Multiple sequence alignment - TraesCS3B01G484400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G484400 chr3B 100.000 5360 0 0 1 5360 730856092 730861451 0.000000e+00 9899.0
1 TraesCS3B01G484400 chr3B 89.509 896 59 12 377 1256 730931899 730932775 0.000000e+00 1101.0
2 TraesCS3B01G484400 chr3B 88.986 572 55 3 3749 4318 730933209 730933774 0.000000e+00 701.0
3 TraesCS3B01G484400 chr3B 92.821 390 23 3 4506 4890 730933999 730934388 1.300000e-155 560.0
4 TraesCS3B01G484400 chr3B 80.000 250 29 8 4436 4673 730904991 730905231 1.190000e-36 165.0
5 TraesCS3B01G484400 chr3B 94.000 50 3 0 3703 3752 730932777 730932826 5.760000e-10 76.8
6 TraesCS3B01G484400 chr4B 98.896 2445 24 2 1261 3704 93300424 93302866 0.000000e+00 4362.0
7 TraesCS3B01G484400 chr2A 96.690 2447 72 7 1256 3701 565073830 565071392 0.000000e+00 4061.0
8 TraesCS3B01G484400 chr2A 93.684 2074 117 10 1256 3324 586354099 586356163 0.000000e+00 3092.0
9 TraesCS3B01G484400 chr2A 94.872 390 16 1 3316 3701 154810729 154811118 1.650000e-169 606.0
10 TraesCS3B01G484400 chr7A 94.173 2454 123 11 1257 3701 670012047 670014489 0.000000e+00 3722.0
11 TraesCS3B01G484400 chr7A 93.627 2448 130 14 1262 3701 137848344 137850773 0.000000e+00 3633.0
12 TraesCS3B01G484400 chr7A 93.035 2455 128 15 1255 3701 562180603 562183022 0.000000e+00 3546.0
13 TraesCS3B01G484400 chr1A 94.078 2077 112 9 1253 3324 319421877 319423947 0.000000e+00 3144.0
14 TraesCS3B01G484400 chr3A 93.917 2055 104 12 1261 3313 53894758 53892723 0.000000e+00 3083.0
15 TraesCS3B01G484400 chr3A 85.558 1281 90 34 1 1256 688486172 688487382 0.000000e+00 1253.0
16 TraesCS3B01G484400 chr3A 89.095 486 44 6 3836 4318 688487465 688487944 3.570000e-166 595.0
17 TraesCS3B01G484400 chr3A 92.899 338 24 0 4579 4916 688488373 688488710 4.820000e-135 492.0
18 TraesCS3B01G484400 chr3A 93.567 171 8 3 4414 4582 688488022 688488191 8.910000e-63 252.0
19 TraesCS3B01G484400 chr3A 91.954 87 4 1 3703 3786 688487384 688487470 9.430000e-23 119.0
20 TraesCS3B01G484400 chrUn 93.466 2066 121 12 1262 3324 222438280 222440334 0.000000e+00 3055.0
21 TraesCS3B01G484400 chr3D 90.628 1227 77 21 43 1256 551247253 551248454 0.000000e+00 1594.0
22 TraesCS3B01G484400 chr3D 86.290 1240 95 33 3703 4927 551248456 551249635 0.000000e+00 1279.0
23 TraesCS3B01G484400 chr3D 94.444 162 5 3 5180 5341 46449564 46449721 4.150000e-61 246.0
24 TraesCS3B01G484400 chr3D 93.939 165 6 3 5180 5344 529939726 529939566 4.150000e-61 246.0
25 TraesCS3B01G484400 chr3D 93.902 164 6 2 5178 5341 487108869 487109028 1.490000e-60 244.0
26 TraesCS3B01G484400 chr3D 98.148 108 2 0 4940 5047 551250323 551250430 7.090000e-44 189.0
27 TraesCS3B01G484400 chr3D 91.525 59 5 0 4382 4440 551243702 551243760 1.240000e-11 82.4
28 TraesCS3B01G484400 chr6A 94.224 554 27 2 3153 3701 461095631 461095078 0.000000e+00 841.0
29 TraesCS3B01G484400 chr7D 94.545 165 8 1 5180 5344 159534886 159534723 2.480000e-63 254.0
30 TraesCS3B01G484400 chr4D 95.062 162 4 3 5180 5341 26466468 26466625 8.910000e-63 252.0
31 TraesCS3B01G484400 chr4D 94.444 162 6 3 5180 5341 28198550 28198708 4.150000e-61 246.0
32 TraesCS3B01G484400 chr6D 94.444 162 6 2 5180 5341 390046482 390046640 4.150000e-61 246.0
33 TraesCS3B01G484400 chr1D 94.444 162 4 4 5180 5341 96422123 96422279 1.490000e-60 244.0
34 TraesCS3B01G484400 chr1D 93.413 167 8 2 5180 5344 191761848 191761683 1.490000e-60 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G484400 chr3B 730856092 730861451 5359 False 9899.0 9899 100.00000 1 5360 1 chr3B.!!$F1 5359
1 TraesCS3B01G484400 chr3B 730931899 730934388 2489 False 609.7 1101 91.32900 377 4890 4 chr3B.!!$F3 4513
2 TraesCS3B01G484400 chr4B 93300424 93302866 2442 False 4362.0 4362 98.89600 1261 3704 1 chr4B.!!$F1 2443
3 TraesCS3B01G484400 chr2A 565071392 565073830 2438 True 4061.0 4061 96.69000 1256 3701 1 chr2A.!!$R1 2445
4 TraesCS3B01G484400 chr2A 586354099 586356163 2064 False 3092.0 3092 93.68400 1256 3324 1 chr2A.!!$F2 2068
5 TraesCS3B01G484400 chr7A 670012047 670014489 2442 False 3722.0 3722 94.17300 1257 3701 1 chr7A.!!$F3 2444
6 TraesCS3B01G484400 chr7A 137848344 137850773 2429 False 3633.0 3633 93.62700 1262 3701 1 chr7A.!!$F1 2439
7 TraesCS3B01G484400 chr7A 562180603 562183022 2419 False 3546.0 3546 93.03500 1255 3701 1 chr7A.!!$F2 2446
8 TraesCS3B01G484400 chr1A 319421877 319423947 2070 False 3144.0 3144 94.07800 1253 3324 1 chr1A.!!$F1 2071
9 TraesCS3B01G484400 chr3A 53892723 53894758 2035 True 3083.0 3083 93.91700 1261 3313 1 chr3A.!!$R1 2052
10 TraesCS3B01G484400 chr3A 688486172 688488710 2538 False 542.2 1253 90.61460 1 4916 5 chr3A.!!$F1 4915
11 TraesCS3B01G484400 chrUn 222438280 222440334 2054 False 3055.0 3055 93.46600 1262 3324 1 chrUn.!!$F1 2062
12 TraesCS3B01G484400 chr3D 551243702 551250430 6728 False 786.1 1594 91.64775 43 5047 4 chr3D.!!$F3 5004
13 TraesCS3B01G484400 chr6A 461095078 461095631 553 True 841.0 841 94.22400 3153 3701 1 chr6A.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
696 4225 0.035534 ATAGCCCACACACATCGCAA 60.036 50.000 0.00 0.0 0.0 4.85 F
1994 5555 0.173935 CGACCACAATACCCACGCTA 59.826 55.000 0.00 0.0 0.0 4.26 F
2230 5795 2.562912 CCTTCATGCAAACGCGCT 59.437 55.556 5.73 0.0 0.0 5.92 F
3796 7833 0.893727 ACCATCCAACACTTTCCGCC 60.894 55.000 0.00 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2478 6046 1.067142 TGTAGTCGTGAGTTGGCCATC 60.067 52.381 6.09 5.81 0.00 3.51 R
3627 7215 2.139917 GTGCACCACGTGTCTATTTGA 58.860 47.619 15.65 0.00 35.75 2.69 R
3996 8034 0.755327 GCCTACGGGAAATGGGCAAT 60.755 55.000 0.00 0.00 42.98 3.56 R
5099 10114 0.039527 CCAGGTTTTTGCTACACGCC 60.040 55.000 0.00 0.00 38.05 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 3641 7.033530 ACATACCAACGTTTTTCAAGATCAA 57.966 32.000 0.00 0.00 0.00 2.57
133 3645 6.033966 ACCAACGTTTTTCAAGATCAAGAAC 58.966 36.000 0.00 0.00 0.00 3.01
170 3682 8.654997 TCCCCTAACATTTTTCAAAATCATGAA 58.345 29.630 0.00 0.00 36.52 2.57
210 3722 8.973378 TCACGAACATTTTATGATTTTCAAACC 58.027 29.630 0.00 0.00 0.00 3.27
360 3886 2.432174 AAAGGGCACAAGGGGAGCTC 62.432 60.000 4.71 4.71 0.00 4.09
383 3909 3.459027 CGCGCTCGCTGTCTTTAA 58.541 55.556 5.56 0.00 39.32 1.52
443 3970 1.540363 GGTTCACTGAAGTCGGAAGCA 60.540 52.381 7.48 0.00 37.61 3.91
449 3976 2.027745 ACTGAAGTCGGAAGCATGATGT 60.028 45.455 0.00 0.00 0.00 3.06
608 4137 0.107017 CATCCATCTCGTTTGGGCCT 60.107 55.000 4.53 0.00 34.85 5.19
696 4225 0.035534 ATAGCCCACACACATCGCAA 60.036 50.000 0.00 0.00 0.00 4.85
744 4273 5.853572 TTGTAACCCTAACTTTCATCCCT 57.146 39.130 0.00 0.00 0.00 4.20
746 4275 4.226620 TGTAACCCTAACTTTCATCCCTCC 59.773 45.833 0.00 0.00 0.00 4.30
747 4276 1.838077 ACCCTAACTTTCATCCCTCCG 59.162 52.381 0.00 0.00 0.00 4.63
