGTTAACTC 59.131 47.619 8.95 0.00 0.00 3.01
73 74 1.869132 GACGTGGCGGAAAAGTTAACT 59.131 47.619 1.12 1.12 0.00 2.24
74 75 1.598601 TGACGTGGCGGAAAAGTTAAC 59.401 47.619 0.00 0.00 0.00 2.01
75 76 1.868498 CTGACGTGGCGGAAAAGTTAA 59.132 47.619 0.00 0.00 0.00 2.01
76 77 1.504359 CTGACGTGGCGGAAAAGTTA 58.496 50.000 0.00 0.00 0.00 2.24
77 78 1.782028 GCTGACGTGGCGGAAAAGTT 61.782 55.000 0.00 0.00 0.00 2.66
78 79 2.251642 GCTGACGTGGCGGAAAAGT 61.252 57.895 0.00 0.00 0.00 2.66
79 80 1.901650 GAGCTGACGTGGCGGAAAAG 61.902 60.000 0.00 0.00 34.52 2.27
80 81 1.959226 GAGCTGACGTGGCGGAAAA 60.959 57.895 0.00 0.00 34.52 2.29
81 82 2.357034 GAGCTGACGTGGCGGAAA 60.357 61.111 0.00 0.00 34.52 3.13
82 83 3.303135 AGAGCTGACGTGGCGGAA 61.303 61.111 0.00 0.00 34.52 4.30
83 84 4.056125 CAGAGCTGACGTGGCGGA 62.056 66.667 0.00 0.00 34.52 5.54
84 85 4.363990 ACAGAGCTGACGTGGCGG 62.364 66.667 4.21 0.00 34.52 6.13
85 86 2.807045 GACAGAGCTGACGTGGCG 60.807 66.667 4.21 0.00 34.52 5.69
86 87 2.024319 GTGACAGAGCTGACGTGGC 61.024 63.158 4.21 0.00 0.00 5.01
87 88 0.941463 GTGTGACAGAGCTGACGTGG 60.941 60.000 4.21 0.00 0.00 4.94
88 89 1.271446 CGTGTGACAGAGCTGACGTG 61.271 60.000 4.21 0.00 0.00 4.49
89 90 1.008424 CGTGTGACAGAGCTGACGT 60.008 57.895 4.21 0.00 0.00 4.34
90 91 1.730902 CCGTGTGACAGAGCTGACG 60.731 63.158 4.21 3.72 0.00 4.35
91 92 1.373497 CCCGTGTGACAGAGCTGAC 60.373 63.158 4.21 0.00 0.00 3.51
92 93 1.806461 GACCCGTGTGACAGAGCTGA 61.806 60.000 4.21 0.00 0.00 4.26
93 94 1.373497 GACCCGTGTGACAGAGCTG 60.373 63.158 0.00 0.00 0.00 4.24
94 95 2.574955 GGACCCGTGTGACAGAGCT 61.575 63.158 0.00 0.00 0.00 4.09
95 96 2.048127 GGACCCGTGTGACAGAGC 60.048 66.667 0.00 0.00 0.00 4.09
96 97 2.657237 GGGACCCGTGTGACAGAG 59.343 66.667 0.00 0.00 0.00 3.35
97 98 3.299977 CGGGACCCGTGTGACAGA 61.300 66.667 25.54 0.00 42.73 3.41
107 108 1.520787 CTTATGACGTGCGGGACCC 60.521 63.158 0.00 0.00 0.00 4.46
108 109 2.171725 GCTTATGACGTGCGGGACC 61.172 63.158 0.00 0.00 0.00 4.46
109 110 1.421410 CTGCTTATGACGTGCGGGAC 61.421 60.000 0.00 0.00 0.00 4.46
110 111 1.153647 CTGCTTATGACGTGCGGGA 60.154 57.895 0.00 0.00 0.00 5.14
111 112 2.173669 CCTGCTTATGACGTGCGGG 61.174 63.158 8.15 8.15 45.26 6.13
112 113 1.019278 AACCTGCTTATGACGTGCGG 61.019 55.000 0.00 0.00 0.00 5.69
113 114 0.796312 AAACCTGCTTATGACGTGCG 59.204 50.000 0.00 0.00 0.00 5.34
114 115 4.413495 TTTAAACCTGCTTATGACGTGC 57.587 40.909 0.00 0.00 0.00 5.34
115 116 6.607689 TGATTTTAAACCTGCTTATGACGTG 58.392 36.000 0.00 0.00 0.00 4.49
