Multiple sequence alignment - TraesCS3B01G483500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G483500 chr3B 100.000 5622 0 0 1 5622 730230085 730235706 0.000000e+00 10382.0
1 TraesCS3B01G483500 chr3B 78.593 995 158 33 2448 3421 730342875 730343835 1.930000e-169 606.0
2 TraesCS3B01G483500 chr3B 100.000 243 0 0 6019 6261 730236103 730236345 3.440000e-122 449.0
3 TraesCS3B01G483500 chr3B 78.442 552 100 17 2880 3416 730314149 730314696 6.010000e-90 342.0
4 TraesCS3B01G483500 chr3B 81.467 259 32 12 2466 2720 730313691 730313937 1.380000e-46 198.0
5 TraesCS3B01G483500 chr3D 93.678 4318 198 28 1308 5606 550649970 550654231 0.000000e+00 6392.0
6 TraesCS3B01G483500 chr3D 91.148 1254 74 16 17 1252 550648028 550649262 0.000000e+00 1666.0
7 TraesCS3B01G483500 chr3D 85.030 167 21 3 1052 1217 550650228 550650391 3.880000e-37 167.0
8 TraesCS3B01G483500 chr3D 79.916 239 37 9 3900 4132 551079060 551079293 1.400000e-36 165.0
9 TraesCS3B01G483500 chr3D 82.883 111 16 3 1543 1653 551200914 551201021 5.170000e-16 97.1
10 TraesCS3B01G483500 chr3A 92.501 4214 229 33 1308 5498 687524432 687528581 0.000000e+00 5951.0
11 TraesCS3B01G483500 chr3A 88.998 1227 86 17 17 1221 687522473 687523672 0.000000e+00 1472.0
12 TraesCS3B01G483500 chr3A 79.230 987 156 31 2448 3410 687674804 687675765 5.290000e-180 641.0
13 TraesCS3B01G483500 chr3A 80.296 203 26 11 1052 1245 687524692 687524889 2.350000e-29 141.0
14 TraesCS3B01G483500 chr3A 89.247 93 8 2 6022 6113 610054367 610054276 1.430000e-21 115.0
15 TraesCS3B01G483500 chr3A 92.754 69 3 2 2018 2085 584475432 584475365 1.440000e-16 99.0
16 TraesCS3B01G483500 chr3A 80.357 112 17 4 1543 1653 688348252 688348359 5.200000e-11 80.5
17 TraesCS3B01G483500 chr5D 85.062 241 25 10 6024 6260 512396131 512395898 1.050000e-57 235.0
18 TraesCS3B01G483500 chr5D 75.972 283 57 10 3125 3401 469728894 469728617 1.090000e-27 135.0
19 TraesCS3B01G483500 chr6A 82.917 240 31 8 6024 6260 528987254 528987486 2.290000e-49 207.0
20 TraesCS3B01G483500 chr7B 80.567 247 35 10 6025 6259 593561937 593562182 1.790000e-40 178.0
21 TraesCS3B01G483500 chr2A 79.583 240 44 5 6023 6259 754028473 754028236 3.880000e-37 167.0
22 TraesCS3B01G483500 chr2B 80.455 220 31 11 6046 6261 728393077 728393288 2.340000e-34 158.0
23 TraesCS3B01G483500 chr6D 84.034 119 17 2 6144 6261 9214786 9214669 5.130000e-21 113.0
24 TraesCS3B01G483500 chr7D 79.394 165 26 7 6024 6182 564073846 564073684 6.640000e-20 110.0
25 TraesCS3B01G483500 chr5A 74.007 277 57 12 3127 3401 590677970 590677707 1.440000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G483500 chr3B 730230085 730236345 6260 False 5415.500000 10382 100.0000 1 6261 2 chr3B.!!$F2 6260
1 TraesCS3B01G483500 chr3B 730342875 730343835 960 False 606.000000 606 78.5930 2448 3421 1 chr3B.!!$F1 973
2 TraesCS3B01G483500 chr3B 730313691 730314696 1005 False 270.000000 342 79.9545 2466 3416 2 chr3B.!!$F3 950
3 TraesCS3B01G483500 chr3D 550648028 550654231 6203 False 4029.000000 6392 92.4130 17 5606 2 chr3D.!!$F4 5589
4 TraesCS3B01G483500 chr3A 687522473 687528581 6108 False 2521.333333 5951 87.2650 17 5498 3 chr3A.!!$F3 5481
5 TraesCS3B01G483500 chr3A 687674804 687675765 961 False 641.000000 641 79.2300 2448 3410 1 chr3A.!!$F1 962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 798 1.006922 CGTGAGAGTGAGCAGTGCA 60.007 57.895 19.2 0.0 0.00 4.57 F
1420 2167 0.034756 TAATGACCCATCGCCCATCG 59.965 55.000 0.0 0.0 40.15 3.84 F
1983 2740 0.036577 TGGCTTCTCTTGCTCTGCTC 60.037 55.000 0.0 0.0 0.00 4.26 F
2033 2790 1.078426 GCAGTATGAGGGTGCCGTT 60.078 57.895 0.0 0.0 39.69 4.44 F
2235 2994 2.433145 ACAGGCGATGTCACTGCG 60.433 61.111 0.0 0.0 37.75 5.18 F
4197 5054 1.267574 TAGGCAGAAGGAGTGGGCAG 61.268 60.000 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 2551 0.035630 GCTGTGAGAGCTGGTGGATT 60.036 55.000 0.00 0.0 45.21 3.01 R
3051 3893 1.173043 TTTTGCATAAGCCACCTCCG 58.827 50.000 0.00 0.0 41.13 4.63 R
3785 4642 5.181748 GCTTCTACATCCACATCAGAGTTT 58.818 41.667 0.00 0.0 0.00 2.66 R
3850 4707 9.573133 CATGGAAATAAACATAAGAGTCCAAAC 57.427 33.333 0.00 0.0 37.45 2.93 R
4306 5172 1.889829 CGGCCAATGGGTTACTCAAAA 59.110 47.619 2.24 0.0 36.17 2.44 R
6025 6894 0.244721 AACCTACGGCGTACACCTTC 59.755 55.000 16.97 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.711547 GGGCTCTTGGTAGAATATGGGT 59.288 50.000 0.00 0.00 0.00 4.51
119 120 4.583073 GGGTAATACAGGAAAAATCGCCAT 59.417 41.667 0.00 0.00 0.00 4.40
130 131 7.592533 CAGGAAAAATCGCCATAATGATTAGTG 59.407 37.037 0.00 0.00 33.85 2.74
268 269 4.523943 TGTTGCCAAAAGAAGCTCACATAT 59.476 37.500 0.00 0.00 0.00 1.78
269 270 5.010922 TGTTGCCAAAAGAAGCTCACATATT 59.989 36.000 0.00 0.00 0.00 1.28
270 271 6.208402 TGTTGCCAAAAGAAGCTCACATATTA 59.792 34.615 0.00 0.00 0.00 0.98
271 272 7.093814 TGTTGCCAAAAGAAGCTCACATATTAT 60.094 33.333 0.00 0.00 0.00 1.28
272 273 8.405531 GTTGCCAAAAGAAGCTCACATATTATA 58.594 33.333 0.00 0.00 0.00 0.98
273 274 8.158169 TGCCAAAAGAAGCTCACATATTATAG 57.842 34.615 0.00 0.00 0.00 1.31
274 275 7.229306 TGCCAAAAGAAGCTCACATATTATAGG 59.771 37.037 0.00 0.00 0.00 2.57
435 444 9.734620 TGCATATACAAAGAAAAGTATTCATGC 57.265 29.630 10.88 10.88 40.12 4.06
476 485 3.988379 TTGAGAAAGTGTTCACATGGC 57.012 42.857 5.74 0.00 34.80 4.40
486 495 3.742369 GTGTTCACATGGCAATGAAAAGG 59.258 43.478 16.42 0.00 36.62 3.11
494 503 1.405933 GGCAATGAAAAGGGTCCATGC 60.406 52.381 0.00 0.00 0.00 4.06
506 515 3.053095 AGGGTCCATGCATCTCTCAAAAT 60.053 43.478 0.00 0.00 0.00 1.82
573 584 9.612066 AAAGAAACAGCAAAAAGGAAAATGATA 57.388 25.926 0.00 0.00 0.00 2.15
574 585 9.612066 AAGAAACAGCAAAAAGGAAAATGATAA 57.388 25.926 0.00 0.00 0.00 1.75
575 586 9.612066 AGAAACAGCAAAAAGGAAAATGATAAA 57.388 25.926 0.00 0.00 0.00 1.40
639 657 3.497942 GGGCGATTTGTCCCTTATATGGT 60.498 47.826 4.10 0.00 39.46 3.55
744 774 1.601759 CCACTGACCAAGGCCACAG 60.602 63.158 5.01 8.82 36.58 3.66
748 778 2.360475 GACCAAGGCCACAGGAGC 60.360 66.667 5.01 0.00 0.00 4.70
749 779 4.335647 ACCAAGGCCACAGGAGCG 62.336 66.667 5.01 0.00 0.00 5.03
764 794 3.177920 GCGCGTGAGAGTGAGCAG 61.178 66.667 8.43 0.00 0.00 4.24
768 798 1.006922 CGTGAGAGTGAGCAGTGCA 60.007 57.895 19.20 0.00 0.00 4.57
834 864 3.718434 TGGATAAGGGTGATCTTCAGCAT 59.282 43.478 8.74 0.00 45.96 3.79
863 893 6.162777 GTCCAGCAGATATTATCTTGGAGAC 58.837 44.000 20.37 13.71 43.43 3.36
913 943 6.362820 GCTACGCAGGTTGTACTATAAAGATC 59.637 42.308 0.00 0.00 0.00 2.75
914 944 5.279384 ACGCAGGTTGTACTATAAAGATCG 58.721 41.667 0.00 0.00 0.00 3.69
915 945 5.066893 ACGCAGGTTGTACTATAAAGATCGA 59.933 40.000 0.00 0.00 0.00 3.59
916 946 6.150318 CGCAGGTTGTACTATAAAGATCGAT 58.850 40.000 0.00 0.00 0.00 3.59
957 987 4.133078 ACATAGTACGGTACCTGAGTAGC 58.867 47.826 19.46 1.14 42.39 3.58