748 4277 1.475213 CCCTAACTTTCATCCCTCCGC 60.475 57.143 0.00 0.00 0.00 5.54
749 4278 1.486726 CCTAACTTTCATCCCTCCGCT 59.513 52.381 0.00 0.00 0.00 5.52
750 4279 2.483889 CCTAACTTTCATCCCTCCGCTC 60.484 54.545 0.00 0.00 0.00 5.03
751 4280 0.253327 AACTTTCATCCCTCCGCTCC 59.747 55.000 0.00 0.00 0.00 4.70
752 4281 1.147153 CTTTCATCCCTCCGCTCCC 59.853 63.158 0.00 0.00 0.00 4.30
753 4282 2.330924 CTTTCATCCCTCCGCTCCCC 62.331 65.000 0.00 0.00 0.00 4.81
754 4283 4.880426 TCATCCCTCCGCTCCCCC 62.880 72.222 0.00 0.00 0.00 5.40
856 4401 4.787280 CGCCCACCCTCCTCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
876 4421 2.280797 TGCTCCAGGTGCGTCAAC 60.281 61.111 8.97 0.00 0.00 3.18
909 4454 2.062070 GTGCTCCACCTCCTCAAGT 58.938 57.895 0.00 0.00 0.00 3.16
925 4470 3.107601 TCAAGTACTCCTCCCCATTCTG 58.892 50.000 0.00 0.00 0.00 3.02
934 4479 1.563410 CTCCCCATTCTGCTCTTTCCT 59.437 52.381 0.00 0.00 0.00 3.36
935 4480 1.283029 TCCCCATTCTGCTCTTTCCTG 59.717 52.381 0.00 0.00 0.00 3.86
952 4497 2.397413 CTGTGGAGGGCGAAGGTTGT 62.397 60.000 0.00 0.00 0.00 3.32
1150 4703 7.837202 AATCTGCACAAAAATTCATATGTGG 57.163 32.000 1.90 0.00 42.56 4.17
1407 4961 6.449635 AATTTGTTCTCTGTGTGCACTTAA 57.550 33.333 19.41 2.38 0.00 1.85
1846 5403 3.967715 GGCTTCCTCCGAACACAC 58.032 61.111 0.00 0.00 0.00 3.82
1994 5555 0.173935 CGACCACAATACCCACGCTA 59.826 55.000 0.00 0.00 0.00 4.26
2059 5620 6.027025 TGAGTATCCTGGACCAGTATAAGT 57.973 41.667 20.24 5.45 0.00 2.24
2230 5795 2.562912 CCTTCATGCAAACGCGCT 59.437 55.556 5.73 0.00 0.00 5.92
2478 6046 9.590451 TTTCAAGTACTGATTACCGGTTATTAG 57.410 33.333 20.19 20.19 35.60 1.73
3084 6663 3.058224 GCTAAAATTGGAAGCGTGTCTGT 60.058 43.478 0.00 0.00 0.00 3.41
3746 7334 2.786777 GTTGAATTCAACGTAGGGGGT 58.213 47.619 29.94 0.00 45.44 4.95
3747 7335 3.941573 GTTGAATTCAACGTAGGGGGTA 58.058 45.455 29.94 0.00 45.44 3.69
3796 7833 0.893727 ACCATCCAACACTTTCCGCC 60.894 55.000 0.00 0.00 0.00 6.13
3831 7868 2.510238 AGCGCTCGCATGAAGGAC 60.510 61.111 16.86 0.00 44.88 3.85
3962 7999 7.961325 TGGGAAATTTTCATTCTTAGTTTGC 57.039 32.000 11.09 0.00 0.00 3.68
3982 8019 9.723601 AGTTTGCCATTTTTGTATGAAATGTAT 57.276 25.926 8.28 0.00 40.94 2.29
4047 8085 4.559063 CCGCATGCTCCTGGAGGG 62.559 72.222 24.43 13.01 35.41 4.30
4062 8100 3.771160 GGGGGCGATGACGTGACT 61.771 66.667 0.00 0.00 41.98 3.41
4099 8137 2.827642 GCATGGAGGAGCTGGTGC 60.828 66.667 0.00 0.00 40.05 5.01
4141 8179 3.830192 CAAGATTGCCCGGCTGCC 61.830 66.667 11.61 9.11 0.00 4.85
4232 8270 1.930503 CGACATGGCAGCGTACAATAA 59.069 47.619 0.00 0.00 0.00 1.40
4255 8293 4.902308 CGTACCCGCTGAACATGA 57.098 55.556 0.00 0.00 0.00 3.07
4261 8299 1.349627 CCGCTGAACATGACATCGC 59.650 57.895 0.00 0.00 0.00 4.58
4318 8356 4.072088 CGCGCCGTCCTCAACAAC 62.072 66.667 0.00 0.00 0.00 3.32
4320 8358 4.072088 CGCCGTCCTCAACAACGC 62.072 66.667 0.00 0.00 37.56 4.84
4321 8359 3.723348 GCCGTCCTCAACAACGCC 61.723 66.667 0.00 0.00 37.56 5.68
4324 8362 1.372004 CGTCCTCAACAACGCCGTA 60.372 57.895 0.00 0.00 31.48 4.02
4325 8363 1.611592 CGTCCTCAACAACGCCGTAC 61.612 60.000 0.00 0.00 31.48 3.67
4337 8375 2.183555 CCGTACGGCTCCCTTCAC 59.816 66.667 23.44 0.00 0.00 3.18
4338 8376 2.202570 CGTACGGCTCCCTTCACG 60.203 66.667 7.57 0.00 0.00 4.35
4339 8377 2.968206 GTACGGCTCCCTTCACGT 59.032 61.111 0.00 0.00 42.71 4.49
4340 8378 1.153881 GTACGGCTCCCTTCACGTC 60.154 63.158 0.00 0.00 40.38 4.34
4341 8379 2.345760 TACGGCTCCCTTCACGTCC 61.346 63.158 0.00 0.00 40.38 4.79
4342 8380 4.452733 CGGCTCCCTTCACGTCCC 62.453 72.222 0.00 0.00 0.00 4.46
4343 8381 3.319198 GGCTCCCTTCACGTCCCA 61.319 66.667 0.00 0.00 0.00 4.37
4344 8382 2.266055 GCTCCCTTCACGTCCCAG 59.734 66.667 0.00 0.00 0.00 4.45
4345 8383 2.982130 CTCCCTTCACGTCCCAGG 59.018 66.667 0.00 0.00 0.00 4.45
4347 8385 3.717294 CCCTTCACGTCCCAGGGG 61.717 72.222 5.33 0.92 43.47 4.79
4348 8386 4.410400 CCTTCACGTCCCAGGGGC 62.410 72.222 5.33 1.36 34.68 5.80
4349 8387 4.410400 CTTCACGTCCCAGGGGCC 62.410 72.222 3.81 0.00 34.68 5.80
4353 8391 4.326227 ACGTCCCAGGGGCCACTA 62.326 66.667 7.53 0.00 34.68 2.74
4354 8392 3.006728 CGTCCCAGGGGCCACTAA 61.007 66.667 7.53 0.00 34.68 2.24
4374 8412 1.008194 CTGACCGTTGTTCCGACGA 60.008 57.895 5.61 0.00 43.17 4.20
4375 8413 1.002250 CTGACCGTTGTTCCGACGAG 61.002 60.000 5.61 0.00 43.17 4.18
4378 8416 2.019951 CCGTTGTTCCGACGAGTGG 61.020 63.158 5.61 0.00 43.17 4.00
4379 8417 2.654912 CGTTGTTCCGACGAGTGGC 61.655 63.158 0.00 0.00 43.17 5.01
4380 8418 2.029964 TTGTTCCGACGAGTGGCC 59.970 61.111 0.00 0.00 0.00 5.36
4408 8529 3.252974 AGGATGATGTCAGGTTTCGAC 57.747 47.619 0.00 0.00 0.00 4.20
4409 8530 2.567169 AGGATGATGTCAGGTTTCGACA 59.433 45.455 0.00 0.00 46.77 4.35
4411 8532 3.125316 GGATGATGTCAGGTTTCGACAAC 59.875 47.826 0.00 0.00 45.91 3.32
4445 8594 6.467047 GTGTAATTGAACATTGCTCAGAATCG 59.533 38.462 0.00 0.00 0.00 3.34
4450 8599 4.152938 TGAACATTGCTCAGAATCGAACTG 59.847 41.667 14.21 14.21 36.80 3.16
4451 8600 3.930336 ACATTGCTCAGAATCGAACTGA 58.070 40.909 19.43 19.43 41.26 3.41
4452 8601 4.318332 ACATTGCTCAGAATCGAACTGAA 58.682 39.130 20.45 10.85 42.58 3.02
4455 8604 5.536554 TTGCTCAGAATCGAACTGAATTC 57.463 39.130 20.45 14.67 42.58 2.17
4456 8605 4.825422 TGCTCAGAATCGAACTGAATTCT 58.175 39.130 20.45 8.55 42.58 2.40
4457 8606 5.240891 TGCTCAGAATCGAACTGAATTCTT 58.759 37.500 20.45 0.00 42.58 2.52
4458 8607 5.121298 TGCTCAGAATCGAACTGAATTCTTG 59.879 40.000 20.45 12.22 42.58 3.02
4459 8608 5.349817 GCTCAGAATCGAACTGAATTCTTGA 59.650 40.000 20.45 9.88 42.58 3.02
4604 8939 3.827625 TGTGGATTTGCGGTATTTTTCG 58.172 40.909 0.00 0.00 0.00 3.46
4621 8956 9.562583 GTATTTTTCGTTAAATGCCATACTTGA 57.437 29.630 7.45 0.00 0.00 3.02
4675 9010 4.025015 AGCTGCATCATGAACGAAATTC 57.975 40.909 0.00 0.00 37.88 2.17
4692 9027 1.622607 TTCGCCCATACACCTGAGGG 61.623 60.000 2.38 0.00 44.37 4.30
4697 9034 0.389391 CCATACACCTGAGGGCTACG 59.611 60.000 2.38 0.00 35.63 3.51
4733 9070 5.723672 TGATAAGGGAAGATGATCGTACC 57.276 43.478 0.90 0.90 0.00 3.34
4744 9081 4.817464 AGATGATCGTACCACTGAGAGTAC 59.183 45.833 7.25 7.25 36.35 2.73
4768 9105 1.229428 CACCTATATGTGCTTGGGCG 58.771 55.000 0.00 0.00 42.25 6.13
4780 9117 1.651240 CTTGGGCGTCAATGAGCAGG 61.651 60.000 6.92 0.00 34.45 4.85
4895 9235 3.487372 ACTAGTTTCCAAGAACCTTGCC 58.513 45.455 0.00 0.00 0.00 4.52
4898 9238 1.341209 GTTTCCAAGAACCTTGCCCAG 59.659 52.381 1.39 0.00 0.00 4.45
4903 9243 2.517959 CAAGAACCTTGCCCAGAATCA 58.482 47.619 0.00 0.00 0.00 2.57
4908 9248 3.463048 ACCTTGCCCAGAATCATTTCT 57.537 42.857 0.00 0.00 43.09 2.52
4930 9270 7.916914 TCTACAAAGTTCTTAATAGGTTGCC 57.083 36.000 0.00 0.00 0.00 4.52
4931 9271 5.977489 ACAAAGTTCTTAATAGGTTGCCC 57.023 39.130 0.00 0.00 0.00 5.36
4932 9272 4.457949 ACAAAGTTCTTAATAGGTTGCCCG 59.542 41.667 0.00 0.00 35.12 6.13
4933 9273 3.994931 AGTTCTTAATAGGTTGCCCGT 57.005 42.857 0.00 0.00 35.12 5.28
