Multiple sequence alignment - TraesCS3B01G483200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G483200 chr3B 100.000 3254 0 0 1 3254 729978004 729974751 0.000000e+00 6010.0
1 TraesCS3B01G483200 chr3B 92.698 986 46 10 2284 3254 189417709 189418683 0.000000e+00 1399.0
2 TraesCS3B01G483200 chr3B 92.480 984 50 7 2286 3254 826326420 826327394 0.000000e+00 1386.0
3 TraesCS3B01G483200 chr3B 85.942 1316 149 14 974 2286 730165251 730163969 0.000000e+00 1373.0
4 TraesCS3B01G483200 chr3B 93.377 151 7 3 1 148 730165816 730165666 1.520000e-53 220.0
5 TraesCS3B01G483200 chr3B 92.500 120 8 1 2094 2213 730163513 730163395 1.550000e-38 171.0
6 TraesCS3B01G483200 chr3B 75.688 218 43 9 17 229 39569671 39569459 2.070000e-17 100.0
7 TraesCS3B01G483200 chr1A 93.203 971 59 7 2285 3254 588981781 588982745 0.000000e+00 1421.0
8 TraesCS3B01G483200 chr1A 93.267 505 27 5 2286 2783 432583615 432584119 0.000000e+00 737.0
9 TraesCS3B01G483200 chr1A 100.000 67 0 0 908 974 334075218 334075284 1.230000e-24 124.0
10 TraesCS3B01G483200 chr5B 92.394 986 49 9 2285 3254 345516483 345515508 0.000000e+00 1382.0
11 TraesCS3B01G483200 chr5B 92.175 984 50 10 2286 3254 430139287 430138316 0.000000e+00 1365.0
12 TraesCS3B01G483200 chr5B 91.972 984 52 10 2286 3254 430244185 430243214 0.000000e+00 1354.0
13 TraesCS3B01G483200 chr2A 91.895 987 52 15 2270 3254 755714098 755715058 0.000000e+00 1354.0
14 TraesCS3B01G483200 chr1B 91.878 985 53 9 2285 3254 235506255 235507227 0.000000e+00 1351.0
15 TraesCS3B01G483200 chr1B 98.890 721 7 1 2282 3001 608858283 608859003 0.000000e+00 1286.0
16 TraesCS3B01G483200 chr1B 94.400 500 26 2 2286 2783 681777181 681776682 0.000000e+00 767.0
17 TraesCS3B01G483200 chr3A 94.208 846 46 3 2286 3130 514491128 514490285 0.000000e+00 1288.0
18 TraesCS3B01G483200 chr3A 82.577 1102 176 12 974 2070 687509266 687508176 0.000000e+00 957.0
19 TraesCS3B01G483200 chr3A 86.767 733 77 10 1551 2280 687501763 687501048 0.000000e+00 798.0
20 TraesCS3B01G483200 chr3A 89.267 559 59 1 974 1531 687502313 687501755 0.000000e+00 699.0
21 TraesCS3B01G483200 chr3A 84.278 706 103 5 995 1699 687492454 687491756 0.000000e+00 682.0
22 TraesCS3B01G483200 chr3A 84.804 408 61 1 1069 1476 687296614 687297020 3.020000e-110 409.0
23 TraesCS3B01G483200 chr3A 82.432 444 66 7 1693 2124 687484134 687483691 8.520000e-101 377.0
24 TraesCS3B01G483200 chr3D 84.134 1311 181 17 974 2280 550441508 550442795 0.000000e+00 1243.0
25 TraesCS3B01G483200 chr3D 82.802 1285 208 9 974 2253 550595729 550594453 0.000000e+00 1136.0
26 TraesCS3B01G483200 chr3D 87.312 733 84 6 1551 2280 550472232 550471506 0.000000e+00 830.0
27 TraesCS3B01G483200 chr3D 94.980 498 24 1 2286 2783 555332362 555331866 0.000000e+00 780.0
28 TraesCS3B01G483200 chr3D 87.852 568 58 7 974 1531 550472790 550472224 0.000000e+00 656.0
29 TraesCS3B01G483200 chr3D 85.741 533 71 5 998 1528 550460691 550460162 2.840000e-155 558.0
30 TraesCS3B01G483200 chr3D 90.643 342 29 2 1769 2107 550601281 550600940 4.950000e-123 451.0
31 TraesCS3B01G483200 chr3D 83.402 488 72 7 1795 2275 550628744 550628259 8.280000e-121 444.0
32 TraesCS3B01G483200 chr3D 87.293 362 46 0 974 1335 550625741 550625380 6.500000e-112 414.0
33 TraesCS3B01G483200 chr3D 93.561 264 10 2 1 257 550594126 550593863 1.420000e-103 387.0
34 TraesCS3B01G483200 chr3D 88.583 254 15 7 349 588 550514873 550514620 2.450000e-76 296.0
35 TraesCS3B01G483200 chr3D 91.237 194 17 0 2093 2286 550599866 550599673 6.920000e-67 265.0
36 TraesCS3B01G483200 chr3D 91.444 187 15 1 2094 2280 550599220 550599035 4.170000e-64 255.0
37 TraesCS3B01G483200 chr3D 85.135 222 27 2 1551 1772 550614299 550614084 4.230000e-54 222.0
38 TraesCS3B01G483200 chr3D 92.632 95 7 0 609 703 550514629 550514535 1.570000e-28 137.0
39 TraesCS3B01G483200 chr3D 100.000 67 0 0 908 974 202613651 202613585 1.230000e-24 124.0
40 TraesCS3B01G483200 chr3D 97.561 41 1 0 308 348 550592051 550592011 1.620000e-08 71.3
41 TraesCS3B01G483200 chr5D 95.800 500 20 1 2285 2783 366761654 366761155 0.000000e+00 806.0
42 TraesCS3B01G483200 chr5D 95.409 501 20 1 2286 2783 365212108 365211608 0.000000e+00 795.0
43 TraesCS3B01G483200 chr7D 100.000 67 0 0 908 974 349236413 349236479 1.230000e-24 124.0
44 TraesCS3B01G483200 chr6D 100.000 67 0 0 908 974 83953896 83953962 1.230000e-24 124.0
45 TraesCS3B01G483200 chr6D 100.000 67 0 0 908 974 283170503 283170569 1.230000e-24 124.0
46 TraesCS3B01G483200 chr4D 100.000 67 0 0 908 974 123369348 123369282 1.230000e-24 124.0
47 TraesCS3B01G483200 chr4D 100.000 67 0 0 908 974 123580298 123580232 1.230000e-24 124.0
48 TraesCS3B01G483200 chr4D 100.000 67 0 0 908 974 240979401 240979467 1.230000e-24 124.0
49 TraesCS3B01G483200 chr2D 100.000 67 0 0 908 974 17965481 17965547 1.230000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G483200 chr3B 729974751 729978004 3253 True 6010.00 6010 100.000000 1 3254 1 chr3B.!!$R2 3253
1 TraesCS3B01G483200 chr3B 189417709 189418683 974 False 1399.00 1399 92.698000 2284 3254 1 chr3B.!!$F1 970
2 TraesCS3B01G483200 chr3B 826326420 826327394 974 False 1386.00 1386 92.480000 2286 3254 1 chr3B.!!$F2 968
3 TraesCS3B01G483200 chr3B 730163395 730165816 2421 True 588.00 1373 90.606333 1 2286 3 chr3B.!!$R3 2285
4 TraesCS3B01G483200 chr1A 588981781 588982745 964 False 1421.00 1421 93.203000 2285 3254 1 chr1A.!!$F3 969
5 TraesCS3B01G483200 chr1A 432583615 432584119 504 False 737.00 737 93.267000 2286 2783 1 chr1A.!!$F2 497
6 TraesCS3B01G483200 chr5B 345515508 345516483 975 True 1382.00 1382 92.394000 2285 3254 1 chr5B.!!$R1 969
7 TraesCS3B01G483200 chr5B 430138316 430139287 971 True 1365.00 1365 92.175000 2286 3254 1 chr5B.!!$R2 968
8 TraesCS3B01G483200 chr5B 430243214 430244185 971 True 1354.00 1354 91.972000 2286 3254 1 chr5B.!!$R3 968
9 TraesCS3B01G483200 chr2A 755714098 755715058 960 False 1354.00 1354 91.895000 2270 3254 1 chr2A.!!$F1 984
10 TraesCS3B01G483200 chr1B 235506255 235507227 972 False 1351.00 1351 91.878000 2285 3254 1 chr1B.!!$F1 969
11 TraesCS3B01G483200 chr1B 608858283 608859003 720 False 1286.00 1286 98.890000 2282 3001 1 chr1B.!!$F2 719
12 TraesCS3B01G483200 chr3A 514490285 514491128 843 True 1288.00 1288 94.208000 2286 3130 1 chr3A.!!$R1 844
13 TraesCS3B01G483200 chr3A 687508176 687509266 1090 True 957.00 957 82.577000 974 2070 1 chr3A.!!$R4 1096
14 TraesCS3B01G483200 chr3A 687501048 687502313 1265 True 748.50 798 88.017000 974 2280 2 chr3A.!!$R5 1306
15 TraesCS3B01G483200 chr3A 687491756 687492454 698 True 682.00 682 84.278000 995 1699 1 chr3A.!!$R3 704
