Multiple sequence alignment - TraesCS3B01G484000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G484000 chr3B 100.000 5210 0 0 1 5210 730341273 730346482 0.000000e+00 9622.0
1 TraesCS3B01G484000 chr3B 78.593 995 158 33 1603 2563 730232532 730233505 1.600000e-169 606.0
2 TraesCS3B01G484000 chr3B 83.633 501 78 3 2862 3358 730314886 730315386 7.900000e-128 468.0
3 TraesCS3B01G484000 chr3B 80.374 535 73 13 3032 3541 732861224 732861751 1.370000e-100 377.0
4 TraesCS3B01G484000 chr3B 78.810 420 50 17 1039 1448 730313198 730313588 4.030000e-61 246.0
5 TraesCS3B01G484000 chr3B 80.420 286 38 14 1019 1292 730756453 730756732 8.850000e-48 202.0
6 TraesCS3B01G484000 chr3B 82.099 162 26 3 3575 3735 730315739 730315898 9.100000e-28 135.0
7 TraesCS3B01G484000 chr3B 84.821 112 17 0 2007 2118 730757600 730757711 4.260000e-21 113.0
8 TraesCS3B01G484000 chr3D 91.399 2895 194 33 1407 4262 550682046 550684924 0.000000e+00 3916.0
9 TraesCS3B01G484000 chr3D 82.888 748 63 34 3079 3801 593678061 593677354 3.450000e-171 612.0
10 TraesCS3B01G484000 chr3D 80.427 843 90 48 696 1477 550681152 550681980 1.630000e-159 573.0
11 TraesCS3B01G484000 chr3D 81.541 558 81 11 2016 2563 550651495 550652040 1.720000e-119 440.0
12 TraesCS3B01G484000 chr3D 72.625 621 133 26 3620 4212 551079779 551080390 2.490000e-38 171.0
13 TraesCS3B01G484000 chr3D 77.143 280 38 18 1022 1279 551073198 551073473 7.030000e-29 139.0
14 TraesCS3B01G484000 chr3D 72.014 561 113 33 1617 2155 551134581 551135119 5.480000e-25 126.0
15 TraesCS3B01G484000 chr3D 85.714 112 16 0 2007 2118 551202040 551202151 9.160000e-23 119.0
16 TraesCS3B01G484000 chr3D 92.308 78 5 1 1212 1288 551201113 551201190 5.520000e-20 110.0
17 TraesCS3B01G484000 chr3A 90.424 3018 213 42 1314 4295 687674510 687677487 0.000000e+00 3903.0
18 TraesCS3B01G484000 chr3A 97.710 917 18 3 4296 5210 593308432 593307517 0.000000e+00 1574.0
19 TraesCS3B01G484000 chr3A 84.316 950 123 18 1663 2589 687601264 687602210 0.000000e+00 905.0
20 TraesCS3B01G484000 chr3A 79.032 992 155 39 1603 2563 687525531 687526500 9.520000e-177 630.0
21 TraesCS3B01G484000 chr3A 79.377 674 78 28 681 1311 687673824 687674479 8.070000e-113 418.0
22 TraesCS3B01G484000 chr3A 84.958 359 30 11 681 1029 687671333 687671677 5.000000e-90 342.0
23 TraesCS3B01G484000 chr3A 86.982 169 22 0 3061 3229 688918619 688918787 1.910000e-44 191.0
24 TraesCS3B01G484000 chr3A 77.286 339 61 13 3802 4137 688368489 688368814 8.910000e-43 185.0
25 TraesCS3B01G484000 chr3A 78.102 274 53 6 3945 4212 688351541 688351813 3.230000e-37 167.0
26 TraesCS3B01G484000 chr3A 94.805 77 4 0 1216 1292 688356708 688356784 2.550000e-23 121.0
27 TraesCS3B01G484000 chrUn 97.819 917 17 3 4296 5210 189387262 189388177 0.000000e+00 1580.0
28 TraesCS3B01G484000 chrUn 97.383 917 20 3 4296 5210 370539468 370538554 0.000000e+00 1557.0
29 TraesCS3B01G484000 chr6A 97.819 917 16 3 4296 5210 289123380 289124294 0.000000e+00 1580.0
30 TraesCS3B01G484000 chr5B 97.495 918 18 3 4296 5210 713031171 713030256 0.000000e+00 1563.0
31 TraesCS3B01G484000 chr5B 76.449 276 59 5 2271 2543 577364850 577364578 1.510000e-30 145.0
32 TraesCS3B01G484000 chr6B 97.383 917 20 3 4296 5210 394436192 394435278 0.000000e+00 1557.0
33 TraesCS3B01G484000 chr6B 79.814 431 57 15 3287 3692 356631144 356631569 2.370000e-73 287.0
34 TraesCS3B01G484000 chr5A 97.383 917 20 3 4296 5210 16608175 16607261 0.000000e+00 1557.0
35 TraesCS3B01G484000 chr5A 97.380 916 21 2 4296 5210 300067713 300068626 0.000000e+00 1555.0
36 TraesCS3B01G484000 chr5A 84.524 504 63 11 1 495 681208963 681208466 7.840000e-133 484.0
37 TraesCS3B01G484000 chr5A 83.762 505 65 13 1 495 681067120 681066623 3.680000e-126 462.0
38 TraesCS3B01G484000 chr5A 83.762 505 65 15 1 495 681138612 681138115 3.680000e-126 462.0
39 TraesCS3B01G484000 chr5A 83.200 500 73 8 1 492 413046358 413045862 1.030000e-121 448.0
40 TraesCS3B01G484000 chr5A 83.784 111 10 2 3841 3951 115090899 115091001 1.190000e-16 99.0
41 TraesCS3B01G484000 chr5A 90.278 72 7 0 3880 3951 115089317 115089388 1.540000e-15 95.3
42 TraesCS3B01G484000 chr7A 97.383 917 18 4 4296 5210 671945920 671945008 0.000000e+00 1555.0
43 TraesCS3B01G484000 chr7A 80.932 236 28 7 3564 3796 548314022 548314243 2.490000e-38 171.0
44 TraesCS3B01G484000 chr7A 83.784 111 10 2 3841 3951 548314332 548314434 1.190000e-16 99.0
45 TraesCS3B01G484000 chr4D 84.054 740 71 24 3079 3801 82034407 82033698 0.000000e+00 669.0
46 TraesCS3B01G484000 chr4D 85.996 457 53 7 1 450 56734492 56734944 3.650000e-131 479.0
47 TraesCS3B01G484000 chr7B 84.041 589 59 18 3230 3801 590135971 590136541 7.680000e-148 534.0
48 TraesCS3B01G484000 chr5D 84.276 566 61 17 3252 3801 123771213 123770660 1.290000e-145 527.0
49 TraesCS3B01G484000 chr5D 90.000 110 10 1 3841 3950 123770579 123770471 1.960000e-29 141.0
50 TraesCS3B01G484000 chr1D 85.443 474 57 9 1 466 447448884 447448415 2.820000e-132 483.0
51 TraesCS3B01G484000 chr1A 84.139 517 63 15 1 507 309396208 309395701 2.820000e-132 483.0
52 TraesCS3B01G484000 chr2D 81.664 589 85 16 1 578 630544059 630544635 7.900000e-128 468.0
53 TraesCS3B01G484000 chr2D 77.473 182 39 2 3978 4158 47415828 47415648 1.980000e-19 108.0
54 TraesCS3B01G484000 chr2D 75.824 182 42 2 3978 4158 47249250 47249070 2.000000e-14 91.6
55 TraesCS3B01G484000 chr7D 83.008 512 75 9 1 507 30126489 30125985 2.210000e-123 453.0
56 TraesCS3B01G484000 chr2B 81.409 511 61 17 3307 3801 358643683 358643191 2.280000e-103 387.0
57 TraesCS3B01G484000 chr2B 77.473 182 39 2 3978 4158 75609831 75609651 1.980000e-19 108.0
58 TraesCS3B01G484000 chr1B 80.942 446 56 19 3362 3794 569544998 569545427 5.030000e-85 326.0
59 TraesCS3B01G484000 chr2A 76.923 182 40 2 3978 4158 50957322 50957142 9.230000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G484000 chr3B 730341273 730346482 5209 False 9622.000000 9622 100.000000 1 5210 1 chr3B.!!$F2 5209