4935 9275 3.518303 AGTTCTTAATAGGTTGCCCGTCT 59.482 43.478 0.00 0.00 35.12 4.18
4936 9276 3.536956 TCTTAATAGGTTGCCCGTCTG 57.463 47.619 0.00 0.00 35.12 3.51
4938 9278 4.025360 TCTTAATAGGTTGCCCGTCTGTA 58.975 43.478 0.00 0.00 35.12 2.74
4960 9975 3.004315 ACAAGGAAAACGCCATGTACAAG 59.996 43.478 0.00 0.00 38.03 3.16
5047 10062 2.768253 TTCAGTCAATGCGGATGAGT 57.232 45.000 0.00 0.00 0.00 3.41
5048 10063 3.885724 TTCAGTCAATGCGGATGAGTA 57.114 42.857 0.00 0.00 0.00 2.59
5049 10064 3.443099 TCAGTCAATGCGGATGAGTAG 57.557 47.619 0.00 0.00 0.00 2.57
5050 10065 3.023832 TCAGTCAATGCGGATGAGTAGA 58.976 45.455 0.00 0.00 0.00 2.59
5051 10066 3.447229 TCAGTCAATGCGGATGAGTAGAA 59.553 43.478 0.00 0.00 0.00 2.10
5052 10067 4.081697 TCAGTCAATGCGGATGAGTAGAAA 60.082 41.667 0.00 0.00 0.00 2.52
5053 10068 4.033358 CAGTCAATGCGGATGAGTAGAAAC 59.967 45.833 0.00 0.00 0.00 2.78
5054 10069 3.932710 GTCAATGCGGATGAGTAGAAACA 59.067 43.478 0.00 0.00 0.00 2.83
5055 10070 4.572389 GTCAATGCGGATGAGTAGAAACAT 59.428 41.667 0.00 0.00 0.00 2.71
5056 10071 4.571984 TCAATGCGGATGAGTAGAAACATG 59.428 41.667 0.00 0.00 0.00 3.21
5057 10072 2.279741 TGCGGATGAGTAGAAACATGC 58.720 47.619 0.00 0.00 0.00 4.06
5058 10073 2.093500 TGCGGATGAGTAGAAACATGCT 60.093 45.455 0.00 0.00 33.78 3.79
5059 10074 2.939103 GCGGATGAGTAGAAACATGCTT 59.061 45.455 0.00 0.00 33.78 3.91
5060 10075 3.242543 GCGGATGAGTAGAAACATGCTTG 60.243 47.826 0.00 0.00 33.78 4.01
5061 10076 3.935203 CGGATGAGTAGAAACATGCTTGT 59.065 43.478 0.00 0.00 37.82 3.16
5063 10078 5.634896 GGATGAGTAGAAACATGCTTGTTG 58.365 41.667 17.71 0.00 45.30 3.33
5064 10079 4.488126 TGAGTAGAAACATGCTTGTTGC 57.512 40.909 17.71 15.96 45.30 4.17
5068 10083 1.855513 GAAACATGCTTGTTGCTGCA 58.144 45.000 17.71 0.00 45.30 4.41
5069 10084 1.523934 GAAACATGCTTGTTGCTGCAC 59.476 47.619 17.71 0.00 45.30 4.57
5070 10085 0.460722 AACATGCTTGTTGCTGCACA 59.539 45.000 16.45 0.90 44.36 4.57
5071 10086 0.677288 ACATGCTTGTTGCTGCACAT 59.323 45.000 0.00 0.00 42.26 3.21
5072 10087 1.069513 ACATGCTTGTTGCTGCACATT 59.930 42.857 0.00 0.00 42.26 2.71
5073 10088 1.724623 CATGCTTGTTGCTGCACATTC 59.275 47.619 0.00 0.47 42.26 2.67
5074 10089 0.745468 TGCTTGTTGCTGCACATTCA 59.255 45.000 0.00 2.92 43.37 2.57
5075 10090 1.269361 TGCTTGTTGCTGCACATTCAG 60.269 47.619 0.00 0.49 43.37 3.02
5076 10091 1.001048 GCTTGTTGCTGCACATTCAGA 60.001 47.619 0.00 0.00 38.95 3.27
5077 10092 2.658285 CTTGTTGCTGCACATTCAGAC 58.342 47.619 0.00 0.00 36.19 3.51
5078 10093 1.677942 TGTTGCTGCACATTCAGACA 58.322 45.000 0.00 0.00 36.19 3.41
5079 10094 1.334556 TGTTGCTGCACATTCAGACAC 59.665 47.619 0.00 0.00 36.19 3.67
5080 10095 1.605710 GTTGCTGCACATTCAGACACT 59.394 47.619 0.00 0.00 36.19 3.55
5081 10096 2.807967 GTTGCTGCACATTCAGACACTA 59.192 45.455 0.00 0.00 36.19 2.74
5082 10097 2.691927 TGCTGCACATTCAGACACTAG 58.308 47.619 0.00 0.00 36.19 2.57
5083 10098 2.299867 TGCTGCACATTCAGACACTAGA 59.700 45.455 0.00 0.00 36.19 2.43
5084 10099 3.244181 TGCTGCACATTCAGACACTAGAA 60.244 43.478 0.00 0.00 36.19 2.10
5085 10100 3.748048 GCTGCACATTCAGACACTAGAAA 59.252 43.478 0.00 0.00 36.19 2.52
5086 10101 4.377841 GCTGCACATTCAGACACTAGAAAC 60.378 45.833 0.00 0.00 36.19 2.78
5087 10102 3.740832 TGCACATTCAGACACTAGAAACG 59.259 43.478 0.00 0.00 0.00 3.60
5088 10103 3.987868 GCACATTCAGACACTAGAAACGA 59.012 43.478 0.00 0.00 0.00 3.85
5089 10104 4.090642 GCACATTCAGACACTAGAAACGAG 59.909 45.833 0.00 0.00 0.00 4.18
5090 10105 5.461526 CACATTCAGACACTAGAAACGAGA 58.538 41.667 0.00 0.00 0.00 4.04
5091 10106 5.570973 CACATTCAGACACTAGAAACGAGAG 59.429 44.000 0.00 0.00 0.00 3.20
5092 10107 4.768130 TTCAGACACTAGAAACGAGAGG 57.232 45.455 0.00 0.00 0.00 3.69
5093 10108 4.017177 TCAGACACTAGAAACGAGAGGA 57.983 45.455 0.00 0.00 0.00 3.71
5094 10109 4.395625 TCAGACACTAGAAACGAGAGGAA 58.604 43.478 0.00 0.00 0.00 3.36
5095 10110 4.456222 TCAGACACTAGAAACGAGAGGAAG 59.544 45.833 0.00 0.00 0.00 3.46
5096 10111 4.456222 CAGACACTAGAAACGAGAGGAAGA 59.544 45.833 0.00 0.00 0.00 2.87
5097 10112 5.048643 CAGACACTAGAAACGAGAGGAAGAA 60.049 44.000 0.00 0.00 0.00 2.52
5098 10113 5.712917 AGACACTAGAAACGAGAGGAAGAAT 59.287 40.000 0.00 0.00 0.00 2.40
5099 10114 5.715070 ACACTAGAAACGAGAGGAAGAATG 58.285 41.667 0.00 0.00 0.00 2.67
5100 10115 5.105752 CACTAGAAACGAGAGGAAGAATGG 58.894 45.833 0.00 0.00 0.00 3.16
5101 10116 2.979240 AGAAACGAGAGGAAGAATGGC 58.021 47.619 0.00 0.00 0.00 4.40
5102 10117 1.661112 GAAACGAGAGGAAGAATGGCG 59.339 52.381 0.00 0.00 0.00 5.69
5103 10118 0.608640 AACGAGAGGAAGAATGGCGT 59.391 50.000 0.00 0.00 0.00 5.68
5104 10119 0.108615 ACGAGAGGAAGAATGGCGTG 60.109 55.000 0.00 0.00 0.00 5.34
5105 10120 0.108615 CGAGAGGAAGAATGGCGTGT 60.109 55.000 0.00 0.00 0.00 4.49
5106 10121 1.134367 CGAGAGGAAGAATGGCGTGTA 59.866 52.381 0.00 0.00 0.00 2.90
5107 10122 2.796383 CGAGAGGAAGAATGGCGTGTAG 60.796 54.545 0.00 0.00 0.00 2.74
5119 10134 3.472263 CGTGTAGCAAAAACCTGGC 57.528 52.632 0.00 0.00 0.00 4.85
5120 10135 0.665835 CGTGTAGCAAAAACCTGGCA 59.334 50.000 0.00 0.00 0.00 4.92
5121 10136 1.066303 CGTGTAGCAAAAACCTGGCAA 59.934 47.619 0.00 0.00 0.00 4.52
5122 10137 2.288152 CGTGTAGCAAAAACCTGGCAAT 60.288 45.455 0.00 0.00 0.00 3.56
5123 10138 3.059166 GTGTAGCAAAAACCTGGCAATG 58.941 45.455 0.00 0.00 0.00 2.82
5124 10139 2.961741 TGTAGCAAAAACCTGGCAATGA 59.038 40.909 0.00 0.00 0.00 2.57
5125 10140 3.577848 TGTAGCAAAAACCTGGCAATGAT 59.422 39.130 0.00 0.00 0.00 2.45
5126 10141 3.323751 AGCAAAAACCTGGCAATGATC 57.676 42.857 0.00 0.00 0.00 2.92
5127 10142 2.901839 AGCAAAAACCTGGCAATGATCT 59.098 40.909 0.00 0.00 0.00 2.75
5128 10143 2.997986 GCAAAAACCTGGCAATGATCTG 59.002 45.455 0.00 0.00 0.00 2.90
5129 10144 3.555586 GCAAAAACCTGGCAATGATCTGT 60.556 43.478 0.00 0.00 0.00 3.41
5130 10145 4.634199 CAAAAACCTGGCAATGATCTGTT 58.366 39.130 0.00 0.00 0.00 3.16
5131 10146 4.525912 AAAACCTGGCAATGATCTGTTC 57.474 40.909 0.00 0.00 0.00 3.18
5132 10147 2.885135 ACCTGGCAATGATCTGTTCA 57.115 45.000 0.00 0.00 39.12 3.18
5134 10149 4.508551 ACCTGGCAATGATCTGTTCATA 57.491 40.909 1.87 0.00 44.51 2.15
5135 10150 4.458397 ACCTGGCAATGATCTGTTCATAG 58.542 43.478 1.87 0.00 44.51 2.23
5136 10151 3.819337 CCTGGCAATGATCTGTTCATAGG 59.181 47.826 1.87 2.21 44.51 2.57
5137 10152 4.458397 CTGGCAATGATCTGTTCATAGGT 58.542 43.478 1.87 0.00 44.51 3.08
5138 10153 4.858850 TGGCAATGATCTGTTCATAGGTT 58.141 39.130 1.87 0.00 44.51 3.50
5139 10154 4.641541 TGGCAATGATCTGTTCATAGGTTG 59.358 41.667 1.87 0.00 44.51 3.77
5140 10155 4.498682 GGCAATGATCTGTTCATAGGTTGC 60.499 45.833 12.82 12.82 44.51 4.17
5141 10156 4.096833 GCAATGATCTGTTCATAGGTTGCA 59.903 41.667 14.94 0.00 44.51 4.08
5142 10157 5.221185 GCAATGATCTGTTCATAGGTTGCAT 60.221 40.000 14.94 0.00 44.51 3.96
5143 10158 6.436261 CAATGATCTGTTCATAGGTTGCATC 58.564 40.000 1.87 0.00 44.51 3.91