16 TraesCS3B01G483200 chr3D 550441508 550442795 1287 False 1243.00 1243 84.134000 974 2280 1 chr3D.!!$F1 1306
17 TraesCS3B01G483200 chr3D 550471506 550472790 1284 True 743.00 830 87.582000 974 2280 2 chr3D.!!$R5 1306
18 TraesCS3B01G483200 chr3D 550460162 550460691 529 True 558.00 558 85.741000 998 1528 1 chr3D.!!$R2 530
19 TraesCS3B01G483200 chr3D 550625380 550628744 3364 True 429.00 444 85.347500 974 2275 2 chr3D.!!$R8 1301
20 TraesCS3B01G483200 chr3D 550592011 550601281 9270 True 427.55 1136 91.208000 1 2286 6 chr3D.!!$R7 2285
21 TraesCS3B01G483200 chr5D 365211608 365212108 500 True 795.00 795 95.409000 2286 2783 1 chr5D.!!$R1 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 5499 0.033503 TCCATCGAGACCTAGCCACA 60.034 55.0 0.00 0.00 0.00 4.17 F
936 5535 0.033699 AGGTCCTACGAGGTACCCAC 60.034 60.0 8.74 2.17 36.70 4.61 F
1545 6183 0.034337 ACTGCGTTACCGGTGATTGT 59.966 50.0 19.93 5.66 33.68 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1977 6624 0.762082 CCTCTAGGGGCATCAGCTCA 60.762 60.000 0.00 0.0 45.55 4.26 R
2014 6661 1.270518 TGAGCTCTCTGCAAAGGACAC 60.271 52.381 16.19 0.0 45.94 3.67 R
3186 9820 3.455910 TGCTTCTATTAGGTGTGGCTGAT 59.544 43.478 0.00 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 9.173021 TCGGTAATGATTCAAATTTAGTGATGT 57.827 29.630 0.00 0.00 0.00 3.06
124 125 9.225201 CGGTAATGATTCAAATTTAGTGATGTG 57.775 33.333 0.00 0.00 0.00 3.21
141 142 8.365399 AGTGATGTGTAAATATCCATTGTACG 57.635 34.615 0.00 0.00 0.00 3.67
147 148 8.035984 TGTGTAAATATCCATTGTACGACTGAA 58.964 33.333 0.00 0.00 0.00 3.02
152 153 9.477484 AAATATCCATTGTACGACTGAATAGAC 57.523 33.333 0.00 0.00 0.00 2.59
153 154 5.258456 TCCATTGTACGACTGAATAGACC 57.742 43.478 0.00 0.00 0.00 3.85
154 155 4.707934 TCCATTGTACGACTGAATAGACCA 59.292 41.667 0.00 0.00 0.00 4.02
155 156 5.362717 TCCATTGTACGACTGAATAGACCAT 59.637 40.000 0.00 0.00 0.00 3.55
157 158 7.232737 TCCATTGTACGACTGAATAGACCATAT 59.767 37.037 0.00 0.00 0.00 1.78
158 159 7.872993 CCATTGTACGACTGAATAGACCATATT 59.127 37.037 0.00 0.00 0.00 1.28
160 161 7.818997 TGTACGACTGAATAGACCATATTCT 57.181 36.000 8.59 0.00 35.54 2.40
161 162 8.234136 TGTACGACTGAATAGACCATATTCTT 57.766 34.615 8.59 0.00 35.54 2.52
162 163 9.346005 TGTACGACTGAATAGACCATATTCTTA 57.654 33.333 8.59 0.00 35.54 2.10
163 164 9.828852 GTACGACTGAATAGACCATATTCTTAG 57.171 37.037 8.59 2.67 35.54 2.18
165 166 9.132923 ACGACTGAATAGACCATATTCTTAGAA 57.867 33.333 0.00 0.00 35.54 2.10
184 185 9.739276 TCTTAGAAGTATCCATTTGATGTTGTT 57.261 29.630 0.00 0.00 34.76 2.83
187 188 8.181904 AGAAGTATCCATTTGATGTTGTTTGT 57.818 30.769 0.00 0.00 34.76 2.83
188 189 9.295825 AGAAGTATCCATTTGATGTTGTTTGTA 57.704 29.630 0.00 0.00 34.76 2.41
192 193 6.723298 TCCATTTGATGTTGTTTGTAGGTT 57.277 33.333 0.00 0.00 0.00 3.50
194 195 8.415950 TCCATTTGATGTTGTTTGTAGGTTAT 57.584 30.769 0.00 0.00 0.00 1.89
196 197 8.522830 CCATTTGATGTTGTTTGTAGGTTATCT 58.477 33.333 0.00 0.00 0.00 1.98
199 200 8.918202 TTGATGTTGTTTGTAGGTTATCTTCT 57.082 30.769 0.00 0.00 0.00 2.85
200 201 8.918202 TGATGTTGTTTGTAGGTTATCTTCTT 57.082 30.769 0.00 0.00 0.00 2.52
203 204 8.740123 TGTTGTTTGTAGGTTATCTTCTTTGA 57.260 30.769 0.00 0.00 0.00 2.69
204 205 9.349713 TGTTGTTTGTAGGTTATCTTCTTTGAT 57.650 29.630 0.00 0.00 0.00 2.57
210 211 8.718102 TGTAGGTTATCTTCTTTGATTACAGC 57.282 34.615 0.00 0.00 30.34 4.40
211 212 6.910536 AGGTTATCTTCTTTGATTACAGCG 57.089 37.500 0.00 0.00 30.34 5.18
212 213 6.640518 AGGTTATCTTCTTTGATTACAGCGA 58.359 36.000 0.00 0.00 30.34 4.93
213 214 6.535508 AGGTTATCTTCTTTGATTACAGCGAC 59.464 38.462 0.00 0.00 30.34 5.19
214 215 6.238130 GGTTATCTTCTTTGATTACAGCGACC 60.238 42.308 0.00 0.00 30.34 4.79
215 216 4.537135 TCTTCTTTGATTACAGCGACCT 57.463 40.909 0.00 0.00 0.00 3.85
217 218 5.651530 TCTTCTTTGATTACAGCGACCTAG 58.348 41.667 0.00 0.00 0.00 3.02
218 219 5.417894 TCTTCTTTGATTACAGCGACCTAGA 59.582 40.000 0.00 0.00 0.00 2.43
220 221 6.954487 TCTTTGATTACAGCGACCTAGATA 57.046 37.500 0.00 0.00 0.00 1.98
221 222 7.526142 TCTTTGATTACAGCGACCTAGATAT 57.474 36.000 0.00 0.00 0.00 1.63
222 223 8.631480 TCTTTGATTACAGCGACCTAGATATA 57.369 34.615 0.00 0.00 0.00 0.86
223 224 9.244292 TCTTTGATTACAGCGACCTAGATATAT 57.756 33.333 0.00 0.00 0.00 0.86
224 225 9.295214 CTTTGATTACAGCGACCTAGATATATG 57.705 37.037 0.00 0.00 0.00 1.78
225 226 7.334844 TGATTACAGCGACCTAGATATATGG 57.665 40.000 0.00 0.00 0.00 2.74
227 228 6.510879 TTACAGCGACCTAGATATATGGTG 57.489 41.667 0.00 0.00 33.74 4.17
228 229 4.408276 ACAGCGACCTAGATATATGGTGT 58.592 43.478 0.00 0.00 33.74 4.16
234 235 5.297278 CGACCTAGATATATGGTGTAGGAGC 59.703 48.000 15.66 8.92 35.25 4.70
236 237 5.952947 ACCTAGATATATGGTGTAGGAGCAC 59.047 44.000 15.66 0.00 35.25 4.40
242 243 4.716003 GTGTAGGAGCACCAACCC 57.284 61.111 2.07 0.00 38.94 4.11
243 244 1.758592 GTGTAGGAGCACCAACCCA 59.241 57.895 2.07 0.00 38.94 4.51
245 246 1.072266 TGTAGGAGCACCAACCCAAT 58.928 50.000 2.07 0.00 38.94 3.16
246 247 1.004277 TGTAGGAGCACCAACCCAATC 59.996 52.381 2.07 0.00 38.94 2.67
247 248 0.623723 TAGGAGCACCAACCCAATCC 59.376 55.000 2.07 0.00 38.94 3.01
249 250 0.967380 GGAGCACCAACCCAATCCAG 60.967 60.000 0.00 0.00 35.97 3.86
252 253 1.250840 GCACCAACCCAATCCAGTCC 61.251 60.000 0.00 0.00 0.00 3.85
253 254 0.960364 CACCAACCCAATCCAGTCCG 60.960 60.000 0.00 0.00 0.00 4.79
255 256 2.046285 CAACCCAATCCAGTCCGCC 61.046 63.158 0.00 0.00 0.00 6.13
256 257 3.282374 AACCCAATCCAGTCCGCCC 62.282 63.158 0.00 0.00 0.00 6.13
257 258 3.411517 CCCAATCCAGTCCGCCCT 61.412 66.667 0.00 0.00 0.00 5.19
258 259 2.677228 CCAATCCAGTCCGCCCTT 59.323 61.111 0.00 0.00 0.00 3.95
261 262 0.107017 CAATCCAGTCCGCCCTTCAT 60.107 55.000 0.00 0.00 0.00 2.57
262 263 0.181350 AATCCAGTCCGCCCTTCATC 59.819 55.000 0.00 0.00 0.00 2.92
270 271 0.179089 CCGCCCTTCATCAGACTCTG 60.179 60.000 0.00 0.00 0.00 3.35
272 273 0.251354 GCCCTTCATCAGACTCTGCA 59.749 55.000 0.62 0.00 0.00 4.41
273 274 2.011046 GCCCTTCATCAGACTCTGCAC 61.011 57.143 0.62 0.00 0.00 4.57
276 277 2.418471 CCTTCATCAGACTCTGCACTCC 60.418 54.545 0.62 0.00 0.00 3.85
277 278 1.928868 TCATCAGACTCTGCACTCCA 58.071 50.000 0.62 0.00 0.00 3.86
278 279 1.547820 TCATCAGACTCTGCACTCCAC 59.452 52.381 0.62 0.00 0.00 4.02
279 280 0.901124 ATCAGACTCTGCACTCCACC 59.099 55.000 0.62 0.00 0.00 4.61
282 283 0.902516 AGACTCTGCACTCCACCTCC 60.903 60.000 0.00 0.00 0.00 4.30
284 285 2.203640 TCTGCACTCCACCTCCGT 60.204 61.111 0.00 0.00 0.00 4.69
286 287 2.523168 TGCACTCCACCTCCGTCA 60.523 61.111 0.00 0.00 0.00 4.35
289 290 1.448540 CACTCCACCTCCGTCATGC 60.449 63.158 0.00 0.00 0.00 4.06
294 295 2.284625 ACCTCCGTCATGCCCTCA 60.285 61.111 0.00 0.00 0.00 3.86
295 296 2.187946 CCTCCGTCATGCCCTCAC 59.812 66.667 0.00 0.00 0.00 3.51