116 117 6.811253 TGATTTTAAACCTGCTTATGACGT 57.189 33.333 0.00 0.00 0.00 4.34
117 118 9.781834 TTTATGATTTTAAACCTGCTTATGACG 57.218 29.630 0.00 0.00 0.00 4.35
123 124 9.791801 ACCATTTTTATGATTTTAAACCTGCTT 57.208 25.926 0.00 0.00 0.00 3.91
124 125 9.435688 GACCATTTTTATGATTTTAAACCTGCT 57.564 29.630 0.00 0.00 0.00 4.24
125 126 9.213799 TGACCATTTTTATGATTTTAAACCTGC 57.786 29.630 0.00 0.00 0.00 4.85
135 136 9.643693 GTTGAGTTGATGACCATTTTTATGATT 57.356 29.630 0.00 0.00 0.00 2.57
136 137 9.028284 AGTTGAGTTGATGACCATTTTTATGAT 57.972 29.630 0.00 0.00 0.00 2.45
137 138 8.408043 AGTTGAGTTGATGACCATTTTTATGA 57.592 30.769 0.00 0.00 0.00 2.15
138 139 8.918658 CAAGTTGAGTTGATGACCATTTTTATG 58.081 33.333 0.00 0.00 0.00 1.90
139 140 8.090214 CCAAGTTGAGTTGATGACCATTTTTAT 58.910 33.333 3.87 0.00 0.00 1.40
140 141 7.069331 ACCAAGTTGAGTTGATGACCATTTTTA 59.931 33.333 3.87 0.00 0.00 1.52
141 142 6.127083 ACCAAGTTGAGTTGATGACCATTTTT 60.127 34.615 3.87 0.00 0.00 1.94
142 143 5.363580 ACCAAGTTGAGTTGATGACCATTTT 59.636 36.000 3.87 0.00 0.00 1.82
143 144 4.895297 ACCAAGTTGAGTTGATGACCATTT 59.105 37.500 3.87 0.00 0.00 2.32
144 145 4.473444 ACCAAGTTGAGTTGATGACCATT 58.527 39.130 3.87 0.00 0.00 3.16
145 146 4.104383 ACCAAGTTGAGTTGATGACCAT 57.896 40.909 3.87 0.00 0.00 3.55
146 147 3.576078 ACCAAGTTGAGTTGATGACCA 57.424 42.857 3.87 0.00 0.00 4.02
147 148 4.642429 ACTACCAAGTTGAGTTGATGACC 58.358 43.478 3.87 0.00 29.00 4.02
148 149 6.619801 AAACTACCAAGTTGAGTTGATGAC 57.380 37.500 3.87 0.00 45.37 3.06
149 150 7.639113 AAAAACTACCAAGTTGAGTTGATGA 57.361 32.000 3.87 0.00 45.37 2.92
174 175 9.653287 CTCCAGATTAGTACTAATTTTGTGACA 57.347 33.333 25.25 11.68 36.02 3.58
175 176 9.654663 ACTCCAGATTAGTACTAATTTTGTGAC 57.345 33.333 25.25 13.02 36.02 3.67
181 182 9.379791 CCGAAAACTCCAGATTAGTACTAATTT 57.620 33.333 25.25 18.65 36.02 1.82
182 183 8.537858 ACCGAAAACTCCAGATTAGTACTAATT 58.462 33.333 25.25 14.38 36.02 1.40
183 184 8.075761 ACCGAAAACTCCAGATTAGTACTAAT 57.924 34.615 24.86 24.86 38.38 1.73
184 185 7.177216 TGACCGAAAACTCCAGATTAGTACTAA 59.823 37.037 17.41 17.41 0.00 2.24
185 186 6.660521 TGACCGAAAACTCCAGATTAGTACTA 59.339 38.462 0.00 0.00 0.00 1.82
186 187 5.479375 TGACCGAAAACTCCAGATTAGTACT 59.521 40.000 0.00 0.00 0.00 2.73
187 188 5.575995 GTGACCGAAAACTCCAGATTAGTAC 59.424 44.000 0.00 0.00 0.00 2.73
188 189 5.479375 AGTGACCGAAAACTCCAGATTAGTA 59.521 40.000 0.00 0.00 0.00 1.82