5144 10159 5.101648 TGATCTGTTCATAGGTTGCATCA 57.898 39.130 0.00 0.00 0.00 3.07
5145 10160 4.877823 TGATCTGTTCATAGGTTGCATCAC 59.122 41.667 0.00 0.00 0.00 3.06
5146 10161 4.284829 TCTGTTCATAGGTTGCATCACA 57.715 40.909 0.00 0.00 0.00 3.58
5147 10162 4.847198 TCTGTTCATAGGTTGCATCACAT 58.153 39.130 0.00 0.00 0.00 3.21
5148 10163 4.637091 TCTGTTCATAGGTTGCATCACATG 59.363 41.667 0.00 0.00 0.00 3.21
5163 10178 5.701855 CATCACATGCATACACTGAAAACA 58.298 37.500 0.00 0.00 0.00 2.83
5164 10179 5.764487 TCACATGCATACACTGAAAACAA 57.236 34.783 0.00 0.00 0.00 2.83
5165 10180 5.761003 TCACATGCATACACTGAAAACAAG 58.239 37.500 0.00 0.00 0.00 3.16
5166 10181 4.383649 CACATGCATACACTGAAAACAAGC 59.616 41.667 0.00 0.00 0.00 4.01
5167 10182 3.641437 TGCATACACTGAAAACAAGCC 57.359 42.857 0.00 0.00 0.00 4.35
5168 10183 2.031245 TGCATACACTGAAAACAAGCCG 60.031 45.455 0.00 0.00 0.00 5.52
5169 10184 2.668279 GCATACACTGAAAACAAGCCGG 60.668 50.000 0.00 0.00 0.00 6.13
5170 10185 2.335316 TACACTGAAAACAAGCCGGT 57.665 45.000 1.90 0.00 0.00 5.28
5171 10186 1.470051 ACACTGAAAACAAGCCGGTT 58.530 45.000 1.90 0.00 0.00 4.44
5172 10187 1.134175 ACACTGAAAACAAGCCGGTTG 59.866 47.619 1.90 8.78 42.48 3.77
5173 10188 0.102300 ACTGAAAACAAGCCGGTTGC 59.898 50.000 10.23 0.00 40.15 4.17
5182 10197 3.827634 GCCGGTTGCTCCAATAGG 58.172 61.111 1.90 0.00 36.87 2.57
5183 10198 1.223487 GCCGGTTGCTCCAATAGGA 59.777 57.895 1.90 0.00 43.21 2.94
5184 10199 0.393808 GCCGGTTGCTCCAATAGGAA 60.394 55.000 1.90 0.00 45.19 3.36
5185 10200 1.668419 CCGGTTGCTCCAATAGGAAG 58.332 55.000 0.00 0.00 45.19 3.46
5186 10201 1.668419 CGGTTGCTCCAATAGGAAGG 58.332 55.000 0.00 0.00 45.19 3.46
5187 10202 1.747206 CGGTTGCTCCAATAGGAAGGG 60.747 57.143 0.00 0.00 45.19 3.95
5188 10203 1.564348 GGTTGCTCCAATAGGAAGGGA 59.436 52.381 0.00 0.00 45.19 4.20
5189 10204 2.025321 GGTTGCTCCAATAGGAAGGGAA 60.025 50.000 0.00 0.00 45.19 3.97
5190 10205 3.282885 GTTGCTCCAATAGGAAGGGAAG 58.717 50.000 0.00 0.00 45.19 3.46
5191 10206 2.845659 TGCTCCAATAGGAAGGGAAGA 58.154 47.619 0.00 0.00 45.19 2.87
5192 10207 2.774234 TGCTCCAATAGGAAGGGAAGAG 59.226 50.000 0.00 0.00 45.19 2.85
5193 10208 2.105649 GCTCCAATAGGAAGGGAAGAGG 59.894 54.545 0.00 0.00 45.19 3.69
5194 10209 2.708325 CTCCAATAGGAAGGGAAGAGGG 59.292 54.545 0.00 0.00 45.19 4.30
5195 10210 1.777272 CCAATAGGAAGGGAAGAGGGG 59.223 57.143 0.00 0.00 36.89 4.79
5196 10211 1.777272 CAATAGGAAGGGAAGAGGGGG 59.223 57.143 0.00 0.00 0.00 5.40
5197 10212 1.340502 ATAGGAAGGGAAGAGGGGGA 58.659 55.000 0.00 0.00 0.00 4.81
5198 10213 1.107317 TAGGAAGGGAAGAGGGGGAA 58.893 55.000 0.00 0.00 0.00 3.97
5199 10214 0.253394 AGGAAGGGAAGAGGGGGAAG 60.253 60.000 0.00 0.00 0.00 3.46
5200 10215 1.282653 GGAAGGGAAGAGGGGGAAGG 61.283 65.000 0.00 0.00 0.00 3.46
5201 10216 1.230314 AAGGGAAGAGGGGGAAGGG 60.230 63.158 0.00 0.00 0.00 3.95
5202 10217 2.696504 GGGAAGAGGGGGAAGGGG 60.697 72.222 0.00 0.00 0.00 4.79
5203 10218 2.696504 GGAAGAGGGGGAAGGGGG 60.697 72.222 0.00 0.00 0.00 5.40
5226 10241 5.654901 GGATCCTATTCCCTCTTTCCTTT 57.345 43.478 3.84 0.00 0.00 3.11
5227 10242 5.626142 GGATCCTATTCCCTCTTTCCTTTC 58.374 45.833 3.84 0.00 0.00 2.62
5228 10243 5.456907 GGATCCTATTCCCTCTTTCCTTTCC 60.457 48.000 3.84 0.00 0.00 3.13
5229 10244 4.711055 TCCTATTCCCTCTTTCCTTTCCT 58.289 43.478 0.00 0.00 0.00 3.36
5230 10245 4.722279 TCCTATTCCCTCTTTCCTTTCCTC 59.278 45.833 0.00 0.00 0.00 3.71
5231 10246 4.141367 CCTATTCCCTCTTTCCTTTCCTCC 60.141 50.000 0.00 0.00 0.00 4.30
5232 10247 2.743131 TCCCTCTTTCCTTTCCTCCT 57.257 50.000 0.00 0.00 0.00 3.69
5233 10248 3.005529 TCCCTCTTTCCTTTCCTCCTT 57.994 47.619 0.00 0.00 0.00 3.36
5234 10249 2.913617 TCCCTCTTTCCTTTCCTCCTTC 59.086 50.000 0.00 0.00 0.00 3.46
5235 10250 2.025793 CCCTCTTTCCTTTCCTCCTTCC 60.026 54.545 0.00 0.00 0.00 3.46
5236 10251 2.025793 CCTCTTTCCTTTCCTCCTTCCC 60.026 54.545 0.00 0.00 0.00 3.97
5237 10252 1.993301 TCTTTCCTTTCCTCCTTCCCC 59.007 52.381 0.00 0.00 0.00 4.81
5238 10253 1.996291 CTTTCCTTTCCTCCTTCCCCT 59.004 52.381 0.00 0.00 0.00 4.79
5239 10254 2.149521 TTCCTTTCCTCCTTCCCCTT 57.850 50.000 0.00 0.00 0.00 3.95
5240 10255 2.149521 TCCTTTCCTCCTTCCCCTTT 57.850 50.000 0.00 0.00 0.00 3.11
5241 10256 1.993301 TCCTTTCCTCCTTCCCCTTTC 59.007 52.381 0.00 0.00 0.00 2.62
5242 10257 1.006043 CCTTTCCTCCTTCCCCTTTCC 59.994 57.143 0.00 0.00 0.00 3.13
5243 10258 1.996291 CTTTCCTCCTTCCCCTTTCCT 59.004 52.381 0.00 0.00 0.00 3.36
5244 10259 2.149521 TTCCTCCTTCCCCTTTCCTT 57.850 50.000 0.00 0.00 0.00 3.36
5245 10260 1.670059 TCCTCCTTCCCCTTTCCTTC 58.330 55.000 0.00 0.00 0.00 3.46
5246 10261 1.154434 TCCTCCTTCCCCTTTCCTTCT 59.846 52.381 0.00 0.00 0.00 2.85
5247 10262 1.562008 CCTCCTTCCCCTTTCCTTCTC 59.438 57.143 0.00 0.00 0.00 2.87
5248 10263 1.562008 CTCCTTCCCCTTTCCTTCTCC 59.438 57.143 0.00 0.00 0.00 3.71
5249 10264 1.132201 TCCTTCCCCTTTCCTTCTCCA 60.132 52.381 0.00 0.00 0.00 3.86
5250 10265 1.710809 CCTTCCCCTTTCCTTCTCCAA 59.289 52.381 0.00 0.00 0.00 3.53
5251 10266 2.313041 CCTTCCCCTTTCCTTCTCCAAT 59.687 50.000 0.00 0.00 0.00 3.16
5252 10267 3.245766 CCTTCCCCTTTCCTTCTCCAATT 60.246 47.826 0.00 0.00 0.00 2.32
5253 10268 4.420206 CTTCCCCTTTCCTTCTCCAATTT 58.580 43.478 0.00 0.00 0.00 1.82
5254 10269 3.778265 TCCCCTTTCCTTCTCCAATTTG 58.222 45.455 0.00 0.00 0.00 2.32
5255 10270 2.833943 CCCCTTTCCTTCTCCAATTTGG 59.166 50.000 9.28 9.28 39.43 3.28
5256 10271 3.510459 CCCTTTCCTTCTCCAATTTGGT 58.490 45.455 14.98 0.00 39.03 3.67
5257 10272 3.511540 CCCTTTCCTTCTCCAATTTGGTC 59.488 47.826 14.98 0.00 39.03 4.02
5258 10273 4.151883 CCTTTCCTTCTCCAATTTGGTCA 58.848 43.478 14.98 0.50 39.03 4.02
5259 10274 4.219288 CCTTTCCTTCTCCAATTTGGTCAG 59.781 45.833 14.98 6.57 39.03 3.51
5260 10275 2.795329 TCCTTCTCCAATTTGGTCAGC 58.205 47.619 14.98 0.00 39.03 4.26
5261 10276 1.821136 CCTTCTCCAATTTGGTCAGCC 59.179 52.381 14.98 0.00 39.03 4.85
5262 10277 1.821136 CTTCTCCAATTTGGTCAGCCC 59.179 52.381 14.98 0.00 39.03 5.19
5263 10278 0.776810 TCTCCAATTTGGTCAGCCCA 59.223 50.000 14.98 0.00 43.27 5.36
5264 10279 1.358787 TCTCCAATTTGGTCAGCCCAT 59.641 47.619 14.98 0.00 44.74 4.00
5265 10280 2.580322 TCTCCAATTTGGTCAGCCCATA 59.420 45.455 14.98 0.00 44.74 2.74
5266 10281 3.205056 TCTCCAATTTGGTCAGCCCATAT 59.795 43.478 14.98 0.00 44.74 1.78
5267 10282 3.298619 TCCAATTTGGTCAGCCCATATG 58.701 45.455 14.98 0.00 44.74 1.78
5268 10283 2.366266 CCAATTTGGTCAGCCCATATGG 59.634 50.000 15.41 15.41 44.74 2.74
5269 10284 5.370737 CCAATTTGGTCAGCCCATATGGC 62.371 52.174 16.97 11.75 46.71 4.40
5293 10308 4.974721 CCGCACCAGCCCCTTTGT 62.975 66.667 0.00 0.00 37.52 2.83
5294 10309 3.673484 CGCACCAGCCCCTTTGTG 61.673 66.667 0.00 0.00 37.52 3.33
5295 10310 3.305516 GCACCAGCCCCTTTGTGG 61.306 66.667 0.00 0.00 37.38 4.17
5301 10316 3.305516 GCCCCTTTGTGGCTGGTG 61.306 66.667 0.00 0.00 45.70 4.17
