Multiple sequence alignment - TraesCS3B01G482500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G482500 chr3B 100.000 2471 0 0 1 2471 729688957 729686487 0.000000e+00 4564.0
1 TraesCS3B01G482500 chr3B 88.387 155 13 5 1726 1876 421011925 421012078 5.430000e-42 182.0
2 TraesCS3B01G482500 chr3B 88.119 101 12 0 2162 2262 204572182 204572082 1.200000e-23 121.0
3 TraesCS3B01G482500 chr3B 82.000 150 19 6 1990 2135 729593947 729593802 1.200000e-23 121.0
4 TraesCS3B01G482500 chr3B 80.800 125 18 6 1759 1881 540101448 540101568 2.620000e-15 93.5
5 TraesCS3B01G482500 chr3A 90.950 663 41 8 1006 1658 686993455 686992802 0.000000e+00 874.0
6 TraesCS3B01G482500 chr3A 89.493 552 45 7 423 964 687010717 687010169 0.000000e+00 686.0
7 TraesCS3B01G482500 chr3A 84.553 492 47 13 1008 1481 686931663 686931183 6.230000e-126 460.0
8 TraesCS3B01G482500 chr3A 91.318 311 26 1 1 310 687026571 687026261 8.170000e-115 424.0
9 TraesCS3B01G482500 chr3A 80.045 441 80 5 1045 1481 686922890 686922454 1.100000e-83 320.0
10 TraesCS3B01G482500 chr3A 84.494 316 35 5 1167 1481 686986093 686985791 1.440000e-77 300.0
11 TraesCS3B01G482500 chr3A 80.980 347 30 20 612 926 686940612 686940270 2.460000e-60 243.0
12 TraesCS3B01G482500 chr3A 83.607 122 14 5 2157 2275 693975985 693975867 2.600000e-20 110.0
13 TraesCS3B01G482500 chr3A 85.417 96 12 2 813 907 686989981 686989887 5.620000e-17 99.0
14 TraesCS3B01G482500 chr3A 76.744 172 38 2 1172 1342 747076217 747076047 7.270000e-16 95.3
15 TraesCS3B01G482500 chr3D 87.942 622 43 13 625 1235 550200413 550199813 0.000000e+00 704.0
16 TraesCS3B01G482500 chr3D 86.833 600 41 15 1 576 550200985 550200400 9.640000e-179 636.0
17 TraesCS3B01G482500 chr3D 97.425 233 6 0 1241 1473 550198323 550198091 4.950000e-107 398.0
18 TraesCS3B01G482500 chr3D 93.820 178 10 1 6 182 550704946 550705123 1.460000e-67 267.0
19 TraesCS3B01G482500 chr3D 93.258 178 11 1 6 182 550700895 550701072 6.780000e-66 261.0
20 TraesCS3B01G482500 chr3D 86.364 242 26 5 1242 1481 550197746 550197510 8.770000e-65 257.0
21 TraesCS3B01G482500 chr3D 85.340 191 13 11 1552 1728 550198075 550197886 1.510000e-42 183.0
22 TraesCS3B01G482500 chr3D 86.624 157 14 7 1732 1882 75380480 75380325 1.520000e-37 167.0
23 TraesCS3B01G482500 chr3D 79.882 169 34 0 1150 1318 612528309 612528477 9.280000e-25 124.0
24 TraesCS3B01G482500 chr4D 77.839 731 119 28 14 718 95672853 95672140 1.770000e-111 412.0
25 TraesCS3B01G482500 chr4D 85.938 128 14 4 1731 1855 54673525 54673651 1.540000e-27 134.0
26 TraesCS3B01G482500 chr4D 88.350 103 11 1 2160 2262 176797367 176797468 3.340000e-24 122.0
27 TraesCS3B01G482500 chr4D 86.792 106 13 1 2157 2262 469170629 469170525 1.550000e-22 117.0
28 TraesCS3B01G482500 chr1D 81.157 536 66 21 214 722 447927767 447927240 4.950000e-107 398.0