189 190 4.283722 AGTGACCGAAAACTCCAGATTAGT 59.716 41.667 0.00 0.00 0.00 2.24
190 191 4.822026 AGTGACCGAAAACTCCAGATTAG 58.178 43.478 0.00 0.00 0.00 1.73
191 192 4.884668 AGTGACCGAAAACTCCAGATTA 57.115 40.909 0.00 0.00 0.00 1.75
192 193 3.771577 AGTGACCGAAAACTCCAGATT 57.228 42.857 0.00 0.00 0.00 2.40
193 194 3.771577 AAGTGACCGAAAACTCCAGAT 57.228 42.857 0.00 0.00 0.00 2.90
194 195 3.553828 AAAGTGACCGAAAACTCCAGA 57.446 42.857 0.00 0.00 0.00 3.86
195 196 3.625764 TGAAAAGTGACCGAAAACTCCAG 59.374 43.478 0.00 0.00 0.00 3.86
196 197 3.611970 TGAAAAGTGACCGAAAACTCCA 58.388 40.909 0.00 0.00 0.00 3.86
197 198 4.625972 TTGAAAAGTGACCGAAAACTCC 57.374 40.909 0.00 0.00 0.00 3.85
198 199 6.530181 ACATTTTGAAAAGTGACCGAAAACTC 59.470 34.615 5.42 0.00 31.05 3.01
199 200 6.310224 CACATTTTGAAAAGTGACCGAAAACT 59.690 34.615 11.98 0.00 39.28 2.66
200 201 6.454981 CCACATTTTGAAAAGTGACCGAAAAC 60.455 38.462 16.38 0.00 39.28 2.43
201 202 5.578727 CCACATTTTGAAAAGTGACCGAAAA 59.421 36.000 16.38 0.00 39.28 2.29
202 203 5.105752 CCACATTTTGAAAAGTGACCGAAA 58.894 37.500 16.38 0.00 39.28 3.46
203 204 4.158764 ACCACATTTTGAAAAGTGACCGAA 59.841 37.500 16.38 0.00 39.28 4.30
204 205 3.697045 ACCACATTTTGAAAAGTGACCGA 59.303 39.130 16.38 0.00 39.28 4.69
205 206 4.040445 ACCACATTTTGAAAAGTGACCG 57.960 40.909 16.38 7.25 39.28 4.79
206 207 6.144078 ACTACCACATTTTGAAAAGTGACC 57.856 37.500 16.38 0.00 39.28 4.02
207 208 7.432252 CAGAACTACCACATTTTGAAAAGTGAC 59.568 37.037 16.38 0.24 39.28 3.67
208 209 7.122055 ACAGAACTACCACATTTTGAAAAGTGA 59.878 33.333 16.38 3.35 39.28 3.41
209 210 7.220683 CACAGAACTACCACATTTTGAAAAGTG 59.779 37.037 10.98 10.98 37.36 3.16
210 211 7.257722 CACAGAACTACCACATTTTGAAAAGT 58.742 34.615 0.00 0.00 0.00 2.66
211 212 6.697019 CCACAGAACTACCACATTTTGAAAAG 59.303 38.462 0.00 0.00 0.00 2.27
212 213 6.406400 CCCACAGAACTACCACATTTTGAAAA 60.406 38.462 0.00 0.00 0.00 2.29
213 214 5.068460 CCCACAGAACTACCACATTTTGAAA 59.932 40.000 0.00 0.00 0.00 2.69
214 215 4.582656 CCCACAGAACTACCACATTTTGAA 59.417 41.667 0.00 0.00 0.00 2.69
215 216 4.141287 CCCACAGAACTACCACATTTTGA 58.859 43.478 0.00 0.00 0.00 2.69
216 217 4.023193 GTCCCACAGAACTACCACATTTTG 60.023 45.833 0.00 0.00 0.00 2.44
217 218 4.142038 GTCCCACAGAACTACCACATTTT 58.858 43.478 0.00 0.00 0.00 1.82
218 219 3.137544 TGTCCCACAGAACTACCACATTT 59.862 43.478 0.00 0.00 0.00 2.32
219 220 2.708861 TGTCCCACAGAACTACCACATT 59.291 45.455 0.00 0.00 0.00 2.71
220 221 2.334977 TGTCCCACAGAACTACCACAT 58.665 47.619 0.00 0.00 0.00 3.21