5302 10317 2.198426 CCCCTTTGTGGCTGGTGT 59.802 61.111 0.00 0.00 0.00 4.16
5303 10318 2.202395 CCCCTTTGTGGCTGGTGTG 61.202 63.158 0.00 0.00 0.00 3.82
5304 10319 1.455587 CCCTTTGTGGCTGGTGTGT 60.456 57.895 0.00 0.00 0.00 3.72
5305 10320 1.042559 CCCTTTGTGGCTGGTGTGTT 61.043 55.000 0.00 0.00 0.00 3.32
5306 10321 0.823460 CCTTTGTGGCTGGTGTGTTT 59.177 50.000 0.00 0.00 0.00 2.83
5307 10322 1.202405 CCTTTGTGGCTGGTGTGTTTC 60.202 52.381 0.00 0.00 0.00 2.78
5308 10323 0.820871 TTTGTGGCTGGTGTGTTTCC 59.179 50.000 0.00 0.00 0.00 3.13
5309 10324 1.040339 TTGTGGCTGGTGTGTTTCCC 61.040 55.000 0.00 0.00 0.00 3.97
5310 10325 1.152756 GTGGCTGGTGTGTTTCCCT 60.153 57.895 0.00 0.00 0.00 4.20
5311 10326 0.755327 GTGGCTGGTGTGTTTCCCTT 60.755 55.000 0.00 0.00 0.00 3.95
5312 10327 0.467290 TGGCTGGTGTGTTTCCCTTC 60.467 55.000 0.00 0.00 0.00 3.46
5313 10328 0.178990 GGCTGGTGTGTTTCCCTTCT 60.179 55.000 0.00 0.00 0.00 2.85
5314 10329 1.692411 GCTGGTGTGTTTCCCTTCTT 58.308 50.000 0.00 0.00 0.00 2.52
5315 10330 1.338020 GCTGGTGTGTTTCCCTTCTTG 59.662 52.381 0.00 0.00 0.00 3.02
5316 10331 1.956477 CTGGTGTGTTTCCCTTCTTGG 59.044 52.381 0.00 0.00 0.00 3.61
5317 10332 0.673985 GGTGTGTTTCCCTTCTTGGC 59.326 55.000 0.00 0.00 0.00 4.52
5318 10333 0.673985 GTGTGTTTCCCTTCTTGGCC 59.326 55.000 0.00 0.00 0.00 5.36
5319 10334 0.469144 TGTGTTTCCCTTCTTGGCCC 60.469 55.000 0.00 0.00 0.00 5.80
5320 10335 0.469144 GTGTTTCCCTTCTTGGCCCA 60.469 55.000 0.00 0.00 0.00 5.36
5321 10336 0.486879 TGTTTCCCTTCTTGGCCCAT 59.513 50.000 0.00 0.00 0.00 4.00
5322 10337 1.713647 TGTTTCCCTTCTTGGCCCATA 59.286 47.619 0.00 0.00 0.00 2.74
5323 10338 2.110899 TGTTTCCCTTCTTGGCCCATAA 59.889 45.455 0.00 0.00 0.00 1.90
5324 10339 2.760650 GTTTCCCTTCTTGGCCCATAAG 59.239 50.000 0.00 0.00 0.00 1.73
5325 10340 0.926293 TCCCTTCTTGGCCCATAAGG 59.074 55.000 15.38 15.38 38.58 2.69
5339 10354 3.259123 CCCATAAGGCCCATATCTTTTGC 59.741 47.826 0.00 0.00 0.00 3.68
5340 10355 3.259123 CCATAAGGCCCATATCTTTTGCC 59.741 47.826 0.00 0.00 42.48 4.52
5343 10358 1.043022 GGCCCATATCTTTTGCCTGG 58.957 55.000 0.00 0.00 39.05 4.45
5344 10359 1.411501 GGCCCATATCTTTTGCCTGGA 60.412 52.381 0.00 0.00 39.05 3.86
5345 10360 2.387757 GCCCATATCTTTTGCCTGGAA 58.612 47.619 0.00 0.00 0.00 3.53
5346 10361 2.101415 GCCCATATCTTTTGCCTGGAAC 59.899 50.000 0.00 0.00 0.00 3.62
5347 10362 2.695147 CCCATATCTTTTGCCTGGAACC 59.305 50.000 0.00 0.00 0.00 3.62
5348 10363 2.695147 CCATATCTTTTGCCTGGAACCC 59.305 50.000 0.00 0.00 0.00 4.11
5349 10364 3.628257 CCATATCTTTTGCCTGGAACCCT 60.628 47.826 0.00 0.00 0.00 4.34
5350 10365 2.702270 ATCTTTTGCCTGGAACCCTT 57.298 45.000 0.00 0.00 0.00 3.95
5351 10366 2.470057 TCTTTTGCCTGGAACCCTTT 57.530 45.000 0.00 0.00 0.00 3.11
5352 10367 2.758130 TCTTTTGCCTGGAACCCTTTT 58.242 42.857 0.00 0.00 0.00 2.27
5353 10368 2.698274 TCTTTTGCCTGGAACCCTTTTC 59.302 45.455 0.00 0.00 0.00 2.29
5354 10369 1.036707 TTTGCCTGGAACCCTTTTCG 58.963 50.000 0.00 0.00 0.00 3.46
5355 10370 0.825840 TTGCCTGGAACCCTTTTCGG 60.826 55.000 0.00 0.00 0.00 4.30
5356 10371 1.228459 GCCTGGAACCCTTTTCGGT 60.228 57.895 0.00 0.00 37.93 4.69
5357 10372 1.524008 GCCTGGAACCCTTTTCGGTG 61.524 60.000 0.00 0.00 35.83 4.94
5358 10373 0.179001 CCTGGAACCCTTTTCGGTGT 60.179 55.000 0.00 0.00 35.83 4.16
5359 10374 1.687563 CTGGAACCCTTTTCGGTGTT 58.312 50.000 0.00 0.00 35.83 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 3601 9.535878 AACGTTGGTATGTTCAAAACAAATTAT 57.464 25.926 0.00 0.00 45.86 1.28
443 3970 2.354704 CCCACTCCACGTACAACATCAT 60.355 50.000 0.00 0.00 0.00 2.45
449 3976 2.745037 GGCCCACTCCACGTACAA 59.255 61.111 0.00 0.00 0.00 2.41
500 4027 4.461198 AGAATTTTACTAATCCCAGCCCG 58.539 43.478 0.00 0.00 0.00 6.13
568 4095 7.065563 TGGATGAATTTTGGCCGAAATTAATTG 59.934 33.333 34.09 0.00 38.85 2.32
608 4137 3.837146 TGGACCGGTTTGTACTAATACCA 59.163 43.478 9.42 3.43 0.00 3.25
667 4196 2.243810 GTGTGGGCTATTTTGGACCAA 58.756 47.619 1.69 1.69 44.30 3.67
696 4225 6.431722 AGGTTGGTTGCAGTTTATATACCAT 58.568 36.000 3.58 0.00 35.74 3.55
757 4286 4.522975 GAGATTTGGGGGCGGGGG 62.523 72.222 0.00 0.00 0.00 5.40
758 4287 4.522975 GGAGATTTGGGGGCGGGG 62.523 72.222 0.00 0.00 0.00 5.73
759 4288 3.738481 TGGAGATTTGGGGGCGGG 61.738 66.667 0.00 0.00 0.00 6.13
760 4289 2.440247 GTGGAGATTTGGGGGCGG 60.440 66.667 0.00 0.00 0.00 6.13
761 4290 2.440247 GGTGGAGATTTGGGGGCG 60.440 66.667 0.00 0.00 0.00 6.13
762 4291 2.042944 GGGTGGAGATTTGGGGGC 60.043 66.667 0.00 0.00 0.00 5.80
850 4387 1.110442 CACCTGGAGCACTAGAGGAG 58.890 60.000 0.00 0.00 0.00 3.69
851 4388 0.972983 GCACCTGGAGCACTAGAGGA 60.973 60.000 11.41 0.00 0.00 3.71
852 4389 1.519719 GCACCTGGAGCACTAGAGG 59.480 63.158 11.41 0.00 0.00 3.69
856 4401 1.468506 TTGACGCACCTGGAGCACTA 61.469 55.000 16.29 4.05 0.00 2.74
906 4451 1.840635 GCAGAATGGGGAGGAGTACTT 59.159 52.381 0.00 0.00 35.86 2.24
909 4454 1.292242 AGAGCAGAATGGGGAGGAGTA 59.708 52.381 0.00 0.00 35.86 2.59
925 4470 1.377856 GCCCTCCACAGGAAAGAGC 60.378 63.158 0.00 0.00 43.65 4.09
934 4479 2.429930 CAACCTTCGCCCTCCACA 59.570 61.111 0.00 0.00 0.00 4.17
935 4480 1.966451 CACAACCTTCGCCCTCCAC 60.966 63.158 0.00 0.00 0.00 4.02
952 4497 2.910479 ACGGAGCAGTGACGGTCA 60.910 61.111 6.76 6.76 35.06 4.02
1084 4637 2.596346 TGCCAAAGAAGGAAAGATGCA 58.404 42.857 0.00 0.00 0.00 3.96
1124 4677 9.368674 CCACATATGAATTTTTGTGCAGATTAA 57.631 29.630 10.38 0.00 38.47 1.40
1150 4703 0.875059 CGAAGGAAAGGTGAACCAGC 59.125 55.000 1.62 0.00 38.89 4.85
1407 4961 7.709613 GGAGTACGGTCAGTCAATATAAATTGT 59.290 37.037 0.00 0.00 42.66 2.71
1994 5555 2.203098 CGACGGTGGGTGGTTGTT 60.203 61.111 0.00 0.00 0.00 2.83
2230 5795 1.587547 TTGATTAGTGCGTGTGTGCA 58.412 45.000 0.00 0.00 43.95 4.57
2478 6046 1.067142 TGTAGTCGTGAGTTGGCCATC 60.067 52.381 6.09 5.81 0.00 3.51
2706 6282 8.185506 TGTTAACTCAACTGTAGATAAGGACA 57.814 34.615 7.22 0.00 38.05 4.02
3627 7215 2.139917 GTGCACCACGTGTCTATTTGA 58.860 47.619 15.65 0.00 35.75 2.69
3740 7328 5.132312 GCCTTTCTTCTAATAAGTACCCCCT 59.868 44.000 0.00 0.00 0.00 4.79
3745 7333 6.335777 TCGGTGCCTTTCTTCTAATAAGTAC 58.664 40.000 0.00 0.00 0.00 2.73
3746 7334 6.534475 TCGGTGCCTTTCTTCTAATAAGTA 57.466 37.500 0.00 0.00 0.00 2.24
3747 7335 5.416271 TCGGTGCCTTTCTTCTAATAAGT 57.584 39.130 0.00 0.00 0.00 2.24
3938 7975 6.934083 GGCAAACTAAGAATGAAAATTTCCCA 59.066 34.615 3.00 0.00 0.00 4.37
3956 7993 9.723601 ATACATTTCATACAAAAATGGCAAACT 57.276 25.926 11.86 0.00 44.62 2.66
3991 8028 5.074115 CCTACGGGAAATGGGCAATATTTA 58.926 41.667 0.00 0.00 33.58 1.40
3996 8034 0.755327 GCCTACGGGAAATGGGCAAT 60.755 55.000 0.00 0.00 42.98 3.56
4030 8068 4.559063 CCCTCCAGGAGCATGCGG 62.559 72.222 13.01 7.58 38.24 5.69
4047 8085 2.094659 CACAGTCACGTCATCGCCC 61.095 63.158 0.00 0.00 41.18 6.13
4109 8147 3.083600 CTTGTGACGAATCCGCGGC 62.084 63.158 23.51 5.56 40.45 6.53