1 TraesCS3B01G484000 chr3B 730232532 730233505 973 False 606.000000 606 78.593000 1603 2563 1 chr3B.!!$F1 960
2 TraesCS3B01G484000 chr3B 732861224 732861751 527 False 377.000000 377 80.374000 3032 3541 1 chr3B.!!$F3 509
3 TraesCS3B01G484000 chr3B 730313198 730315898 2700 False 283.000000 468 81.514000 1039 3735 3 chr3B.!!$F4 2696
4 TraesCS3B01G484000 chr3D 550681152 550684924 3772 False 2244.500000 3916 85.913000 696 4262 2 chr3D.!!$F5 3566
5 TraesCS3B01G484000 chr3D 593677354 593678061 707 True 612.000000 612 82.888000 3079 3801 1 chr3D.!!$R1 722
6 TraesCS3B01G484000 chr3D 550651495 550652040 545 False 440.000000 440 81.541000 2016 2563 1 chr3D.!!$F1 547
7 TraesCS3B01G484000 chr3A 593307517 593308432 915 True 1574.000000 1574 97.710000 4296 5210 1 chr3A.!!$R1 914
8 TraesCS3B01G484000 chr3A 687671333 687677487 6154 False 1554.333333 3903 84.919667 681 4295 3 chr3A.!!$F7 3614
9 TraesCS3B01G484000 chr3A 687601264 687602210 946 False 905.000000 905 84.316000 1663 2589 1 chr3A.!!$F2 926
10 TraesCS3B01G484000 chr3A 687525531 687526500 969 False 630.000000 630 79.032000 1603 2563 1 chr3A.!!$F1 960
11 TraesCS3B01G484000 chrUn 189387262 189388177 915 False 1580.000000 1580 97.819000 4296 5210 1 chrUn.!!$F1 914
12 TraesCS3B01G484000 chrUn 370538554 370539468 914 True 1557.000000 1557 97.383000 4296 5210 1 chrUn.!!$R1 914
13 TraesCS3B01G484000 chr6A 289123380 289124294 914 False 1580.000000 1580 97.819000 4296 5210 1 chr6A.!!$F1 914
14 TraesCS3B01G484000 chr5B 713030256 713031171 915 True 1563.000000 1563 97.495000 4296 5210 1 chr5B.!!$R2 914
15 TraesCS3B01G484000 chr6B 394435278 394436192 914 True 1557.000000 1557 97.383000 4296 5210 1 chr6B.!!$R1 914
16 TraesCS3B01G484000 chr5A 16607261 16608175 914 True 1557.000000 1557 97.383000 4296 5210 1 chr5A.!!$R1 914
17 TraesCS3B01G484000 chr5A 300067713 300068626 913 False 1555.000000 1555 97.380000 4296 5210 1 chr5A.!!$F1 914
18 TraesCS3B01G484000 chr7A 671945008 671945920 912 True 1555.000000 1555 97.383000 4296 5210 1 chr7A.!!$R1 914
19 TraesCS3B01G484000 chr4D 82033698 82034407 709 True 669.000000 669 84.054000 3079 3801 1 chr4D.!!$R1 722
20 TraesCS3B01G484000 chr7B 590135971 590136541 570 False 534.000000 534 84.041000 3230 3801 1 chr7B.!!$F1 571
21 TraesCS3B01G484000 chr5D 123770471 123771213 742 True 334.000000 527 87.138000 3252 3950 2 chr5D.!!$R1 698
22 TraesCS3B01G484000 chr1A 309395701 309396208 507 True 483.000000 483 84.139000 1 507 1 chr1A.!!$R1 506
23 TraesCS3B01G484000 chr2D 630544059 630544635 576 False 468.000000 468 81.664000 1 578 1 chr2D.!!$F1 577
24 TraesCS3B01G484000 chr7D 30125985 30126489 504 True 453.000000 453 83.008000 1 507 1 chr7D.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 264 0.032403 TGACGTGGTCGAATTTCCGT 59.968 50.0 0.0 0.0 40.62 4.69 F
818 823 0.036306 AAGTACCAAACGGAGCAGGG 59.964 55.0 0.0 0.0 0.00 4.45 F
870 875 0.321122 CTGGACCAAGCAGACAGGAC 60.321 60.0 0.0 0.0 0.00 3.85 F
1315 3880 0.595095 CTCAGGCTTGTTTGACAGCC 59.405 55.0 1.7 1.7 40.39 4.85 F
2900 5803 1.251251 AGGCTGTGCAAAATGGAGTC 58.749 50.0 0.0 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1165 3715 0.036199 CAGAGCAAGAGAAGCCAGCT 60.036 55.000 0.00 0.0 38.43 4.24 R
2446 5333 0.179040 GTTCCACGGTTGAGTTCCCA 60.179 55.000 0.00 0.0 0.00 4.37 R
2839 5731 3.433274 TGACAACACAGATTCTCGCATTC 59.567 43.478 0.00 0.0 0.00 2.67 R
3012 5922 1.002888 TCCAGAAGCAAAGCTGAGAGG 59.997 52.381 0.00 0.0 39.62 3.69 R
4317 7456 0.605589 AGTGGAAGAGCTTCTCGGTG 59.394 55.000 9.82 0.0 39.45 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.203070 GATCGAGGCCGCCAATGT 60.203 61.111 13.15 0.00 35.37 2.71
36 37 1.372087 GAGGCCGCCAATGTCAAGAG 61.372 60.000 13.15 0.00 0.00 2.85
53 54 2.936202 AGAGCAAGGCAAAAGAAGTGA 58.064 42.857 0.00 0.00 0.00 3.41
77 78 1.963338 GCTAGCATGATGACGGGGC 60.963 63.158 10.63 0.00 0.00 5.80
79 80 0.320247 CTAGCATGATGACGGGGCTC 60.320 60.000 0.00 0.00 36.10 4.70
113 114 0.032540 GGACCTAAACACCGTGTCGT 59.967 55.000 4.23 0.00 0.00 4.34
146 147 2.625737 CATGGTTCGAGAAGATGCAGT 58.374 47.619 0.00 0.00 0.00 4.40
150 151 0.173481 TTCGAGAAGATGCAGTCCGG 59.827 55.000 0.00 0.00 0.00 5.14
160 161 0.821301 TGCAGTCCGGCATGTTCAAA 60.821 50.000 0.00 0.00 39.25 2.69
163 164 2.610232 GCAGTCCGGCATGTTCAAATTT 60.610 45.455 0.00 0.00 0.00 1.82
201 203 0.810031 GCGGAGAGCGCCATCTTTTA 60.810 55.000 2.29 0.00 35.41 1.52
212 214 3.980775 CGCCATCTTTTATTTTATGCCGG 59.019 43.478 0.00 0.00 0.00 6.13
245 247 3.458163 GACCACGGCCCGAGATGA 61.458 66.667 11.71 0.00 0.00 2.92
258 260 2.259618 CGAGATGACGTGGTCGAATTT 58.740 47.619 0.00 0.00 40.62 1.82
262 264 0.032403 TGACGTGGTCGAATTTCCGT 59.968 50.000 0.00 0.00 40.62 4.69
276 278 2.131776 TTCCGTCCCTTTTTGTGTGT 57.868 45.000 0.00 0.00 0.00 3.72
277 279 1.670791 TCCGTCCCTTTTTGTGTGTC 58.329 50.000 0.00 0.00 0.00 3.67
279 281 1.292061 CGTCCCTTTTTGTGTGTCGA 58.708 50.000 0.00 0.00 0.00 4.20
281 283 1.004292 GTCCCTTTTTGTGTGTCGACG 60.004 52.381 11.62 0.00 0.00 5.12
413 416 3.171987 GCCGCTGCCATATGATCG 58.828 61.111 3.65 1.94 0.00 3.69
415 418 0.742281 GCCGCTGCCATATGATCGAT 60.742 55.000 3.65 0.00 0.00 3.59
416 419 1.471501 GCCGCTGCCATATGATCGATA 60.472 52.381 3.65 0.00 0.00 2.92
419 423 2.208431 GCTGCCATATGATCGATAGCC 58.792 52.381 3.65 0.00 0.00 3.93
421 425 1.212616 GCCATATGATCGATAGCCGC 58.787 55.000 3.65 0.00 38.37 6.53
423 427 1.410517 CCATATGATCGATAGCCGCCT 59.589 52.381 3.65 0.00 38.37 5.52
427 431 3.678056 ATGATCGATAGCCGCCTTTTA 57.322 42.857 0.00 0.00 38.37 1.52
430 434 4.385825 TGATCGATAGCCGCCTTTTAAAT 58.614 39.130 0.00 0.00 38.37 1.40
439 443 3.615056 GCCGCCTTTTAAATTTTATGCGT 59.385 39.130 14.59 0.00 39.16 5.24
446 450 7.464045 GCCTTTTAAATTTTATGCGTGGACATC 60.464 37.037 0.00 0.00 0.00 3.06
452 456 5.635417 TTTTATGCGTGGACATCAAATGA 57.365 34.783 0.00 0.00 0.00 2.57
453 457 5.635417 TTTATGCGTGGACATCAAATGAA 57.365 34.783 0.00 0.00 0.00 2.57
458 462 3.731867 GCGTGGACATCAAATGAATCACC 60.732 47.826 0.00 0.00 0.00 4.02