221 222 1.796017 TGTCCCACAGAACTACCACA 58.204 50.000 0.00 0.00 0.00 4.17
222 223 2.922740 TTGTCCCACAGAACTACCAC 57.077 50.000 0.00 0.00 0.00 4.16
223 224 2.976185 TCATTGTCCCACAGAACTACCA 59.024 45.455 0.00 0.00 0.00 3.25
224 225 3.244422 TGTCATTGTCCCACAGAACTACC 60.244 47.826 0.00 0.00 0.00 3.18
225 226 4.002906 TGTCATTGTCCCACAGAACTAC 57.997 45.455 0.00 0.00 0.00 2.73
226 227 4.285775 TCATGTCATTGTCCCACAGAACTA 59.714 41.667 0.00 0.00 0.00 2.24
227 228 3.072915 TCATGTCATTGTCCCACAGAACT 59.927 43.478 0.00 0.00 0.00 3.01
228 229 3.411446 TCATGTCATTGTCCCACAGAAC 58.589 45.455 0.00 0.00 0.00 3.01
229 230 3.786368 TCATGTCATTGTCCCACAGAA 57.214 42.857 0.00 0.00 0.00 3.02
230 231 3.786368 TTCATGTCATTGTCCCACAGA 57.214 42.857 0.00 0.00 0.00 3.41
231 232 4.219070 ACATTTCATGTCATTGTCCCACAG 59.781 41.667 0.00 0.00 39.92 3.66
232 233 4.022155 CACATTTCATGTCATTGTCCCACA 60.022 41.667 0.00 0.00 42.70 4.17
233 234 4.487948 CACATTTCATGTCATTGTCCCAC 58.512 43.478 0.00 0.00 42.70 4.61
234 235 3.510753 CCACATTTCATGTCATTGTCCCA 59.489 43.478 0.00 0.00 42.70 4.37
235 236 3.511146 ACCACATTTCATGTCATTGTCCC 59.489 43.478 0.00 0.00 42.70 4.46
236 237 4.789012 ACCACATTTCATGTCATTGTCC 57.211 40.909 0.00 0.00 42.70 4.02
237 238 6.500684 ACTACCACATTTCATGTCATTGTC 57.499 37.500 0.00 0.00 42.70 3.18
238 239 6.899393 AACTACCACATTTCATGTCATTGT 57.101 33.333 0.00 0.00 42.70 2.71
239 240 8.592105 AAAAACTACCACATTTCATGTCATTG 57.408 30.769 0.00 0.00 42.70 2.82
261 262 4.520874 TGCGGATGGAGTATTTGACAAAAA 59.479 37.500 4.41 0.00 0.00 1.94
262 263 4.075682 TGCGGATGGAGTATTTGACAAAA 58.924 39.130 4.41 0.00 0.00 2.44
263 264 3.680490 TGCGGATGGAGTATTTGACAAA 58.320 40.909 2.48 2.48 0.00 2.83
264 265 3.342377 TGCGGATGGAGTATTTGACAA 57.658 42.857 0.00 0.00 0.00 3.18
265 266 3.342377 TTGCGGATGGAGTATTTGACA 57.658 42.857 0.00 0.00 0.00 3.58
266 267 3.938963 TCTTTGCGGATGGAGTATTTGAC 59.061 43.478 0.00 0.00 0.00 3.18
267 268 4.214986 TCTTTGCGGATGGAGTATTTGA 57.785 40.909 0.00 0.00 0.00 2.69
268 269 4.963276 TTCTTTGCGGATGGAGTATTTG 57.037 40.909 0.00 0.00 0.00 2.32
269 270 7.823745 ATATTTCTTTGCGGATGGAGTATTT 57.176 32.000 0.00 0.00 0.00 1.40
270 271 8.918202 TTATATTTCTTTGCGGATGGAGTATT 57.082 30.769 0.00 0.00 0.00 1.89
271 272 8.375506 TCTTATATTTCTTTGCGGATGGAGTAT 58.624 33.333 0.00 0.00 0.00 2.12
272 273 7.732025 TCTTATATTTCTTTGCGGATGGAGTA 58.268 34.615 0.00 0.00 0.00 2.59
273 274 6.591935 TCTTATATTTCTTTGCGGATGGAGT 58.408 36.000 0.00 0.00 0.00 3.85