4141 8179 1.151668 CTTTCGTGGAAGGAGTGCAG 58.848 55.000 0.00 0.00 29.54 4.41
4247 8285 3.487544 CGAGTAGAGCGATGTCATGTTCA 60.488 47.826 0.00 0.00 0.00 3.18
4248 8286 3.039405 CGAGTAGAGCGATGTCATGTTC 58.961 50.000 0.00 0.00 0.00 3.18
4249 8287 2.223595 CCGAGTAGAGCGATGTCATGTT 60.224 50.000 0.00 0.00 0.00 2.71
4250 8288 1.335182 CCGAGTAGAGCGATGTCATGT 59.665 52.381 0.00 0.00 0.00 3.21
4251 8289 1.604278 TCCGAGTAGAGCGATGTCATG 59.396 52.381 0.00 0.00 0.00 3.07
4252 8290 1.876799 CTCCGAGTAGAGCGATGTCAT 59.123 52.381 0.00 0.00 0.00 3.06
4255 8293 1.301423 GTCTCCGAGTAGAGCGATGT 58.699 55.000 0.00 0.00 33.66 3.06
4261 8299 1.600013 CATGGTCGTCTCCGAGTAGAG 59.400 57.143 0.00 0.00 45.26 2.43
4320 8358 2.183555 GTGAAGGGAGCCGTACGG 59.816 66.667 30.06 30.06 38.57 4.02
4321 8359 2.202570 CGTGAAGGGAGCCGTACG 60.203 66.667 8.69 8.69 0.00 3.67
4324 8362 3.692406 GGACGTGAAGGGAGCCGT 61.692 66.667 0.00 0.00 36.04 5.68
4325 8363 4.452733 GGGACGTGAAGGGAGCCG 62.453 72.222 0.00 0.00 0.00 5.52
4326 8364 3.316573 CTGGGACGTGAAGGGAGCC 62.317 68.421 0.00 0.00 0.00 4.70
4327 8365 2.266055 CTGGGACGTGAAGGGAGC 59.734 66.667 0.00 0.00 0.00 4.70
4328 8366 2.982130 CCTGGGACGTGAAGGGAG 59.018 66.667 0.00 0.00 0.00 4.30
4338 8376 1.001269 GTTTAGTGGCCCCTGGGAC 60.001 63.158 16.20 2.93 45.60 4.46
4339 8377 1.151677 AGTTTAGTGGCCCCTGGGA 60.152 57.895 16.20 0.00 37.50 4.37
4340 8378 1.000896 CAGTTTAGTGGCCCCTGGG 60.001 63.158 5.50 5.50 38.57 4.45
4341 8379 0.322546 GTCAGTTTAGTGGCCCCTGG 60.323 60.000 0.00 0.00 0.00 4.45
4342 8380 0.322546 GGTCAGTTTAGTGGCCCCTG 60.323 60.000 0.00 0.00 36.05 4.45
4343 8381 1.838073 CGGTCAGTTTAGTGGCCCCT 61.838 60.000 0.00 0.00 39.22 4.79
4344 8382 1.376812 CGGTCAGTTTAGTGGCCCC 60.377 63.158 0.00 0.00 39.22 5.80
4345 8383 0.250597 AACGGTCAGTTTAGTGGCCC 60.251 55.000 0.00 0.00 39.22 5.80
4346 8384 0.872388 CAACGGTCAGTTTAGTGGCC 59.128 55.000 0.00 0.00 42.02 5.36
4347 8385 1.589803 ACAACGGTCAGTTTAGTGGC 58.410 50.000 0.00 0.00 42.02 5.01
4348 8386 2.546789 GGAACAACGGTCAGTTTAGTGG 59.453 50.000 1.28 0.00 42.02 4.00
4349 8387 2.220133 CGGAACAACGGTCAGTTTAGTG 59.780 50.000 1.28 0.00 42.02 2.74
4350 8388 2.101249 TCGGAACAACGGTCAGTTTAGT 59.899 45.455 1.28 0.00 42.02 2.24
4351 8389 2.473984 GTCGGAACAACGGTCAGTTTAG 59.526 50.000 1.28 0.33 42.02 1.85
4352 8390 2.472816 GTCGGAACAACGGTCAGTTTA 58.527 47.619 1.28 0.00 42.02 2.01
4353 8391 1.292992 GTCGGAACAACGGTCAGTTT 58.707 50.000 1.28 0.00 42.02 2.66
4354 8392 0.872881 CGTCGGAACAACGGTCAGTT 60.873 55.000 0.00 0.00 45.45 3.16
4374 8412 1.613630 ATCCTTCTCCACGGCCACT 60.614 57.895 2.24 0.00 0.00 4.00
4375 8413 1.450312 CATCCTTCTCCACGGCCAC 60.450 63.158 2.24 0.00 0.00 5.01
4378 8416 0.179000 ACATCATCCTTCTCCACGGC 59.821 55.000 0.00 0.00 0.00 5.68
4379 8417 1.482182 TGACATCATCCTTCTCCACGG 59.518 52.381 0.00 0.00 0.00 4.94
4380 8418 2.482664 CCTGACATCATCCTTCTCCACG 60.483 54.545 0.00 0.00 0.00 4.94
4408 8529 6.431278 TGTTCAATTACACCACAATACGTTG 58.569 36.000 0.00 0.00 41.20 4.10
4409 8530 6.621316 TGTTCAATTACACCACAATACGTT 57.379 33.333 0.00 0.00 0.00 3.99
4411 8532 6.033407 GCAATGTTCAATTACACCACAATACG 59.967 38.462 0.00 0.00 0.00 3.06
4455 8604 8.206325 AGCACAGAGACATATTACATTTCAAG 57.794 34.615 0.00 0.00 0.00 3.02
4456 8605 8.565896 AAGCACAGAGACATATTACATTTCAA 57.434 30.769 0.00 0.00 0.00 2.69
4457 8606 8.565896 AAAGCACAGAGACATATTACATTTCA 57.434 30.769 0.00 0.00 0.00 2.69
4458 8607 9.846248 AAAAAGCACAGAGACATATTACATTTC 57.154 29.630 0.00 0.00 0.00 2.17
4495 8644 7.760340 GGTTTAAACAACCAAATGTGTGTCTTA 59.240 33.333 19.57 0.00 40.03 2.10
4573 8723 3.627123 CCGCAAATCCACATTCAGTATCA 59.373 43.478 0.00 0.00 0.00 2.15
4622 8957 9.349713 TCTTTCAACTGGCTCTCTTAAAAATTA 57.650 29.630 0.00 0.00 0.00 1.40
4675 9010 2.505982 CCCTCAGGTGTATGGGCG 59.494 66.667 0.00 0.00 32.49 6.13
4692 9027 9.651718 CCTTATCAATGTTTCTATTTTCGTAGC 57.348 33.333 0.00 0.00 0.00 3.58
4733 9070 8.851145 ACATATAGGTGTATTGTACTCTCAGTG 58.149 37.037 0.00 0.00 0.00 3.66
4744 9081 4.216257 GCCCAAGCACATATAGGTGTATTG 59.784 45.833 18.02 19.77 40.89 1.90
4768 9105 5.587844 ACTGATCAAATACCTGCTCATTGAC 59.412 40.000 0.00 0.00 33.29 3.18
4927 9267 0.759959 TTTCCTTGTACAGACGGGCA 59.240 50.000 0.00 0.00 0.00 5.36
4929 9269 1.796459 CGTTTTCCTTGTACAGACGGG 59.204 52.381 0.00 0.00 0.00 5.28
4930 9270 1.193874 GCGTTTTCCTTGTACAGACGG 59.806 52.381 0.00 0.00 0.00 4.79
4931 9271 1.193874 GGCGTTTTCCTTGTACAGACG 59.806 52.381 0.00 3.10 0.00 4.18
4932 9272 2.215196 TGGCGTTTTCCTTGTACAGAC 58.785 47.619 0.00 0.00 0.00 3.51
4933 9273 2.623878 TGGCGTTTTCCTTGTACAGA 57.376 45.000 0.00 0.00 0.00 3.41
4935 9275 2.577700 ACATGGCGTTTTCCTTGTACA 58.422 42.857 0.00 0.00 41.12 2.90
4938 9278 2.577700 TGTACATGGCGTTTTCCTTGT 58.422 42.857 0.00 6.57 43.94 3.16
5056 10071 1.001048 TCTGAATGTGCAGCAACAAGC 60.001 47.619 0.00 0.00 46.19 4.01
5057 10072 2.033675 TGTCTGAATGTGCAGCAACAAG 59.966 45.455 0.00 0.00 35.86 3.16
5058 10073 2.022934 TGTCTGAATGTGCAGCAACAA 58.977 42.857 0.00 0.00 35.86 2.83
5059 10074 1.334556 GTGTCTGAATGTGCAGCAACA 59.665 47.619 0.00 0.00 35.86 3.33
5060 10075 1.605710 AGTGTCTGAATGTGCAGCAAC 59.394 47.619 0.00 0.00 35.86 4.17
5061 10076 1.971481 AGTGTCTGAATGTGCAGCAA 58.029 45.000 0.00 0.00 35.86 3.91
5062 10077 2.299867 TCTAGTGTCTGAATGTGCAGCA 59.700 45.455 0.00 0.00 35.86 4.41
5063 10078 2.964740 TCTAGTGTCTGAATGTGCAGC 58.035 47.619 0.00 0.00 35.86 5.25
5064 10079 4.143242 CGTTTCTAGTGTCTGAATGTGCAG 60.143 45.833 0.00 0.00 37.24 4.41
5065 10080 3.740832 CGTTTCTAGTGTCTGAATGTGCA 59.259 43.478 0.00 0.00 0.00 4.57
5066 10081 3.987868 TCGTTTCTAGTGTCTGAATGTGC 59.012 43.478 0.00 0.00 0.00 4.57
5067 10082 5.461526 TCTCGTTTCTAGTGTCTGAATGTG 58.538 41.667 0.00 0.00 0.00 3.21
5068 10083 5.336055 CCTCTCGTTTCTAGTGTCTGAATGT 60.336 44.000 0.00 0.00 0.00 2.71
5069 10084 5.098893 CCTCTCGTTTCTAGTGTCTGAATG 58.901 45.833 0.00 0.00 0.00 2.67
5070 10085 5.010933 TCCTCTCGTTTCTAGTGTCTGAAT 58.989 41.667 0.00 0.00 0.00 2.57
5071 10086 4.395625 TCCTCTCGTTTCTAGTGTCTGAA 58.604 43.478 0.00 0.00 0.00 3.02
5072 10087 4.017177 TCCTCTCGTTTCTAGTGTCTGA 57.983 45.455 0.00 0.00 0.00 3.27
5073 10088 4.456222 TCTTCCTCTCGTTTCTAGTGTCTG 59.544 45.833 0.00 0.00 0.00 3.51
5074 10089 4.653868 TCTTCCTCTCGTTTCTAGTGTCT 58.346 43.478 0.00 0.00 0.00 3.41
5075 10090 5.373981 TTCTTCCTCTCGTTTCTAGTGTC 57.626 43.478 0.00 0.00 0.00 3.67
5076 10091 5.336849 CCATTCTTCCTCTCGTTTCTAGTGT 60.337 44.000 0.00 0.00 0.00 3.55
5077 10092 5.105752 CCATTCTTCCTCTCGTTTCTAGTG 58.894 45.833 0.00 0.00 0.00 2.74
5078 10093 4.382147 GCCATTCTTCCTCTCGTTTCTAGT 60.382 45.833 0.00 0.00 0.00 2.57
5079 10094 4.116238 GCCATTCTTCCTCTCGTTTCTAG 58.884 47.826 0.00 0.00 0.00 2.43
5080 10095 3.428999 CGCCATTCTTCCTCTCGTTTCTA 60.429 47.826 0.00 0.00 0.00 2.10