467 471 3.509184 TCAAATGAATCACCGGCATTGAA 59.491 39.130 0.00 0.00 32.96 2.69
471 475 0.960364 AATCACCGGCATTGAACGCT 60.960 50.000 0.00 0.00 0.00 5.07
472 476 0.107897 ATCACCGGCATTGAACGCTA 60.108 50.000 0.00 0.00 0.00 4.26
492 496 1.618343 AGGCCGACCCAAATCAAAAAG 59.382 47.619 0.00 0.00 36.11 2.27
495 499 2.556622 GCCGACCCAAATCAAAAAGAGA 59.443 45.455 0.00 0.00 0.00 3.10
496 500 3.005367 GCCGACCCAAATCAAAAAGAGAA 59.995 43.478 0.00 0.00 0.00 2.87
502 507 4.024387 CCCAAATCAAAAAGAGAACGACGA 60.024 41.667 0.00 0.00 0.00 4.20
507 512 2.719426 AAAAGAGAACGACGACCGAT 57.281 45.000 0.00 0.00 41.76 4.18
518 523 2.159612 CGACGACCGATCTAAACAGACA 60.160 50.000 0.00 0.00 41.76 3.41
551 556 3.426787 AACGTGTATCCATTTGGGTCA 57.573 42.857 0.00 0.00 38.11 4.02
555 560 1.280710 TGTATCCATTTGGGTCAGCGT 59.719 47.619 0.00 0.00 38.11 5.07
559 564 1.072489 TCCATTTGGGTCAGCGTGTTA 59.928 47.619 0.00 0.00 38.11 2.41
567 572 0.790814 GTCAGCGTGTTAGAGTTGCC 59.209 55.000 0.00 0.00 0.00 4.52
568 573 0.679505 TCAGCGTGTTAGAGTTGCCT 59.320 50.000 0.00 0.00 0.00 4.75
569 574 1.890489 TCAGCGTGTTAGAGTTGCCTA 59.110 47.619 0.00 0.00 0.00 3.93
570 575 2.297880 TCAGCGTGTTAGAGTTGCCTAA 59.702 45.455 0.00 0.00 0.00 2.69
571 576 3.056107 TCAGCGTGTTAGAGTTGCCTAAT 60.056 43.478 0.00 0.00 32.01 1.73
572 577 3.684788 CAGCGTGTTAGAGTTGCCTAATT 59.315 43.478 0.00 0.00 32.01 1.40
573 578 4.868171 CAGCGTGTTAGAGTTGCCTAATTA 59.132 41.667 0.00 0.00 32.01 1.40
574 579 5.523916 CAGCGTGTTAGAGTTGCCTAATTAT 59.476 40.000 0.00 0.00 32.01 1.28
575 580 6.037172 CAGCGTGTTAGAGTTGCCTAATTATT 59.963 38.462 0.00 0.00 32.01 1.40
576 581 6.598064 AGCGTGTTAGAGTTGCCTAATTATTT 59.402 34.615 0.00 0.00 32.01 1.40
577 582 7.767198 AGCGTGTTAGAGTTGCCTAATTATTTA 59.233 33.333 0.00 0.00 32.01 1.40
578 583 8.062448 GCGTGTTAGAGTTGCCTAATTATTTAG 58.938 37.037 0.00 0.00 35.55 1.85
579 584 9.309516 CGTGTTAGAGTTGCCTAATTATTTAGA 57.690 33.333 6.05 0.00 37.59 2.10
603 608 9.961264 AGATATATAGGACAAGATAAGTCACGA 57.039 33.333 0.00 0.00 37.74 4.35
605 610 9.961264 ATATATAGGACAAGATAAGTCACGAGA 57.039 33.333 0.00 0.00 37.74 4.04
606 611 8.871629 ATATAGGACAAGATAAGTCACGAGAT 57.128 34.615 0.00 0.00 37.74 2.75
607 612 5.255710 AGGACAAGATAAGTCACGAGATG 57.744 43.478 0.00 0.00 37.74 2.90
608 613 4.707448 AGGACAAGATAAGTCACGAGATGT 59.293 41.667 0.00 0.00 37.74 3.06
622 627 4.691175 ACGAGATGTGAGATGAGATTTGG 58.309 43.478 0.00 0.00 0.00 3.28
623 628 4.161189 ACGAGATGTGAGATGAGATTTGGT 59.839 41.667 0.00 0.00 0.00 3.67
624 629 5.360999 ACGAGATGTGAGATGAGATTTGGTA 59.639 40.000 0.00 0.00 0.00 3.25
625 630 5.919707 CGAGATGTGAGATGAGATTTGGTAG 59.080 44.000 0.00 0.00 0.00 3.18
626 631 6.238869 CGAGATGTGAGATGAGATTTGGTAGA 60.239 42.308 0.00 0.00 0.00 2.59
627 632 7.429374 AGATGTGAGATGAGATTTGGTAGAA 57.571 36.000 0.00 0.00 0.00 2.10
628 633 7.499292 AGATGTGAGATGAGATTTGGTAGAAG 58.501 38.462 0.00 0.00 0.00 2.85
629 634 6.857437 TGTGAGATGAGATTTGGTAGAAGA 57.143 37.500 0.00 0.00 0.00 2.87
630 635 7.244886 TGTGAGATGAGATTTGGTAGAAGAA 57.755 36.000 0.00 0.00 0.00 2.52
631 636 7.679783 TGTGAGATGAGATTTGGTAGAAGAAA 58.320 34.615 0.00 0.00 0.00 2.52
632 637 8.324306 TGTGAGATGAGATTTGGTAGAAGAAAT 58.676 33.333 0.00 0.00 0.00 2.17
633 638 8.825745 GTGAGATGAGATTTGGTAGAAGAAATC 58.174 37.037 0.00 0.00 38.38 2.17
634 639 7.989741 TGAGATGAGATTTGGTAGAAGAAATCC 59.010 37.037 0.00 0.00 38.73 3.01
635 640 7.865820 AGATGAGATTTGGTAGAAGAAATCCA 58.134 34.615 0.00 0.00 38.73 3.41
636 641 8.331740 AGATGAGATTTGGTAGAAGAAATCCAA 58.668 33.333 0.00 0.00 38.73 3.53
637 642 9.129532 GATGAGATTTGGTAGAAGAAATCCAAT 57.870 33.333 0.00 0.00 38.73 3.16
639 644 9.396022 TGAGATTTGGTAGAAGAAATCCAATAC 57.604 33.333 0.00 0.00 38.73 1.89
640 645 9.396022 GAGATTTGGTAGAAGAAATCCAATACA 57.604 33.333 0.00 0.00 38.73 2.29
641 646 9.753674 AGATTTGGTAGAAGAAATCCAATACAA 57.246 29.630 0.00 0.00 38.73 2.41
643 648 7.938140 TTGGTAGAAGAAATCCAATACAAGG 57.062 36.000 0.00 0.00 35.42 3.61
644 649 6.423182 TGGTAGAAGAAATCCAATACAAGGG 58.577 40.000 0.00 0.00 0.00 3.95
645 650 5.828328 GGTAGAAGAAATCCAATACAAGGGG 59.172 44.000 0.00 0.00 0.00 4.79
646 651 5.536497 AGAAGAAATCCAATACAAGGGGT 57.464 39.130 0.00 0.00 0.00 4.95
647 652 5.264395 AGAAGAAATCCAATACAAGGGGTG 58.736 41.667 0.00 0.00 0.00 4.61
648 653 4.675063 AGAAATCCAATACAAGGGGTGT 57.325 40.909 0.00 0.00 44.82 4.16
649 654 4.600062 AGAAATCCAATACAAGGGGTGTC 58.400 43.478 0.00 0.00 41.98 3.67
650 655 4.044065 AGAAATCCAATACAAGGGGTGTCA 59.956 41.667 0.00 0.00 41.98 3.58
651 656 3.652057 ATCCAATACAAGGGGTGTCAG 57.348 47.619 0.00 0.00 41.98 3.51
652 657 2.344592 TCCAATACAAGGGGTGTCAGT 58.655 47.619 0.00 0.00 41.98 3.41
653 658 2.714250 TCCAATACAAGGGGTGTCAGTT 59.286 45.455 0.00 0.00 41.98 3.16
654 659 3.139397 TCCAATACAAGGGGTGTCAGTTT 59.861 43.478 0.00 0.00 41.98 2.66
655 660 3.895041 CCAATACAAGGGGTGTCAGTTTT 59.105 43.478 0.00 0.00 41.98 2.43
656 661 4.343814 CCAATACAAGGGGTGTCAGTTTTT 59.656 41.667 0.00 0.00 41.98 1.94
657 662 5.288804 CAATACAAGGGGTGTCAGTTTTTG 58.711 41.667 0.00 0.00 41.98 2.44
658 663 1.480545 ACAAGGGGTGTCAGTTTTTGC 59.519 47.619 0.00 0.00 34.38 3.68
659 664 0.744281 AAGGGGTGTCAGTTTTTGCG 59.256 50.000 0.00 0.00 0.00 4.85
660 665 1.299850 GGGGTGTCAGTTTTTGCGC 60.300 57.895 0.00 0.00 0.00 6.09
661 666 1.733526 GGGTGTCAGTTTTTGCGCT 59.266 52.632 9.73 0.00 0.00 5.92
662 667 0.948678 GGGTGTCAGTTTTTGCGCTA 59.051 50.000 9.73 0.00 0.00 4.26
663 668 1.539827 GGGTGTCAGTTTTTGCGCTAT 59.460 47.619 9.73 0.00 0.00 2.97
664 669 2.030274 GGGTGTCAGTTTTTGCGCTATT 60.030 45.455 9.73 0.00 0.00 1.73
665 670 3.234386 GGTGTCAGTTTTTGCGCTATTC 58.766 45.455 9.73 0.00 0.00 1.75
666 671 3.234386 GTGTCAGTTTTTGCGCTATTCC 58.766 45.455 9.73 0.00 0.00 3.01
667 672 2.881513 TGTCAGTTTTTGCGCTATTCCA 59.118 40.909 9.73 0.00 0.00 3.53
668 673 3.058293 TGTCAGTTTTTGCGCTATTCCAG 60.058 43.478 9.73 0.00 0.00 3.86
678 683 2.301577 GCTATTCCAGCGAAGTGACT 57.698 50.000 0.00 0.00 41.37 3.41