1043 1073 1.440708 CTGCTGTTGCTCCTCTCTTG 58.559 55.000 0.00 0.00 40.48 3.02
1045 1075 1.141657 TGCTGTTGCTCCTCTCTTGTT 59.858 47.619 0.00 0.00 40.48 2.83
1051 1081 2.175202 TGCTCCTCTCTTGTTCTCCTC 58.825 52.381 0.00 0.00 0.00 3.71
1053 1083 2.107366 CTCCTCTCTTGTTCTCCTCCC 58.893 57.143 0.00 0.00 0.00 4.30
1134 1164 2.538449 CGCATACCAGGTAACGAATGAC 59.462 50.000 16.82 2.81 46.39 3.06
1137 1167 0.248289 ACCAGGTAACGAATGACCCG 59.752 55.000 0.00 0.00 46.39 5.28
1140 1170 1.997606 CAGGTAACGAATGACCCGAAC 59.002 52.381 0.00 0.00 46.39 3.95
1148 1178 2.094390 CGAATGACCCGAACTAGTTCCA 60.094 50.000 26.12 19.07 36.27 3.53
1194 1224 8.988064 TTTGTTTGCGCATATTTTATAGGAAA 57.012 26.923 12.75 0.00 0.00 3.13
1210 1240 3.513750 AAAGGCTGTGGACCCTGCC 62.514 63.158 17.63 17.63 46.53 4.85
1219 1249 0.042581 TGGACCCTGCCTCTCATGTA 59.957 55.000 0.00 0.00 0.00 2.29
1220 1250 1.204146 GGACCCTGCCTCTCATGTAA 58.796 55.000 0.00 0.00 0.00 2.41
1221 1251 1.771255 GGACCCTGCCTCTCATGTAAT 59.229 52.381 0.00 0.00 0.00 1.89
1222 1252 2.972713 GGACCCTGCCTCTCATGTAATA 59.027 50.000 0.00 0.00 0.00 0.98
1223 1253 3.391296 GGACCCTGCCTCTCATGTAATAA 59.609 47.826 0.00 0.00 0.00 1.40
1255 1285 5.646606 ACAAACGAACAAACAGTTATGCTT 58.353 33.333 0.00 0.00 41.51 3.91
1259 1289 9.388346 CAAACGAACAAACAGTTATGCTTATTA 57.612 29.630 0.00 0.00 41.51 0.98
1309 2051 2.351350 GGACACCAACAAATAACTGCCG 60.351 50.000 0.00 0.00 0.00 5.69
1311 2053 0.601057 ACCAACAAATAACTGCCGGC 59.399 50.000 22.73 22.73 0.00 6.13
1314 2056 0.540830 AACAAATAACTGCCGGCCCA 60.541 50.000 26.77 4.79 0.00 5.36
1337 2079 0.036010 CTCGCCCATCTGGTTCAACT 60.036 55.000 0.00 0.00 36.04 3.16
1340 2082 1.168714 GCCCATCTGGTTCAACTGTC 58.831 55.000 0.00 0.00 36.04 3.51
1343 2085 1.001974 CCATCTGGTTCAACTGTCCGA 59.998 52.381 0.00 0.00 0.00 4.55
1352 2099 3.328382 TCAACTGTCCGAGTTAATGGG 57.672 47.619 0.00 0.00 43.52 4.00
1355 2102 0.810031 CTGTCCGAGTTAATGGGCCG 60.810 60.000 0.00 0.00 0.00 6.13
1420 2167 0.034756 TAATGACCCATCGCCCATCG 59.965 55.000 0.00 0.00 40.15 3.84
1421 2168 2.680974 AATGACCCATCGCCCATCGG 62.681 60.000 0.00 0.00 39.05 4.18
1431 2178 2.591753 CCCATCGGCCATCACTGT 59.408 61.111 2.24 0.00 0.00 3.55
1432 2179 1.077501 CCCATCGGCCATCACTGTT 60.078 57.895 2.24 0.00 0.00 3.16
1433 2180 1.097547 CCCATCGGCCATCACTGTTC 61.098 60.000 2.24 0.00 0.00 3.18
1437 2184 0.669318 TCGGCCATCACTGTTCGTTC 60.669 55.000 2.24 0.00 0.00 3.95
1444 2191 4.441792 CCATCACTGTTCGTTCCATCATA 58.558 43.478 0.00 0.00 0.00 2.15
1473 2220 1.531423 CGAGGCCGTCCTATAAGCTA 58.469 55.000 0.00 0.00 44.46 3.32
1534 2284 1.101331 CATGGCCTTCTTCTTCCAGC 58.899 55.000 3.32 0.00 31.36 4.85
1538 2288 0.393673 GCCTTCTTCTTCCAGCTCCC 60.394 60.000 0.00 0.00 0.00 4.30
1656 2411 1.434696 CGCGTACCAGGTAACGGAT 59.565 57.895 17.83 0.00 46.39 4.18
1662 2417 2.176247 ACCAGGTAACGGATGATCCT 57.824 50.000 10.18 0.00 46.39 3.24
1666 2421 3.306364 CCAGGTAACGGATGATCCTGATC 60.306 52.174 10.18 0.06 45.76 2.92
1678 2433 1.144936 CCTGATCAGTTCGGGCTCC 59.855 63.158 21.11 0.00 43.99 4.70
1685 2440 1.674057 AGTTCGGGCTCCAACTGAG 59.326 57.895 0.00 0.00 44.47 3.35
1737 2494 1.994507 CTCTGGGCCCTGCTTCTCT 60.995 63.158 25.70 0.00 0.00 3.10
1741 2498 0.252696 TGGGCCCTGCTTCTCTTCTA 60.253 55.000 25.70 0.00 0.00 2.10
1747 2504 3.558109 GCCCTGCTTCTCTTCTAAACAGT 60.558 47.826 0.00 0.00 0.00 3.55
1788 2545 3.334691 CAAGTGTTCGCTAGGATCCAAA 58.665 45.455 15.82 0.00 0.00 3.28
1789 2546 3.914426 AGTGTTCGCTAGGATCCAAAT 57.086 42.857 15.82 0.00 0.00 2.32
1790 2547 4.222124 AGTGTTCGCTAGGATCCAAATT 57.778 40.909 15.82 0.00 0.00 1.82
1791 2548 4.589908 AGTGTTCGCTAGGATCCAAATTT 58.410 39.130 15.82 0.00 0.00 1.82
1792 2549 4.636206 AGTGTTCGCTAGGATCCAAATTTC 59.364 41.667 15.82 0.00 0.00 2.17
1793 2550 3.945285 TGTTCGCTAGGATCCAAATTTCC 59.055 43.478 15.82 0.00 0.00 3.13
1794 2551 3.924114 TCGCTAGGATCCAAATTTCCA 57.076 42.857 15.82 0.00 34.27 3.53
1795 2552 4.229304 TCGCTAGGATCCAAATTTCCAA 57.771 40.909 15.82 0.00 34.27 3.53
1839 2596 3.181470 GCCCAACAAGTTAACAACCACAT 60.181 43.478 8.61 0.00 0.00 3.21
1845 2602 6.458232 ACAAGTTAACAACCACATAAGCAA 57.542 33.333 8.61 0.00 0.00 3.91
1846 2603 7.049799 ACAAGTTAACAACCACATAAGCAAT 57.950 32.000 8.61 0.00 0.00 3.56
1847 2604 7.496747 ACAAGTTAACAACCACATAAGCAATT 58.503 30.769 8.61 0.00 0.00 2.32
1848 2605 7.984617 ACAAGTTAACAACCACATAAGCAATTT 59.015 29.630 8.61 0.00 0.00 1.82
1849 2606 8.825745 CAAGTTAACAACCACATAAGCAATTTT 58.174 29.630 8.61 0.00 0.00 1.82
1850 2607 8.956533 AGTTAACAACCACATAAGCAATTTTT 57.043 26.923 8.61 0.00 0.00 1.94
1907 2664 7.859325 TTTATGTGGCTCTCTGGTTATTTAC 57.141 36.000 0.00 0.00 0.00 2.01
1934 2691 0.532573 CTCGTATGTGTGGCTCTGGT 59.467 55.000 0.00 0.00 0.00 4.00
1935 2692 0.973632 TCGTATGTGTGGCTCTGGTT 59.026 50.000 0.00 0.00 0.00 3.67
1936 2693 1.346395 TCGTATGTGTGGCTCTGGTTT 59.654 47.619 0.00 0.00 0.00 3.27
1937 2694 2.563620 TCGTATGTGTGGCTCTGGTTTA 59.436 45.455 0.00 0.00 0.00 2.01
1938 2695 2.671396 CGTATGTGTGGCTCTGGTTTAC 59.329 50.000 0.00 0.00 0.00 2.01
1939 2696 2.200373 ATGTGTGGCTCTGGTTTACC 57.800 50.000 0.00 0.00 0.00 2.85
1940 2697 0.109723 TGTGTGGCTCTGGTTTACCC 59.890 55.000 0.00 0.00 34.29 3.69
1941 2698 0.953960 GTGTGGCTCTGGTTTACCCG 60.954 60.000 0.00 0.00 35.15 5.28
1983 2740 0.036577 TGGCTTCTCTTGCTCTGCTC 60.037 55.000 0.00 0.00 0.00 4.26
1995 2752 2.093288 TGCTCTGCTCCTCTGGTTAATG 60.093 50.000 0.00 0.00 0.00 1.90
2012 2769 6.978080 TGGTTAATGTGCTCTGTTTTTCTTTC 59.022 34.615 0.00 0.00 0.00 2.62
2033 2790 1.078426 GCAGTATGAGGGTGCCGTT 60.078 57.895 0.00 0.00 39.69 4.44
2235 2994 2.433145 ACAGGCGATGTCACTGCG 60.433 61.111 0.00 0.00 37.75 5.18
2304 3063 5.573337 GGAACTTGAATTCCTTCTCCATG 57.427 43.478 2.27 0.00 44.24 3.66
2319 3078 9.973661 TCCTTCTCCATGTTAATTTGATCTTAA 57.026 29.630 0.00 0.00 0.00 1.85
2330 3089 9.803315 GTTAATTTGATCTTAAAGAATCCCACC 57.197 33.333 0.00 0.00 0.00 4.61
2331 3090 7.423844 AATTTGATCTTAAAGAATCCCACCC 57.576 36.000 0.00 0.00 0.00 4.61
2452 3212 8.788806 TGTTCCTTTGTTGTACACTAATAATGG 58.211 33.333 0.00 0.00 0.00 3.16
2711 3480 3.912496 TGAGCTAGTGCAACATGGTAT 57.088 42.857 0.00 0.00 41.43 2.73
2795 3567 8.520835 ACAACTATATCGTATATGCACAACAG 57.479 34.615 0.00 0.00 0.00 3.16
3125 3981 3.355378 CATTTCCTCACCAGTGGCATTA 58.645 45.455 9.78 0.00 0.00 1.90
3405 4262 7.278646 CCGAGAAAAATATCAAGTGAGTCATCA 59.721 37.037 0.00 0.00 0.00 3.07
3629 4486 7.759489 TCTAGGCAGTTTCAACACATTAATT 57.241 32.000 0.00 0.00 0.00 1.40
3653 4510 6.899393 TCATGGACAATAAAAAGACTGCTT 57.101 33.333 0.00 0.00 35.37 3.91
3785 4642 6.897966 ACTCTTCTTGGAGTTATCCTATGACA 59.102 38.462 0.00 0.00 46.80 3.58
3850 4707 2.997303 TCGTGTTCGGATGGTAACATTG 59.003 45.455 0.00 0.00 46.92 2.82
3895 4752 6.634805 TCCATGTTCTAGAGAGTTCACAATC 58.365 40.000 0.00 0.00 0.00 2.67