5081 10096 2.675317 CGCCATTCTTCCTCTCGTTTCT 60.675 50.000 0.00 0.00 0.00 2.52
5082 10097 1.661112 CGCCATTCTTCCTCTCGTTTC 59.339 52.381 0.00 0.00 0.00 2.78
5083 10098 1.002087 ACGCCATTCTTCCTCTCGTTT 59.998 47.619 0.00 0.00 0.00 3.60
5084 10099 0.608640 ACGCCATTCTTCCTCTCGTT 59.391 50.000 0.00 0.00 0.00 3.85
5085 10100 0.108615 CACGCCATTCTTCCTCTCGT 60.109 55.000 0.00 0.00 0.00 4.18
5086 10101 0.108615 ACACGCCATTCTTCCTCTCG 60.109 55.000 0.00 0.00 0.00 4.04
5087 10102 2.815478 CTACACGCCATTCTTCCTCTC 58.185 52.381 0.00 0.00 0.00 3.20
5088 10103 1.134670 GCTACACGCCATTCTTCCTCT 60.135 52.381 0.00 0.00 0.00 3.69
5089 10104 1.291132 GCTACACGCCATTCTTCCTC 58.709 55.000 0.00 0.00 0.00 3.71
5090 10105 0.613260 TGCTACACGCCATTCTTCCT 59.387 50.000 0.00 0.00 38.05 3.36
5091 10106 1.448985 TTGCTACACGCCATTCTTCC 58.551 50.000 0.00 0.00 38.05 3.46
5092 10107 3.552604 TTTTGCTACACGCCATTCTTC 57.447 42.857 0.00 0.00 38.05 2.87
5093 10108 3.552068 GGTTTTTGCTACACGCCATTCTT 60.552 43.478 0.00 0.00 38.05 2.52
5094 10109 2.030274 GGTTTTTGCTACACGCCATTCT 60.030 45.455 0.00 0.00 38.05 2.40
5095 10110 2.030274 AGGTTTTTGCTACACGCCATTC 60.030 45.455 0.00 0.00 38.05 2.67
5096 10111 1.960689 AGGTTTTTGCTACACGCCATT 59.039 42.857 0.00 0.00 38.05 3.16
5097 10112 1.269448 CAGGTTTTTGCTACACGCCAT 59.731 47.619 0.00 0.00 38.05 4.40
5098 10113 0.665835 CAGGTTTTTGCTACACGCCA 59.334 50.000 0.00 0.00 38.05 5.69
5099 10114 0.039527 CCAGGTTTTTGCTACACGCC 60.040 55.000 0.00 0.00 38.05 5.68
5100 10115 0.663269 GCCAGGTTTTTGCTACACGC 60.663 55.000 0.00 0.00 39.77 5.34
5101 10116 0.665835 TGCCAGGTTTTTGCTACACG 59.334 50.000 0.00 0.00 0.00 4.49
5102 10117 2.880963 TTGCCAGGTTTTTGCTACAC 57.119 45.000 0.00 0.00 0.00 2.90
5103 10118 2.961741 TCATTGCCAGGTTTTTGCTACA 59.038 40.909 0.00 0.00 0.00 2.74
5104 10119 3.658757 TCATTGCCAGGTTTTTGCTAC 57.341 42.857 0.00 0.00 0.00 3.58
5105 10120 4.082081 CAGATCATTGCCAGGTTTTTGCTA 60.082 41.667 0.00 0.00 0.00 3.49
5106 10121 2.901839 AGATCATTGCCAGGTTTTTGCT 59.098 40.909 0.00 0.00 0.00 3.91
5107 10122 2.997986 CAGATCATTGCCAGGTTTTTGC 59.002 45.455 0.00 0.00 0.00 3.68
5108 10123 4.261578 ACAGATCATTGCCAGGTTTTTG 57.738 40.909 0.00 0.00 0.00 2.44
5109 10124 4.344679 TGAACAGATCATTGCCAGGTTTTT 59.655 37.500 0.00 0.00 31.50 1.94
5110 10125 3.896888 TGAACAGATCATTGCCAGGTTTT 59.103 39.130 0.00 0.00 31.50 2.43
5111 10126 3.499338 TGAACAGATCATTGCCAGGTTT 58.501 40.909 0.00 0.00 31.50 3.27
5112 10127 3.159213 TGAACAGATCATTGCCAGGTT 57.841 42.857 0.00 0.00 31.50 3.50
5113 10128 2.885135 TGAACAGATCATTGCCAGGT 57.115 45.000 0.00 0.00 31.50 4.00
5114 10129 3.819337 CCTATGAACAGATCATTGCCAGG 59.181 47.826 0.00 0.00 46.85 4.45
5115 10130 4.458397 ACCTATGAACAGATCATTGCCAG 58.542 43.478 0.00 0.00 46.85 4.85
5116 10131 4.508551 ACCTATGAACAGATCATTGCCA 57.491 40.909 0.00 0.00 46.85 4.92
5117 10132 4.498682 GCAACCTATGAACAGATCATTGCC 60.499 45.833 0.00 0.00 46.85 4.52
5118 10133 4.096833 TGCAACCTATGAACAGATCATTGC 59.903 41.667 8.91 8.91 46.85 3.56
5119 10134 5.823209 TGCAACCTATGAACAGATCATTG 57.177 39.130 0.00 0.00 46.85 2.82
5120 10135 6.039047 GTGATGCAACCTATGAACAGATCATT 59.961 38.462 0.00 0.00 46.85 2.57
5122 10137 4.877823 GTGATGCAACCTATGAACAGATCA 59.122 41.667 0.00 0.00 43.67 2.92
5123 10138 4.877823 TGTGATGCAACCTATGAACAGATC 59.122 41.667 0.00 0.00 0.00 2.75
5124 10139 4.847198 TGTGATGCAACCTATGAACAGAT 58.153 39.130 0.00 0.00 0.00 2.90
5125 10140 4.284829 TGTGATGCAACCTATGAACAGA 57.715 40.909 0.00 0.00 0.00 3.41
5126 10141 4.916870 CATGTGATGCAACCTATGAACAG 58.083 43.478 0.00 0.00 0.00 3.16
5127 10142 4.968812 CATGTGATGCAACCTATGAACA 57.031 40.909 0.00 0.00 0.00 3.18
5140 10155 5.701855 TGTTTTCAGTGTATGCATGTGATG 58.298 37.500 10.16 3.50 0.00 3.07
5141 10156 5.963176 TGTTTTCAGTGTATGCATGTGAT 57.037 34.783 10.16 0.00 0.00 3.06
5142 10157 5.761003 CTTGTTTTCAGTGTATGCATGTGA 58.239 37.500 10.16 4.17 0.00 3.58
5143 10158 4.383649 GCTTGTTTTCAGTGTATGCATGTG 59.616 41.667 10.16 1.64 0.00 3.21
5144 10159 4.549458 GCTTGTTTTCAGTGTATGCATGT 58.451 39.130 10.16 0.00 0.00 3.21
5145 10160 3.922240 GGCTTGTTTTCAGTGTATGCATG 59.078 43.478 10.16 0.00 0.00 4.06
5146 10161 3.366273 CGGCTTGTTTTCAGTGTATGCAT 60.366 43.478 3.79 3.79 0.00 3.96
5147 10162 2.031245 CGGCTTGTTTTCAGTGTATGCA 60.031 45.455 0.00 0.00 0.00 3.96
5148 10163 2.584791 CGGCTTGTTTTCAGTGTATGC 58.415 47.619 0.00 0.00 0.00 3.14
5149 10164 2.552315 ACCGGCTTGTTTTCAGTGTATG 59.448 45.455 0.00 0.00 0.00 2.39
5150 10165 2.858745 ACCGGCTTGTTTTCAGTGTAT 58.141 42.857 0.00 0.00 0.00 2.29
5151 10166 2.335316 ACCGGCTTGTTTTCAGTGTA 57.665 45.000 0.00 0.00 0.00 2.90
5152 10167 1.134175 CAACCGGCTTGTTTTCAGTGT 59.866 47.619 0.00 0.00 0.00 3.55
5153 10168 1.838913 CAACCGGCTTGTTTTCAGTG 58.161 50.000 0.00 0.00 0.00 3.66
5154 10169 0.102300 GCAACCGGCTTGTTTTCAGT 59.898 50.000 0.00 0.00 40.25 3.41
5155 10170 2.885502 GCAACCGGCTTGTTTTCAG 58.114 52.632 0.00 0.00 40.25 3.02
5165 10180 0.393808 TTCCTATTGGAGCAACCGGC 60.394 55.000 0.00 0.00 44.24 6.13
5166 10181 1.668419 CTTCCTATTGGAGCAACCGG 58.332 55.000 0.00 0.00 44.24 5.28
5167 10182 1.668419 CCTTCCTATTGGAGCAACCG 58.332 55.000 0.00 0.00 44.24 4.44
5168 10183 1.564348 TCCCTTCCTATTGGAGCAACC 59.436 52.381 0.00 0.00 44.24 3.77
5169 10184 3.054361 TCTTCCCTTCCTATTGGAGCAAC 60.054 47.826 0.00 0.00 44.24 4.17
5170 10185 3.189606 TCTTCCCTTCCTATTGGAGCAA 58.810 45.455 0.00 0.00 44.24 3.91
5171 10186 2.774234 CTCTTCCCTTCCTATTGGAGCA 59.226 50.000 0.00 0.00 44.24 4.26
5172 10187 2.105649 CCTCTTCCCTTCCTATTGGAGC 59.894 54.545 0.00 0.00 44.24 4.70
5173 10188 2.708325 CCCTCTTCCCTTCCTATTGGAG 59.292 54.545 0.00 0.00 44.24 3.86
5174 10189 2.632360 CCCCTCTTCCCTTCCTATTGGA 60.632 54.545 0.00 0.00 41.36 3.53
5175 10190 1.777272 CCCCTCTTCCCTTCCTATTGG 59.223 57.143 0.00 0.00 0.00 3.16
5176 10191 1.777272 CCCCCTCTTCCCTTCCTATTG 59.223 57.143 0.00 0.00 0.00 1.90
5177 10192 1.662623 TCCCCCTCTTCCCTTCCTATT 59.337 52.381 0.00 0.00 0.00 1.73
5178 10193 1.340502 TCCCCCTCTTCCCTTCCTAT 58.659 55.000 0.00 0.00 0.00 2.57
5179 10194 1.009675 CTTCCCCCTCTTCCCTTCCTA 59.990 57.143 0.00 0.00 0.00 2.94
5180 10195 0.253394 CTTCCCCCTCTTCCCTTCCT 60.253 60.000 0.00 0.00 0.00 3.36
5181 10196 1.282653 CCTTCCCCCTCTTCCCTTCC 61.283 65.000 0.00 0.00 0.00 3.46
5182 10197 1.282653 CCCTTCCCCCTCTTCCCTTC 61.283 65.000 0.00 0.00 0.00 3.46
5183 10198 1.230314 CCCTTCCCCCTCTTCCCTT 60.230 63.158 0.00 0.00 0.00 3.95
5184 10199 2.461637 CCCTTCCCCCTCTTCCCT 59.538 66.667 0.00 0.00 0.00 4.20
5185 10200 2.696504 CCCCTTCCCCCTCTTCCC 60.697 72.222 0.00 0.00 0.00 3.97
5186 10201 2.696504 CCCCCTTCCCCCTCTTCC 60.697 72.222 0.00 0.00 0.00 3.46
5204 10219 5.456907 GGAAAGGAAAGAGGGAATAGGATCC 60.457 48.000 2.48 2.48 38.86 3.36
5205 10220 5.371176 AGGAAAGGAAAGAGGGAATAGGATC 59.629 44.000 0.00 0.00 0.00 3.36