679 684 3.438297 GCTATTCCAGCGAAGTGACTA 57.562 47.619 0.00 0.00 41.37 2.59
683 688 2.672961 TCCAGCGAAGTGACTATTGG 57.327 50.000 0.00 0.00 0.00 3.16
693 698 2.076863 GTGACTATTGGTGGACTGTGC 58.923 52.381 0.00 0.00 0.00 4.57
694 699 1.977854 TGACTATTGGTGGACTGTGCT 59.022 47.619 0.00 0.00 0.00 4.40
696 701 1.699634 ACTATTGGTGGACTGTGCTGT 59.300 47.619 0.00 0.00 0.00 4.40
697 702 2.079158 CTATTGGTGGACTGTGCTGTG 58.921 52.381 0.00 0.00 0.00 3.66
698 703 0.538057 ATTGGTGGACTGTGCTGTGG 60.538 55.000 0.00 0.00 0.00 4.17
718 723 1.138859 GAAAACAGCCACCCTGCTTTT 59.861 47.619 0.00 0.00 45.78 2.27
737 742 5.106515 GCTTTTCCAAAAGGCTAGTCTACAG 60.107 44.000 12.61 0.00 44.24 2.74
810 815 2.940410 ACCTGACACAAAGTACCAAACG 59.060 45.455 0.00 0.00 0.00 3.60
816 821 2.032030 CACAAAGTACCAAACGGAGCAG 60.032 50.000 0.00 0.00 0.00 4.24
818 823 0.036306 AAGTACCAAACGGAGCAGGG 59.964 55.000 0.00 0.00 0.00 4.45
834 839 2.092914 GCAGGGCTTGTACTATCAAGGT 60.093 50.000 0.00 0.00 43.26 3.50
864 869 3.650950 GGGGCTGGACCAAGCAGA 61.651 66.667 15.09 0.00 45.43 4.26
865 870 2.360475 GGGCTGGACCAAGCAGAC 60.360 66.667 15.09 0.00 45.43 3.51
868 873 1.673665 GCTGGACCAAGCAGACAGG 60.674 63.158 10.08 0.00 43.01 4.00
869 874 2.061220 CTGGACCAAGCAGACAGGA 58.939 57.895 0.00 0.00 0.00 3.86
870 875 0.321122 CTGGACCAAGCAGACAGGAC 60.321 60.000 0.00 0.00 0.00 3.85
871 876 1.053835 TGGACCAAGCAGACAGGACA 61.054 55.000 0.00 0.00 0.00 4.02
872 877 0.321122 GGACCAAGCAGACAGGACAG 60.321 60.000 0.00 0.00 0.00 3.51
873 878 0.952984 GACCAAGCAGACAGGACAGC 60.953 60.000 0.00 0.00 0.00 4.40
874 879 2.031516 CCAAGCAGACAGGACAGCG 61.032 63.158 0.00 0.00 0.00 5.18
895 906 1.447317 CGGCCATTTGATTCCGGGAG 61.447 60.000 2.24 0.00 38.35 4.30
935 946 1.400494 AGTTGGAACAGTTTGACACGC 59.600 47.619 0.00 0.00 42.39 5.34
953 964 5.408356 ACACGCAGGTACAGTAAAGATAAG 58.592 41.667 0.00 0.00 0.00 1.73
960 971 7.921745 GCAGGTACAGTAAAGATAAGAGGTAAG 59.078 40.741 0.00 0.00 0.00 2.34
965 976 7.557724 ACAGTAAAGATAAGAGGTAAGAAGGC 58.442 38.462 0.00 0.00 0.00 4.35
1018 1050 0.695347 CATGGCCTTATCCTCCCTCC 59.305 60.000 3.32 0.00 0.00 4.30
1073 1714 2.759114 CCCTGCTCTTGGCCTCAA 59.241 61.111 3.32 0.00 40.92 3.02
1074 1715 1.075482 CCCTGCTCTTGGCCTCAAA 59.925 57.895 3.32 0.00 40.92 2.69
1148 3698 3.489047 CAGGTAACCGTGCATTTGTTTTG 59.511 43.478 0.00 0.00 37.17 2.44
1157 3707 3.373439 GTGCATTTGTTTTGCTTGGTCAA 59.627 39.130 0.00 0.00 40.77 3.18
1158 3708 4.035441 GTGCATTTGTTTTGCTTGGTCAAT 59.965 37.500 0.00 0.00 40.77 2.57
1162 3712 4.478206 TTGTTTTGCTTGGTCAATTGGA 57.522 36.364 5.42 0.00 0.00 3.53
1165 3715 4.646945 TGTTTTGCTTGGTCAATTGGAGTA 59.353 37.500 5.42 0.00 0.00 2.59
1166 3716 5.221224 TGTTTTGCTTGGTCAATTGGAGTAG 60.221 40.000 5.42 0.37 0.00 2.57
1171 3735 1.340017 TGGTCAATTGGAGTAGCTGGC 60.340 52.381 5.42 0.00 0.00 4.85
1191 3755 2.261345 CTTCTCTTGCTCTGCTTCTCG 58.739 52.381 0.00 0.00 0.00 4.04
1210 3775 4.454504 TCTCGGGTTAATTTGCTCTGTTTC 59.545 41.667 0.00 0.00 0.00 2.78
1213 3778 4.917415 CGGGTTAATTTGCTCTGTTTCTTG 59.083 41.667 0.00 0.00 0.00 3.02
1214 3779 5.230182 GGGTTAATTTGCTCTGTTTCTTGG 58.770 41.667 0.00 0.00 0.00 3.61
1217 3782 6.273071 GTTAATTTGCTCTGTTTCTTGGTGT 58.727 36.000 0.00 0.00 0.00 4.16
1228 3793 4.595781 TGTTTCTTGGTGTAGTATGAGGGT 59.404 41.667 0.00 0.00 0.00 4.34
1314 3879 1.312815 ACTCAGGCTTGTTTGACAGC 58.687 50.000 0.00 0.00 0.00 4.40
1315 3880 0.595095 CTCAGGCTTGTTTGACAGCC 59.405 55.000 1.70 1.70 40.39 4.85
1320 3915 1.340889 GGCTTGTTTGACAGCCATTCA 59.659 47.619 5.29 0.00 40.07 2.57
1321 3916 2.608752 GGCTTGTTTGACAGCCATTCAG 60.609 50.000 5.29 0.00 40.07 3.02
1431 4028 5.751990 GGATACCACAAGTACAAGGTAATCG 59.248 44.000 8.99 0.00 39.80 3.34
1451 4048 4.247258 TCGCCGTCATAGTTTACATTGTT 58.753 39.130 0.00 0.00 0.00 2.83
1492 4233 5.974751 TGGTTGAATTGCTTCTACGTTTTTC 59.025 36.000 0.00 0.00 37.81 2.29
1531 4276 6.535508 AGAGAATAACACGTTATCCTTCTTGC 59.464 38.462 3.02 0.00 34.90 4.01
1535 4280 3.335579 ACACGTTATCCTTCTTGCTTCC 58.664 45.455 0.00 0.00 0.00 3.46
1547 4292 7.353525 TCCTTCTTGCTTCCCATTGAATTATA 58.646 34.615 0.00 0.00 31.06 0.98
1548 4293 7.285401 TCCTTCTTGCTTCCCATTGAATTATAC 59.715 37.037 0.00 0.00 31.06 1.47
1549 4294 7.286316 CCTTCTTGCTTCCCATTGAATTATACT 59.714 37.037 0.00 0.00 31.06 2.12
1550 4295 7.572523 TCTTGCTTCCCATTGAATTATACTG 57.427 36.000 0.00 0.00 31.06 2.74
1551 4296 5.772825 TGCTTCCCATTGAATTATACTGC 57.227 39.130 0.00 0.00 31.06 4.40
1612 4366 7.356540 TGTTTTGGTTTACACTAATGACATCG 58.643 34.615 0.00 0.00 0.00 3.84
1734 4499 2.093638 CACAATATTTCTCGTTGCGCG 58.906 47.619 0.00 0.00 43.01 6.86
1751 4517 5.372547 TGCGCGATACTATGAGTTTCTAT 57.627 39.130 12.10 0.00 0.00 1.98
1777 4544 8.811017 TGATAAAAATGGCTGATCTTTGGTTTA 58.189 29.630 0.00 0.00 0.00 2.01
1836 4611 7.343833 TCCAAAGGGGTTAGAGTACTACAATAG 59.656 40.741 0.00 0.00 38.11 1.73
1953 4809 2.540101 GACAAGCCGTGGAAATCTATCG 59.460 50.000 0.00 0.00 0.00 2.92
1970 4827 8.788325 AATCTATCGTAGTTGGCTAAAAGTTT 57.212 30.769 0.00 0.00 0.00 2.66
2202 5076 2.755952 ATTGGATAAAGGAGTGCCCC 57.244 50.000 0.00 0.00 34.66 5.80
2240 5121 8.723311 TGTCAAAATAATTGTACCTACTTTCCG 58.277 33.333 0.00 0.00 0.00 4.30
2245 5132 3.947910 TTGTACCTACTTTCCGAGTGG 57.052 47.619 0.00 0.00 39.48 4.00
2446 5333 4.148128 TGGAACAACAAAATGCACCATT 57.852 36.364 0.00 0.00 32.28 3.16
2582 5471 7.775053 ATTAACAATAACTCCTTTTGCCAGA 57.225 32.000 0.00 0.00 0.00 3.86
2589 5478 2.554032 ACTCCTTTTGCCAGAACATTCG 59.446 45.455 0.00 0.00 0.00 3.34
2600 5489 4.794655 GCCAGAACATTCGCCAACTTTTTA 60.795 41.667 0.00 0.00 0.00 1.52
2601 5490 5.469479 CCAGAACATTCGCCAACTTTTTAT 58.531 37.500 0.00 0.00 0.00 1.40
2602 5491 5.572896 CCAGAACATTCGCCAACTTTTTATC 59.427 40.000 0.00 0.00 0.00 1.75
2606 5495 4.915085 ACATTCGCCAACTTTTTATCAACG 59.085 37.500 0.00 0.00 0.00 4.10
2612 5501 6.148150 TCGCCAACTTTTTATCAACGAGTAAT 59.852 34.615 0.00 0.00 0.00 1.89
2735 5625 6.128472 GGTGTCTTCATGATTGCAATTTTTCC 60.128 38.462 14.33 0.40 0.00 3.13