296 297 2.659063 CCTCCGTCATGCCCTCACA 61.659 63.158 0.00 0.00 0.00 3.58
297 298 1.448540 CTCCGTCATGCCCTCACAC 60.449 63.158 0.00 0.00 0.00 3.82
298 299 2.171209 CTCCGTCATGCCCTCACACA 62.171 60.000 0.00 0.00 0.00 3.72
299 300 1.742880 CCGTCATGCCCTCACACAG 60.743 63.158 0.00 0.00 0.00 3.66
300 301 1.742880 CGTCATGCCCTCACACAGG 60.743 63.158 0.00 0.00 43.01 4.00
301 302 1.376466 GTCATGCCCTCACACAGGT 59.624 57.895 0.00 0.00 41.51 4.00
303 304 1.676635 CATGCCCTCACACAGGTGG 60.677 63.158 4.24 0.00 45.32 4.61
304 305 3.574074 ATGCCCTCACACAGGTGGC 62.574 63.158 4.24 0.00 45.32 5.01
308 309 3.046087 CTCACACAGGTGGCGCTG 61.046 66.667 7.64 0.00 45.32 5.18
309 310 4.624364 TCACACAGGTGGCGCTGG 62.624 66.667 7.64 0.00 45.32 4.85
311 312 4.189580 ACACAGGTGGCGCTGGTT 62.190 61.111 7.64 0.00 34.19 3.67
313 314 3.560251 ACAGGTGGCGCTGGTTCT 61.560 61.111 7.64 0.00 0.00 3.01
314 315 2.214216 ACAGGTGGCGCTGGTTCTA 61.214 57.895 7.64 0.00 0.00 2.10
315 316 1.003839 CAGGTGGCGCTGGTTCTAA 60.004 57.895 7.64 0.00 0.00 2.10
316 317 1.003718 AGGTGGCGCTGGTTCTAAC 60.004 57.895 7.64 0.00 0.00 2.34
326 327 1.378646 GGTTCTAACCCAGCCAGGC 60.379 63.158 1.84 1.84 43.43 4.85
332 333 2.012824 TAACCCAGCCAGGCAACCAA 62.013 55.000 15.80 0.00 35.39 3.67
345 453 2.225467 GCAACCAAGATAGATGGCCTC 58.775 52.381 3.32 0.00 41.89 4.70
346 454 2.158696 GCAACCAAGATAGATGGCCTCT 60.159 50.000 3.32 7.14 41.89 3.69
347 455 3.737850 CAACCAAGATAGATGGCCTCTC 58.262 50.000 3.32 0.20 41.89 3.20
350 458 2.618794 CAAGATAGATGGCCTCTCCCT 58.381 52.381 3.32 2.81 35.28 4.20
352 460 2.081043 AGATAGATGGCCTCTCCCTCT 58.919 52.381 3.32 3.43 41.79 3.69
354 462 1.540115 TAGATGGCCTCTCCCTCTCT 58.460 55.000 3.32 0.00 39.95 3.10
355 463 1.540115 AGATGGCCTCTCCCTCTCTA 58.460 55.000 3.32 0.00 35.22 2.43
358 466 3.665121 AGATGGCCTCTCCCTCTCTAATA 59.335 47.826 3.32 0.00 35.22 0.98
360 468 5.498005 AGATGGCCTCTCCCTCTCTAATATA 59.502 44.000 3.32 0.00 35.22 0.86
361 469 5.822774 TGGCCTCTCCCTCTCTAATATAT 57.177 43.478 3.32 0.00 0.00 0.86
362 470 5.523588 TGGCCTCTCCCTCTCTAATATATG 58.476 45.833 3.32 0.00 0.00 1.78
363 471 5.016782 TGGCCTCTCCCTCTCTAATATATGT 59.983 44.000 3.32 0.00 0.00 2.29
365 473 7.091307 TGGCCTCTCCCTCTCTAATATATGTAT 60.091 40.741 3.32 0.00 0.00 2.29
366 474 7.232534 GGCCTCTCCCTCTCTAATATATGTATG 59.767 44.444 0.00 0.00 0.00 2.39
367 475 7.255801 GCCTCTCCCTCTCTAATATATGTATGC 60.256 44.444 0.00 0.00 0.00 3.14
372 480 9.326489 TCCCTCTCTAATATATGTATGCTTGTT 57.674 33.333 0.00 0.00 0.00 2.83
373 481 9.376075 CCCTCTCTAATATATGTATGCTTGTTG 57.624 37.037 0.00 0.00 0.00 3.33
380 488 7.734924 ATATATGTATGCTTGTTGTGTCCTG 57.265 36.000 0.00 0.00 0.00 3.86
385 493 5.590663 TGTATGCTTGTTGTGTCCTGTTTTA 59.409 36.000 0.00 0.00 0.00 1.52
386 494 5.590530 ATGCTTGTTGTGTCCTGTTTTAA 57.409 34.783 0.00 0.00 0.00 1.52
388 496 4.142271 TGCTTGTTGTGTCCTGTTTTAAGG 60.142 41.667 0.00 0.00 38.84 2.69
391 499 5.986501 TGTTGTGTCCTGTTTTAAGGTTT 57.013 34.783 0.00 0.00 38.58 3.27
392 500 5.715070 TGTTGTGTCCTGTTTTAAGGTTTG 58.285 37.500 0.00 0.00 38.58 2.93
393 501 5.244178 TGTTGTGTCCTGTTTTAAGGTTTGT 59.756 36.000 0.00 0.00 38.58 2.83
395 503 6.439675 TGTGTCCTGTTTTAAGGTTTGTAC 57.560 37.500 0.00 0.00 38.58 2.90
410 518 6.870971 GGTTTGTACCTTAACTGTTCATCA 57.129 37.500 0.00 0.00 41.53 3.07
411 519 7.448748 GGTTTGTACCTTAACTGTTCATCAT 57.551 36.000 0.00 0.00 41.53 2.45
412 520 7.527457 GGTTTGTACCTTAACTGTTCATCATC 58.473 38.462 0.00 0.00 41.53 2.92
413 521 7.174253 GGTTTGTACCTTAACTGTTCATCATCA 59.826 37.037 0.00 0.00 41.53 3.07
414 522 8.564574 GTTTGTACCTTAACTGTTCATCATCAA 58.435 33.333 0.00 0.00 0.00 2.57
415 523 8.684386 TTGTACCTTAACTGTTCATCATCAAA 57.316 30.769 0.00 0.00 0.00 2.69
417 525 8.946085 TGTACCTTAACTGTTCATCATCAAATC 58.054 33.333 0.00 0.00 0.00 2.17
418 526 8.946085 GTACCTTAACTGTTCATCATCAAATCA 58.054 33.333 0.00 0.00 0.00 2.57
419 527 8.408043 ACCTTAACTGTTCATCATCAAATCAA 57.592 30.769 0.00 0.00 0.00 2.57
420 528 8.859090 ACCTTAACTGTTCATCATCAAATCAAA 58.141 29.630 0.00 0.00 0.00 2.69
429 537 9.595823 GTTCATCATCAAATCAAATCAAATCCT 57.404 29.630 0.00 0.00 0.00 3.24
430 538 9.811995 TTCATCATCAAATCAAATCAAATCCTC 57.188 29.630 0.00 0.00 0.00 3.71
434 542 9.128404 TCATCAAATCAAATCAAATCCTCTAGG 57.872 33.333 0.00 0.00 0.00 3.02
435 543 8.910944 CATCAAATCAAATCAAATCCTCTAGGT 58.089 33.333 0.00 0.00 36.34 3.08
436 544 8.511604 TCAAATCAAATCAAATCCTCTAGGTC 57.488 34.615 0.00 0.00 36.34 3.85
438 546 6.838401 ATCAAATCAAATCCTCTAGGTCCT 57.162 37.500 0.00 0.00 36.34 3.85
442 550 3.115390 TCAAATCCTCTAGGTCCTTGGG 58.885 50.000 0.00 0.00 36.34 4.12
443 551 1.512735 AATCCTCTAGGTCCTTGGGC 58.487 55.000 0.00 0.00 36.34 5.36
444 552 0.343372 ATCCTCTAGGTCCTTGGGCA 59.657 55.000 0.00 0.00 36.34 5.36
447 555 0.539051 CTCTAGGTCCTTGGGCACTG 59.461 60.000 0.00 0.00 0.00 3.66
448 556 1.078143 CTAGGTCCTTGGGCACTGC 60.078 63.158 0.00 0.00 0.00 4.40
452 560 3.241530 TCCTTGGGCACTGCTCGT 61.242 61.111 0.00 0.00 0.00 4.18
453 561 1.911269 TCCTTGGGCACTGCTCGTA 60.911 57.895 0.00 0.00 0.00 3.43
454 562 1.741770 CCTTGGGCACTGCTCGTAC 60.742 63.158 0.00 0.00 0.00 3.67
459 567 2.372690 GGCACTGCTCGTACGTGTG 61.373 63.158 16.05 18.63 0.00 3.82
461 569 0.386352 GCACTGCTCGTACGTGTGTA 60.386 55.000 16.05 5.82 0.00 2.90
466 574 1.270274 TGCTCGTACGTGTGTAATGGT 59.730 47.619 16.05 0.00 30.94 3.55
468 576 2.669113 GCTCGTACGTGTGTAATGGTGA 60.669 50.000 16.05 0.00 30.94 4.02
469 577 2.912967 CTCGTACGTGTGTAATGGTGAC 59.087 50.000 16.05 0.00 30.94 3.67
471 579 2.352030 CGTACGTGTGTAATGGTGACCT 60.352 50.000 7.22 0.00 30.94 3.85
472 580 2.450609 ACGTGTGTAATGGTGACCTC 57.549 50.000 2.11 0.00 0.00 3.85
483 591 2.321213 GTGACCTCACCACAAGTGC 58.679 57.895 0.00 0.00 46.81 4.40
484 592 0.463654 GTGACCTCACCACAAGTGCA 60.464 55.000 0.00 0.00 46.81 4.57
486 594 1.696884 TGACCTCACCACAAGTGCATA 59.303 47.619 0.00 0.00 46.81 3.14
488 596 2.939103 GACCTCACCACAAGTGCATATC 59.061 50.000 0.00 0.00 46.81 1.63
489 597 2.573462 ACCTCACCACAAGTGCATATCT 59.427 45.455 0.00 0.00 46.81 1.98
490 598 2.941064 CCTCACCACAAGTGCATATCTG 59.059 50.000 0.00 0.00 46.81 2.90
493 601 2.349580 CACCACAAGTGCATATCTGACG 59.650 50.000 0.00 0.00 40.28 4.35
494 602 2.028112 ACCACAAGTGCATATCTGACGT 60.028 45.455 0.00 0.00 0.00 4.34
495 603 3.194755 ACCACAAGTGCATATCTGACGTA 59.805 43.478 0.00 0.00 0.00 3.57
497 605 4.209911 CCACAAGTGCATATCTGACGTATG 59.790 45.833 0.00 0.00 33.65 2.39
499 607 4.141937 ACAAGTGCATATCTGACGTATGGT 60.142 41.667 0.00 0.00 31.68 3.55
500 608 4.244425 AGTGCATATCTGACGTATGGTC 57.756 45.455 0.00 0.00 46.27 4.02
505 1596 0.385751 ATCTGACGTATGGTCTGCCG 59.614 55.000 0.00 0.00 46.24 5.69
511 1602 2.165301 GTATGGTCTGCCGTGCGTC 61.165 63.158 0.00 0.00 37.67 5.19