4197 5054 1.267574 TAGGCAGAAGGAGTGGGCAG 61.268 60.000 0.00 0.00 0.00 4.85
4271 5137 9.273016 GCACACTGTTAATGTATATATTGACCT 57.727 33.333 12.55 0.00 0.00 3.85
4306 5172 4.154195 GCCACTTCTCAAAATACACACGAT 59.846 41.667 0.00 0.00 0.00 3.73
4450 5316 8.443953 AGCCTGAACTATTTTTAGACATGATC 57.556 34.615 0.00 0.00 0.00 2.92
4518 5384 4.814147 TGACTACACTCAGAGCTCAAATG 58.186 43.478 17.77 10.80 0.00 2.32
4591 5457 6.930667 AATTTCTTTTGCTTGCAGAATGTT 57.069 29.167 0.00 0.00 39.31 2.71
4594 5460 3.638160 TCTTTTGCTTGCAGAATGTTCCT 59.362 39.130 0.00 0.00 39.31 3.36
4645 5511 2.698803 CAATGTGTGCTGCAGTACCTA 58.301 47.619 28.83 19.01 0.00 3.08
4663 5529 3.458487 ACCTAACGAAAGCCTATGGGAAT 59.542 43.478 0.00 0.00 33.58 3.01
4664 5530 3.815401 CCTAACGAAAGCCTATGGGAATG 59.185 47.826 0.00 0.00 33.58 2.67
4740 5606 5.479306 TCTCCAATTTTCCGTTCTACAGAG 58.521 41.667 0.00 0.00 0.00 3.35
4775 5642 3.433709 TGTCACAATGTTTTTGCAGACG 58.566 40.909 0.00 0.00 33.34 4.18
4821 5688 9.213799 CTAATTTCACTAATATCCTCAGCCTTC 57.786 37.037 0.00 0.00 0.00 3.46
4861 5728 4.931601 GTGTTGCATCTAATGACACTCTCA 59.068 41.667 8.05 0.00 35.98 3.27
4962 5829 6.619801 AAGTCACCAAGAATGTAGTTCAAC 57.380 37.500 0.00 0.00 39.39 3.18
4979 5846 1.002033 CAACTCAACAGCACTGCCTTC 60.002 52.381 0.00 0.00 0.00 3.46
4980 5847 0.181114 ACTCAACAGCACTGCCTTCA 59.819 50.000 0.00 0.00 0.00 3.02
4982 5849 0.107263 TCAACAGCACTGCCTTCACA 60.107 50.000 0.00 0.00 0.00 3.58
5001 5868 5.078949 TCACACAAAATGTCCAGGATTCAT 58.921 37.500 0.00 0.00 40.64 2.57
5006 5873 6.976349 CACAAAATGTCCAGGATTCATACATG 59.024 38.462 0.00 0.00 31.44 3.21
5018 5885 7.716560 CAGGATTCATACATGTTTATCCTGACA 59.283 37.037 30.52 6.32 46.79 3.58
5105 5972 1.979155 GAGTTCTTTGCAGGGCCCC 60.979 63.158 21.43 4.15 0.00 5.80
5211 6078 2.094854 GCTTCCTGAAGAACAATGGCAG 60.095 50.000 11.00 0.00 40.79 4.85
5241 6108 1.463831 GAACGAGCTCGACAGTACAGA 59.536 52.381 40.58 0.00 43.02 3.41
5245 6112 2.353269 CGAGCTCGACAGTACAGAATCT 59.647 50.000 32.06 0.00 43.02 2.40
5278 6145 5.522460 GCAATGAGCCGTAAAACAGATAGTA 59.478 40.000 0.00 0.00 37.23 1.82
5432 6299 2.815503 GGCGGTTTAGGTGTGTTGTAAT 59.184 45.455 0.00 0.00 0.00 1.89
5477 6345 6.524586 GCAAATTAACCAGACAATTCTCTTCG 59.475 38.462 0.00 0.00 0.00 3.79
5508 6376 4.141321 TCAATAGATTGAGCCCTTCATGCT 60.141 41.667 0.70 0.00 41.51 3.79
5514 6383 1.380302 AGCCCTTCATGCTCCGTTT 59.620 52.632 0.00 0.00 32.41 3.60
5606 6475 3.118334 TGACCTTTTCCTCGTGTTGGTTA 60.118 43.478 0.00 0.00 0.00 2.85
5607 6476 3.208594 ACCTTTTCCTCGTGTTGGTTAC 58.791 45.455 0.00 0.00 0.00 2.50
5608 6477 3.118149 ACCTTTTCCTCGTGTTGGTTACT 60.118 43.478 0.00 0.00 0.00 2.24
5609 6478 3.881089 CCTTTTCCTCGTGTTGGTTACTT 59.119 43.478 0.00 0.00 0.00 2.24
5610 6479 4.024302 CCTTTTCCTCGTGTTGGTTACTTC 60.024 45.833 0.00 0.00 0.00 3.01
5611 6480 2.427232 TCCTCGTGTTGGTTACTTCG 57.573 50.000 0.00 0.00 0.00 3.79
5612 6481 0.788391 CCTCGTGTTGGTTACTTCGC 59.212 55.000 0.00 0.00 0.00 4.70
5613 6482 1.604693 CCTCGTGTTGGTTACTTCGCT 60.605 52.381 0.00 0.00 0.00 4.93
5614 6483 2.132762 CTCGTGTTGGTTACTTCGCTT 58.867 47.619 0.00 0.00 0.00 4.68
5615 6484 2.129607 TCGTGTTGGTTACTTCGCTTC 58.870 47.619 0.00 0.00 0.00 3.86
5616 6485 1.136721 CGTGTTGGTTACTTCGCTTCG 60.137 52.381 0.00 0.00 0.00 3.79
5617 6486 1.193874 GTGTTGGTTACTTCGCTTCGG 59.806 52.381 0.00 0.00 0.00 4.30
5618 6487 1.202557 TGTTGGTTACTTCGCTTCGGT 60.203 47.619 0.00 0.00 0.00 4.69
5619 6488 2.035704 TGTTGGTTACTTCGCTTCGGTA 59.964 45.455 0.00 0.00 0.00 4.02
5620 6489 3.059166 GTTGGTTACTTCGCTTCGGTAA 58.941 45.455 0.00 0.00 0.00 2.85
5621 6490 2.676076 TGGTTACTTCGCTTCGGTAAC 58.324 47.619 0.00 0.00 42.33 2.50
6037 6906 1.089920 TCGACTAGAAGGTGTACGCC 58.910 55.000 18.11 18.11 0.00 5.68
6038 6907 0.247974 CGACTAGAAGGTGTACGCCG 60.248 60.000 19.53 7.72 0.00 6.46
6039 6908 0.807496 GACTAGAAGGTGTACGCCGT 59.193 55.000 19.53 16.90 0.00 5.68
6040 6909 2.009774 GACTAGAAGGTGTACGCCGTA 58.990 52.381 19.53 11.51 0.00 4.02
6041 6910 2.012673 ACTAGAAGGTGTACGCCGTAG 58.987 52.381 19.53 20.77 0.00 3.51
6057 6926 2.187707 CGTAGGTTCGTACAATTCCCG 58.812 52.381 0.00 0.00 0.00 5.14
6058 6927 2.543641 GTAGGTTCGTACAATTCCCGG 58.456 52.381 0.00 0.00 0.00 5.73
6059 6928 0.392060 AGGTTCGTACAATTCCCGGC 60.392 55.000 0.00 0.00 0.00 6.13
6060 6929 1.698714 GGTTCGTACAATTCCCGGCG 61.699 60.000 0.00 0.00 0.00 6.46
6061 6930 2.101835 TTCGTACAATTCCCGGCGC 61.102 57.895 0.00 0.00 0.00 6.53
6062 6931 2.783241 TTCGTACAATTCCCGGCGCA 62.783 55.000 10.83 0.00 0.00 6.09
6063 6932 2.789249 GTACAATTCCCGGCGCAC 59.211 61.111 10.83 0.00 0.00 5.34
6064 6933 2.036006 GTACAATTCCCGGCGCACA 61.036 57.895 10.83 0.00 0.00 4.57
6065 6934 2.036006 TACAATTCCCGGCGCACAC 61.036 57.895 10.83 0.00 0.00 3.82
6066 6935 4.114997 CAATTCCCGGCGCACACC 62.115 66.667 10.83 0.00 0.00 4.16
6076 6945 3.402681 CGCACACCCCTCCCTCAT 61.403 66.667 0.00 0.00 0.00 2.90
6077 6946 2.273449 GCACACCCCTCCCTCATG 59.727 66.667 0.00 0.00 0.00 3.07
6078 6947 3.001514 CACACCCCTCCCTCATGG 58.998 66.667 0.00 0.00 0.00 3.66
6095 6964 4.716003 GGCTCAGCCCGTTTAGTT 57.284 55.556 3.37 0.00 44.06 2.24
6096 6965 2.942641 GGCTCAGCCCGTTTAGTTT 58.057 52.632 3.37 0.00 44.06 2.66
6097 6966 1.244816 GGCTCAGCCCGTTTAGTTTT 58.755 50.000 3.37 0.00 44.06 2.43
6098 6967 1.611977 GGCTCAGCCCGTTTAGTTTTT 59.388 47.619 3.37 0.00 44.06 1.94
6128 6997 8.865590 AAGTTTTAAACGTCAAAATAGCATGT 57.134 26.923 10.21 0.00 36.23 3.21
6129 6998 8.502161 AGTTTTAAACGTCAAAATAGCATGTC 57.498 30.769 10.21 0.00 36.23 3.06
6130 6999 7.593644 AGTTTTAAACGTCAAAATAGCATGTCC 59.406 33.333 10.21 0.00 36.23 4.02
6131 7000 4.434713 AAACGTCAAAATAGCATGTCCC 57.565 40.909 0.00 0.00 0.00 4.46
6132 7001 3.066291 ACGTCAAAATAGCATGTCCCA 57.934 42.857 0.00 0.00 0.00 4.37
6133 7002 3.620488 ACGTCAAAATAGCATGTCCCAT 58.380 40.909 0.00 0.00 0.00 4.00
6134 7003 3.627577 ACGTCAAAATAGCATGTCCCATC 59.372 43.478 0.00 0.00 0.00 3.51
6135 7004 3.879295 CGTCAAAATAGCATGTCCCATCT 59.121 43.478 0.00 0.00 0.00 2.90
6136 7005 5.056480 CGTCAAAATAGCATGTCCCATCTA 58.944 41.667 0.00 0.00 0.00 1.98
6137 7006 5.178252 CGTCAAAATAGCATGTCCCATCTAG 59.822 44.000 0.00 0.00 0.00 2.43
6138 7007 5.471456 GTCAAAATAGCATGTCCCATCTAGG 59.529 44.000 0.00 0.00 37.03 3.02
6139 7008 5.369404 TCAAAATAGCATGTCCCATCTAGGA 59.631 40.000 0.00 0.00 41.22 2.94
6140 7009 6.044754 TCAAAATAGCATGTCCCATCTAGGAT 59.955 38.462 0.00 0.00 41.22 3.24
6141 7010 6.460103 AAATAGCATGTCCCATCTAGGATT 57.540 37.500 0.00 0.00 41.22 3.01
6142 7011 5.690464 ATAGCATGTCCCATCTAGGATTC 57.310 43.478 0.00 0.00 41.22 2.52
6143 7012 2.301296 AGCATGTCCCATCTAGGATTCG 59.699 50.000 0.00 0.00 41.22 3.34
6144 7013 2.300152 GCATGTCCCATCTAGGATTCGA 59.700 50.000 0.00 0.00 41.22 3.71
6145 7014 3.244215 GCATGTCCCATCTAGGATTCGAA 60.244 47.826 0.00 0.00 41.22 3.71