2739 5629 6.806249 TCTTCATGATTGCAATTTTTCCGTAC 59.194 34.615 14.33 0.00 0.00 3.67
2747 5637 7.401484 TTGCAATTTTTCCGTACAAGATTTC 57.599 32.000 0.00 0.00 0.00 2.17
2757 5647 7.762588 TCCGTACAAGATTTCCCAATTTTTA 57.237 32.000 0.00 0.00 0.00 1.52
2794 5684 9.979270 CTCATGAATTACACAAACAGACTTATC 57.021 33.333 0.00 0.00 0.00 1.75
2894 5797 2.305928 TGTGTGTAGGCTGTGCAAAAT 58.694 42.857 0.00 0.00 0.00 1.82
2900 5803 1.251251 AGGCTGTGCAAAATGGAGTC 58.749 50.000 0.00 0.00 0.00 3.36
2942 5845 7.004086 ACTCATTTTGGACTTATCCTTTGACA 58.996 34.615 0.00 0.00 46.43 3.58
2945 5848 8.869109 TCATTTTGGACTTATCCTTTGACAAAT 58.131 29.630 0.05 0.00 46.43 2.32
2951 5854 8.383175 TGGACTTATCCTTTGACAAATTCTACT 58.617 33.333 0.05 0.00 46.43 2.57
2952 5855 8.669243 GGACTTATCCTTTGACAAATTCTACTG 58.331 37.037 0.05 0.00 42.45 2.74
2953 5856 9.220767 GACTTATCCTTTGACAAATTCTACTGT 57.779 33.333 0.05 0.00 0.00 3.55
2954 5857 9.003658 ACTTATCCTTTGACAAATTCTACTGTG 57.996 33.333 0.05 0.00 0.00 3.66
2955 5858 6.824305 ATCCTTTGACAAATTCTACTGTGG 57.176 37.500 0.05 0.00 0.00 4.17
2956 5859 5.935945 TCCTTTGACAAATTCTACTGTGGA 58.064 37.500 0.05 0.00 0.00 4.02
2957 5860 6.542821 TCCTTTGACAAATTCTACTGTGGAT 58.457 36.000 0.05 0.00 0.00 3.41
3001 5911 2.233271 AGACTTCATGTTTGGCTGGTG 58.767 47.619 0.00 0.00 0.00 4.17
3012 5922 4.234574 GTTTGGCTGGTGTGTTATTTAGC 58.765 43.478 0.00 0.00 0.00 3.09
3017 5927 3.623510 GCTGGTGTGTTATTTAGCCTCTC 59.376 47.826 0.00 0.00 0.00 3.20
3019 5929 4.832248 TGGTGTGTTATTTAGCCTCTCAG 58.168 43.478 0.00 0.00 0.00 3.35
3049 5960 4.591929 TCTGGATTCTGCAATGAATGTGA 58.408 39.130 5.96 0.14 36.86 3.58
3050 5961 4.638865 TCTGGATTCTGCAATGAATGTGAG 59.361 41.667 5.96 0.62 36.86 3.51
3071 5982 2.599659 GCAAACATGGAGCTAAGCAAC 58.400 47.619 0.00 0.00 0.00 4.17
3078 5989 2.944129 TGGAGCTAAGCAACCAACTTT 58.056 42.857 0.00 0.00 35.33 2.66
3104 6015 7.359849 TGTTGTTATATAGGACACTAGGACCT 58.640 38.462 0.00 0.00 37.76 3.85
3110 6021 3.555117 AGGACACTAGGACCTTTGGTA 57.445 47.619 0.00 0.00 35.25 3.25
3125 6036 4.578928 CCTTTGGTATTTGGAGATTACCCG 59.421 45.833 0.00 0.00 34.67 5.28
3139 6062 3.410631 TTACCCGCAAGTGATGAAGAA 57.589 42.857 0.00 0.00 0.00 2.52
3331 6255 7.720957 AGGTAAGCATATTTTGTATCTGCATCA 59.279 33.333 0.00 0.00 35.32 3.07
3477 6494 2.609747 TCTAGAACAGACCCAGCAACT 58.390 47.619 0.00 0.00 0.00 3.16
3520 6539 3.988379 TGTTTGTCAAAGATGCCACTC 57.012 42.857 0.00 0.00 0.00 3.51
3565 6590 7.458397 TGAAGTAGTTGAACTGGGAATTATGT 58.542 34.615 8.33 0.00 0.00 2.29
3577 6655 6.014327 ACTGGGAATTATGTTTCATGCAACTT 60.014 34.615 9.63 5.89 0.00 2.66
3625 6707 1.738030 CGGTTTATCCAGACGACCCAC 60.738 57.143 0.00 0.00 35.57 4.61
3670 6753 1.273838 ACCTGACAGAAGCCTATGGGA 60.274 52.381 3.32 0.00 33.58 4.37
3712 6795 3.701542 AGAGAATGGCAAGTCGATCTACA 59.298 43.478 0.00 0.00 0.00 2.74
3719 6802 3.126831 GCAAGTCGATCTACATTCTGGG 58.873 50.000 0.00 0.00 0.00 4.45
3731 6814 1.399440 CATTCTGGGCACAACGATCTG 59.601 52.381 0.00 0.00 0.00 2.90
3738 6822 1.664016 GGCACAACGATCTGCAAACTG 60.664 52.381 6.95 0.00 34.90 3.16
3739 6823 1.002468 GCACAACGATCTGCAAACTGT 60.002 47.619 0.00 0.00 33.31 3.55
3740 6824 2.541588 GCACAACGATCTGCAAACTGTT 60.542 45.455 0.00 0.00 33.31 3.16
3741 6825 3.038017 CACAACGATCTGCAAACTGTTG 58.962 45.455 15.78 15.78 41.69 3.33
3887 7026 1.059913 GGCCTACATAGGGAGCACAT 58.940 55.000 7.07 0.00 43.82 3.21
4013 7152 3.821841 CCAATGTGAAAGGTTACTTCGC 58.178 45.455 0.00 0.00 35.41 4.70
4032 7171 1.066430 GCGTGGAACTTCCTGGACATA 60.066 52.381 9.31 0.00 37.46 2.29
4036 7175 4.622933 CGTGGAACTTCCTGGACATATTCA 60.623 45.833 9.31 0.00 37.46 2.57
4050 7189 5.163301 GGACATATTCAAGTTCCTAGCAGGA 60.163 44.000 1.25 1.25 44.10 3.86
4057 7196 5.023452 TCAAGTTCCTAGCAGGATACAAGA 58.977 41.667 5.83 6.71 45.34 3.02
4086 7225 1.852895 GGCATGTATCGTGTCGACTTC 59.147 52.381 17.92 9.02 39.18 3.01
4250 7389 3.064207 TGAGTTTGTGCGTGACCTTATC 58.936 45.455 0.00 0.00 0.00 1.75
4317 7456 4.256920 TGCTACTTGAGAGAATGCCTTTC 58.743 43.478 0.00 0.00 34.31 2.62
4324 7463 1.902508 AGAGAATGCCTTTCACCGAGA 59.097 47.619 0.00 0.00 36.75 4.04
4408 7547 4.101114 TGTCCCAGTAAGCATTTCCTCTA 58.899 43.478 0.00 0.00 0.00 2.43
4437 7576 0.104672 TTCCCACCTCTGACCTTCCA 60.105 55.000 0.00 0.00 0.00 3.53
4464 7603 6.560003 TGACATGACCAGTCCACTAATAAT 57.440 37.500 0.00 0.00 35.15 1.28
4563 7702 4.018960 AGCAGTTATTGTCTTCCTGGTCAT 60.019 41.667 0.00 0.00 0.00 3.06
4637 7776 3.908103 ACTTAACCACTAGGCAAAGAGGA 59.092 43.478 9.68 0.00 39.06 3.71
4718 7857 1.203758 TGAGTGCTTTCGATCGGCTTA 59.796 47.619 16.41 0.00 0.00 3.09
4721 7860 3.270877 AGTGCTTTCGATCGGCTTATTT 58.729 40.909 16.41 0.00 0.00 1.40
4861 8001 6.575244 TCCTTCTATACAACCCAATCATGT 57.425 37.500 0.00 0.00 0.00 3.21
5064 8204 5.104485 AGGATGGTACCTTATGACTTCAACC 60.104 44.000 14.36 0.34 36.86 3.77
5148 8290 7.331791 ACCTAGAATGAAACTACCATTGTCTC 58.668 38.462 0.00 0.00 34.67 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.067180 CACTTCTTTTGCCTTGCTCTTGA 59.933 43.478 0.00 0.00 0.00 3.02
36 37 1.758783 CGTCACTTCTTTTGCCTTGC 58.241 50.000 0.00 0.00 0.00 4.01
77 78 2.223923 GGTCCACCTTCATGATCTCGAG 60.224 54.545 5.93 5.93 0.00 4.04
79 80 1.759445 AGGTCCACCTTCATGATCTCG 59.241 52.381 0.00 0.00 46.09 4.04
100 101 1.299620 CCTCGACGACACGGTGTTT 60.300 57.895 15.94 5.62 0.00 2.83
113 114 0.909610 AACCATGGCCTCTTCCTCGA 60.910 55.000 13.04 0.00 0.00 4.04
146 147 2.351253 CGTCAAATTTGAACATGCCGGA 60.351 45.455 22.07 0.00 39.21 5.14
150 151 3.550561 TCGTCGTCAAATTTGAACATGC 58.449 40.909 22.07 8.83 39.21 4.06
155 156 4.988540 AGATCACTCGTCGTCAAATTTGAA 59.011 37.500 22.07 5.45 39.21 2.69
160 161 4.611943 CCATAGATCACTCGTCGTCAAAT 58.388 43.478 0.00 0.00 0.00 2.32
163 164 1.333931 GCCATAGATCACTCGTCGTCA 59.666 52.381 0.00 0.00 0.00 4.35
197 198 4.926238 CACACTTGCCGGCATAAAATAAAA 59.074 37.500 33.25 11.16 0.00 1.52
201 203 1.404047 GCACACTTGCCGGCATAAAAT 60.404 47.619 33.25 12.63 43.66 1.82
238 240 1.909376 AATTCGACCACGTCATCTCG 58.091 50.000 0.00 0.00 40.69 4.04