516 1607 1.574428 GTCTGCCGTGCGTCAATTT 59.426 52.632 0.00 0.00 0.00 1.82
520 1611 2.486203 TCTGCCGTGCGTCAATTTTATT 59.514 40.909 0.00 0.00 0.00 1.40
524 1615 4.149046 TGCCGTGCGTCAATTTTATTTTTC 59.851 37.500 0.00 0.00 0.00 2.29
526 1617 5.107645 GCCGTGCGTCAATTTTATTTTTCTT 60.108 36.000 0.00 0.00 0.00 2.52
528 1619 6.074569 CCGTGCGTCAATTTTATTTTTCTTGT 60.075 34.615 0.00 0.00 0.00 3.16
529 1620 6.780496 CGTGCGTCAATTTTATTTTTCTTGTG 59.220 34.615 0.00 0.00 0.00 3.33
550 1641 5.669164 TGGAAAAACCAAAAAGCTAGTGT 57.331 34.783 0.00 0.00 46.75 3.55
552 1643 5.420739 TGGAAAAACCAAAAAGCTAGTGTCT 59.579 36.000 0.00 0.00 46.75 3.41
553 1644 5.977725 GGAAAAACCAAAAAGCTAGTGTCTC 59.022 40.000 0.00 0.00 38.79 3.36
554 1645 5.515797 AAAACCAAAAAGCTAGTGTCTCC 57.484 39.130 0.00 0.00 0.00 3.71
555 1646 3.857157 ACCAAAAAGCTAGTGTCTCCA 57.143 42.857 0.00 0.00 0.00 3.86
556 1647 3.477530 ACCAAAAAGCTAGTGTCTCCAC 58.522 45.455 0.00 0.00 42.17 4.02
566 1657 2.500509 GTGTCTCCACTCCATCGATC 57.499 55.000 0.00 0.00 38.61 3.69
567 1658 1.025041 TGTCTCCACTCCATCGATCG 58.975 55.000 9.36 9.36 0.00 3.69
569 1660 1.006805 CTCCACTCCATCGATCGCC 60.007 63.158 11.09 0.00 0.00 5.54
570 1661 2.029666 CCACTCCATCGATCGCCC 59.970 66.667 11.09 0.00 0.00 6.13
571 1662 2.796193 CCACTCCATCGATCGCCCA 61.796 63.158 11.09 0.00 0.00 5.36
572 1663 1.300465 CACTCCATCGATCGCCCAG 60.300 63.158 11.09 5.97 0.00 4.45
573 1664 1.455773 ACTCCATCGATCGCCCAGA 60.456 57.895 11.09 3.60 0.00 3.86
575 1666 1.738346 CTCCATCGATCGCCCAGACA 61.738 60.000 11.09 0.00 0.00 3.41
578 1669 0.179100 CATCGATCGCCCAGACAACT 60.179 55.000 11.09 0.00 0.00 3.16
579 1670 0.103208 ATCGATCGCCCAGACAACTC 59.897 55.000 11.09 0.00 0.00 3.01
584 1675 1.153549 CGCCCAGACAACTCTAGGC 60.154 63.158 0.00 0.00 45.33 3.93
586 1677 1.486211 GCCCAGACAACTCTAGGCTA 58.514 55.000 0.44 0.00 45.34 3.93
587 1678 1.410882 GCCCAGACAACTCTAGGCTAG 59.589 57.143 15.56 15.56 45.34 3.42
588 1679 2.950874 GCCCAGACAACTCTAGGCTAGA 60.951 54.545 22.30 22.30 45.34 2.43
592 1683 3.129638 CAGACAACTCTAGGCTAGACACC 59.870 52.174 20.11 8.04 0.00 4.16
593 1684 2.427812 GACAACTCTAGGCTAGACACCC 59.572 54.545 20.11 5.48 0.00 4.61
594 1685 1.405821 CAACTCTAGGCTAGACACCCG 59.594 57.143 20.11 12.45 0.00 5.28
597 1688 0.323999 TCTAGGCTAGACACCCGCAA 60.324 55.000 20.11 0.00 0.00 4.85
598 1689 0.535335 CTAGGCTAGACACCCGCAAA 59.465 55.000 16.70 0.00 0.00 3.68
627 1718 7.592439 AAAAATCTAGGCTAGTTAACGTGAC 57.408 36.000 20.45 0.00 0.00 3.67
629 1720 3.689347 TCTAGGCTAGTTAACGTGACCA 58.311 45.455 20.45 0.00 0.00 4.02
630 1721 2.738013 AGGCTAGTTAACGTGACCAC 57.262 50.000 0.00 0.00 0.00 4.16
640 1731 2.126189 GTGACCACGGTACTCGGC 60.126 66.667 8.31 0.00 44.45 5.54
642 1733 1.002257 TGACCACGGTACTCGGCTA 60.002 57.895 8.31 0.00 44.45 3.93
643 1734 1.308069 TGACCACGGTACTCGGCTAC 61.308 60.000 8.31 0.00 44.45 3.58
644 1735 2.315038 GACCACGGTACTCGGCTACG 62.315 65.000 8.31 0.00 44.45 3.51
645 1736 2.401766 CCACGGTACTCGGCTACGT 61.402 63.158 0.00 0.00 44.45 3.57
646 1737 1.226211 CACGGTACTCGGCTACGTG 60.226 63.158 0.00 0.00 46.82 4.49
647 1738 1.375908 ACGGTACTCGGCTACGTGA 60.376 57.895 0.00 0.00 44.45 4.35
649 1740 1.086067 CGGTACTCGGCTACGTGAGA 61.086 60.000 7.55 0.00 41.85 3.27
661 2149 3.000724 GCTACGTGAGATGAGATGTTTGC 59.999 47.826 0.00 0.00 0.00 3.68
688 2176 2.416836 GCCGCACGATATAGCTTGGATA 60.417 50.000 0.00 0.00 0.00 2.59
689 2177 3.845178 CCGCACGATATAGCTTGGATAA 58.155 45.455 0.00 0.00 0.00 1.75
693 2181 5.512082 CGCACGATATAGCTTGGATAACTAC 59.488 44.000 0.00 0.00 0.00 2.73
694 2182 5.512082 GCACGATATAGCTTGGATAACTACG 59.488 44.000 0.00 0.00 0.00 3.51
695 2183 6.622245 GCACGATATAGCTTGGATAACTACGA 60.622 42.308 0.00 0.00 0.00 3.43
711 4743 5.395682 ACTACGAACACAAGGCAAGTATA 57.604 39.130 0.00 0.00 0.00 1.47
712 4744 5.408356 ACTACGAACACAAGGCAAGTATAG 58.592 41.667 0.00 0.00 0.00 1.31
713 4745 4.530710 ACGAACACAAGGCAAGTATAGA 57.469 40.909 0.00 0.00 0.00 1.98
755 5069 3.124560 GGAGAAAGGCAAGTATAGACGC 58.875 50.000 0.00 0.00 0.00 5.19
756 5070 2.789893 GAGAAAGGCAAGTATAGACGCG 59.210 50.000 3.53 3.53 0.00 6.01
757 5071 1.258197 GAAAGGCAAGTATAGACGCGC 59.742 52.381 5.73 0.00 0.00 6.86
778 5092 5.323900 CGCACCATATTTGTTGTTCTACTG 58.676 41.667 0.00 0.00 0.00 2.74
779 5093 5.095490 GCACCATATTTGTTGTTCTACTGC 58.905 41.667 0.00 0.00 0.00 4.40
780 5094 5.106157 GCACCATATTTGTTGTTCTACTGCT 60.106 40.000 0.00 0.00 0.00 4.24
782 5096 6.803320 CACCATATTTGTTGTTCTACTGCTTG 59.197 38.462 0.00 0.00 0.00 4.01
785 5105 8.246180 CCATATTTGTTGTTCTACTGCTTGATT 58.754 33.333 0.00 0.00 0.00 2.57
818 5138 1.408453 ATTGGGCTCTACTACCGGCC 61.408 60.000 0.00 0.00 43.42 6.13
822 5142 1.143401 GCTCTACTACCGGCCCAAC 59.857 63.158 0.00 0.00 0.00 3.77
853 5431 1.889454 CCTCTGCGAGTCTGCTTCT 59.111 57.895 8.13 0.00 35.36 2.85
855 5433 1.337635 CCTCTGCGAGTCTGCTTCTTT 60.338 52.381 8.13 0.00 35.36 2.52
861 5439 4.433615 TGCGAGTCTGCTTCTTTTATAGG 58.566 43.478 8.13 0.00 35.36 2.57
868 5446 3.740115 TGCTTCTTTTATAGGGATCGCC 58.260 45.455 6.09 0.00 0.00 5.54
870 5448 3.748568 GCTTCTTTTATAGGGATCGCCTG 59.251 47.826 6.09 0.00 0.00 4.85
871 5449 4.503296 GCTTCTTTTATAGGGATCGCCTGA 60.503 45.833 6.09 0.00 0.00 3.86
878 5477 2.892425 GGATCGCCTGAAGCCACG 60.892 66.667 0.00 0.00 38.78 4.94
900 5499 0.033503 TCCATCGAGACCTAGCCACA 60.034 55.000 0.00 0.00 0.00 4.17
901 5500 0.824109 CCATCGAGACCTAGCCACAA 59.176 55.000 0.00 0.00 0.00 3.33
902 5501 1.471676 CCATCGAGACCTAGCCACAAC 60.472 57.143 0.00 0.00 0.00 3.32
908 5507 1.549170 AGACCTAGCCACAACGGTAAG 59.451 52.381 0.00 0.00 36.97 2.34
913 5512 2.744709 CCACAACGGTAAGGCGGG 60.745 66.667 0.00 0.00 0.00 6.13
914 5513 2.031465 CACAACGGTAAGGCGGGT 59.969 61.111 0.00 0.00 0.00 5.28
915 5514 2.030958 CACAACGGTAAGGCGGGTC 61.031 63.158 0.00 0.00 0.00 4.46
917 5516 2.990967 AACGGTAAGGCGGGTCGA 60.991 61.111 0.00 0.00 0.00 4.20
918 5517 2.998279 AACGGTAAGGCGGGTCGAG 61.998 63.158 0.00 0.00 0.00 4.04
920 5519 3.073101 GGTAAGGCGGGTCGAGGT 61.073 66.667 0.00 0.00 0.00 3.85
923 5522 3.292481 TAAGGCGGGTCGAGGTCCT 62.292 63.158 0.00 0.00 0.00 3.85
925 5524 3.525545 GGCGGGTCGAGGTCCTAC 61.526 72.222 0.00 0.00 0.00 3.18
926 5525 3.885521 GCGGGTCGAGGTCCTACG 61.886 72.222 0.00 0.00 0.00 3.51
927 5526 2.124983 CGGGTCGAGGTCCTACGA 60.125 66.667 8.73 8.73 36.18 3.43
928 5527 2.178890 CGGGTCGAGGTCCTACGAG 61.179 68.421 12.04 0.83 39.16 4.18
930 5529 1.077858 GGTCGAGGTCCTACGAGGT 60.078 63.158 12.04 0.00 39.16 3.85
931 5530 0.179000 GGTCGAGGTCCTACGAGGTA 59.821 60.000 12.04 0.00 39.16 3.08
933 5532 0.179000 TCGAGGTCCTACGAGGTACC 59.821 60.000 2.73 2.73 36.53 3.34