5206 10221 5.301141 AGGAAAGGAAAGAGGGAATAGGAT 58.699 41.667 0.00 0.00 0.00 3.24
5207 10222 4.711055 AGGAAAGGAAAGAGGGAATAGGA 58.289 43.478 0.00 0.00 0.00 2.94
5208 10223 4.141367 GGAGGAAAGGAAAGAGGGAATAGG 60.141 50.000 0.00 0.00 0.00 2.57
5209 10224 4.724293 AGGAGGAAAGGAAAGAGGGAATAG 59.276 45.833 0.00 0.00 0.00 1.73
5210 10225 4.711055 AGGAGGAAAGGAAAGAGGGAATA 58.289 43.478 0.00 0.00 0.00 1.75
5211 10226 3.546840 AGGAGGAAAGGAAAGAGGGAAT 58.453 45.455 0.00 0.00 0.00 3.01
5212 10227 3.005529 AGGAGGAAAGGAAAGAGGGAA 57.994 47.619 0.00 0.00 0.00 3.97
5213 10228 2.743131 AGGAGGAAAGGAAAGAGGGA 57.257 50.000 0.00 0.00 0.00 4.20
5214 10229 2.025793 GGAAGGAGGAAAGGAAAGAGGG 60.026 54.545 0.00 0.00 0.00 4.30
5215 10230 2.025793 GGGAAGGAGGAAAGGAAAGAGG 60.026 54.545 0.00 0.00 0.00 3.69
5216 10231 2.025793 GGGGAAGGAGGAAAGGAAAGAG 60.026 54.545 0.00 0.00 0.00 2.85
5217 10232 1.993301 GGGGAAGGAGGAAAGGAAAGA 59.007 52.381 0.00 0.00 0.00 2.52
5218 10233 1.996291 AGGGGAAGGAGGAAAGGAAAG 59.004 52.381 0.00 0.00 0.00 2.62
5219 10234 2.149521 AGGGGAAGGAGGAAAGGAAA 57.850 50.000 0.00 0.00 0.00 3.13
5220 10235 2.149521 AAGGGGAAGGAGGAAAGGAA 57.850 50.000 0.00 0.00 0.00 3.36
5221 10236 1.993301 GAAAGGGGAAGGAGGAAAGGA 59.007 52.381 0.00 0.00 0.00 3.36
5222 10237 1.006043 GGAAAGGGGAAGGAGGAAAGG 59.994 57.143 0.00 0.00 0.00 3.11
5223 10238 1.996291 AGGAAAGGGGAAGGAGGAAAG 59.004 52.381 0.00 0.00 0.00 2.62
5224 10239 2.149521 AGGAAAGGGGAAGGAGGAAA 57.850 50.000 0.00 0.00 0.00 3.13
5225 10240 1.993301 GAAGGAAAGGGGAAGGAGGAA 59.007 52.381 0.00 0.00 0.00 3.36
5226 10241 1.154434 AGAAGGAAAGGGGAAGGAGGA 59.846 52.381 0.00 0.00 0.00 3.71
5227 10242 1.562008 GAGAAGGAAAGGGGAAGGAGG 59.438 57.143 0.00 0.00 0.00 4.30
5228 10243 1.562008 GGAGAAGGAAAGGGGAAGGAG 59.438 57.143 0.00 0.00 0.00 3.69
5229 10244 1.132201 TGGAGAAGGAAAGGGGAAGGA 60.132 52.381 0.00 0.00 0.00 3.36
5230 10245 1.372501 TGGAGAAGGAAAGGGGAAGG 58.627 55.000 0.00 0.00 0.00 3.46
5231 10246 3.746792 ATTGGAGAAGGAAAGGGGAAG 57.253 47.619 0.00 0.00 0.00 3.46
5232 10247 4.159557 CAAATTGGAGAAGGAAAGGGGAA 58.840 43.478 0.00 0.00 0.00 3.97
5233 10248 3.502119 CCAAATTGGAGAAGGAAAGGGGA 60.502 47.826 6.04 0.00 40.96 4.81
5234 10249 2.833943 CCAAATTGGAGAAGGAAAGGGG 59.166 50.000 6.04 0.00 40.96 4.79
5235 10250 3.510459 ACCAAATTGGAGAAGGAAAGGG 58.490 45.455 20.25 0.00 40.96 3.95
5236 10251 4.151883 TGACCAAATTGGAGAAGGAAAGG 58.848 43.478 20.25 0.00 40.96 3.11
5237 10252 4.321527 GCTGACCAAATTGGAGAAGGAAAG 60.322 45.833 20.25 5.12 40.96 2.62
5238 10253 3.573967 GCTGACCAAATTGGAGAAGGAAA 59.426 43.478 20.25 0.00 40.96 3.13
5239 10254 3.157087 GCTGACCAAATTGGAGAAGGAA 58.843 45.455 20.25 0.00 40.96 3.36
5240 10255 2.555227 GGCTGACCAAATTGGAGAAGGA 60.555 50.000 20.25 0.00 40.96 3.36
5241 10256 1.821136 GGCTGACCAAATTGGAGAAGG 59.179 52.381 20.25 5.14 40.96 3.46
5242 10257 1.821136 GGGCTGACCAAATTGGAGAAG 59.179 52.381 20.25 13.03 40.96 2.85
5243 10258 1.923356 GGGCTGACCAAATTGGAGAA 58.077 50.000 20.25 2.56 40.96 2.87
5244 10259 3.670105 GGGCTGACCAAATTGGAGA 57.330 52.632 20.25 3.31 40.96 3.71
5276 10291 4.974721 ACAAAGGGGCTGGTGCGG 62.975 66.667 0.00 0.00 40.82 5.69
5277 10292 3.673484 CACAAAGGGGCTGGTGCG 61.673 66.667 0.00 0.00 40.82 5.34
5278 10293 3.305516 CCACAAAGGGGCTGGTGC 61.306 66.667 0.00 0.00 38.76 5.01
5285 10300 2.198426 ACACCAGCCACAAAGGGG 59.802 61.111 0.00 0.00 38.09 4.79
5286 10301 1.042559 AACACACCAGCCACAAAGGG 61.043 55.000 0.00 0.00 38.09 3.95
5287 10302 0.823460 AAACACACCAGCCACAAAGG 59.177 50.000 0.00 0.00 41.84 3.11
5288 10303 1.202405 GGAAACACACCAGCCACAAAG 60.202 52.381 0.00 0.00 0.00 2.77
5289 10304 0.820871 GGAAACACACCAGCCACAAA 59.179 50.000 0.00 0.00 0.00 2.83
5290 10305 1.040339 GGGAAACACACCAGCCACAA 61.040 55.000 0.00 0.00 0.00 3.33
5291 10306 1.454847 GGGAAACACACCAGCCACA 60.455 57.895 0.00 0.00 0.00 4.17
5292 10307 0.755327 AAGGGAAACACACCAGCCAC 60.755 55.000 0.00 0.00 0.00 5.01
5293 10308 0.467290 GAAGGGAAACACACCAGCCA 60.467 55.000 0.00 0.00 0.00 4.75
5294 10309 0.178990 AGAAGGGAAACACACCAGCC 60.179 55.000 0.00 0.00 0.00 4.85
5295 10310 1.338020 CAAGAAGGGAAACACACCAGC 59.662 52.381 0.00 0.00 0.00 4.85
5296 10311 1.956477 CCAAGAAGGGAAACACACCAG 59.044 52.381 0.00 0.00 0.00 4.00
5297 10312 2.026905 GCCAAGAAGGGAAACACACCA 61.027 52.381 0.00 0.00 38.09 4.17
5298 10313 0.673985 GCCAAGAAGGGAAACACACC 59.326 55.000 0.00 0.00 38.09 4.16
5299 10314 0.673985 GGCCAAGAAGGGAAACACAC 59.326 55.000 0.00 0.00 38.09 3.82
5300 10315 0.469144 GGGCCAAGAAGGGAAACACA 60.469 55.000 4.39 0.00 38.09 3.72
5301 10316 0.469144 TGGGCCAAGAAGGGAAACAC 60.469 55.000 2.13 0.00 38.09 3.32
5302 10317 0.486879 ATGGGCCAAGAAGGGAAACA 59.513 50.000 11.89 0.00 38.09 2.83
5303 10318 2.525105 TATGGGCCAAGAAGGGAAAC 57.475 50.000 11.89 0.00 38.09 2.78
5304 10319 2.292192 CCTTATGGGCCAAGAAGGGAAA 60.292 50.000 30.04 9.20 35.74 3.13
5305 10320 1.287739 CCTTATGGGCCAAGAAGGGAA 59.712 52.381 30.04 10.17 35.74 3.97
5306 10321 0.926293 CCTTATGGGCCAAGAAGGGA 59.074 55.000 30.04 0.79 35.74 4.20
5307 10322 3.520623 CCTTATGGGCCAAGAAGGG 57.479 57.895 30.04 17.74 35.74 3.95
5317 10332 3.259123 GCAAAAGATATGGGCCTTATGGG 59.741 47.826 16.01 3.24 38.36 4.00
5318 10333 3.259123 GGCAAAAGATATGGGCCTTATGG 59.741 47.826 16.01 2.95 41.39 2.74
5319 10334 4.525912 GGCAAAAGATATGGGCCTTATG 57.474 45.455 16.01 4.88 41.39 1.90
5324 10339 1.043022 CCAGGCAAAAGATATGGGCC 58.957 55.000 0.00 0.00 44.92 5.80
5325 10340 2.071778 TCCAGGCAAAAGATATGGGC 57.928 50.000 0.00 0.00 0.00 5.36
5326 10341 2.695147 GGTTCCAGGCAAAAGATATGGG 59.305 50.000 0.00 0.00 0.00 4.00
5327 10342 2.695147 GGGTTCCAGGCAAAAGATATGG 59.305 50.000 0.00 0.00 0.00 2.74
5328 10343 3.635591 AGGGTTCCAGGCAAAAGATATG 58.364 45.455 0.00 0.00 0.00 1.78
5329 10344 4.337264 AAGGGTTCCAGGCAAAAGATAT 57.663 40.909 0.00 0.00 0.00 1.63
5330 10345 3.825908 AAGGGTTCCAGGCAAAAGATA 57.174 42.857 0.00 0.00 0.00 1.98
5331 10346 2.702270 AAGGGTTCCAGGCAAAAGAT 57.298 45.000 0.00 0.00 0.00 2.40
5332 10347 2.470057 AAAGGGTTCCAGGCAAAAGA 57.530 45.000 0.00 0.00 0.00 2.52
5333 10348 2.545742 CGAAAAGGGTTCCAGGCAAAAG 60.546 50.000 0.00 0.00 0.00 2.27
5334 10349 1.410882 CGAAAAGGGTTCCAGGCAAAA 59.589 47.619 0.00 0.00 0.00 2.44
5335 10350 1.036707 CGAAAAGGGTTCCAGGCAAA 58.963 50.000 0.00 0.00 0.00 3.68
5336 10351 0.825840 CCGAAAAGGGTTCCAGGCAA 60.826 55.000 0.00 0.00 35.97 4.52
5337 10352 1.228429 CCGAAAAGGGTTCCAGGCA 60.228 57.895 0.00 0.00 35.97 4.75
5338 10353 1.228459 ACCGAAAAGGGTTCCAGGC 60.228 57.895 0.00 0.00 46.96 4.85
5339 10354 0.179001 ACACCGAAAAGGGTTCCAGG 60.179 55.000 0.00 0.00 46.96 4.45
5340 10355 1.687563 AACACCGAAAAGGGTTCCAG 58.312 50.000 0.00 0.00 46.96 3.86
5341 10356 3.907458 AACACCGAAAAGGGTTCCA 57.093 47.368 0.00 0.00 46.96 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.