245 247 0.668401 GGACGGAAATTCGACCACGT 60.668 55.000 3.77 0.00 42.68 4.49
258 260 1.670791 GACACACAAAAAGGGACGGA 58.329 50.000 0.00 0.00 0.00 4.69
262 264 1.292061 CGTCGACACACAAAAAGGGA 58.708 50.000 17.16 0.00 0.00 4.20
297 299 0.676466 TTCATACTGGCCCACTTGCG 60.676 55.000 0.00 0.00 0.00 4.85
403 406 1.410517 AGGCGGCTATCGATCATATGG 59.589 52.381 11.03 0.00 42.43 2.74
407 410 2.550830 AAAAGGCGGCTATCGATCAT 57.449 45.000 13.71 0.00 42.43 2.45
408 411 3.462483 TTAAAAGGCGGCTATCGATCA 57.538 42.857 13.71 0.00 42.43 2.92
409 412 5.358298 AATTTAAAAGGCGGCTATCGATC 57.642 39.130 13.71 0.00 42.43 3.69
410 413 5.767816 AAATTTAAAAGGCGGCTATCGAT 57.232 34.783 13.71 2.16 42.43 3.59
412 415 6.129194 GCATAAAATTTAAAAGGCGGCTATCG 60.129 38.462 13.71 0.00 42.76 2.92
413 416 6.129194 CGCATAAAATTTAAAAGGCGGCTATC 60.129 38.462 13.71 0.00 39.59 2.08
415 418 5.038033 CGCATAAAATTTAAAAGGCGGCTA 58.962 37.500 13.71 0.00 39.59 3.93
416 419 3.862845 CGCATAAAATTTAAAAGGCGGCT 59.137 39.130 5.25 5.25 39.59 5.52
421 425 7.543868 TGATGTCCACGCATAAAATTTAAAAGG 59.456 33.333 0.00 0.00 0.00 3.11
423 427 8.818141 TTGATGTCCACGCATAAAATTTAAAA 57.182 26.923 0.00 0.00 0.00 1.52
427 431 7.095910 TCATTTGATGTCCACGCATAAAATTT 58.904 30.769 0.00 0.00 37.66 1.82
430 434 5.635417 TCATTTGATGTCCACGCATAAAA 57.365 34.783 0.00 0.00 34.67 1.52
439 443 3.016031 CCGGTGATTCATTTGATGTCCA 58.984 45.455 0.00 0.00 0.00 4.02
446 450 3.507103 TCAATGCCGGTGATTCATTTG 57.493 42.857 1.90 0.00 0.00 2.32
452 456 0.960364 AGCGTTCAATGCCGGTGATT 60.960 50.000 1.90 0.00 32.98 2.57
453 457 0.107897 TAGCGTTCAATGCCGGTGAT 60.108 50.000 1.90 0.00 36.14 3.06
458 462 2.709475 GCCTAGCGTTCAATGCCG 59.291 61.111 0.00 0.00 0.00 5.69
467 471 2.588856 GATTTGGGTCGGCCTAGCGT 62.589 60.000 5.77 0.00 34.45 5.07
471 475 2.588464 TTTTGATTTGGGTCGGCCTA 57.412 45.000 5.77 0.00 34.45 3.93
472 476 1.618343 CTTTTTGATTTGGGTCGGCCT 59.382 47.619 5.77 0.00 34.45 5.19
492 496 3.097185 GTTTAGATCGGTCGTCGTTCTC 58.903 50.000 14.17 5.75 44.10 2.87
495 499 2.485426 TCTGTTTAGATCGGTCGTCGTT 59.515 45.455 0.00 0.00 40.32 3.85
496 500 2.079158 TCTGTTTAGATCGGTCGTCGT 58.921 47.619 0.00 0.00 40.32 4.34
537 542 1.280710 ACACGCTGACCCAAATGGATA 59.719 47.619 0.00 0.00 37.39 2.59
538 543 0.038166 ACACGCTGACCCAAATGGAT 59.962 50.000 0.00 0.00 37.39 3.41
542 547 2.038557 ACTCTAACACGCTGACCCAAAT 59.961 45.455 0.00 0.00 0.00 2.32
577 582 9.961264 TCGTGACTTATCTTGTCCTATATATCT 57.039 33.333 0.00 0.00 33.83 1.98
579 584 9.961264 TCTCGTGACTTATCTTGTCCTATATAT 57.039 33.333 0.00 0.00 33.83 0.86
580 585 9.961264 ATCTCGTGACTTATCTTGTCCTATATA 57.039 33.333 0.00 0.00 33.83 0.86
581 586 8.735315 CATCTCGTGACTTATCTTGTCCTATAT 58.265 37.037 0.00 0.00 33.83 0.86
582 587 7.720074 ACATCTCGTGACTTATCTTGTCCTATA 59.280 37.037 0.00 0.00 33.83 1.31
583 588 6.547880 ACATCTCGTGACTTATCTTGTCCTAT 59.452 38.462 0.00 0.00 33.83 2.57
584 589 5.886474 ACATCTCGTGACTTATCTTGTCCTA 59.114 40.000 0.00 0.00 33.83 2.94
585 590 4.707448 ACATCTCGTGACTTATCTTGTCCT 59.293 41.667 0.00 0.00 33.83 3.85
586 591 5.000012 ACATCTCGTGACTTATCTTGTCC 58.000 43.478 0.00 0.00 33.83 4.02
600 605 4.161189 ACCAAATCTCATCTCACATCTCGT 59.839 41.667 0.00 0.00 0.00 4.18
601 606 4.691175 ACCAAATCTCATCTCACATCTCG 58.309 43.478 0.00 0.00 0.00 4.04
602 607 7.048629 TCTACCAAATCTCATCTCACATCTC 57.951 40.000 0.00 0.00 0.00 2.75
603 608 7.344093 TCTTCTACCAAATCTCATCTCACATCT 59.656 37.037 0.00 0.00 0.00 2.90
604 609 7.495901 TCTTCTACCAAATCTCATCTCACATC 58.504 38.462 0.00 0.00 0.00 3.06
605 610 7.429374 TCTTCTACCAAATCTCATCTCACAT 57.571 36.000 0.00 0.00 0.00 3.21
606 611 6.857437 TCTTCTACCAAATCTCATCTCACA 57.143 37.500 0.00 0.00 0.00 3.58
607 612 8.729805 ATTTCTTCTACCAAATCTCATCTCAC 57.270 34.615 0.00 0.00 0.00 3.51
608 613 7.989741 GGATTTCTTCTACCAAATCTCATCTCA 59.010 37.037 4.79 0.00 38.53 3.27
609 614 7.989741 TGGATTTCTTCTACCAAATCTCATCTC 59.010 37.037 4.79 0.00 38.53 2.75
610 615 7.865820 TGGATTTCTTCTACCAAATCTCATCT 58.134 34.615 4.79 0.00 38.53 2.90
611 616 8.511604 TTGGATTTCTTCTACCAAATCTCATC 57.488 34.615 0.00 0.00 39.07 2.92
613 618 9.396022 GTATTGGATTTCTTCTACCAAATCTCA 57.604 33.333 0.00 0.16 43.91 3.27
614 619 9.396022 TGTATTGGATTTCTTCTACCAAATCTC 57.604 33.333 0.00 0.00 43.91 2.75
615 620 9.753674 TTGTATTGGATTTCTTCTACCAAATCT 57.246 29.630 0.00 0.00 43.91 2.40
617 622 8.971073 CCTTGTATTGGATTTCTTCTACCAAAT 58.029 33.333 0.00 0.00 43.91 2.32
618 623 7.396055 CCCTTGTATTGGATTTCTTCTACCAAA 59.604 37.037 0.00 0.00 43.91 3.28
619 624 6.889722 CCCTTGTATTGGATTTCTTCTACCAA 59.110 38.462 0.00 0.00 44.63 3.67
620 625 6.423182 CCCTTGTATTGGATTTCTTCTACCA 58.577 40.000 0.00 0.00 0.00 3.25
621 626 5.828328 CCCCTTGTATTGGATTTCTTCTACC 59.172 44.000 0.00 0.00 0.00 3.18
622 627 6.318900 CACCCCTTGTATTGGATTTCTTCTAC 59.681 42.308 0.00 0.00 0.00 2.59
623 628 6.011981 ACACCCCTTGTATTGGATTTCTTCTA 60.012 38.462 0.00 0.00 36.32 2.10
624 629 5.222337 ACACCCCTTGTATTGGATTTCTTCT 60.222 40.000 0.00 0.00 36.32 2.85
625 630 5.016831 ACACCCCTTGTATTGGATTTCTTC 58.983 41.667 0.00 0.00 36.32 2.87
626 631 5.010708 ACACCCCTTGTATTGGATTTCTT 57.989 39.130 0.00 0.00 36.32 2.52
627 632 4.044065 TGACACCCCTTGTATTGGATTTCT 59.956 41.667 0.00 0.00 39.17 2.52
628 633 4.340617 TGACACCCCTTGTATTGGATTTC 58.659 43.478 0.00 0.00 39.17 2.17
629 634 4.202673 ACTGACACCCCTTGTATTGGATTT 60.203 41.667 0.00 0.00 39.17 2.17
630 635 3.333680 ACTGACACCCCTTGTATTGGATT 59.666 43.478 0.00 0.00 39.17 3.01
631 636 2.919602 ACTGACACCCCTTGTATTGGAT 59.080 45.455 0.00 0.00 39.17 3.41
632 637 2.344592 ACTGACACCCCTTGTATTGGA 58.655 47.619 0.00 0.00 39.17 3.53
633 638 2.879103 ACTGACACCCCTTGTATTGG 57.121 50.000 0.00 0.00 39.17 3.16
634 639 5.288804 CAAAAACTGACACCCCTTGTATTG 58.711 41.667 0.00 0.00 39.17 1.90
635 640 4.202212 GCAAAAACTGACACCCCTTGTATT 60.202 41.667 0.00 0.00 39.17 1.89
636 641 3.320826 GCAAAAACTGACACCCCTTGTAT 59.679 43.478 0.00 0.00 39.17 2.29
637 642 2.691011 GCAAAAACTGACACCCCTTGTA 59.309 45.455 0.00 0.00 39.17 2.41