29 TraesCS3B01G482500 chr4B 76.543 729 128 31 16 715 171021757 171022471 2.340000e-95 359.0
30 TraesCS3B01G482500 chr6B 78.037 428 74 15 1058 1481 633363432 633363843 4.080000e-63 252.0
31 TraesCS3B01G482500 chr6D 89.241 158 12 4 1726 1878 292078908 292079065 2.510000e-45 193.0
32 TraesCS3B01G482500 chr6D 88.350 103 12 0 2160 2262 412737114 412737012 9.280000e-25 124.0
33 TraesCS3B01G482500 chr6D 84.762 105 13 3 1726 1827 164768421 164768317 4.350000e-18 102.0
34 TraesCS3B01G482500 chr7B 86.861 137 14 4 1744 1876 595794595 595794731 1.530000e-32 150.0
35 TraesCS3B01G482500 chr1B 84.076 157 19 5 1726 1876 392000504 392000348 1.980000e-31 147.0
36 TraesCS3B01G482500 chr1B 88.182 110 10 3 1769 1876 623959509 623959401 7.170000e-26 128.0
37 TraesCS3B01G482500 chr5A 84.106 151 15 8 1732 1878 386469117 386468972 1.190000e-28 137.0
38 TraesCS3B01G482500 chr7D 89.524 105 9 2 2159 2262 317626750 317626853 5.540000e-27 132.0
39 TraesCS3B01G482500 chr2A 90.196 102 8 2 2162 2262 721029004 721028904 5.540000e-27 132.0
40 TraesCS3B01G482500 chr2B 89.899 99 10 0 2162 2260 205644230 205644328 7.170000e-26 128.0
41 TraesCS3B01G482500 chr2B 88.350 103 10 1 2160 2262 73298569 73298669 3.340000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G482500 chr3B 729686487 729688957 2470 True 4564.000000 4564 100.000000 1 2471 1 chr3B.!!$R3 2470
1 TraesCS3B01G482500 chr3A 687010169 687010717 548 True 686.000000 686 89.493000 423 964 1 chr3A.!!$R4 541
2 TraesCS3B01G482500 chr3A 686985791 686993455 7664 True 424.333333 874 86.953667 813 1658 3 chr3A.!!$R8 845
3 TraesCS3B01G482500 chr3D 550197510 550200985 3475 True 435.600000 704 88.780800 1 1728 5 chr3D.!!$R2 1727
4 TraesCS3B01G482500 chr3D 550700895 550705123 4228 False 264.000000 267 93.539000 6 182 2 chr3D.!!$F2 176
5 TraesCS3B01G482500 chr4D 95672140 95672853 713 True 412.000000 412 77.839000 14 718 1 chr4D.!!$R1 704
6 TraesCS3B01G482500 chr1D 447927240 447927767 527 True 398.000000 398 81.157000 214 722 1 chr1D.!!$R1 508
7 TraesCS3B01G482500 chr4B 171021757 171022471 714 False 359.000000 359 76.543000 16 715 1 chr4B.!!$F1 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 1311 0.039035 CCTCCCCCAACCGATCAAAA 59.961 55.0 0.0 0.0 0.0 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 4369 0.041576 GGCGAACCGGCGATATTTTC 60.042 55.0 9.3 1.82 43.33 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 9.463443 GAGAAGTTTCTAAGATCTCTCTAATGC 57.537 37.037 0.00 0.00 37.73 3.56
208 210 4.953667 TCTCTACATGCAATTGCCTCTAG 58.046 43.478 26.94 17.69 41.18 2.43
287 290 0.525668 CACGGTCTCGACATACAGCC 60.526 60.000 0.00 0.00 40.11 4.85
322 325 5.050363 CCACATTATGTTCTATCGAAACCCG 60.050 44.000 0.00 0.00 40.25 5.28