6146 7015 4.564406 GCATGTCCCATCTAGGATTCGAAT 60.564 45.833 11.20 11.20 41.22 3.34
6147 7016 5.555017 CATGTCCCATCTAGGATTCGAATT 58.445 41.667 12.81 0.00 41.22 2.17
6148 7017 4.960938 TGTCCCATCTAGGATTCGAATTG 58.039 43.478 12.81 5.21 41.22 2.32
6149 7018 4.653801 TGTCCCATCTAGGATTCGAATTGA 59.346 41.667 12.81 8.96 41.22 2.57
6150 7019 5.221521 TGTCCCATCTAGGATTCGAATTGAG 60.222 44.000 12.81 9.89 41.22 3.02
6151 7020 4.901849 TCCCATCTAGGATTCGAATTGAGT 59.098 41.667 12.81 0.23 41.22 3.41
6152 7021 5.011125 TCCCATCTAGGATTCGAATTGAGTC 59.989 44.000 12.81 0.00 41.22 3.36
6159 7028 4.465040 GATTCGAATTGAGTCCTCATGC 57.535 45.455 12.81 0.00 39.64 4.06
6160 7029 3.333029 TTCGAATTGAGTCCTCATGCA 57.667 42.857 0.00 0.00 39.64 3.96
6161 7030 2.621338 TCGAATTGAGTCCTCATGCAC 58.379 47.619 0.00 0.00 39.64 4.57
6162 7031 2.234661 TCGAATTGAGTCCTCATGCACT 59.765 45.455 0.00 0.00 39.64 4.40
6163 7032 3.447229 TCGAATTGAGTCCTCATGCACTA 59.553 43.478 0.00 0.00 39.64 2.74
6164 7033 4.100035 TCGAATTGAGTCCTCATGCACTAT 59.900 41.667 0.00 0.00 39.64 2.12
6165 7034 5.301805 TCGAATTGAGTCCTCATGCACTATA 59.698 40.000 0.00 0.00 39.64 1.31
6166 7035 6.015095 TCGAATTGAGTCCTCATGCACTATAT 60.015 38.462 0.00 0.00 39.64 0.86
6167 7036 6.090493 CGAATTGAGTCCTCATGCACTATATG 59.910 42.308 0.00 0.00 39.64 1.78
6168 7037 5.876651 TTGAGTCCTCATGCACTATATGT 57.123 39.130 0.00 0.00 39.64 2.29
6169 7038 6.976934 TTGAGTCCTCATGCACTATATGTA 57.023 37.500 0.00 0.00 39.64 2.29
6170 7039 6.976934 TGAGTCCTCATGCACTATATGTAA 57.023 37.500 0.00 0.00 34.14 2.41
6171 7040 6.986250 TGAGTCCTCATGCACTATATGTAAG 58.014 40.000 0.00 0.00 34.14 2.34
6172 7041 6.551227 TGAGTCCTCATGCACTATATGTAAGT 59.449 38.462 0.00 0.00 34.14 2.24
6173 7042 6.753180 AGTCCTCATGCACTATATGTAAGTG 58.247 40.000 0.00 0.48 45.80 3.16
6174 7043 6.551227 AGTCCTCATGCACTATATGTAAGTGA 59.449 38.462 8.08 0.00 45.89 3.41
6175 7044 7.069950 AGTCCTCATGCACTATATGTAAGTGAA 59.930 37.037 8.08 0.00 45.89 3.18
6176 7045 7.169982 GTCCTCATGCACTATATGTAAGTGAAC 59.830 40.741 8.08 0.00 45.89 3.18
6177 7046 6.986231 CCTCATGCACTATATGTAAGTGAACA 59.014 38.462 8.08 0.00 45.89 3.18
6178 7047 7.495606 CCTCATGCACTATATGTAAGTGAACAA 59.504 37.037 8.08 0.00 45.89 2.83
6179 7048 8.196802 TCATGCACTATATGTAAGTGAACAAC 57.803 34.615 8.08 0.00 45.89 3.32
6180 7049 6.978343 TGCACTATATGTAAGTGAACAACC 57.022 37.500 8.08 0.00 45.89 3.77
6181 7050 6.468543 TGCACTATATGTAAGTGAACAACCA 58.531 36.000 8.08 0.00 45.89 3.67
6182 7051 7.109501 TGCACTATATGTAAGTGAACAACCAT 58.890 34.615 8.08 0.00 45.89 3.55
6183 7052 7.279981 TGCACTATATGTAAGTGAACAACCATC 59.720 37.037 8.08 0.00 45.89 3.51
6184 7053 7.495934 GCACTATATGTAAGTGAACAACCATCT 59.504 37.037 8.08 0.00 45.89 2.90
6185 7054 8.820933 CACTATATGTAAGTGAACAACCATCTG 58.179 37.037 0.00 0.00 45.89 2.90
6186 7055 7.987458 ACTATATGTAAGTGAACAACCATCTGG 59.013 37.037 0.00 0.00 42.17 3.86
6187 7056 3.750371 TGTAAGTGAACAACCATCTGGG 58.250 45.455 0.54 0.00 44.81 4.45
6188 7057 3.392947 TGTAAGTGAACAACCATCTGGGA 59.607 43.478 0.54 0.00 41.15 4.37
6189 7058 3.814504 AAGTGAACAACCATCTGGGAT 57.185 42.857 0.54 0.00 41.15 3.85
6190 7059 4.927267 AAGTGAACAACCATCTGGGATA 57.073 40.909 0.54 0.00 41.15 2.59
6191 7060 4.494091 AGTGAACAACCATCTGGGATAG 57.506 45.455 0.54 0.00 41.15 2.08
6192 7061 2.945668 GTGAACAACCATCTGGGATAGC 59.054 50.000 0.54 0.00 41.15 2.97
6193 7062 2.846206 TGAACAACCATCTGGGATAGCT 59.154 45.455 0.54 0.00 41.15 3.32
6194 7063 4.037222 TGAACAACCATCTGGGATAGCTA 58.963 43.478 0.00 0.00 41.15 3.32
6195 7064 4.473196 TGAACAACCATCTGGGATAGCTAA 59.527 41.667 0.00 0.00 41.15 3.09
6196 7065 5.132648 TGAACAACCATCTGGGATAGCTAAT 59.867 40.000 0.00 0.00 41.15 1.73
6197 7066 5.234466 ACAACCATCTGGGATAGCTAATC 57.766 43.478 0.00 0.00 41.15 1.75
6198 7067 4.910304 ACAACCATCTGGGATAGCTAATCT 59.090 41.667 0.00 0.00 41.15 2.40
6199 7068 5.221803 ACAACCATCTGGGATAGCTAATCTG 60.222 44.000 0.00 0.00 41.15 2.90
6200 7069 3.843027 ACCATCTGGGATAGCTAATCTGG 59.157 47.826 0.00 1.26 41.15 3.86
6201 7070 3.843027 CCATCTGGGATAGCTAATCTGGT 59.157 47.826 0.00 0.00 40.01 4.00
6202 7071 4.323333 CCATCTGGGATAGCTAATCTGGTG 60.323 50.000 0.00 1.55 40.01 4.17
6203 7072 3.928754 TCTGGGATAGCTAATCTGGTGT 58.071 45.455 0.00 0.00 34.75 4.16
6204 7073 3.643320 TCTGGGATAGCTAATCTGGTGTG 59.357 47.826 0.00 0.00 34.75 3.82
6205 7074 2.104792 TGGGATAGCTAATCTGGTGTGC 59.895 50.000 0.00 0.00 34.75 4.57
6206 7075 2.408050 GGATAGCTAATCTGGTGTGCG 58.592 52.381 0.00 0.00 34.75 5.34
6207 7076 2.035961 GGATAGCTAATCTGGTGTGCGA 59.964 50.000 0.00 0.00 34.75 5.10
6208 7077 3.492656 GGATAGCTAATCTGGTGTGCGAA 60.493 47.826 0.00 0.00 34.75 4.70
6209 7078 2.698855 AGCTAATCTGGTGTGCGAAT 57.301 45.000 0.00 0.00 0.00 3.34
6210 7079 2.991250 AGCTAATCTGGTGTGCGAATT 58.009 42.857 0.00 0.00 0.00 2.17
6211 7080 4.137116 AGCTAATCTGGTGTGCGAATTA 57.863 40.909 0.00 0.00 0.00 1.40
6212 7081 4.513442 AGCTAATCTGGTGTGCGAATTAA 58.487 39.130 0.00 0.00 0.00 1.40
6213 7082 4.332819 AGCTAATCTGGTGTGCGAATTAAC 59.667 41.667 0.00 0.00 0.00 2.01
6214 7083 4.495844 GCTAATCTGGTGTGCGAATTAACC 60.496 45.833 0.00 0.00 0.00 2.85
6215 7084 2.851263 TCTGGTGTGCGAATTAACCT 57.149 45.000 0.00 0.00 33.65 3.50
6216 7085 3.134574 TCTGGTGTGCGAATTAACCTT 57.865 42.857 0.00 0.00 33.65 3.50
6217 7086 2.811431 TCTGGTGTGCGAATTAACCTTG 59.189 45.455 0.00 0.00 33.65 3.61
6218 7087 1.268352 TGGTGTGCGAATTAACCTTGC 59.732 47.619 0.00 0.00 33.65 4.01
6219 7088 1.539827 GGTGTGCGAATTAACCTTGCT 59.460 47.619 0.00 0.00 0.00 3.91
6220 7089 2.030274 GGTGTGCGAATTAACCTTGCTT 60.030 45.455 0.00 0.00 0.00 3.91
6221 7090 3.552068 GGTGTGCGAATTAACCTTGCTTT 60.552 43.478 0.00 0.00 0.00 3.51
6222 7091 3.668656 GTGTGCGAATTAACCTTGCTTTC 59.331 43.478 0.00 0.00 0.00 2.62
6223 7092 3.568007 TGTGCGAATTAACCTTGCTTTCT 59.432 39.130 0.00 0.00 0.00 2.52
6224 7093 4.037446 TGTGCGAATTAACCTTGCTTTCTT 59.963 37.500 0.00 0.00 0.00 2.52
6225 7094 4.617223 GTGCGAATTAACCTTGCTTTCTTC 59.383 41.667 0.00 0.00 0.00 2.87
6226 7095 4.166523 GCGAATTAACCTTGCTTTCTTCC 58.833 43.478 0.00 0.00 0.00 3.46
6227 7096 4.082733 GCGAATTAACCTTGCTTTCTTCCT 60.083 41.667 0.00 0.00 0.00 3.36
6228 7097 5.393962 CGAATTAACCTTGCTTTCTTCCTG 58.606 41.667 0.00 0.00 0.00 3.86
6229 7098 5.048713 CGAATTAACCTTGCTTTCTTCCTGT 60.049 40.000 0.00 0.00 0.00 4.00
6230 7099 6.515035 CGAATTAACCTTGCTTTCTTCCTGTT 60.515 38.462 0.00 0.00 0.00 3.16
6231 7100 5.514274 TTAACCTTGCTTTCTTCCTGTTG 57.486 39.130 0.00 0.00 0.00 3.33
6232 7101 3.018423 ACCTTGCTTTCTTCCTGTTGT 57.982 42.857 0.00 0.00 0.00 3.32
6233 7102 2.689983 ACCTTGCTTTCTTCCTGTTGTG 59.310 45.455 0.00 0.00 0.00 3.33
6234 7103 2.544486 CCTTGCTTTCTTCCTGTTGTGC 60.544 50.000 0.00 0.00 0.00 4.57
6235 7104 0.662619 TGCTTTCTTCCTGTTGTGCG 59.337 50.000 0.00 0.00 0.00 5.34