935 5534 0.257039 GAGGTCCTACGAGGTACCCA 59.743 60.000 8.74 0.00 36.70 4.51
936 5535 0.033699 AGGTCCTACGAGGTACCCAC 60.034 60.000 8.74 2.17 36.70 4.61
937 5536 0.033699 GGTCCTACGAGGTACCCACT 60.034 60.000 8.74 0.00 36.53 4.00
938 5537 1.212935 GGTCCTACGAGGTACCCACTA 59.787 57.143 8.74 0.00 36.53 2.74
940 5539 2.092699 GTCCTACGAGGTACCCACTACT 60.093 54.545 8.74 0.00 36.53 2.57
941 5540 2.171448 TCCTACGAGGTACCCACTACTC 59.829 54.545 8.74 0.00 36.53 2.59
942 5541 2.208431 CTACGAGGTACCCACTACTCG 58.792 57.143 15.22 15.22 39.77 4.18
946 5545 0.998145 AGGTACCCACTACTCGGAGT 59.002 55.000 15.95 15.95 0.00 3.85
947 5546 2.171448 GAGGTACCCACTACTCGGAGTA 59.829 54.545 16.50 16.50 0.00 2.59
948 5547 2.092699 AGGTACCCACTACTCGGAGTAC 60.093 54.545 13.70 5.21 33.19 2.73
949 5548 2.293170 GTACCCACTACTCGGAGTACC 58.707 57.143 13.70 0.00 30.29 3.34
950 5549 0.033699 ACCCACTACTCGGAGTACCC 60.034 60.000 13.70 0.00 0.00 3.69
951 5550 0.258194 CCCACTACTCGGAGTACCCT 59.742 60.000 13.70 0.00 0.00 4.34
952 5551 1.677942 CCACTACTCGGAGTACCCTC 58.322 60.000 13.70 0.00 36.96 4.30
962 5561 2.963599 GAGTACCCTCCCACCAAAAA 57.036 50.000 0.00 0.00 0.00 1.94
1186 5785 0.524816 CTACGTACCGCAAGCGACAT 60.525 55.000 16.97 3.63 42.83 3.06
1191 5791 1.655885 TACCGCAAGCGACATCCGTA 61.656 55.000 16.97 5.52 42.83 4.02
1204 5804 5.346822 GCGACATCCGTAATAATACCGAAAT 59.653 40.000 0.00 0.00 41.15 2.17
1261 5861 2.148768 TCTTCAGACTTCGTACGCAGA 58.851 47.619 21.66 1.83 0.00 4.26
1302 5902 3.396276 TCACCTTCACCAAGTTTATCCCA 59.604 43.478 0.00 0.00 0.00 4.37
1305 5905 5.245977 CACCTTCACCAAGTTTATCCCAAAT 59.754 40.000 0.00 0.00 0.00 2.32
1308 5908 7.678171 ACCTTCACCAAGTTTATCCCAAATAAT 59.322 33.333 0.00 0.00 0.00 1.28
1336 5936 0.389948 CTTCAACTACGCGAGGCCTT 60.390 55.000 15.93 0.00 0.00 4.35
1338 5938 0.889994 TCAACTACGCGAGGCCTTTA 59.110 50.000 15.93 0.00 0.00 1.85
1341 5941 1.141019 CTACGCGAGGCCTTTAGCA 59.859 57.895 15.93 8.49 46.50 3.49
1411 6014 4.758251 TCCATCTGGCCGTGTGCG 62.758 66.667 0.00 0.00 42.61 5.34
1419 6022 2.185867 GCCGTGTGCGATCCCTTA 59.814 61.111 0.00 0.00 41.33 2.69
1500 6111 2.419021 CGTTGGGTATTACATGACCGGT 60.419 50.000 6.92 6.92 36.51 5.28
1543 6181 0.672401 CCACTGCGTTACCGGTGATT 60.672 55.000 19.93 0.00 43.24 2.57
1545 6183 0.034337 ACTGCGTTACCGGTGATTGT 59.966 50.000 19.93 5.66 33.68 2.71
1548 6186 1.338294 TGCGTTACCGGTGATTGTGAT 60.338 47.619 19.93 0.00 33.68 3.06
1575 6213 2.617274 GCAGCCGGTGTTCCAAGTC 61.617 63.158 1.90 0.00 0.00 3.01
1590 6228 2.548920 CCAAGTCCTCTTCACCACTCAC 60.549 54.545 0.00 0.00 0.00 3.51
1598 6236 3.165071 TCTTCACCACTCACTGCTATCA 58.835 45.455 0.00 0.00 0.00 2.15
1599 6237 3.771479 TCTTCACCACTCACTGCTATCAT 59.229 43.478 0.00 0.00 0.00 2.45
1600 6238 3.531934 TCACCACTCACTGCTATCATG 57.468 47.619 0.00 0.00 0.00 3.07
1601 6239 3.099141 TCACCACTCACTGCTATCATGA 58.901 45.455 0.00 0.00 0.00 3.07
1602 6240 3.118992 TCACCACTCACTGCTATCATGAC 60.119 47.826 0.00 0.00 0.00 3.06
1603 6241 2.833943 ACCACTCACTGCTATCATGACA 59.166 45.455 0.00 0.00 0.00 3.58
1623 6261 6.061441 TGACAATGACAAACTGGAGTATGTT 58.939 36.000 0.00 0.00 0.00 2.71
1635 6276 7.540474 ACTGGAGTATGTTTTCTCTTACTCA 57.460 36.000 15.97 6.78 42.08 3.41
1657 6298 0.249120 CGCCATGGACAGTTGGAGTA 59.751 55.000 18.40 0.00 34.81 2.59
1728 6369 1.227615 CGGTGTGGTAAACGGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
1827 6468 7.036863 TCCTTAACCAAGATCCCTATTCAAGTT 60.037 37.037 0.00 0.00 33.20 2.66
1841 6482 1.003331 TCAAGTTAAACGTGGCTTGCG 60.003 47.619 13.36 0.00 38.44 4.85
1845 6486 1.508808 TTAAACGTGGCTTGCGACCC 61.509 55.000 0.00 0.00 0.00 4.46
1953 6600 7.369803 ACAAGACAATGATCATAGTTGTGAC 57.630 36.000 15.99 7.97 36.30 3.67
1954 6601 6.936335 ACAAGACAATGATCATAGTTGTGACA 59.064 34.615 15.99 0.00 36.30 3.58
1969 6616 2.027192 TGTGACAGTAAGGAAGGATGGC 60.027 50.000 0.00 0.00 0.00 4.40
1977 6624 0.913451 AGGAAGGATGGCTGCACTCT 60.913 55.000 0.50 0.00 0.00 3.24
2052 6699 6.042437 AGAGCTCATGTGTGATATTCATGGTA 59.958 38.462 17.77 0.00 39.25 3.25
2088 6735 7.093640 TGTCGTACCATATTCAGTCTTAACCTT 60.094 37.037 0.00 0.00 0.00 3.50
3228 9862 6.080648 AGCAACATAAATGGCTATGATGTG 57.919 37.500 10.45 2.50 35.55 3.21
3246 9880 2.297880 TGTGAGCTGCTACCTTTTCGTA 59.702 45.455 0.15 0.00 0.00 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 6.548251 TGGTCTATTCAGTCGTACAATGGATA 59.452 38.462 0.00 0.00 0.00 2.59
130 131 5.362717 TGGTCTATTCAGTCGTACAATGGAT 59.637 40.000 0.00 0.00 0.00 3.41
131 132 4.707934 TGGTCTATTCAGTCGTACAATGGA 59.292 41.667 0.00 0.00 0.00 3.41
132 133 5.006153 TGGTCTATTCAGTCGTACAATGG 57.994 43.478 0.00 0.00 0.00 3.16
135 136 8.234136 AGAATATGGTCTATTCAGTCGTACAA 57.766 34.615 7.50 0.00 36.63 2.41
137 138 9.828852 CTAAGAATATGGTCTATTCAGTCGTAC 57.171 37.037 7.50 0.00 36.63 3.67
139 140 8.693120 TCTAAGAATATGGTCTATTCAGTCGT 57.307 34.615 7.50 0.00 36.63 4.34
157 158 9.739276 ACAACATCAAATGGATACTTCTAAGAA 57.261 29.630 0.00 0.00 33.95 2.52
158 159 9.739276 AACAACATCAAATGGATACTTCTAAGA 57.261 29.630 0.00 0.00 33.95 2.10
161 162 9.295825 ACAAACAACATCAAATGGATACTTCTA 57.704 29.630 0.00 0.00 33.95 2.10
162 163 8.181904 ACAAACAACATCAAATGGATACTTCT 57.818 30.769 0.00 0.00 33.95 2.85
163 164 9.559958 CTACAAACAACATCAAATGGATACTTC 57.440 33.333 0.00 0.00 33.95 3.01
165 166 7.669722 ACCTACAAACAACATCAAATGGATACT 59.330 33.333 0.00 0.00 33.95 2.12
167 168 8.415950 AACCTACAAACAACATCAAATGGATA 57.584 30.769 0.00 0.00 33.95 2.59
169 170 6.723298 AACCTACAAACAACATCAAATGGA 57.277 33.333 0.00 0.00 33.60 3.41
171 172 9.912634 AAGATAACCTACAAACAACATCAAATG 57.087 29.630 0.00 0.00 0.00 2.32
174 175 8.918202 AGAAGATAACCTACAAACAACATCAA 57.082 30.769 0.00 0.00 0.00 2.57
175 176 8.918202 AAGAAGATAACCTACAAACAACATCA 57.082 30.769 0.00 0.00 0.00 3.07
176 177 9.612620 CAAAGAAGATAACCTACAAACAACATC 57.387 33.333 0.00 0.00 0.00 3.06
177 178 9.349713 TCAAAGAAGATAACCTACAAACAACAT 57.650 29.630 0.00 0.00 0.00 2.71
178 179 8.740123 TCAAAGAAGATAACCTACAAACAACA 57.260 30.769 0.00 0.00 0.00 3.33
184 185 9.162764 GCTGTAATCAAAGAAGATAACCTACAA 57.837 33.333 0.00 0.00 0.00 2.41
187 188 7.705325 GTCGCTGTAATCAAAGAAGATAACCTA 59.295 37.037 0.00 0.00 0.00 3.08
188 189 6.535508 GTCGCTGTAATCAAAGAAGATAACCT 59.464 38.462 0.00 0.00 0.00 3.50
192 193 6.222038 AGGTCGCTGTAATCAAAGAAGATA 57.778 37.500 0.00 0.00 0.00 1.98
194 195 4.537135 AGGTCGCTGTAATCAAAGAAGA 57.463 40.909 0.00 0.00 0.00 2.87
196 197 5.654603 TCTAGGTCGCTGTAATCAAAGAA 57.345 39.130 0.00 0.00 0.00 2.52
198 199 9.295214 CATATATCTAGGTCGCTGTAATCAAAG 57.705 37.037 0.00 0.00 0.00 2.77
199 200 8.251026 CCATATATCTAGGTCGCTGTAATCAAA 58.749 37.037 0.00 0.00 0.00 2.69
200 201 7.396339 ACCATATATCTAGGTCGCTGTAATCAA 59.604 37.037 0.00 0.00 0.00 2.57