274 275 6.348050 GCTCTTATATTTCTTTGCGGATGGAG 60.348 42.308 0.00 0.00 0.00 3.86
275 276 5.470098 GCTCTTATATTTCTTTGCGGATGGA 59.530 40.000 0.00 0.00 0.00 3.41
276 277 5.615544 CGCTCTTATATTTCTTTGCGGATGG 60.616 44.000 0.00 0.00 38.74 3.51
277 278 5.050091 ACGCTCTTATATTTCTTTGCGGATG 60.050 40.000 0.00 0.00 45.26 3.51
278 279 5.057149 ACGCTCTTATATTTCTTTGCGGAT 58.943 37.500 0.00 0.00 45.26 4.18
279 280 4.439057 ACGCTCTTATATTTCTTTGCGGA 58.561 39.130 0.00 0.00 45.26 5.54
280 281 4.795970 ACGCTCTTATATTTCTTTGCGG 57.204 40.909 0.00 0.00 45.26 5.69
281 282 7.618442 TCTAAACGCTCTTATATTTCTTTGCG 58.382 34.615 0.00 0.00 46.21 4.85
282 283 9.587461 GATCTAAACGCTCTTATATTTCTTTGC 57.413 33.333 0.00 0.00 0.00 3.68
291 292 8.291032 GCTCTTAGTGATCTAAACGCTCTTATA 58.709 37.037 0.00 0.00 35.98 0.98
292 293 7.142680 GCTCTTAGTGATCTAAACGCTCTTAT 58.857 38.462 0.00 0.00 35.98 1.73
293 294 6.496571 GCTCTTAGTGATCTAAACGCTCTTA 58.503 40.000 0.00 0.00 35.98 2.10
294 295 5.344884 GCTCTTAGTGATCTAAACGCTCTT 58.655 41.667 0.00 0.00 35.98 2.85
295 296 4.496673 CGCTCTTAGTGATCTAAACGCTCT 60.497 45.833 0.00 0.00 35.98 4.09
296 297 3.726730 CGCTCTTAGTGATCTAAACGCTC 59.273 47.826 0.00 0.00 35.98 5.03
297 298 3.128938 ACGCTCTTAGTGATCTAAACGCT 59.871 43.478 0.00 0.00 35.98 5.07
298 299 3.436496 ACGCTCTTAGTGATCTAAACGC 58.564 45.455 0.00 0.00 35.98 4.84
299 300 6.965500 TCTAAACGCTCTTAGTGATCTAAACG 59.035 38.462 0.00 0.00 35.98 3.60
300 301 8.859517 ATCTAAACGCTCTTAGTGATCTAAAC 57.140 34.615 0.00 0.00 35.98 2.01
301 302 8.683615 TGATCTAAACGCTCTTAGTGATCTAAA 58.316 33.333 0.00 0.00 35.98 1.85
302 303 8.129840 GTGATCTAAACGCTCTTAGTGATCTAA 58.870 37.037 0.00 0.00 35.25 2.10
303 304 7.499563 AGTGATCTAAACGCTCTTAGTGATCTA 59.500 37.037 0.00 0.00 31.86 1.98
304 305 6.320164 AGTGATCTAAACGCTCTTAGTGATCT 59.680 38.462 0.00 0.00 31.86 2.75
305 306 6.500041 AGTGATCTAAACGCTCTTAGTGATC 58.500 40.000 0.00 0.00 31.86 2.92
306 307 6.458232 AGTGATCTAAACGCTCTTAGTGAT 57.542 37.500 0.00 0.00 31.86 3.06
307 308 5.899120 AGTGATCTAAACGCTCTTAGTGA 57.101 39.130 0.00 0.00 31.86 3.41
308 309 7.755822 ACTTTAGTGATCTAAACGCTCTTAGTG 59.244 37.037 0.00 0.00 40.05 2.74
309 310 7.828712 ACTTTAGTGATCTAAACGCTCTTAGT 58.171 34.615 0.00 0.00 40.05 2.24
310 311 9.440784 CTACTTTAGTGATCTAAACGCTCTTAG 57.559 37.037 0.00 0.00 40.05 2.18
311 312 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
312 313 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