6236 7105 0.944386 GCTTTCTTCCTGTTGTGCGA 59.056 50.000 0.00 0.00 0.00 5.10
6237 7106 1.069636 GCTTTCTTCCTGTTGTGCGAG 60.070 52.381 0.00 0.00 0.00 5.03
6238 7107 2.483876 CTTTCTTCCTGTTGTGCGAGA 58.516 47.619 0.00 0.00 0.00 4.04
6239 7108 2.839486 TTCTTCCTGTTGTGCGAGAT 57.161 45.000 0.00 0.00 0.00 2.75
6240 7109 3.953712 TTCTTCCTGTTGTGCGAGATA 57.046 42.857 0.00 0.00 0.00 1.98
6241 7110 3.953712 TCTTCCTGTTGTGCGAGATAA 57.046 42.857 0.00 0.00 0.00 1.75
6242 7111 4.265904 TCTTCCTGTTGTGCGAGATAAA 57.734 40.909 0.00 0.00 0.00 1.40
6243 7112 4.832248 TCTTCCTGTTGTGCGAGATAAAT 58.168 39.130 0.00 0.00 0.00 1.40
6244 7113 5.972935 TCTTCCTGTTGTGCGAGATAAATA 58.027 37.500 0.00 0.00 0.00 1.40
6245 7114 6.403049 TCTTCCTGTTGTGCGAGATAAATAA 58.597 36.000 0.00 0.00 0.00 1.40
6246 7115 6.312918 TCTTCCTGTTGTGCGAGATAAATAAC 59.687 38.462 0.00 0.00 0.00 1.89
6247 7116 4.565166 TCCTGTTGTGCGAGATAAATAACG 59.435 41.667 0.00 0.00 0.00 3.18
6254 7123 4.170292 GCGAGATAAATAACGCTAGGGA 57.830 45.455 14.59 0.00 46.06 4.20
6255 7124 4.553323 GCGAGATAAATAACGCTAGGGAA 58.447 43.478 14.59 1.37 46.06 3.97
6256 7125 4.986659 GCGAGATAAATAACGCTAGGGAAA 59.013 41.667 14.59 0.99 46.06 3.13
6257 7126 5.464389 GCGAGATAAATAACGCTAGGGAAAA 59.536 40.000 14.59 0.00 46.06 2.29
6258 7127 6.018507 GCGAGATAAATAACGCTAGGGAAAAA 60.019 38.462 14.59 0.00 46.06 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.783093 CAAGTTTAATCATACACTTTCCTGTGA 58.217 33.333 1.47 0.00 40.12 3.58
2 3 7.538678 GCAAGTTTAATCATACACTTTCCTGTG 59.461 37.037 0.00 0.00 43.07 3.66
3 4 7.309194 GGCAAGTTTAATCATACACTTTCCTGT 60.309 37.037 0.00 0.00 34.34 4.00
4 5 7.029563 GGCAAGTTTAATCATACACTTTCCTG 58.970 38.462 0.00 0.00 34.34 3.86
5 6 6.948309 AGGCAAGTTTAATCATACACTTTCCT 59.052 34.615 2.08 2.08 39.26 3.36
6 7 7.158099 AGGCAAGTTTAATCATACACTTTCC 57.842 36.000 0.00 0.00 36.17 3.13
7 8 9.476202 AAAAGGCAAGTTTAATCATACACTTTC 57.524 29.630 0.00 0.00 31.30 2.62
8 9 9.830975 AAAAAGGCAAGTTTAATCATACACTTT 57.169 25.926 0.00 0.00 31.30 2.66
9 10 9.260002 CAAAAAGGCAAGTTTAATCATACACTT 57.740 29.630 0.00 0.00 33.38 3.16
10 11 7.872483 CCAAAAAGGCAAGTTTAATCATACACT 59.128 33.333 0.00 0.00 0.00 3.55
11 12 7.117667 CCCAAAAAGGCAAGTTTAATCATACAC 59.882 37.037 0.00 0.00 35.39 2.90
12 13 7.158021 CCCAAAAAGGCAAGTTTAATCATACA 58.842 34.615 0.00 0.00 35.39 2.29
13 14 7.595311 CCCAAAAAGGCAAGTTTAATCATAC 57.405 36.000 0.00 0.00 35.39 2.39
41 42 6.445786 AGTTAGTCCAACCCATATTCTACCAA 59.554 38.462 0.00 0.00 37.93 3.67
56 57 0.179015 TGCCCGCAAAGTTAGTCCAA 60.179 50.000 0.00 0.00 0.00 3.53
119 120 3.721575 AGTGGGCCCATCACTAATCATTA 59.278 43.478 31.45 0.00 42.91 1.90
130 131 0.111061 TGCATATGAGTGGGCCCATC 59.889 55.000 31.45 24.94 0.00 3.51
328 335 5.119279 CCACTATTGAACACTTCTCTTCACG 59.881 44.000 0.00 0.00 0.00 4.35
417 426 5.617609 TCGACGCATGAATACTTTTCTTTG 58.382 37.500 0.00 0.00 0.00 2.77
435 444 9.914923 TCTCAAAACATGAAAAATATATCGACG 57.085 29.630 0.00 0.00 37.67 5.12
476 485 3.449737 AGATGCATGGACCCTTTTCATTG 59.550 43.478 2.46 0.00 0.00 2.82
486 495 3.949754 TGATTTTGAGAGATGCATGGACC 59.050 43.478 2.46 0.00 0.00 4.46
543 554 6.530019 TTCCTTTTTGCTGTTTCTTTCTCT 57.470 33.333 0.00 0.00 0.00 3.10
573 584 8.703336 GCATTATCGCTTTCTTTCTTTCTTTTT 58.297 29.630 0.00 0.00 0.00 1.94
574 585 7.329471 GGCATTATCGCTTTCTTTCTTTCTTTT 59.671 33.333 0.00 0.00 0.00 2.27
575 586 6.808704 GGCATTATCGCTTTCTTTCTTTCTTT 59.191 34.615 0.00 0.00 0.00 2.52
576 587 6.325596 GGCATTATCGCTTTCTTTCTTTCTT 58.674 36.000 0.00 0.00 0.00 2.52
577 588 5.163612 GGGCATTATCGCTTTCTTTCTTTCT 60.164 40.000 0.00 0.00 0.00 2.52
578 589 5.037385 GGGCATTATCGCTTTCTTTCTTTC 58.963 41.667 0.00 0.00 0.00 2.62
582 593 4.202050 ACATGGGCATTATCGCTTTCTTTC 60.202 41.667 0.00 0.00 0.00 2.62
639 657 2.483014 ACGGGCAAACACTTATAGCA 57.517 45.000 0.00 0.00 0.00 3.49
731 761 2.360475 GCTCCTGTGGCCTTGGTC 60.360 66.667 3.32 0.00 0.00 4.02
744 774 2.202544 CTCACTCTCACGCGCTCC 60.203 66.667 5.73 0.00 0.00 4.70
748 778 2.085262 CACTGCTCACTCTCACGCG 61.085 63.158 3.53 3.53 0.00 6.01
749 779 2.378858 GCACTGCTCACTCTCACGC 61.379 63.158 0.00 0.00 0.00 5.34
751 781 1.290491 GCTGCACTGCTCACTCTCAC 61.290 60.000 1.98 0.00 0.00 3.51
764 794 0.804989 GTGGTAGATTGTGGCTGCAC 59.195 55.000 0.50 0.00 0.00 4.57
768 798 2.027192 ACATTCGTGGTAGATTGTGGCT 60.027 45.455 0.00 0.00 34.60 4.75
834 864 5.894298 AGATAATATCTGCTGGACCACAA 57.106 39.130 1.35 0.00 38.44 3.33
913 943 1.136305 TCTTCTTAACCCTGGCGATCG 59.864 52.381 11.69 11.69 0.00 3.69
914 944 2.981859 TCTTCTTAACCCTGGCGATC 57.018 50.000 0.00 0.00 0.00 3.69
915 945 3.244770 TGTTTCTTCTTAACCCTGGCGAT 60.245 43.478 0.00 0.00 0.00 4.58
916 946 2.105134 TGTTTCTTCTTAACCCTGGCGA 59.895 45.455 0.00 0.00 0.00 5.54
957 987 0.460987 GATCACCCACCTTCTCTGCG 60.461 60.000 0.00 0.00 0.00 5.18
1018 1048 1.078567 GGAGCAACAGCAGGGAGAG 60.079 63.158 0.00 0.00 0.00 3.20
1043 1073 0.673956 GCCAAGAACGGGAGGAGAAC 60.674 60.000 0.00 0.00 0.00 3.01
1045 1075 0.836400 AAGCCAAGAACGGGAGGAGA 60.836 55.000 0.00 0.00 0.00 3.71
1051 1081 1.291877 CTCGTGAAGCCAAGAACGGG 61.292 60.000 0.00 0.00 36.70 5.28
1053 1083 0.319555 TCCTCGTGAAGCCAAGAACG 60.320 55.000 0.00 0.00 37.38 3.95
1134 1164 3.396260 TCAAGTTGGAACTAGTTCGGG 57.604 47.619 25.44 12.87 38.57 5.14
1171 1201 7.199766 CCTTTCCTATAAAATATGCGCAAACA 58.800 34.615 17.11 2.50 0.00 2.83
1172 1202 6.143919 GCCTTTCCTATAAAATATGCGCAAAC 59.856 38.462 17.11 0.00 0.00 2.93
1219 1249 9.909043 GTTTGTTCGTTTGTTTTGCTTATTATT 57.091 25.926 0.00 0.00 0.00 1.40
1220 1250 9.088512 TGTTTGTTCGTTTGTTTTGCTTATTAT 57.911 25.926 0.00 0.00 0.00 1.28
1221 1251 8.462143 TGTTTGTTCGTTTGTTTTGCTTATTA 57.538 26.923 0.00 0.00 0.00 0.98
1222 1252 7.117092 ACTGTTTGTTCGTTTGTTTTGCTTATT 59.883 29.630 0.00 0.00 0.00 1.40
1223 1253 6.588373 ACTGTTTGTTCGTTTGTTTTGCTTAT 59.412 30.769 0.00 0.00 0.00 1.73
1262 1292 9.770097 CACCTCTCATGTAATAATAAGACATGT 57.230 33.333 0.00 0.00 46.82 3.21
1264 1294 9.159254 TCCACCTCTCATGTAATAATAAGACAT 57.841 33.333 0.00 0.00 34.11 3.06
1265 1295 8.421784 GTCCACCTCTCATGTAATAATAAGACA 58.578 37.037 0.00 0.00 0.00 3.41
1266 1296 8.421784 TGTCCACCTCTCATGTAATAATAAGAC 58.578 37.037 0.00 0.00 0.00 3.01
1267 1297 8.421784 GTGTCCACCTCTCATGTAATAATAAGA 58.578 37.037 0.00 0.00 0.00 2.10
1286 1316 3.552068 GGCAGTTATTTGTTGGTGTCCAC 60.552 47.826 0.00 0.00 30.78 4.02
1288 1318 2.351350 CGGCAGTTATTTGTTGGTGTCC 60.351 50.000 0.00 0.00 0.00 4.02
1289 1319 2.351350 CCGGCAGTTATTTGTTGGTGTC 60.351 50.000 0.00 0.00 0.00 3.67
1294 1499 0.108851 GGGCCGGCAGTTATTTGTTG 60.109 55.000 30.85 0.00 0.00 3.33
1297 1502 0.102844 CATGGGCCGGCAGTTATTTG 59.897 55.000 30.85 11.32 0.00 2.32
1311 2053 1.227764 CAGATGGGCGAGACATGGG 60.228 63.158 0.00 0.00 0.00 4.00
1314 2056 0.179000 GAACCAGATGGGCGAGACAT 59.821 55.000 3.48 0.00 42.05 3.06