203 204 6.663953 ACACCATATATCTAGGTCGCTGTAAT 59.336 38.462 0.00 0.00 32.15 1.89
204 205 6.008331 ACACCATATATCTAGGTCGCTGTAA 58.992 40.000 0.00 0.00 32.15 2.41
206 207 4.408276 ACACCATATATCTAGGTCGCTGT 58.592 43.478 0.00 0.00 32.15 4.40
209 210 5.191426 TCCTACACCATATATCTAGGTCGC 58.809 45.833 0.00 0.00 32.15 5.19
210 211 5.297278 GCTCCTACACCATATATCTAGGTCG 59.703 48.000 0.00 0.00 32.15 4.79
211 212 6.095720 GTGCTCCTACACCATATATCTAGGTC 59.904 46.154 0.00 0.00 34.35 3.85
212 213 5.952947 GTGCTCCTACACCATATATCTAGGT 59.047 44.000 0.00 0.00 34.35 3.08
213 214 6.458232 GTGCTCCTACACCATATATCTAGG 57.542 45.833 0.00 0.00 34.35 3.02
225 226 0.109723 TTGGGTTGGTGCTCCTACAC 59.890 55.000 18.72 16.36 41.87 2.90
227 228 1.682087 GGATTGGGTTGGTGCTCCTAC 60.682 57.143 10.43 10.43 38.42 3.18
228 229 0.623723 GGATTGGGTTGGTGCTCCTA 59.376 55.000 6.34 0.00 34.23 2.94
234 235 0.960364 CGGACTGGATTGGGTTGGTG 60.960 60.000 0.00 0.00 0.00 4.17
236 237 2.046285 GCGGACTGGATTGGGTTGG 61.046 63.158 0.00 0.00 0.00 3.77
237 238 2.046285 GGCGGACTGGATTGGGTTG 61.046 63.158 0.00 0.00 0.00 3.77
238 239 2.355115 GGCGGACTGGATTGGGTT 59.645 61.111 0.00 0.00 0.00 4.11
240 241 2.893682 GAAGGGCGGACTGGATTGGG 62.894 65.000 0.00 0.00 0.00 4.12
241 242 1.452108 GAAGGGCGGACTGGATTGG 60.452 63.158 0.00 0.00 0.00 3.16
242 243 0.107017 ATGAAGGGCGGACTGGATTG 60.107 55.000 0.00 0.00 0.00 2.67
243 244 0.181350 GATGAAGGGCGGACTGGATT 59.819 55.000 0.00 0.00 0.00 3.01
245 246 1.612146 TGATGAAGGGCGGACTGGA 60.612 57.895 0.00 0.00 0.00 3.86
246 247 1.153289 CTGATGAAGGGCGGACTGG 60.153 63.158 0.00 0.00 0.00 4.00
247 248 0.460987 GTCTGATGAAGGGCGGACTG 60.461 60.000 0.00 0.00 37.42 3.51
249 250 0.179097 GAGTCTGATGAAGGGCGGAC 60.179 60.000 0.00 0.00 40.00 4.79
252 253 0.809241 GCAGAGTCTGATGAAGGGCG 60.809 60.000 24.55 0.00 32.44 6.13
253 254 0.251354 TGCAGAGTCTGATGAAGGGC 59.749 55.000 24.55 6.11 32.44 5.19
255 256 2.418471 GGAGTGCAGAGTCTGATGAAGG 60.418 54.545 24.55 0.00 32.44 3.46
256 257 2.233186 TGGAGTGCAGAGTCTGATGAAG 59.767 50.000 24.55 0.00 32.44 3.02
257 258 2.028658 GTGGAGTGCAGAGTCTGATGAA 60.029 50.000 24.55 2.84 32.44 2.57
258 259 1.547820 GTGGAGTGCAGAGTCTGATGA 59.452 52.381 24.55 3.59 32.44 2.92
261 262 0.178950 AGGTGGAGTGCAGAGTCTGA 60.179 55.000 24.55 6.27 32.44 3.27
262 263 0.246086 GAGGTGGAGTGCAGAGTCTG 59.754 60.000 16.21 16.21 34.12 3.51
270 271 1.448540 CATGACGGAGGTGGAGTGC 60.449 63.158 0.00 0.00 0.00 4.40
272 273 2.660064 GGCATGACGGAGGTGGAGT 61.660 63.158 0.00 0.00 0.00 3.85
273 274 2.187946 GGCATGACGGAGGTGGAG 59.812 66.667 0.00 0.00 0.00 3.86
276 277 2.187946 GAGGGCATGACGGAGGTG 59.812 66.667 0.00 0.00 0.00 4.00
277 278 2.284625 TGAGGGCATGACGGAGGT 60.285 61.111 0.00 0.00 0.00 3.85
278 279 2.187946 GTGAGGGCATGACGGAGG 59.812 66.667 0.00 0.00 0.00 4.30
279 280 1.448540 GTGTGAGGGCATGACGGAG 60.449 63.158 0.00 0.00 0.00 4.63
282 283 1.742880 CCTGTGTGAGGGCATGACG 60.743 63.158 0.00 0.00 38.36 4.35
294 295 4.189580 AACCAGCGCCACCTGTGT 62.190 61.111 2.29 0.00 0.00 3.72
295 296 2.449031 TAGAACCAGCGCCACCTGTG 62.449 60.000 2.29 0.00 0.00 3.66
296 297 1.764571 TTAGAACCAGCGCCACCTGT 61.765 55.000 2.29 0.00 0.00 4.00
297 298 1.003839 TTAGAACCAGCGCCACCTG 60.004 57.895 2.29 0.00 0.00 4.00
298 299 1.003718 GTTAGAACCAGCGCCACCT 60.004 57.895 2.29 0.00 0.00 4.00
299 300 3.574780 GTTAGAACCAGCGCCACC 58.425 61.111 2.29 0.00 0.00 4.61
309 310 0.251165 TTGCCTGGCTGGGTTAGAAC 60.251 55.000 21.03 0.00 36.00 3.01
311 312 1.378762 GTTGCCTGGCTGGGTTAGA 59.621 57.895 21.03 0.00 36.00 2.10
313 314 2.012824 TTGGTTGCCTGGCTGGGTTA 62.013 55.000 21.03 0.00 36.00 2.85
314 315 3.387609 TTGGTTGCCTGGCTGGGTT 62.388 57.895 21.03 0.00 36.00 4.11
315 316 3.815407 CTTGGTTGCCTGGCTGGGT 62.815 63.158 21.03 0.00 36.00 4.51
316 317 2.793317 ATCTTGGTTGCCTGGCTGGG 62.793 60.000 21.03 2.60 36.00 4.45
317 318 0.034186 TATCTTGGTTGCCTGGCTGG 60.034 55.000 21.03 5.98 39.35 4.85
318 319 1.065199 TCTATCTTGGTTGCCTGGCTG 60.065 52.381 21.03 3.45 0.00 4.85
320 321 1.952296 CATCTATCTTGGTTGCCTGGC 59.048 52.381 12.87 12.87 0.00 4.85
322 323 1.952296 GCCATCTATCTTGGTTGCCTG 59.048 52.381 0.00 0.00 36.57 4.85
323 324 1.133668 GGCCATCTATCTTGGTTGCCT 60.134 52.381 0.00 0.00 36.57 4.75
325 326 2.158696 AGAGGCCATCTATCTTGGTTGC 60.159 50.000 5.01 0.00 36.10 4.17
326 327 3.495806 GGAGAGGCCATCTATCTTGGTTG 60.496 52.174 5.01 0.00 38.84 3.77
332 333 2.621556 GAGGGAGAGGCCATCTATCT 57.378 55.000 5.01 0.00 44.04 1.98
345 453 8.976353 ACAAGCATACATATATTAGAGAGGGAG 58.024 37.037 0.00 0.00 0.00 4.30
346 454 8.901472 ACAAGCATACATATATTAGAGAGGGA 57.099 34.615 0.00 0.00 0.00 4.20
347 455 9.376075 CAACAAGCATACATATATTAGAGAGGG 57.624 37.037 0.00 0.00 0.00 4.30
352 460 9.489084 GGACACAACAAGCATACATATATTAGA 57.511 33.333 0.00 0.00 0.00 2.10
354 462 9.271828 CAGGACACAACAAGCATACATATATTA 57.728 33.333 0.00 0.00 0.00 0.98
355 463 7.775093 ACAGGACACAACAAGCATACATATATT 59.225 33.333 0.00 0.00 0.00 1.28
358 466 5.500234 ACAGGACACAACAAGCATACATAT 58.500 37.500 0.00 0.00 0.00 1.78
360 468 3.754965 ACAGGACACAACAAGCATACAT 58.245 40.909 0.00 0.00 0.00 2.29
361 469 3.207265 ACAGGACACAACAAGCATACA 57.793 42.857 0.00 0.00 0.00 2.29
362 470 4.568152 AAACAGGACACAACAAGCATAC 57.432 40.909 0.00 0.00 0.00 2.39
363 471 6.238897 CCTTAAAACAGGACACAACAAGCATA 60.239 38.462 0.00 0.00 35.71 3.14
365 473 4.142271 CCTTAAAACAGGACACAACAAGCA 60.142 41.667 0.00 0.00 35.71 3.91
366 474 4.142249 ACCTTAAAACAGGACACAACAAGC 60.142 41.667 0.00 0.00 37.39 4.01
367 475 5.576447 ACCTTAAAACAGGACACAACAAG 57.424 39.130 0.00 0.00 37.39 3.16
372 480 5.357596 GGTACAAACCTTAAAACAGGACACA 59.642 40.000 0.00 0.00 43.08 3.72
373 481 5.824429 GGTACAAACCTTAAAACAGGACAC 58.176 41.667 0.00 0.00 43.08 3.67
388 496 8.094798 TGATGATGAACAGTTAAGGTACAAAC 57.905 34.615 0.00 0.00 0.00 2.93
391 499 8.862325 ATTTGATGATGAACAGTTAAGGTACA 57.138 30.769 0.00 0.00 0.00 2.90
392 500 8.946085 TGATTTGATGATGAACAGTTAAGGTAC 58.054 33.333 0.00 0.00 0.00 3.34
393 501 9.513906 TTGATTTGATGATGAACAGTTAAGGTA 57.486 29.630 0.00 0.00 0.00 3.08
395 503 9.865321 ATTTGATTTGATGATGAACAGTTAAGG 57.135 29.630 0.00 0.00 0.00 2.69
399 507 9.767228 TTTGATTTGATTTGATGATGAACAGTT 57.233 25.926 0.00 0.00 0.00 3.16
400 508 9.938280 ATTTGATTTGATTTGATGATGAACAGT 57.062 25.926 0.00 0.00 0.00 3.55
402 510 9.373603 GGATTTGATTTGATTTGATGATGAACA 57.626 29.630 0.00 0.00 0.00 3.18
403 511 9.595823 AGGATTTGATTTGATTTGATGATGAAC 57.404 29.630 0.00 0.00 0.00 3.18
404 512 9.811995 GAGGATTTGATTTGATTTGATGATGAA 57.188 29.630 0.00 0.00 0.00 2.57
405 513 9.197306 AGAGGATTTGATTTGATTTGATGATGA 57.803 29.630 0.00 0.00 0.00 2.92