313 314 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
327 328 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
328 329 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
343 344 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
344 345 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
345 346 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
346 347 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
347 348 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
352 353 9.064706 CGAGTACTCCCTCTGTAAAGAAATATA 57.935 37.037 17.23 0.00 0.00 0.86
353 354 7.778853 TCGAGTACTCCCTCTGTAAAGAAATAT 59.221 37.037 17.23 0.00 0.00 1.28
354 355 7.114754 TCGAGTACTCCCTCTGTAAAGAAATA 58.885 38.462 17.23 0.00 0.00 1.40
355 356 5.950549 TCGAGTACTCCCTCTGTAAAGAAAT 59.049 40.000 17.23 0.00 0.00 2.17
356 357 5.319453 TCGAGTACTCCCTCTGTAAAGAAA 58.681 41.667 17.23 0.00 0.00 2.52
357 358 4.914983 TCGAGTACTCCCTCTGTAAAGAA 58.085 43.478 17.23 0.00 0.00 2.52
358 359 4.564782 TCGAGTACTCCCTCTGTAAAGA 57.435 45.455 17.23 1.76 0.00 2.52
359 360 5.838531 AATCGAGTACTCCCTCTGTAAAG 57.161 43.478 17.23 0.00 0.00 1.85
360 361 6.264744 CCATAATCGAGTACTCCCTCTGTAAA 59.735 42.308 17.23 0.00 0.00 2.01
361 362 5.768662 CCATAATCGAGTACTCCCTCTGTAA 59.231 44.000 17.23 0.00 0.00 2.41
362 363 5.314529 CCATAATCGAGTACTCCCTCTGTA 58.685 45.833 17.23 2.19 0.00 2.74
363 364 4.145807 CCATAATCGAGTACTCCCTCTGT 58.854 47.826 17.23 0.02 0.00 3.41
364 365 3.508012 CCCATAATCGAGTACTCCCTCTG 59.492 52.174 17.23 8.37 0.00 3.35
365 366 3.398292 TCCCATAATCGAGTACTCCCTCT 59.602 47.826 17.23 2.35 0.00 3.69
366 367 3.759618 CTCCCATAATCGAGTACTCCCTC 59.240 52.174 17.23 0.00 0.00 4.30
367 368 3.500654 CCTCCCATAATCGAGTACTCCCT 60.501 52.174 17.23 4.45 0.00 4.20
368 369 2.826725 CCTCCCATAATCGAGTACTCCC 59.173 54.545 17.23 0.00 0.00 4.30
369 370 3.764218 TCCTCCCATAATCGAGTACTCC 58.236 50.000 17.23 0.00 0.00 3.85
370 371 5.071370 TCTTCCTCCCATAATCGAGTACTC 58.929 45.833 13.18 13.18 0.00 2.59
371 372 5.063017 TCTTCCTCCCATAATCGAGTACT 57.937 43.478 0.00 0.00 0.00 2.73
372 373 5.279056 CCTTCTTCCTCCCATAATCGAGTAC 60.279 48.000 0.00 0.00 0.00 2.73
373 374 4.833380 CCTTCTTCCTCCCATAATCGAGTA 59.167 45.833 0.00 0.00 0.00 2.59
374 375 3.643792 CCTTCTTCCTCCCATAATCGAGT 59.356 47.826 0.00 0.00 0.00 4.18
375 376 3.556004 GCCTTCTTCCTCCCATAATCGAG 60.556 52.174 0.00 0.00 0.00 4.04
376 377 2.368875 GCCTTCTTCCTCCCATAATCGA 59.631 50.000 0.00 0.00 0.00 3.59