1325 2067 1.971357 ACTCGGACAGTTGAACCAGAT 59.029 47.619 0.00 0.00 26.56 2.90
1337 2079 1.219664 CGGCCCATTAACTCGGACA 59.780 57.895 0.00 0.00 0.00 4.02
1340 2082 2.900337 GCCGGCCCATTAACTCGG 60.900 66.667 18.11 0.00 43.13 4.63
1343 2085 2.595655 GAGGCCGGCCCATTAACT 59.404 61.111 41.72 22.43 36.58 2.24
1414 2161 1.077501 AACAGTGATGGCCGATGGG 60.078 57.895 0.00 0.00 0.00 4.00
1420 2167 0.605319 TGGAACGAACAGTGATGGCC 60.605 55.000 0.00 0.00 0.00 5.36
1421 2168 1.398390 GATGGAACGAACAGTGATGGC 59.602 52.381 0.00 0.00 0.00 4.40
1422 2169 2.698803 TGATGGAACGAACAGTGATGG 58.301 47.619 0.00 0.00 0.00 3.51
1423 2170 4.869861 TGTATGATGGAACGAACAGTGATG 59.130 41.667 0.00 0.00 0.00 3.07
1424 2171 5.084818 TGTATGATGGAACGAACAGTGAT 57.915 39.130 0.00 0.00 0.00 3.06
1425 2172 4.529109 TGTATGATGGAACGAACAGTGA 57.471 40.909 0.00 0.00 0.00 3.41
1426 2173 4.869861 TCATGTATGATGGAACGAACAGTG 59.130 41.667 0.00 0.00 0.00 3.66
1427 2174 5.084818 TCATGTATGATGGAACGAACAGT 57.915 39.130 0.00 0.00 0.00 3.55
1444 2191 2.107750 CGGCCTCGCTCATCATGT 59.892 61.111 0.00 0.00 0.00 3.21
1473 2220 2.115052 TGCTTTCGTGGCCATGGT 59.885 55.556 24.78 0.00 0.00 3.55
1513 2260 0.323725 TGGAAGAAGAAGGCCATGGC 60.324 55.000 29.47 29.47 41.06 4.40
1534 2284 3.013932 AAGCAGGAGCAGGGGGAG 61.014 66.667 0.00 0.00 45.49 4.30
1538 2288 1.145819 GCTAGAAGCAGGAGCAGGG 59.854 63.158 0.00 0.00 45.49 4.45
1588 2338 1.137825 GGAAGTCGCTCCTCGTGAG 59.862 63.158 1.12 1.12 44.47 3.51
1638 2388 0.868602 CATCCGTTACCTGGTACGCG 60.869 60.000 17.82 17.82 0.00 6.01
1656 2411 0.465705 GCCCGAACTGATCAGGATCA 59.534 55.000 26.08 11.22 44.83 2.92
1662 2417 0.036388 GTTGGAGCCCGAACTGATCA 60.036 55.000 0.00 0.00 0.00 2.92
1666 2421 3.972227 CAGTTGGAGCCCGAACTG 58.028 61.111 8.62 8.62 42.22 3.16
1678 2433 4.490799 GCGCAAGAAAACAAAACTCAGTTG 60.491 41.667 0.30 0.00 43.02 3.16
1685 2440 8.484008 TCTAAAATATGCGCAAGAAAACAAAAC 58.516 29.630 17.11 0.00 43.02 2.43
1737 2494 5.392767 TGGTTTGTTTGCACTGTTTAGAA 57.607 34.783 0.00 0.00 0.00 2.10
1741 2498 2.734079 CGTTGGTTTGTTTGCACTGTTT 59.266 40.909 0.00 0.00 0.00 2.83
1747 2504 1.996191 GCTTTCGTTGGTTTGTTTGCA 59.004 42.857 0.00 0.00 0.00 4.08
1788 2545 2.309755 TGAGAGCTGGTGGATTGGAAAT 59.690 45.455 0.00 0.00 0.00 2.17
1789 2546 1.704628 TGAGAGCTGGTGGATTGGAAA 59.295 47.619 0.00 0.00 0.00 3.13
1790 2547 1.003580 GTGAGAGCTGGTGGATTGGAA 59.996 52.381 0.00 0.00 0.00 3.53
1791 2548 0.615331 GTGAGAGCTGGTGGATTGGA 59.385 55.000 0.00 0.00 0.00 3.53
1792 2549 0.325933 TGTGAGAGCTGGTGGATTGG 59.674 55.000 0.00 0.00 0.00 3.16
1793 2550 1.735386 CTGTGAGAGCTGGTGGATTG 58.265 55.000 0.00 0.00 0.00 2.67
1794 2551 0.035630 GCTGTGAGAGCTGGTGGATT 60.036 55.000 0.00 0.00 45.21 3.01
1795 2552 1.601171 GCTGTGAGAGCTGGTGGAT 59.399 57.895 0.00 0.00 45.21 3.41
1820 2577 6.269315 TGCTTATGTGGTTGTTAACTTGTTG 58.731 36.000 7.22 0.00 0.00 3.33
1850 2607 8.715191 AACTAAAACATGCAGACAATGAAAAA 57.285 26.923 0.00 0.00 0.00 1.94
1853 2610 8.165239 ACTAACTAAAACATGCAGACAATGAA 57.835 30.769 0.00 0.00 0.00 2.57
1884 2641 7.195374 AGTAAATAACCAGAGAGCCACATAA 57.805 36.000 0.00 0.00 0.00 1.90
1886 2643 5.700402 AGTAAATAACCAGAGAGCCACAT 57.300 39.130 0.00 0.00 0.00 3.21
1887 2644 5.499004 AAGTAAATAACCAGAGAGCCACA 57.501 39.130 0.00 0.00 0.00 4.17
1888 2645 6.430000 TGAAAAGTAAATAACCAGAGAGCCAC 59.570 38.462 0.00 0.00 0.00 5.01
1889 2646 6.539173 TGAAAAGTAAATAACCAGAGAGCCA 58.461 36.000 0.00 0.00 0.00 4.75
1890 2647 7.175119 AGTTGAAAAGTAAATAACCAGAGAGCC 59.825 37.037 0.00 0.00 0.00 4.70
1891 2648 8.100508 AGTTGAAAAGTAAATAACCAGAGAGC 57.899 34.615 0.00 0.00 0.00 4.09
1892 2649 8.436200 CGAGTTGAAAAGTAAATAACCAGAGAG 58.564 37.037 0.00 0.00 0.00 3.20
1893 2650 7.929785 ACGAGTTGAAAAGTAAATAACCAGAGA 59.070 33.333 0.00 0.00 0.00 3.10
1907 2664 3.498397 AGCCACACATACGAGTTGAAAAG 59.502 43.478 0.00 0.00 0.00 2.27
1934 2691 2.415776 CGCAAGAGGTAAACGGGTAAA 58.584 47.619 0.00 0.00 43.02 2.01
1935 2692 1.940752 GCGCAAGAGGTAAACGGGTAA 60.941 52.381 0.30 0.00 43.02 2.85
1936 2693 0.390209 GCGCAAGAGGTAAACGGGTA 60.390 55.000 0.30 0.00 43.02 3.69
1937 2694 1.670083 GCGCAAGAGGTAAACGGGT 60.670 57.895 0.30 0.00 43.02 5.28
1938 2695 1.024579 ATGCGCAAGAGGTAAACGGG 61.025 55.000 17.11 0.00 43.02 5.28
1939 2696 0.802494 AATGCGCAAGAGGTAAACGG 59.198 50.000 17.11 0.00 43.02 4.44
1940 2697 2.611974 AAATGCGCAAGAGGTAAACG 57.388 45.000 17.11 0.00 43.02 3.60
1941 2698 3.851969 GCTAAAATGCGCAAGAGGTAAAC 59.148 43.478 17.11 0.00 43.02 2.01
1983 2740 3.340814 ACAGAGCACATTAACCAGAGG 57.659 47.619 0.00 0.00 0.00 3.69
1995 2752 4.362279 TGCATGAAAGAAAAACAGAGCAC 58.638 39.130 0.00 0.00 0.00 4.40
2012 2769 1.162181 CGGCACCCTCATACTGCATG 61.162 60.000 0.00 0.00 35.81 4.06
2033 2790 3.040206 GCTCCTGCCATCCTCAGCA 62.040 63.158 0.00 0.00 37.46 4.41
2122 2880 8.635765 ATTTGGTCACAATACTGACAATAAGT 57.364 30.769 2.00 0.00 42.17 2.24
2157 2916 9.458374 AGAATATTGTCAAACAAAGTTTTACCG 57.542 29.630 0.00 0.00 41.96 4.02
2230 2989 1.485294 TTGTGGTACCCATCCGCAGT 61.485 55.000 10.07 0.00 44.53 4.40
2304 3063 9.803315 GGTGGGATTCTTTAAGATCAAATTAAC 57.197 33.333 0.00 0.00 0.00 2.01
3051 3893 1.173043 TTTTGCATAAGCCACCTCCG 58.827 50.000 0.00 0.00 41.13 4.63
3405 4262 6.273071 GCTTCACTTTTAGTTTTGGACACAT 58.727 36.000 0.00 0.00 0.00 3.21
3603 4460 7.759489 TTAATGTGTTGAAACTGCCTAGAAT 57.241 32.000 0.00 0.00 0.00 2.40
3629 4486 6.899393 AGCAGTCTTTTTATTGTCCATGAA 57.101 33.333 0.00 0.00 0.00 2.57
3785 4642 5.181748 GCTTCTACATCCACATCAGAGTTT 58.818 41.667 0.00 0.00 0.00 2.66
3850 4707 9.573133 CATGGAAATAAACATAAGAGTCCAAAC 57.427 33.333 0.00 0.00 37.45 2.93
4306 5172 1.889829 CGGCCAATGGGTTACTCAAAA 59.110 47.619 2.24 0.00 36.17 2.44
4497 5363 5.065704 TCATTTGAGCTCTGAGTGTAGTC 57.934 43.478 16.19 0.00 0.00 2.59
4506 5372 6.432607 TCTTGCTAAATCATTTGAGCTCTG 57.567 37.500 16.19 5.11 35.89 3.35
4518 5384 7.573968 AAGGTGGACAATATCTTGCTAAATC 57.426 36.000 0.00 0.00 35.69 2.17
4579 5445 5.415077 AGAAGATGAAGGAACATTCTGCAAG 59.585 40.000 0.00 0.00 0.00 4.01
4591 5457 4.263068 GGGTCACTTTGAGAAGATGAAGGA 60.263 45.833 0.00 0.00 36.69 3.36
4594 5460 3.557054 CCGGGTCACTTTGAGAAGATGAA 60.557 47.826 0.00 0.00 36.69 2.57
4629 5495 1.068474 CGTTAGGTACTGCAGCACAC 58.932 55.000 18.65 11.66 41.52 3.82
4645 5511 3.366052 ACATTCCCATAGGCTTTCGTT 57.634 42.857 0.00 0.00 0.00 3.85
4663 5529 6.544928 TTCTCTTGCACATAGATAGGAACA 57.455 37.500 0.00 0.00 0.00 3.18
4664 5530 6.426328 CCATTCTCTTGCACATAGATAGGAAC 59.574 42.308 0.00 0.00 0.00 3.62
4767 5634 0.104855 AGAAGCTGTGACGTCTGCAA 59.895 50.000 17.92 0.00 35.31 4.08
4775 5642 8.485976 AATTAGAATGAACTAGAAGCTGTGAC 57.514 34.615 0.00 0.00 0.00 3.67
4815 5682 0.990818 GGGAGATGAAGGGGAAGGCT 60.991 60.000 0.00 0.00 0.00 4.58