638 643 1.480545 GCAAAAACTGACACCCCTTGT 59.519 47.619 0.00 0.00 43.10 3.16
639 644 1.535860 CGCAAAAACTGACACCCCTTG 60.536 52.381 0.00 0.00 0.00 3.61
640 645 0.744281 CGCAAAAACTGACACCCCTT 59.256 50.000 0.00 0.00 0.00 3.95
641 646 1.734388 GCGCAAAAACTGACACCCCT 61.734 55.000 0.30 0.00 0.00 4.79
642 647 1.299850 GCGCAAAAACTGACACCCC 60.300 57.895 0.30 0.00 0.00 4.95
643 648 0.948678 TAGCGCAAAAACTGACACCC 59.051 50.000 11.47 0.00 0.00 4.61
644 649 2.989422 ATAGCGCAAAAACTGACACC 57.011 45.000 11.47 0.00 0.00 4.16
645 650 3.234386 GGAATAGCGCAAAAACTGACAC 58.766 45.455 11.47 0.00 0.00 3.67
646 651 2.881513 TGGAATAGCGCAAAAACTGACA 59.118 40.909 11.47 0.00 0.00 3.58
647 652 3.492313 CTGGAATAGCGCAAAAACTGAC 58.508 45.455 11.47 0.00 0.00 3.51
648 653 2.095263 GCTGGAATAGCGCAAAAACTGA 60.095 45.455 11.47 0.00 43.63 3.41
649 654 2.253603 GCTGGAATAGCGCAAAAACTG 58.746 47.619 11.47 1.96 43.63 3.16
650 655 2.636768 GCTGGAATAGCGCAAAAACT 57.363 45.000 11.47 0.00 43.63 2.66
660 665 4.747108 CCAATAGTCACTTCGCTGGAATAG 59.253 45.833 0.00 0.00 0.00 1.73
661 666 4.161565 ACCAATAGTCACTTCGCTGGAATA 59.838 41.667 2.15 0.00 0.00 1.75
662 667 3.055094 ACCAATAGTCACTTCGCTGGAAT 60.055 43.478 2.15 0.00 0.00 3.01
663 668 2.301870 ACCAATAGTCACTTCGCTGGAA 59.698 45.455 2.15 0.00 0.00 3.53
664 669 1.899814 ACCAATAGTCACTTCGCTGGA 59.100 47.619 2.15 0.00 0.00 3.86
665 670 2.002586 CACCAATAGTCACTTCGCTGG 58.997 52.381 0.00 0.00 0.00 4.85
666 671 2.002586 CCACCAATAGTCACTTCGCTG 58.997 52.381 0.00 0.00 0.00 5.18
667 672 1.899814 TCCACCAATAGTCACTTCGCT 59.100 47.619 0.00 0.00 0.00 4.93
668 673 2.000447 GTCCACCAATAGTCACTTCGC 59.000 52.381 0.00 0.00 0.00 4.70
669 674 3.254060 CAGTCCACCAATAGTCACTTCG 58.746 50.000 0.00 0.00 0.00 3.79
670 675 3.997021 CACAGTCCACCAATAGTCACTTC 59.003 47.826 0.00 0.00 0.00 3.01
671 676 3.807209 GCACAGTCCACCAATAGTCACTT 60.807 47.826 0.00 0.00 0.00 3.16
672 677 2.289694 GCACAGTCCACCAATAGTCACT 60.290 50.000 0.00 0.00 0.00 3.41
673 678 2.076863 GCACAGTCCACCAATAGTCAC 58.923 52.381 0.00 0.00 0.00 3.67
674 679 1.977854 AGCACAGTCCACCAATAGTCA 59.022 47.619 0.00 0.00 0.00 3.41
675 680 2.289694 ACAGCACAGTCCACCAATAGTC 60.290 50.000 0.00 0.00 0.00 2.59
676 681 1.699634 ACAGCACAGTCCACCAATAGT 59.300 47.619 0.00 0.00 0.00 2.12
677 682 2.079158 CACAGCACAGTCCACCAATAG 58.921 52.381 0.00 0.00 0.00 1.73
678 683 1.271325 CCACAGCACAGTCCACCAATA 60.271 52.381 0.00 0.00 0.00 1.90
679 684 0.538057 CCACAGCACAGTCCACCAAT 60.538 55.000 0.00 0.00 0.00 3.16
683 688 1.065551 GTTTTCCACAGCACAGTCCAC 59.934 52.381 0.00 0.00 0.00 4.02
696 701 1.832167 GCAGGGTGGCTGTTTTCCA 60.832 57.895 0.00 0.00 0.00 3.53
697 702 1.115326 AAGCAGGGTGGCTGTTTTCC 61.115 55.000 0.00 0.00 45.07 3.13
698 703 0.752658 AAAGCAGGGTGGCTGTTTTC 59.247 50.000 0.00 0.00 45.07 2.29
718 723 5.394224 CGATTCTGTAGACTAGCCTTTTGGA 60.394 44.000 0.00 0.00 44.07 3.53
737 742 1.343506 AACGCACTACCGAACGATTC 58.656 50.000 0.00 0.00 0.00 2.52
810 815 1.762957 TGATAGTACAAGCCCTGCTCC 59.237 52.381 0.00 0.00 38.25 4.70
816 821 3.532542 GACACCTTGATAGTACAAGCCC 58.467 50.000 0.00 0.00 43.83 5.19
818 823 3.858238 GTCGACACCTTGATAGTACAAGC 59.142 47.826 11.55 0.00 43.83 4.01
834 839 4.373116 GCCCCTGCTTCGTCGACA 62.373 66.667 17.16 0.00 33.53 4.35
868 873 4.481112 CAAATGGCCGGCGCTGTC 62.481 66.667 22.54 6.51 34.44 3.51
870 875 2.941964 GAATCAAATGGCCGGCGCTG 62.942 60.000 22.54 9.96 34.44 5.18
871 876 2.755469 AATCAAATGGCCGGCGCT 60.755 55.556 22.54 7.01 34.44 5.92
872 877 2.278792 GAATCAAATGGCCGGCGC 60.279 61.111 22.54 14.37 0.00 6.53
873 878 2.412937 GGAATCAAATGGCCGGCG 59.587 61.111 22.54 6.07 0.00 6.46
874 879 2.412937 CGGAATCAAATGGCCGGC 59.587 61.111 21.18 21.18 40.08 6.13
878 889 1.025041 GTCTCCCGGAATCAAATGGC 58.975 55.000 0.73 0.00 0.00 4.40
895 906 1.687494 GCATCGTCCACAGCTTCGTC 61.687 60.000 0.00 0.00 0.00 4.20
935 946 9.186837 TCTTACCTCTTATCTTTACTGTACCTG 57.813 37.037 0.00 0.00 0.00 4.00
953 964 2.416972 CCACTACGTGCCTTCTTACCTC 60.417 54.545 0.00 0.00 31.34 3.85
960 971 2.092882 GCGACCACTACGTGCCTTC 61.093 63.158 0.00 0.00 31.34 3.46
965 976 0.365523 CAAATCGCGACCACTACGTG 59.634 55.000 12.93 0.00 41.61 4.49
1018 1050 1.141449 CGAGAAGCAGGAGGAGCAG 59.859 63.158 0.00 0.00 0.00 4.24
1069 1710 1.014564 GGGAAGTCGCTCCGTTTGAG 61.015 60.000 0.00 0.00 44.47 3.02
1122 3672 2.396590 AATGCACGGTTACCTGGTAG 57.603 50.000 6.66 0.00 0.00 3.18
1148 3698 2.421424 CAGCTACTCCAATTGACCAAGC 59.579 50.000 7.12 10.40 0.00 4.01
1157 3707 2.476199 AGAGAAGCCAGCTACTCCAAT 58.524 47.619 0.00 0.00 0.00 3.16
1158 3708 1.944177 AGAGAAGCCAGCTACTCCAA 58.056 50.000 0.00 0.00 0.00 3.53
1162 3712 1.206849 GAGCAAGAGAAGCCAGCTACT 59.793 52.381 0.00 0.00 35.36 2.57
1165 3715 0.036199 CAGAGCAAGAGAAGCCAGCT 60.036 55.000 0.00 0.00 38.43 4.24
1166 3716 1.646624 GCAGAGCAAGAGAAGCCAGC 61.647 60.000 0.00 0.00 0.00 4.85
1171 3735 2.261345 CGAGAAGCAGAGCAAGAGAAG 58.739 52.381 0.00 0.00 0.00 2.85
1191 3755 5.221441 ACCAAGAAACAGAGCAAATTAACCC 60.221 40.000 0.00 0.00 0.00 4.11
1210 3775 2.420129 GGCACCCTCATACTACACCAAG 60.420 54.545 0.00 0.00 0.00 3.61
1213 3778 0.104304 CGGCACCCTCATACTACACC 59.896 60.000 0.00 0.00 0.00 4.16
1214 3779 0.822164 ACGGCACCCTCATACTACAC 59.178 55.000 0.00 0.00 0.00 2.90
1217 3782 1.682451 GCCACGGCACCCTCATACTA 61.682 60.000 2.36 0.00 41.49 1.82
1268 3833 0.320421 TTACCAGCGTGAGTGAAGGC 60.320 55.000 0.00 0.00 0.00 4.35
1329 3924 9.189723 GAGAAGAAATTGTCAATGAAAAAGGAG 57.810 33.333 0.00 0.00 0.00 3.69
1431 4028 5.329493 GGAAACAATGTAAACTATGACGGC 58.671 41.667 0.00 0.00 0.00 5.68
1451 4048 3.611025 ACCATGGTTTTTCTGAGGGAA 57.389 42.857 13.00 0.00 0.00 3.97
1492 4233 5.104360 TGTTATTCTCTCCTGGGATCAAAGG 60.104 44.000 6.59 6.59 34.65 3.11
1531 4276 7.514784 TCATGCAGTATAATTCAATGGGAAG 57.485 36.000 0.00 0.00 39.30 3.46
1535 4280 9.537192 AATTGTTCATGCAGTATAATTCAATGG 57.463 29.630 0.00 0.00 0.00 3.16
1547 4292 4.669206 TCCACAAAATTGTTCATGCAGT 57.331 36.364 0.00 0.00 39.91 4.40