410 518 9.129532 GACCTAGAGGATTTGATTTGATTTGAT 57.870 33.333 1.60 0.00 38.94 2.57
411 519 7.557719 GGACCTAGAGGATTTGATTTGATTTGA 59.442 37.037 1.60 0.00 38.94 2.69
412 520 7.559170 AGGACCTAGAGGATTTGATTTGATTTG 59.441 37.037 1.60 0.00 38.94 2.32
413 521 7.646884 AGGACCTAGAGGATTTGATTTGATTT 58.353 34.615 1.60 0.00 38.94 2.17
414 522 7.218314 AGGACCTAGAGGATTTGATTTGATT 57.782 36.000 1.60 0.00 38.94 2.57
415 523 6.838401 AGGACCTAGAGGATTTGATTTGAT 57.162 37.500 1.60 0.00 38.94 2.57
417 525 5.591877 CCAAGGACCTAGAGGATTTGATTTG 59.408 44.000 1.60 0.00 38.94 2.32
418 526 5.340360 CCCAAGGACCTAGAGGATTTGATTT 60.340 44.000 1.60 0.00 38.94 2.17
419 527 4.166919 CCCAAGGACCTAGAGGATTTGATT 59.833 45.833 1.60 0.00 38.94 2.57
420 528 3.718956 CCCAAGGACCTAGAGGATTTGAT 59.281 47.826 1.60 0.00 38.94 2.57
423 531 1.847088 GCCCAAGGACCTAGAGGATTT 59.153 52.381 1.60 0.00 38.94 2.17
424 532 1.274416 TGCCCAAGGACCTAGAGGATT 60.274 52.381 1.60 0.00 38.94 3.01
427 535 0.618968 AGTGCCCAAGGACCTAGAGG 60.619 60.000 0.00 0.00 42.17 3.69
429 537 1.553690 GCAGTGCCCAAGGACCTAGA 61.554 60.000 2.85 0.00 0.00 2.43
430 538 1.078143 GCAGTGCCCAAGGACCTAG 60.078 63.158 2.85 0.00 0.00 3.02
432 540 2.856000 AGCAGTGCCCAAGGACCT 60.856 61.111 12.58 0.00 0.00 3.85
433 541 2.360475 GAGCAGTGCCCAAGGACC 60.360 66.667 12.58 0.00 0.00 4.46
434 542 2.167398 TACGAGCAGTGCCCAAGGAC 62.167 60.000 12.58 0.00 0.00 3.85
435 543 1.911269 TACGAGCAGTGCCCAAGGA 60.911 57.895 12.58 0.00 0.00 3.36
436 544 1.741770 GTACGAGCAGTGCCCAAGG 60.742 63.158 12.58 0.00 0.00 3.61
438 546 2.048597 CGTACGAGCAGTGCCCAA 60.049 61.111 10.44 0.00 31.32 4.12
442 550 0.386352 TACACACGTACGAGCAGTGC 60.386 55.000 24.41 7.13 39.31 4.40
443 551 2.040714 TTACACACGTACGAGCAGTG 57.959 50.000 24.41 23.30 41.28 3.66
444 552 2.592194 CATTACACACGTACGAGCAGT 58.408 47.619 24.41 17.95 0.00 4.40
447 555 1.652124 CACCATTACACACGTACGAGC 59.348 52.381 24.41 0.00 0.00 5.03
448 556 2.912967 GTCACCATTACACACGTACGAG 59.087 50.000 24.41 17.53 0.00 4.18
452 560 2.892215 TGAGGTCACCATTACACACGTA 59.108 45.455 0.00 0.00 0.00 3.57
453 561 1.689813 TGAGGTCACCATTACACACGT 59.310 47.619 0.00 0.00 0.00 4.49
454 562 2.066262 GTGAGGTCACCATTACACACG 58.934 52.381 0.00 0.00 40.85 4.49
477 585 4.371786 ACCATACGTCAGATATGCACTTG 58.628 43.478 0.00 0.00 0.00 3.16
480 588 3.983988 CAGACCATACGTCAGATATGCAC 59.016 47.826 0.00 0.00 44.66 4.57
481 589 3.552890 GCAGACCATACGTCAGATATGCA 60.553 47.826 0.00 0.00 44.66 3.96
482 590 2.989840 GCAGACCATACGTCAGATATGC 59.010 50.000 0.00 0.00 44.66 3.14
483 591 3.579709 GGCAGACCATACGTCAGATATG 58.420 50.000 0.00 0.00 44.66 1.78
484 592 2.229062 CGGCAGACCATACGTCAGATAT 59.771 50.000 0.00 0.00 44.66 1.63
486 594 0.385751 CGGCAGACCATACGTCAGAT 59.614 55.000 0.00 0.00 44.66 2.90
488 596 0.802222 CACGGCAGACCATACGTCAG 60.802 60.000 0.00 0.00 44.66 3.51
489 597 1.214325 CACGGCAGACCATACGTCA 59.786 57.895 0.00 0.00 44.66 4.35
490 598 2.165301 GCACGGCAGACCATACGTC 61.165 63.158 0.00 0.00 42.32 4.34
493 601 2.125673 ACGCACGGCAGACCATAC 60.126 61.111 0.00 0.00 34.57 2.39
494 602 2.161078 TTGACGCACGGCAGACCATA 62.161 55.000 0.00 0.00 33.06 2.74
495 603 2.803155 ATTGACGCACGGCAGACCAT 62.803 55.000 0.00 0.00 33.06 3.55
497 605 1.852067 AAATTGACGCACGGCAGACC 61.852 55.000 0.00 0.00 33.06 3.85
499 607 1.514003 TAAAATTGACGCACGGCAGA 58.486 45.000 0.00 0.00 33.06 4.26
500 608 2.542766 ATAAAATTGACGCACGGCAG 57.457 45.000 0.00 0.00 33.06 4.85
505 1596 7.043059 TCCACAAGAAAAATAAAATTGACGCAC 60.043 33.333 0.00 0.00 0.00 5.34
528 1619 5.420739 AGACACTAGCTTTTTGGTTTTTCCA 59.579 36.000 0.00 0.00 45.60 3.53
529 1620 5.902681 AGACACTAGCTTTTTGGTTTTTCC 58.097 37.500 0.00 0.00 0.00 3.13
534 1625 4.164843 TGGAGACACTAGCTTTTTGGTT 57.835 40.909 0.00 0.00 33.40 3.67
549 1640 0.318275 GCGATCGATGGAGTGGAGAC 60.318 60.000 21.57 0.00 0.00 3.36
550 1641 1.456196 GGCGATCGATGGAGTGGAGA 61.456 60.000 21.57 0.00 0.00 3.71
552 1643 2.498941 GGGCGATCGATGGAGTGGA 61.499 63.158 21.57 0.00 0.00 4.02
553 1644 2.029666 GGGCGATCGATGGAGTGG 59.970 66.667 21.57 0.00 0.00 4.00
554 1645 1.300465 CTGGGCGATCGATGGAGTG 60.300 63.158 21.57 0.00 0.00 3.51
555 1646 1.455773 TCTGGGCGATCGATGGAGT 60.456 57.895 21.57 0.00 0.00 3.85
556 1647 1.006805 GTCTGGGCGATCGATGGAG 60.007 63.158 21.57 8.35 0.00 3.86
557 1648 1.326951 TTGTCTGGGCGATCGATGGA 61.327 55.000 21.57 7.81 0.00 3.41
560 1651 0.103208 GAGTTGTCTGGGCGATCGAT 59.897 55.000 21.57 0.00 0.00 3.59
561 1652 0.965866 AGAGTTGTCTGGGCGATCGA 60.966 55.000 21.57 0.00 0.00 3.59
569 1660 3.129638 GTGTCTAGCCTAGAGTTGTCTGG 59.870 52.174 0.55 0.00 35.04 3.86
570 1661 3.129638 GGTGTCTAGCCTAGAGTTGTCTG 59.870 52.174 0.55 0.00 35.04 3.51
571 1662 3.358118 GGTGTCTAGCCTAGAGTTGTCT 58.642 50.000 0.55 0.00 35.04 3.41
572 1663 2.427812 GGGTGTCTAGCCTAGAGTTGTC 59.572 54.545 0.55 0.00 41.33 3.18
573 1664 2.458620 GGGTGTCTAGCCTAGAGTTGT 58.541 52.381 0.55 0.00 41.33 3.32
575 1666 1.765230 CGGGTGTCTAGCCTAGAGTT 58.235 55.000 0.55 0.00 42.39 3.01
578 1669 0.323999 TTGCGGGTGTCTAGCCTAGA 60.324 55.000 0.00 0.00 42.39 2.43
579 1670 0.535335 TTTGCGGGTGTCTAGCCTAG 59.465 55.000 0.00 0.00 42.39 3.02
604 1695 6.104665 GGTCACGTTAACTAGCCTAGATTTT 58.895 40.000 5.58 0.00 0.00 1.82
605 1696 5.186409 TGGTCACGTTAACTAGCCTAGATTT 59.814 40.000 5.58 0.00 0.00 2.17
607 1698 4.097589 GTGGTCACGTTAACTAGCCTAGAT 59.902 45.833 5.58 0.00 0.00 1.98
609 1700 3.767278 GTGGTCACGTTAACTAGCCTAG 58.233 50.000 3.71 0.00 0.00 3.02
611 1702 2.738013 GTGGTCACGTTAACTAGCCT 57.262 50.000 3.71 0.00 0.00 4.58
623 1714 1.308069 TAGCCGAGTACCGTGGTCAC 61.308 60.000 0.00 0.00 36.31 3.67
627 1718 2.401766 ACGTAGCCGAGTACCGTGG 61.402 63.158 0.00 0.00 37.88 4.94
629 1720 1.364626 CTCACGTAGCCGAGTACCGT 61.365 60.000 0.00 0.00 37.88 4.83
630 1721 1.086067 TCTCACGTAGCCGAGTACCG 61.086 60.000 0.00 0.00 37.88 4.02
634 1725 1.018148 CTCATCTCACGTAGCCGAGT 58.982 55.000 0.00 0.00 37.88 4.18
635 1726 1.300481 TCTCATCTCACGTAGCCGAG 58.700 55.000 0.00 0.00 37.88 4.63
637 1728 1.335182 ACATCTCATCTCACGTAGCCG 59.665 52.381 0.00 0.00 40.83 5.52
639 1730 3.000724 GCAAACATCTCATCTCACGTAGC 59.999 47.826 0.00 0.00 0.00 3.58
640 1731 3.553511 GGCAAACATCTCATCTCACGTAG 59.446 47.826 0.00 0.00 0.00 3.51
642 1733 2.289631 TGGCAAACATCTCATCTCACGT 60.290 45.455 0.00 0.00 0.00 4.49
643 1734 2.349590 TGGCAAACATCTCATCTCACG 58.650 47.619 0.00 0.00 0.00 4.35
644 1735 3.341823 ACTGGCAAACATCTCATCTCAC 58.658 45.455 0.00 0.00 0.00 3.51
645 1736 3.708403 ACTGGCAAACATCTCATCTCA 57.292 42.857 0.00 0.00 0.00 3.27
646 1737 3.427233 GCAACTGGCAAACATCTCATCTC 60.427 47.826 0.00 0.00 43.97 2.75
647 1738 2.490903 GCAACTGGCAAACATCTCATCT 59.509 45.455 0.00 0.00 43.97 2.90