4821 5688 1.308216 ACCTGGGGAGATGAAGGGG 60.308 63.158 0.00 0.00 33.87 4.79
4893 5760 3.307410 CCTTCAGTGTGCTACCCATGTAA 60.307 47.826 0.00 0.00 0.00 2.41
4925 5792 4.211125 TGGTGACTTTTGTTGAATGGCTA 58.789 39.130 0.00 0.00 0.00 3.93
4962 5829 0.590195 GTGAAGGCAGTGCTGTTGAG 59.410 55.000 16.11 0.00 0.00 3.02
4979 5846 4.852134 TGAATCCTGGACATTTTGTGTG 57.148 40.909 0.00 0.00 42.36 3.82
4980 5847 6.009589 TGTATGAATCCTGGACATTTTGTGT 58.990 36.000 0.00 0.00 45.83 3.72
4982 5849 6.664816 ACATGTATGAATCCTGGACATTTTGT 59.335 34.615 0.00 1.87 0.00 2.83
5001 5868 7.223971 GCGAAACTATGTCAGGATAAACATGTA 59.776 37.037 0.00 0.00 36.78 2.29
5006 5873 6.043411 AGAGCGAAACTATGTCAGGATAAAC 58.957 40.000 0.00 0.00 0.00 2.01
5018 5885 4.162320 TCCATTCCTGAAGAGCGAAACTAT 59.838 41.667 0.00 0.00 0.00 2.12
5025 5892 2.687842 GCTCCATTCCTGAAGAGCG 58.312 57.895 5.66 0.00 42.02 5.03
5047 5914 5.043737 ACCAGACAAAGTAGCCTTTTACA 57.956 39.130 0.00 0.00 38.87 2.41
5105 5972 1.002033 GTATAGGCCGTACCGTGACTG 60.002 57.143 9.47 0.00 46.52 3.51
5211 6078 1.849219 CGAGCTCGTTCTGAACATAGC 59.151 52.381 27.79 25.67 39.22 2.97
5241 6108 2.277969 CTCATTGCAGAGCACGAGATT 58.722 47.619 10.53 0.00 39.34 2.40
5388 6255 1.000274 CATGAGACATGGCCATGCATG 60.000 52.381 39.74 35.42 42.39 4.06
5432 6299 1.874872 CGGAAAACCGAGCAAAACCTA 59.125 47.619 2.30 0.00 34.88 3.08
5454 6322 6.349363 GCCGAAGAGAATTGTCTGGTTAATTT 60.349 38.462 5.78 0.00 32.80 1.82
5463 6331 6.173339 TGATAAAAGCCGAAGAGAATTGTCT 58.827 36.000 0.00 0.00 36.55 3.41
5477 6345 5.772169 AGGGCTCAATCTATTGATAAAAGCC 59.228 40.000 19.76 19.76 44.92 4.35
5546 6415 9.312904 TCTTCCAAATCTTGTATGAAAATCCTT 57.687 29.630 0.00 0.00 0.00 3.36
5576 6445 5.054477 CACGAGGAAAAGGTCAAAGAGTTA 58.946 41.667 0.00 0.00 0.00 2.24
5587 6456 3.473625 AGTAACCAACACGAGGAAAAGG 58.526 45.455 0.00 0.00 0.00 3.11
5588 6457 4.318546 CGAAGTAACCAACACGAGGAAAAG 60.319 45.833 0.00 0.00 33.91 2.27
6018 6887 1.089920 GGCGTACACCTTCTAGTCGA 58.910 55.000 0.00 0.00 0.00 4.20
6019 6888 0.247974 CGGCGTACACCTTCTAGTCG 60.248 60.000 0.00 0.00 0.00 4.18
6020 6889 0.807496 ACGGCGTACACCTTCTAGTC 59.193 55.000 12.58 0.00 0.00 2.59
6021 6890 2.012673 CTACGGCGTACACCTTCTAGT 58.987 52.381 16.97 0.00 0.00 2.57
6022 6891 1.332997 CCTACGGCGTACACCTTCTAG 59.667 57.143 16.97 4.58 0.00 2.43
6023 6892 1.340017 ACCTACGGCGTACACCTTCTA 60.340 52.381 16.97 0.00 0.00 2.10
6024 6893 0.610232 ACCTACGGCGTACACCTTCT 60.610 55.000 16.97 0.00 0.00 2.85
6025 6894 0.244721 AACCTACGGCGTACACCTTC 59.755 55.000 16.97 0.00 0.00 3.46
6026 6895 0.244721 GAACCTACGGCGTACACCTT 59.755 55.000 16.97 4.66 0.00 3.50
6027 6896 1.885871 GAACCTACGGCGTACACCT 59.114 57.895 16.97 0.59 0.00 4.00
6028 6897 1.514873 CGAACCTACGGCGTACACC 60.515 63.158 16.97 4.93 0.00 4.16
6029 6898 0.446222 TACGAACCTACGGCGTACAC 59.554 55.000 16.97 6.79 39.24 2.90
6030 6899 2.847725 TACGAACCTACGGCGTACA 58.152 52.632 16.97 0.00 39.24 2.90
6032 6901 1.160989 TTGTACGAACCTACGGCGTA 58.839 50.000 19.80 19.80 39.24 4.42
6033 6902 0.527565 ATTGTACGAACCTACGGCGT 59.472 50.000 19.64 19.64 41.58 5.68
6034 6903 1.585214 GAATTGTACGAACCTACGGCG 59.415 52.381 4.80 4.80 37.61 6.46
6035 6904 1.929169 GGAATTGTACGAACCTACGGC 59.071 52.381 0.00 0.00 37.61 5.68
6036 6905 2.543641 GGGAATTGTACGAACCTACGG 58.456 52.381 8.84 0.00 37.61 4.02
6037 6906 2.187707 CGGGAATTGTACGAACCTACG 58.812 52.381 8.84 0.00 39.31 3.51
6038 6907 2.543641 CCGGGAATTGTACGAACCTAC 58.456 52.381 0.00 0.00 0.00 3.18
6039 6908 1.134729 GCCGGGAATTGTACGAACCTA 60.135 52.381 2.18 0.00 0.00 3.08
6040 6909 0.392060 GCCGGGAATTGTACGAACCT 60.392 55.000 2.18 0.00 0.00 3.50
6041 6910 1.698714 CGCCGGGAATTGTACGAACC 61.699 60.000 2.18 0.00 0.00 3.62
6042 6911 1.711500 CGCCGGGAATTGTACGAAC 59.289 57.895 2.18 0.00 0.00 3.95
6043 6912 2.101835 GCGCCGGGAATTGTACGAA 61.102 57.895 2.18 0.00 0.00 3.85
6044 6913 2.509786 GCGCCGGGAATTGTACGA 60.510 61.111 2.18 0.00 0.00 3.43
6045 6914 2.816083 TGCGCCGGGAATTGTACG 60.816 61.111 4.18 0.00 0.00 3.67
6046 6915 2.036006 TGTGCGCCGGGAATTGTAC 61.036 57.895 4.18 0.00 0.00 2.90
6047 6916 2.036006 GTGTGCGCCGGGAATTGTA 61.036 57.895 4.18 0.00 0.00 2.41
6048 6917 3.361977 GTGTGCGCCGGGAATTGT 61.362 61.111 4.18 0.00 0.00 2.71
6049 6918 4.114997 GGTGTGCGCCGGGAATTG 62.115 66.667 4.18 0.00 0.00 2.32
6059 6928 3.402681 ATGAGGGAGGGGTGTGCG 61.403 66.667 0.00 0.00 0.00 5.34
6060 6929 2.273449 CATGAGGGAGGGGTGTGC 59.727 66.667 0.00 0.00 0.00 4.57
6061 6930 3.001514 CCATGAGGGAGGGGTGTG 58.998 66.667 0.00 0.00 40.01 3.82
6102 6971 9.953697 ACATGCTATTTTGACGTTTAAAACTTA 57.046 25.926 12.07 4.07 30.64 2.24
6103 6972 8.865590 ACATGCTATTTTGACGTTTAAAACTT 57.134 26.923 12.07 3.29 30.64 2.66
6104 6973 7.593644 GGACATGCTATTTTGACGTTTAAAACT 59.406 33.333 12.07 2.02 30.64 2.66
6105 6974 7.148869 GGGACATGCTATTTTGACGTTTAAAAC 60.149 37.037 12.07 3.66 30.64 2.43
6106 6975 6.864165 GGGACATGCTATTTTGACGTTTAAAA 59.136 34.615 12.17 12.17 0.00 1.52
6107 6976 6.016192 TGGGACATGCTATTTTGACGTTTAAA 60.016 34.615 0.00 0.00 0.00 1.52
6108 6977 5.473846 TGGGACATGCTATTTTGACGTTTAA 59.526 36.000 0.00 0.00 0.00 1.52
6109 6978 5.004448 TGGGACATGCTATTTTGACGTTTA 58.996 37.500 0.00 0.00 0.00 2.01
6110 6979 3.823873 TGGGACATGCTATTTTGACGTTT 59.176 39.130 0.00 0.00 0.00 3.60
6111 6980 3.417101 TGGGACATGCTATTTTGACGTT 58.583 40.909 0.00 0.00 0.00 3.99
6112 6981 3.066291 TGGGACATGCTATTTTGACGT 57.934 42.857 0.00 0.00 0.00 4.34
6127 6996 5.215252 TCAATTCGAATCCTAGATGGGAC 57.785 43.478 11.83 0.00 38.30 4.46
6128 6997 4.901849 ACTCAATTCGAATCCTAGATGGGA 59.098 41.667 11.83 0.00 39.95 4.37
6129 6998 5.220710 ACTCAATTCGAATCCTAGATGGG 57.779 43.478 11.83 7.33 36.20 4.00
6130 6999 5.011533 AGGACTCAATTCGAATCCTAGATGG 59.988 44.000 14.24 4.50 38.04 3.51
6131 7000 6.095432 AGGACTCAATTCGAATCCTAGATG 57.905 41.667 14.24 7.12 38.04 2.90
6132 7001 5.835819 TGAGGACTCAATTCGAATCCTAGAT 59.164 40.000 15.51 0.00 39.96 1.98
6133 7002 5.201243 TGAGGACTCAATTCGAATCCTAGA 58.799 41.667 15.51 9.08 39.96 2.43
6134 7003 5.521906 TGAGGACTCAATTCGAATCCTAG 57.478 43.478 15.51 13.03 39.96 3.02
6135 7004 5.740224 GCATGAGGACTCAATTCGAATCCTA 60.740 44.000 15.51 6.75 43.58 2.94
6136 7005 4.701765 CATGAGGACTCAATTCGAATCCT 58.298 43.478 15.47 15.47 43.58 3.24
6137 7006 3.249559 GCATGAGGACTCAATTCGAATCC 59.750 47.826 11.83 8.90 43.58 3.01
6138 7007 3.873361 TGCATGAGGACTCAATTCGAATC 59.127 43.478 11.83 0.00 43.58 2.52
6139 7008 3.624861 GTGCATGAGGACTCAATTCGAAT 59.375 43.478 4.39 4.39 43.58 3.34
6140 7009 3.002791 GTGCATGAGGACTCAATTCGAA 58.997 45.455 6.06 0.00 43.58 3.71
6141 7010 2.234661 AGTGCATGAGGACTCAATTCGA 59.765 45.455 6.06 0.00 43.59 3.71
6142 7011 2.625737 AGTGCATGAGGACTCAATTCG 58.374 47.619 6.06 0.00 43.59 3.34
6143 7012 6.933521 ACATATAGTGCATGAGGACTCAATTC 59.066 38.462 6.06 0.00 43.59 2.17