1548 4293 4.449743 CCTTCCACAAAATTGTTCATGCAG 59.550 41.667 0.00 0.00 39.91 4.41
1549 4294 4.100653 TCCTTCCACAAAATTGTTCATGCA 59.899 37.500 0.00 0.00 39.91 3.96
1550 4295 4.630111 TCCTTCCACAAAATTGTTCATGC 58.370 39.130 0.00 0.00 39.91 4.06
1551 4296 7.733402 ATTTCCTTCCACAAAATTGTTCATG 57.267 32.000 0.00 0.00 39.91 3.07
1751 4517 6.855763 ACCAAAGATCAGCCATTTTTATCA 57.144 33.333 0.00 0.00 0.00 2.15
1762 4529 8.593492 ATTTCAGTTTTAAACCAAAGATCAGC 57.407 30.769 4.01 0.00 0.00 4.26
1777 4544 3.071457 CCCTCCCTGCAAATTTCAGTTTT 59.929 43.478 13.21 0.00 0.00 2.43
1807 4582 5.695424 AGTACTCTAACCCCTTTGGATTC 57.305 43.478 0.00 0.00 38.00 2.52
1836 4611 5.579511 TGTTTCACTAGCTCGTTTATAAGGC 59.420 40.000 0.00 0.00 0.00 4.35
1846 4624 3.307242 GCTTACCATGTTTCACTAGCTCG 59.693 47.826 0.00 0.00 0.00 5.03
1923 4706 1.732259 CCACGGCTTGTCATGTACTTC 59.268 52.381 0.00 0.00 0.00 3.01
1953 4809 8.697846 AAGAACAAAAACTTTTAGCCAACTAC 57.302 30.769 0.00 0.00 0.00 2.73
2202 5076 8.344098 ACAATTATTTTGACAACATTTTGCAGG 58.656 29.630 8.48 0.00 36.00 4.85
2240 5121 4.310769 CCATCGATGAGGAAATACCACTC 58.689 47.826 26.86 0.00 42.04 3.51
2245 5132 3.496130 CAGTGCCATCGATGAGGAAATAC 59.504 47.826 26.86 13.01 0.00 1.89
2430 5317 3.123157 TCCCAATGGTGCATTTTGTTG 57.877 42.857 0.00 0.00 31.05 3.33
2446 5333 0.179040 GTTCCACGGTTGAGTTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
2582 5471 5.401079 CGTTGATAAAAAGTTGGCGAATGTT 59.599 36.000 0.00 0.00 0.00 2.71
2589 5478 7.081976 ACATTACTCGTTGATAAAAAGTTGGC 58.918 34.615 0.00 0.00 0.00 4.52
2707 5597 4.707030 TTGCAATCATGAAGACACCATC 57.293 40.909 0.00 0.00 0.00 3.51
2709 5599 5.471556 AAATTGCAATCATGAAGACACCA 57.528 34.783 13.38 0.00 0.00 4.17
2735 5625 8.293867 TGTCTAAAAATTGGGAAATCTTGTACG 58.706 33.333 0.00 0.00 0.00 3.67
2747 5637 9.362539 CATGAGATCTTTTGTCTAAAAATTGGG 57.637 33.333 0.00 0.00 35.50 4.12
2757 5647 8.853077 TGTGTAATTCATGAGATCTTTTGTCT 57.147 30.769 0.00 0.00 0.00 3.41
2820 5712 7.023575 CGCATTCTGCTGAACTAAAATAAGTT 58.976 34.615 8.32 0.00 42.25 2.66
2839 5731 3.433274 TGACAACACAGATTCTCGCATTC 59.567 43.478 0.00 0.00 0.00 2.67
2894 5797 3.066291 ACATTTATGCCAACGACTCCA 57.934 42.857 0.00 0.00 0.00 3.86
2900 5803 7.810766 AAATGAGTAAACATTTATGCCAACG 57.189 32.000 0.00 0.00 44.97 4.10
2942 5845 8.515414 GTTGCTTCTAAATCCACAGTAGAATTT 58.485 33.333 0.00 0.00 34.29 1.82
2945 5848 6.769512 AGTTGCTTCTAAATCCACAGTAGAA 58.230 36.000 0.00 0.00 33.81 2.10
2951 5854 8.635765 ATCTTTTAGTTGCTTCTAAATCCACA 57.364 30.769 12.16 1.17 38.91 4.17
3001 5911 5.674820 GCAAAGCTGAGAGGCTAAATAACAC 60.675 44.000 0.00 0.00 42.24 3.32
3012 5922 1.002888 TCCAGAAGCAAAGCTGAGAGG 59.997 52.381 0.00 0.00 39.62 3.69
3017 5927 2.415625 GCAGAATCCAGAAGCAAAGCTG 60.416 50.000 0.00 0.00 39.62 4.24
3019 5929 1.542915 TGCAGAATCCAGAAGCAAAGC 59.457 47.619 0.00 0.00 31.42 3.51
3049 5960 1.272092 TGCTTAGCTCCATGTTTGCCT 60.272 47.619 5.60 0.00 0.00 4.75
3050 5961 1.176527 TGCTTAGCTCCATGTTTGCC 58.823 50.000 5.60 0.00 0.00 4.52
3071 5982 9.010029 AGTGTCCTATATAACAACAAAAGTTGG 57.990 33.333 12.36 0.00 38.55 3.77
3078 5989 7.842743 AGGTCCTAGTGTCCTATATAACAACAA 59.157 37.037 0.00 0.00 0.00 2.83
3104 6015 3.949113 GCGGGTAATCTCCAAATACCAAA 59.051 43.478 3.84 0.00 40.71 3.28
3110 6021 3.016736 CACTTGCGGGTAATCTCCAAAT 58.983 45.455 0.00 0.00 0.00 2.32
3125 6036 5.159209 CCAACATTCTTCTTCATCACTTGC 58.841 41.667 0.00 0.00 0.00 4.01
3139 6062 1.339151 GGAGGCGAGAACCAACATTCT 60.339 52.381 0.00 0.00 41.74 2.40
3314 6238 7.575365 CAATACGCTGATGCAGATACAAAATA 58.425 34.615 0.00 0.00 39.64 1.40
3430 6434 4.466015 TGCATCACGGAAGCATATATCCTA 59.534 41.667 0.62 0.00 31.25 2.94
3477 6494 2.297033 AGTGGAAACGTTTACCTCGCTA 59.703 45.455 20.37 0.00 0.00 4.26
3577 6655 4.439057 ACGTACTGCACTTGAGAGAAAAA 58.561 39.130 0.00 0.00 0.00 1.94
3586 6664 0.865769 GTTGGGACGTACTGCACTTG 59.134 55.000 0.00 0.00 0.00 3.16
3587 6665 0.599204 CGTTGGGACGTACTGCACTT 60.599 55.000 0.00 0.00 44.08 3.16
3625 6707 4.869215 TGCAACACACATTGTAATCCTTG 58.131 39.130 0.00 0.00 37.51 3.61
3670 6753 1.607225 TGGACATAAATGGGGAGGCT 58.393 50.000 0.00 0.00 0.00 4.58
3712 6795 1.742761 CAGATCGTTGTGCCCAGAAT 58.257 50.000 0.00 0.00 0.00 2.40
3719 6802 1.002468 ACAGTTTGCAGATCGTTGTGC 60.002 47.619 8.57 8.57 42.29 4.57
3773 6858 5.227152 GCCAAACTTCATCAAATTTACCGT 58.773 37.500 0.00 0.00 0.00 4.83
3887 7026 3.974719 TGGCTAACCTTAATGCATCCAA 58.025 40.909 0.00 0.00 36.63 3.53
3987 7126 2.380064 AACCTTTCACATTGGCTCCA 57.620 45.000 0.00 0.00 0.00 3.86
4013 7152 3.543680 ATATGTCCAGGAAGTTCCACG 57.456 47.619 23.87 13.75 39.61 4.94
4050 7189 3.391296 ACATGCCGAACCCTATCTTGTAT 59.609 43.478 0.00 0.00 0.00 2.29
4057 7196 1.968493 ACGATACATGCCGAACCCTAT 59.032 47.619 9.28 0.00 0.00 2.57
4235 7374 3.520290 CCTAAGATAAGGTCACGCACA 57.480 47.619 0.00 0.00 31.46 4.57
4271 7410 8.424133 GCATTCTTTCACCCAGGATAAATTTAT 58.576 33.333 10.51 10.51 0.00 1.40
4317 7456 0.605589 AGTGGAAGAGCTTCTCGGTG 59.394 55.000 9.82 0.00 39.45 4.94
4324 7463 6.886459 TGCTAATAAAATGAGTGGAAGAGCTT 59.114 34.615 0.00 0.00 0.00 3.74
4408 7547 3.140144 TCAGAGGTGGGAAACAAGGAAAT 59.860 43.478 0.00 0.00 0.00 2.17
4437 7576 3.445008 AGTGGACTGGTCATGTCATAGT 58.555 45.455 3.10 0.00 36.26 2.12
4563 7702 2.031069 CCAAGAGTCACTCGTCGAAAGA 60.031 50.000 0.00 0.00 35.36 2.52
4599 7738 5.437714 TGGTTAAGTAGATAGTAGGTCCCCT 59.562 44.000 0.00 0.00 37.71 4.79
4637 7776 3.721706 CCCGCTTCCTGGCTCCTT 61.722 66.667 0.00 0.00 0.00 3.36
4718 7857 3.059352 ACCTCGCAGCTTTAGTGAAAT 57.941 42.857 0.00 0.00 0.00 2.17
4721 7860 1.618837 AGAACCTCGCAGCTTTAGTGA 59.381 47.619 0.00 0.00 0.00 3.41
4851 7991 5.772672 AGTAGAGCTAGACTACATGATTGGG 59.227 44.000 21.15 0.00 41.56 4.12
4999 8139 4.952957 AGCTCTATCTCACAAGTTAGCTGA 59.047 41.667 0.00 0.00 0.00 4.26
5064 8204 0.748450 ATCCATGCAAGCCATTTCCG 59.252 50.000 0.00 0.00 29.71 4.30
5148 8290 4.347876 TGGTTGATGTAGATGAGTATGGGG 59.652 45.833 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.