661 2149 1.139989 CTATATCGTGCGGCAACTGG 58.860 55.000 3.23 0.00 0.00 4.00
688 2176 2.914059 ACTTGCCTTGTGTTCGTAGTT 58.086 42.857 0.00 0.00 0.00 2.24
689 2177 2.614829 ACTTGCCTTGTGTTCGTAGT 57.385 45.000 0.00 0.00 0.00 2.73
693 2181 6.422776 AAATCTATACTTGCCTTGTGTTCG 57.577 37.500 0.00 0.00 0.00 3.95
694 2182 8.515414 AGAAAAATCTATACTTGCCTTGTGTTC 58.485 33.333 0.00 0.00 0.00 3.18
695 2183 8.409358 AGAAAAATCTATACTTGCCTTGTGTT 57.591 30.769 0.00 0.00 0.00 3.32
728 5042 7.309499 CGTCTATACTTGCCTTTCTCCTCATAT 60.309 40.741 0.00 0.00 0.00 1.78
729 5043 6.016192 CGTCTATACTTGCCTTTCTCCTCATA 60.016 42.308 0.00 0.00 0.00 2.15
730 5044 5.221342 CGTCTATACTTGCCTTTCTCCTCAT 60.221 44.000 0.00 0.00 0.00 2.90
732 5046 4.612943 CGTCTATACTTGCCTTTCTCCTC 58.387 47.826 0.00 0.00 0.00 3.71
733 5047 3.181474 GCGTCTATACTTGCCTTTCTCCT 60.181 47.826 0.00 0.00 0.00 3.69
734 5048 3.124560 GCGTCTATACTTGCCTTTCTCC 58.875 50.000 0.00 0.00 0.00 3.71
735 5049 2.789893 CGCGTCTATACTTGCCTTTCTC 59.210 50.000 0.00 0.00 0.00 2.87
737 5051 1.258197 GCGCGTCTATACTTGCCTTTC 59.742 52.381 8.43 0.00 0.00 2.62
738 5052 1.287425 GCGCGTCTATACTTGCCTTT 58.713 50.000 8.43 0.00 0.00 3.11
778 5092 2.719426 AGCTGTTCTGCAAATCAAGC 57.281 45.000 4.68 0.00 34.99 4.01
779 5093 5.575606 CCAATAAGCTGTTCTGCAAATCAAG 59.424 40.000 0.00 0.00 34.99 3.02
780 5094 5.472148 CCAATAAGCTGTTCTGCAAATCAA 58.528 37.500 0.00 0.00 34.99 2.57
782 5096 4.427312 CCCAATAAGCTGTTCTGCAAATC 58.573 43.478 0.00 0.00 34.99 2.17
785 5105 1.545582 GCCCAATAAGCTGTTCTGCAA 59.454 47.619 0.00 0.00 34.99 4.08
793 5113 3.553096 CGGTAGTAGAGCCCAATAAGCTG 60.553 52.174 0.00 0.00 41.75 4.24
842 5420 5.923684 CGATCCCTATAAAAGAAGCAGACTC 59.076 44.000 0.00 0.00 0.00 3.36
843 5421 5.740513 GCGATCCCTATAAAAGAAGCAGACT 60.741 44.000 0.00 0.00 0.00 3.24
853 5431 3.496160 GGCTTCAGGCGATCCCTATAAAA 60.496 47.826 2.78 0.00 44.09 1.52
855 5433 1.623811 GGCTTCAGGCGATCCCTATAA 59.376 52.381 2.78 1.40 44.09 0.98
861 5439 2.892425 CGTGGCTTCAGGCGATCC 60.892 66.667 0.00 0.00 44.42 3.36
868 5446 0.877649 CGATGGATCCGTGGCTTCAG 60.878 60.000 12.38 0.00 0.00 3.02
870 5448 0.598680 CTCGATGGATCCGTGGCTTC 60.599 60.000 12.38 0.00 0.00 3.86
871 5449 1.043116 TCTCGATGGATCCGTGGCTT 61.043 55.000 12.38 0.00 0.00 4.35
878 5477 0.892063 GGCTAGGTCTCGATGGATCC 59.108 60.000 4.20 4.20 0.00 3.36
900 5499 2.990967 TCGACCCGCCTTACCGTT 60.991 61.111 0.00 0.00 0.00 4.44
901 5500 3.446570 CTCGACCCGCCTTACCGT 61.447 66.667 0.00 0.00 0.00 4.83
902 5501 4.203076 CCTCGACCCGCCTTACCG 62.203 72.222 0.00 0.00 0.00 4.02
908 5507 3.525545 GTAGGACCTCGACCCGCC 61.526 72.222 0.00 0.00 0.00 6.13
911 5510 1.823041 CCTCGTAGGACCTCGACCC 60.823 68.421 0.00 0.00 37.67 4.46
913 5512 1.294857 GTACCTCGTAGGACCTCGAC 58.705 60.000 0.00 0.00 37.67 4.20
914 5513 0.179000 GGTACCTCGTAGGACCTCGA 59.821 60.000 4.06 6.57 37.67 4.04
915 5514 2.700329 GGTACCTCGTAGGACCTCG 58.300 63.158 4.06 1.80 37.67 4.63
926 5525 3.991744 GTACTCCGAGTAGTGGGTACCTC 60.992 56.522 12.72 5.71 39.76 3.85
927 5526 2.092699 GTACTCCGAGTAGTGGGTACCT 60.093 54.545 12.72 0.00 39.76 3.08
928 5527 2.293170 GTACTCCGAGTAGTGGGTACC 58.707 57.143 8.59 2.17 39.57 3.34
930 5529 1.212935 GGGTACTCCGAGTAGTGGGTA 59.787 57.143 8.59 0.00 30.12 3.69
931 5530 0.033699 GGGTACTCCGAGTAGTGGGT 60.034 60.000 8.59 0.00 30.12 4.51
933 5532 1.677942 GAGGGTACTCCGAGTAGTGG 58.322 60.000 8.59 0.00 41.52 4.00
960 5559 1.665442 GGCGGCCACACATCTTTTT 59.335 52.632 15.62 0.00 0.00 1.94
961 5560 2.625823 CGGCGGCCACACATCTTTT 61.626 57.895 20.71 0.00 0.00 2.27
962 5561 3.055719 CGGCGGCCACACATCTTT 61.056 61.111 20.71 0.00 0.00 2.52
1134 5733 2.852075 AAGGAGGACCGGTGGCAA 60.852 61.111 14.63 0.00 41.83 4.52
1186 5785 4.756135 GCCCAATTTCGGTATTATTACGGA 59.244 41.667 2.04 2.04 36.29 4.69
1191 5791 6.783708 TTCTTGCCCAATTTCGGTATTATT 57.216 33.333 0.00 0.00 0.00 1.40
1204 5804 2.298729 CGGATTTCCTTTTCTTGCCCAA 59.701 45.455 0.00 0.00 0.00 4.12
1302 5902 8.345565 GCGTAGTTGAAGATTCCATCATTATTT 58.654 33.333 0.00 0.00 0.00 1.40
1305 5905 5.462068 CGCGTAGTTGAAGATTCCATCATTA 59.538 40.000 0.00 0.00 0.00 1.90
1308 5908 3.119280 TCGCGTAGTTGAAGATTCCATCA 60.119 43.478 5.77 0.00 0.00 3.07
1357 5957 2.046314 CGGGCGTTTCACCAGGAT 60.046 61.111 0.00 0.00 0.00 3.24
1411 6014 1.009389 CGCTCGCCGATTAAGGGATC 61.009 60.000 0.00 0.00 40.02 3.36
1491 6102 2.631160 TAAGGGCATAACCGGTCATG 57.369 50.000 13.89 13.89 40.62 3.07
1528 6166 3.247236 GATCACAATCACCGGTAACGCA 61.247 50.000 6.87 0.00 44.95 5.24
1545 6183 2.358615 GGCTGCGTGTGGTGATCA 60.359 61.111 0.00 0.00 0.00 2.92
1575 6213 0.683973 AGCAGTGAGTGGTGAAGAGG 59.316 55.000 0.00 0.00 34.82 3.69
1590 6228 6.255950 CAGTTTGTCATTGTCATGATAGCAG 58.744 40.000 0.00 0.00 41.64 4.24
1598 6236 6.240894 ACATACTCCAGTTTGTCATTGTCAT 58.759 36.000 0.00 0.00 35.79 3.06
1599 6237 5.620206 ACATACTCCAGTTTGTCATTGTCA 58.380 37.500 0.00 0.00 35.79 3.58
1600 6238 6.560253 AACATACTCCAGTTTGTCATTGTC 57.440 37.500 3.64 0.00 38.85 3.18
1601 6239 6.959639 AAACATACTCCAGTTTGTCATTGT 57.040 33.333 3.64 0.00 38.85 2.71
1602 6240 7.651808 AGAAAACATACTCCAGTTTGTCATTG 58.348 34.615 3.64 0.00 38.85 2.82
1603 6241 7.721399 AGAGAAAACATACTCCAGTTTGTCATT 59.279 33.333 3.64 3.20 38.85 2.57
1623 6261 3.432186 CCATGGCGGATGAGTAAGAGAAA 60.432 47.826 0.00 0.00 36.56 2.52
1657 6298 1.656587 TGGGAGCACTTGATAGGTGT 58.343 50.000 0.00 0.00 37.07 4.16
1719 6360 1.466950 CAATGCACGATACCACCGTTT 59.533 47.619 0.00 0.00 38.29 3.60
1728 6369 4.998033 TCTTTGTACAACCAATGCACGATA 59.002 37.500 8.07 0.00 0.00 2.92
1827 6468 1.962306 GGGTCGCAAGCCACGTTTA 60.962 57.895 0.00 0.00 42.92 2.01
1841 6482 2.124695 GGATGCACGGGAAGGGTC 60.125 66.667 0.00 0.00 0.00 4.46
1845 6486 1.750399 CCCAAGGATGCACGGGAAG 60.750 63.158 5.13 0.00 41.62 3.46
1953 6600 1.065199 TGCAGCCATCCTTCCTTACTG 60.065 52.381 0.00 0.00 0.00 2.74
1954 6601 1.065126 GTGCAGCCATCCTTCCTTACT 60.065 52.381 0.00 0.00 0.00 2.24
1969 6616 1.090625 GGCATCAGCTCAGAGTGCAG 61.091 60.000 11.70 0.00 41.70 4.41
1977 6624 0.762082 CCTCTAGGGGCATCAGCTCA 60.762 60.000 0.00 0.00 45.55 4.26
2004 6651 3.002791 TGCAAAGGACACGATCTCAATC 58.997 45.455 0.00 0.00 0.00 2.67
2014 6661 1.270518 TGAGCTCTCTGCAAAGGACAC 60.271 52.381 16.19 0.00 45.94 3.67
2088 6735 2.585330 TGCTCCATTTTCTTGCTCACA 58.415 42.857 0.00 0.00 0.00 3.58
3037 9645 4.112634 AGCCCCAAGTCATTTTCTGTTA 57.887 40.909 0.00 0.00 0.00 2.41
3053 9661 3.584733 ACTATTGGATCTTGAAGCCCC 57.415 47.619 0.00 0.00 29.81 5.80
3186 9820 3.455910 TGCTTCTATTAGGTGTGGCTGAT 59.544 43.478 0.00 0.00 0.00 2.90
3228 9862 4.181578 TGATTACGAAAAGGTAGCAGCTC 58.818 43.478 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.