377 378 2.104792 TGCCTTCTTCCTCCCATAATCG 59.895 50.000 0.00 0.00 0.00 3.34
378 379 3.137360 ACTGCCTTCTTCCTCCCATAATC 59.863 47.826 0.00 0.00 0.00 1.75
379 380 3.126453 ACTGCCTTCTTCCTCCCATAAT 58.874 45.455 0.00 0.00 0.00 1.28
380 381 2.562296 ACTGCCTTCTTCCTCCCATAA 58.438 47.619 0.00 0.00 0.00 1.90
381 382 2.239654 CAACTGCCTTCTTCCTCCCATA 59.760 50.000 0.00 0.00 0.00 2.74
382 383 1.005215 CAACTGCCTTCTTCCTCCCAT 59.995 52.381 0.00 0.00 0.00 4.00
453 454 3.225104 TCAAGCATCAGCCACTTCTTTT 58.775 40.909 0.00 0.00 43.56 2.27
454 455 2.867624 TCAAGCATCAGCCACTTCTTT 58.132 42.857 0.00 0.00 43.56 2.52
455 456 2.574006 TCAAGCATCAGCCACTTCTT 57.426 45.000 0.00 0.00 43.56 2.52
1695 4619 1.612442 AGGGTTCTTGCGGAGGCTA 60.612 57.895 0.00 0.00 40.82 3.93
2573 5533 2.154567 TTGACGCCCTGGTAGACTAT 57.845 50.000 0.00 0.00 0.00 2.12
2685 5646 1.001520 CCACTACATGAACGTGGGTCA 59.998 52.381 18.58 0.00 43.41 4.02
2706 5668 0.253160 TTGAGTGGGGTCCTAGGCAT 60.253 55.000 2.96 0.00 0.00 4.40
2929 5894 4.530553 TCGTACCATAGGCCATGTATGAAT 59.469 41.667 5.01 0.00 32.21 2.57
2977 5942 2.330041 CGGACAACCAAACACGCC 59.670 61.111 0.00 0.00 35.59 5.68
3139 6104 7.466590 GCATCTTTTTCATGTAGAGCTTACCTC 60.467 40.741 0.00 0.00 41.07 3.85
3146 6111 4.397417 AGGTGCATCTTTTTCATGTAGAGC 59.603 41.667 0.00 0.00 0.00 4.09
3147 6112 5.220548 CGAGGTGCATCTTTTTCATGTAGAG 60.221 44.000 0.00 0.00 0.00 2.43
3151 6116 3.411446 TCGAGGTGCATCTTTTTCATGT 58.589 40.909 0.00 0.00 0.00 3.21
3191 6156 1.463444 ACAAAGCTACAAACCGATCGC 59.537 47.619 10.32 0.00 0.00 4.58
3205 6170 2.470821 AGCATATACGGTCGACAAAGC 58.529 47.619 18.91 10.59 0.00 3.51
3206 6171 3.702330 TGAGCATATACGGTCGACAAAG 58.298 45.455 18.91 10.48 36.16 2.77
3207 6172 3.786516 TGAGCATATACGGTCGACAAA 57.213 42.857 18.91 1.71 36.16 2.83
3208 6173 3.786516 TTGAGCATATACGGTCGACAA 57.213 42.857 18.91 2.11 36.16 3.18
3209 6174 4.316205 AATTGAGCATATACGGTCGACA 57.684 40.909 18.91 0.00 36.16 4.35
3210 6175 4.982916 AGAAATTGAGCATATACGGTCGAC 59.017 41.667 7.13 7.13 36.16 4.20
3211 6176 5.196341 AGAAATTGAGCATATACGGTCGA 57.804 39.130 0.00 0.00 36.16 4.20
3212 6177 5.234329 ACAAGAAATTGAGCATATACGGTCG 59.766 40.000 0.00 0.00 36.16 4.79
3213 6178 6.604735 ACAAGAAATTGAGCATATACGGTC 57.395 37.500 0.00 0.00 0.00 4.79
3214 6179 6.038271 GGAACAAGAAATTGAGCATATACGGT 59.962 38.462 0.00 0.00 0.00 4.83
3215 6180 6.430451 GGAACAAGAAATTGAGCATATACGG 58.570 40.000 0.00 0.00 0.00 4.02