6144 7013 6.835174 ACATATAGTGCATGAGGACTCAATT 58.165 36.000 6.06 0.00 43.59 2.32
6145 7014 6.430962 ACATATAGTGCATGAGGACTCAAT 57.569 37.500 6.06 0.00 43.59 2.57
6146 7015 5.876651 ACATATAGTGCATGAGGACTCAA 57.123 39.130 6.06 0.00 43.59 3.02
6147 7016 6.551227 ACTTACATATAGTGCATGAGGACTCA 59.449 38.462 4.26 4.26 43.59 3.41
6148 7017 6.865726 CACTTACATATAGTGCATGAGGACTC 59.134 42.308 0.00 0.00 43.59 3.36
6150 7019 6.749139 TCACTTACATATAGTGCATGAGGAC 58.251 40.000 0.00 0.00 42.12 3.85
6151 7020 6.976934 TCACTTACATATAGTGCATGAGGA 57.023 37.500 0.00 0.00 42.12 3.71
6152 7021 6.986231 TGTTCACTTACATATAGTGCATGAGG 59.014 38.462 0.00 0.00 42.12 3.86
6153 7022 8.331022 GTTGTTCACTTACATATAGTGCATGAG 58.669 37.037 0.00 0.00 42.12 2.90
6154 7023 7.279981 GGTTGTTCACTTACATATAGTGCATGA 59.720 37.037 0.00 0.00 42.12 3.07
6155 7024 7.065683 TGGTTGTTCACTTACATATAGTGCATG 59.934 37.037 0.00 0.00 42.12 4.06
6156 7025 7.109501 TGGTTGTTCACTTACATATAGTGCAT 58.890 34.615 0.00 0.00 42.12 3.96
6157 7026 6.468543 TGGTTGTTCACTTACATATAGTGCA 58.531 36.000 0.00 0.00 42.12 4.57
6158 7027 6.978343 TGGTTGTTCACTTACATATAGTGC 57.022 37.500 0.00 0.00 42.12 4.40
6159 7028 8.820933 CAGATGGTTGTTCACTTACATATAGTG 58.179 37.037 0.00 0.00 43.41 2.74
6160 7029 7.987458 CCAGATGGTTGTTCACTTACATATAGT 59.013 37.037 0.00 0.00 0.00 2.12
6161 7030 7.442364 CCCAGATGGTTGTTCACTTACATATAG 59.558 40.741 0.00 0.00 0.00 1.31
6162 7031 7.126573 TCCCAGATGGTTGTTCACTTACATATA 59.873 37.037 0.00 0.00 34.77 0.86
6163 7032 6.069673 TCCCAGATGGTTGTTCACTTACATAT 60.070 38.462 0.00 0.00 34.77 1.78
6164 7033 5.249622 TCCCAGATGGTTGTTCACTTACATA 59.750 40.000 0.00 0.00 34.77 2.29
6165 7034 4.042809 TCCCAGATGGTTGTTCACTTACAT 59.957 41.667 0.00 0.00 34.77 2.29
6166 7035 3.392947 TCCCAGATGGTTGTTCACTTACA 59.607 43.478 0.00 0.00 34.77 2.41
6167 7036 4.015872 TCCCAGATGGTTGTTCACTTAC 57.984 45.455 0.00 0.00 34.77 2.34
6168 7037 4.927267 ATCCCAGATGGTTGTTCACTTA 57.073 40.909 0.00 0.00 34.77 2.24
6169 7038 3.814504 ATCCCAGATGGTTGTTCACTT 57.185 42.857 0.00 0.00 34.77 3.16
6170 7039 3.370953 GCTATCCCAGATGGTTGTTCACT 60.371 47.826 0.00 0.00 34.77 3.41
6171 7040 2.945668 GCTATCCCAGATGGTTGTTCAC 59.054 50.000 0.00 0.00 34.77 3.18
6172 7041 2.846206 AGCTATCCCAGATGGTTGTTCA 59.154 45.455 0.00 0.00 34.77 3.18
6173 7042 3.567478 AGCTATCCCAGATGGTTGTTC 57.433 47.619 0.00 0.00 34.77 3.18
6174 7043 5.370880 AGATTAGCTATCCCAGATGGTTGTT 59.629 40.000 0.00 0.00 33.45 2.83
6175 7044 4.910304 AGATTAGCTATCCCAGATGGTTGT 59.090 41.667 0.00 0.00 33.45 3.32
6176 7045 5.243981 CAGATTAGCTATCCCAGATGGTTG 58.756 45.833 0.00 0.00 33.45 3.77
6177 7046 4.288105 CCAGATTAGCTATCCCAGATGGTT 59.712 45.833 0.00 0.00 33.45 3.67
6178 7047 3.843027 CCAGATTAGCTATCCCAGATGGT 59.157 47.826 0.00 0.00 33.45 3.55
6179 7048 3.843027 ACCAGATTAGCTATCCCAGATGG 59.157 47.826 0.00 0.00 33.45 3.51
6180 7049 4.285517 ACACCAGATTAGCTATCCCAGATG 59.714 45.833 0.00 0.00 33.45 2.90
6181 7050 4.285517 CACACCAGATTAGCTATCCCAGAT 59.714 45.833 0.00 0.00 33.45 2.90
6182 7051 3.643320 CACACCAGATTAGCTATCCCAGA 59.357 47.826 0.00 0.00 33.45 3.86
6183 7052 3.805108 GCACACCAGATTAGCTATCCCAG 60.805 52.174 0.00 0.00 33.45 4.45
6184 7053 2.104792 GCACACCAGATTAGCTATCCCA 59.895 50.000 0.00 0.00 33.45 4.37
6185 7054 2.772287 GCACACCAGATTAGCTATCCC 58.228 52.381 0.00 0.00 33.45 3.85
6186 7055 2.035961 TCGCACACCAGATTAGCTATCC 59.964 50.000 0.00 0.00 33.45 2.59
6187 7056 3.371102 TCGCACACCAGATTAGCTATC 57.629 47.619 0.00 0.00 0.00 2.08
6188 7057 3.819564 TTCGCACACCAGATTAGCTAT 57.180 42.857 0.00 0.00 0.00 2.97
6189 7058 3.819564 ATTCGCACACCAGATTAGCTA 57.180 42.857 0.00 0.00 0.00 3.32
6190 7059 2.698855 ATTCGCACACCAGATTAGCT 57.301 45.000 0.00 0.00 0.00 3.32
6191 7060 4.495844 GGTTAATTCGCACACCAGATTAGC 60.496 45.833 0.00 0.00 0.00 3.09
6192 7061 4.876107 AGGTTAATTCGCACACCAGATTAG 59.124 41.667 0.00 0.00 0.00 1.73
6193 7062 4.839121 AGGTTAATTCGCACACCAGATTA 58.161 39.130 0.00 0.00 0.00 1.75
6194 7063 3.686016 AGGTTAATTCGCACACCAGATT 58.314 40.909 0.00 0.00 0.00 2.40
6195 7064 3.350219 AGGTTAATTCGCACACCAGAT 57.650 42.857 0.00 0.00 0.00 2.90
6196 7065 2.811431 CAAGGTTAATTCGCACACCAGA 59.189 45.455 0.00 0.00 0.00 3.86
6197 7066 2.668279 GCAAGGTTAATTCGCACACCAG 60.668 50.000 0.00 0.00 0.00 4.00
6198 7067 1.268352 GCAAGGTTAATTCGCACACCA 59.732 47.619 0.00 0.00 0.00 4.17
6199 7068 1.539827 AGCAAGGTTAATTCGCACACC 59.460 47.619 0.00 0.00 0.00 4.16
6200 7069 2.989422 AGCAAGGTTAATTCGCACAC 57.011 45.000 0.00 0.00 0.00 3.82
6201 7070 3.568007 AGAAAGCAAGGTTAATTCGCACA 59.432 39.130 0.00 0.00 0.00 4.57
6202 7071 4.160736 AGAAAGCAAGGTTAATTCGCAC 57.839 40.909 0.00 0.00 0.00 5.34
6203 7072 4.320935 GGAAGAAAGCAAGGTTAATTCGCA 60.321 41.667 0.00 0.00 0.00 5.10
6204 7073 4.082733 AGGAAGAAAGCAAGGTTAATTCGC 60.083 41.667 0.00 0.00 0.00 4.70
6205 7074 5.048713 ACAGGAAGAAAGCAAGGTTAATTCG 60.049 40.000 0.00 0.00 0.00 3.34
6206 7075 6.332735 ACAGGAAGAAAGCAAGGTTAATTC 57.667 37.500 0.00 0.00 0.00 2.17
6207 7076 6.098266 ACAACAGGAAGAAAGCAAGGTTAATT 59.902 34.615 0.00 0.00 0.00 1.40
6208 7077 5.598417 ACAACAGGAAGAAAGCAAGGTTAAT 59.402 36.000 0.00 0.00 0.00 1.40
6209 7078 4.953579 ACAACAGGAAGAAAGCAAGGTTAA 59.046 37.500 0.00 0.00 0.00 2.01
6210 7079 4.338118 CACAACAGGAAGAAAGCAAGGTTA 59.662 41.667 0.00 0.00 0.00 2.85
6211 7080 3.131046 CACAACAGGAAGAAAGCAAGGTT 59.869 43.478 0.00 0.00 0.00 3.50
6212 7081 2.689983 CACAACAGGAAGAAAGCAAGGT 59.310 45.455 0.00 0.00 0.00 3.50
6213 7082 2.544486 GCACAACAGGAAGAAAGCAAGG 60.544 50.000 0.00 0.00 0.00 3.61
6214 7083 2.735823 GCACAACAGGAAGAAAGCAAG 58.264 47.619 0.00 0.00 0.00 4.01
6215 7084 1.065401 CGCACAACAGGAAGAAAGCAA 59.935 47.619 0.00 0.00 0.00 3.91
6216 7085 0.662619 CGCACAACAGGAAGAAAGCA 59.337 50.000 0.00 0.00 0.00 3.91
6217 7086 0.944386 TCGCACAACAGGAAGAAAGC 59.056 50.000 0.00 0.00 0.00 3.51
6218 7087 2.483876 TCTCGCACAACAGGAAGAAAG 58.516 47.619 0.00 0.00 0.00 2.62
6219 7088 2.613026 TCTCGCACAACAGGAAGAAA 57.387 45.000 0.00 0.00 0.00 2.52
6220 7089 2.839486 ATCTCGCACAACAGGAAGAA 57.161 45.000 0.00 0.00 0.00 2.52
6221 7090 3.953712 TTATCTCGCACAACAGGAAGA 57.046 42.857 0.00 0.00 0.00 2.87
6222 7091 6.478588 GTTATTTATCTCGCACAACAGGAAG 58.521 40.000 0.00 0.00 0.00 3.46
6223 7092 5.062934 CGTTATTTATCTCGCACAACAGGAA 59.937 40.000 0.00 0.00 0.00 3.36
6224 7093 4.565166 CGTTATTTATCTCGCACAACAGGA 59.435 41.667 0.00 0.00 0.00 3.86
6225 7094 4.782195 GCGTTATTTATCTCGCACAACAGG 60.782 45.833 0.00 0.00 46.40 4.00
6226 7095 4.263800 GCGTTATTTATCTCGCACAACAG 58.736 43.478 0.00 0.00 46.40 3.16
6227 7096 4.253352 GCGTTATTTATCTCGCACAACA 57.747 40.909 0.00 0.00 46.40 3.33
6234 7103 7.473027 TTTTTCCCTAGCGTTATTTATCTCG 57.527 36.000 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.