3216 6181 6.430451 GGGAACAAGAAATTGAGCATATACG 58.570 40.000 0.00 0.00 0.00 3.06
3217 6182 6.038271 ACGGGAACAAGAAATTGAGCATATAC 59.962 38.462 0.00 0.00 0.00 1.47
3218 6183 6.119536 ACGGGAACAAGAAATTGAGCATATA 58.880 36.000 0.00 0.00 0.00 0.86
3219 6184 4.949856 ACGGGAACAAGAAATTGAGCATAT 59.050 37.500 0.00 0.00 0.00 1.78
3220 6185 4.331968 ACGGGAACAAGAAATTGAGCATA 58.668 39.130 0.00 0.00 0.00 3.14
3221 6186 3.157087 ACGGGAACAAGAAATTGAGCAT 58.843 40.909 0.00 0.00 0.00 3.79
3222 6187 2.582052 ACGGGAACAAGAAATTGAGCA 58.418 42.857 0.00 0.00 0.00 4.26
3223 6188 3.643159 AACGGGAACAAGAAATTGAGC 57.357 42.857 0.00 0.00 0.00 4.26
3224 6189 4.037446 TCCAAACGGGAACAAGAAATTGAG 59.963 41.667 0.00 0.00 44.80 3.02
3225 6190 3.954904 TCCAAACGGGAACAAGAAATTGA 59.045 39.130 0.00 0.00 44.80 2.57
3226 6191 4.314740 TCCAAACGGGAACAAGAAATTG 57.685 40.909 0.00 0.00 44.80 2.32
3237 6202 1.751924 CCAAAACAGTTCCAAACGGGA 59.248 47.619 0.00 0.00 46.61 5.14
3238 6203 1.751924 TCCAAAACAGTTCCAAACGGG 59.248 47.619 0.00 0.00 36.23 5.28
3239 6204 2.793237 CGTCCAAAACAGTTCCAAACGG 60.793 50.000 0.00 0.00 36.23 4.44
3240 6205 2.096174 TCGTCCAAAACAGTTCCAAACG 59.904 45.455 5.37 5.37 36.23 3.60
3241 6206 3.768468 TCGTCCAAAACAGTTCCAAAC 57.232 42.857 0.00 0.00 0.00 2.93
3242 6207 4.993029 ATTCGTCCAAAACAGTTCCAAA 57.007 36.364 0.00 0.00 0.00 3.28
3243 6208 4.993029 AATTCGTCCAAAACAGTTCCAA 57.007 36.364 0.00 0.00 0.00 3.53
3244 6209 4.993029 AAATTCGTCCAAAACAGTTCCA 57.007 36.364 0.00 0.00 0.00 3.53
3264 6229 0.862490 TGCGCGACGAATCTGAAAAA 59.138 45.000 12.10 0.00 0.00 1.94
3265 6230 0.862490 TTGCGCGACGAATCTGAAAA 59.138 45.000 12.10 0.00 0.00 2.29
3266 6231 0.862490 TTTGCGCGACGAATCTGAAA 59.138 45.000 12.10 0.00 0.00 2.69
3267 6232 0.162933 GTTTGCGCGACGAATCTGAA 59.837 50.000 12.10 0.00 0.00 3.02
3268 6233 0.941936 TGTTTGCGCGACGAATCTGA 60.942 50.000 12.10 0.00 0.00 3.27
3269 6234 0.110867 TTGTTTGCGCGACGAATCTG 60.111 50.000 12.10 0.00 0.00 2.90
3270 6235 0.796312 ATTGTTTGCGCGACGAATCT 59.204 45.000 12.10 0.00 0.00 2.40
3271 6236 1.314412 CAATTGTTTGCGCGACGAATC 59.686 47.619 12.10 0.00 0.00 2.52
3272 6237 1.069568 TCAATTGTTTGCGCGACGAAT 60.070 42.857 12.10 0.00 32.61 3.34
3273 6238 0.305009 TCAATTGTTTGCGCGACGAA 59.695 45.000 12.10 4.49 32.61 3.85
3274 6239 0.515127 ATCAATTGTTTGCGCGACGA 59.485 45.000 12.10 4.33 32.61 4.20
3275 6240 1.326576 AATCAATTGTTTGCGCGACG 58.673 45.000 12.10 0.00 32.61 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.