335 338 2.095263 CGAAACCCGAGCATTGACATTT 60.095 45.455 0.00 0.00 41.76 2.32
336 339 3.611530 CGAAACCCGAGCATTGACATTTT 60.612 43.478 0.00 0.00 41.76 1.82
337 340 3.575965 AACCCGAGCATTGACATTTTC 57.424 42.857 0.00 0.00 0.00 2.29
380 383 3.909732 TGGGATCCACTTGAAACTTTGT 58.090 40.909 15.23 0.00 0.00 2.83
409 412 4.464008 TGCTCTGAAACTGTCCTCATTTT 58.536 39.130 0.00 0.00 0.00 1.82
410 413 4.276678 TGCTCTGAAACTGTCCTCATTTTG 59.723 41.667 0.00 0.00 0.00 2.44
413 416 4.036734 TCTGAAACTGTCCTCATTTTGTGC 59.963 41.667 0.00 0.00 0.00 4.57
415 418 4.402155 TGAAACTGTCCTCATTTTGTGCTT 59.598 37.500 0.00 0.00 0.00 3.91
416 419 4.574599 AACTGTCCTCATTTTGTGCTTC 57.425 40.909 0.00 0.00 0.00 3.86
417 420 3.825328 ACTGTCCTCATTTTGTGCTTCT 58.175 40.909 0.00 0.00 0.00 2.85
419 422 2.886523 TGTCCTCATTTTGTGCTTCTGG 59.113 45.455 0.00 0.00 0.00 3.86
436 461 2.302733 TCTGGCTGCTATGAAGTTGACA 59.697 45.455 0.00 0.00 0.00 3.58
500 525 6.094739 TCATGAATTAGTTTTCTTCGAGCG 57.905 37.500 0.00 0.00 0.00 5.03
502 527 6.809689 TCATGAATTAGTTTTCTTCGAGCGTA 59.190 34.615 0.00 0.00 0.00 4.42
509 534 4.025145 AGTTTTCTTCGAGCGTAACCAAAG 60.025 41.667 0.00 0.00 0.00 2.77
511 536 3.921119 TCTTCGAGCGTAACCAAAGTA 57.079 42.857 0.00 0.00 0.00 2.24
588 929 3.311322 TGAAAAACAACTAGGCACGTGAG 59.689 43.478 22.23 10.69 0.00 3.51
696 1038 2.354259 CTGTGTCTCCAGGAATCTTGC 58.646 52.381 0.00 0.00 0.00 4.01
697 1039 1.699083 TGTGTCTCCAGGAATCTTGCA 59.301 47.619 0.00 0.00 0.00 4.08
758 1102 3.121738 ACTAAAACAGTCCTTCACGGG 57.878 47.619 0.00 0.00 28.33 5.28
770 1114 2.864343 CCTTCACGGGTAGCTAATTTCG 59.136 50.000 0.00 0.00 0.00 3.46
774 1118 4.178540 TCACGGGTAGCTAATTTCGAAAG 58.821 43.478 16.80 3.79 0.00 2.62
798 1142 7.870826 AGAAAACACTTTTTGGTTTGGAAAAG 58.129 30.769 6.94 6.94 45.68 2.27
811 1155 5.629435 GGTTTGGAAAAGCAGAGATAAAACG 59.371 40.000 0.00 0.00 0.00 3.60
816 1160 5.411669 GGAAAAGCAGAGATAAAACGGAAGA 59.588 40.000 0.00 0.00 0.00 2.87
883 1227 1.301716 CGGTGACAGAGTTGGGGTG 60.302 63.158 0.00 0.00 0.00 4.61
884 1228 1.837090 GGTGACAGAGTTGGGGTGT 59.163 57.895 0.00 0.00 0.00 4.16
887 1231 1.134220 GTGACAGAGTTGGGGTGTGAA 60.134 52.381 0.00 0.00 0.00 3.18
888 1232 1.774254 TGACAGAGTTGGGGTGTGAAT 59.226 47.619 0.00 0.00 0.00 2.57
889 1233 2.976185 TGACAGAGTTGGGGTGTGAATA 59.024 45.455 0.00 0.00 0.00 1.75
890 1234 3.587061 TGACAGAGTTGGGGTGTGAATAT 59.413 43.478 0.00 0.00 0.00 1.28
891 1235 3.941483 GACAGAGTTGGGGTGTGAATATG 59.059 47.826 0.00 0.00 0.00 1.78
892 1236 3.330701 ACAGAGTTGGGGTGTGAATATGT 59.669 43.478 0.00 0.00 0.00 2.29
893 1237 3.941483 CAGAGTTGGGGTGTGAATATGTC 59.059 47.826 0.00 0.00 0.00 3.06
894 1238 3.846588 AGAGTTGGGGTGTGAATATGTCT 59.153 43.478 0.00 0.00 0.00 3.41
895 1239 5.030147 AGAGTTGGGGTGTGAATATGTCTA 58.970 41.667 0.00 0.00 0.00 2.59
896 1240 5.129485 AGAGTTGGGGTGTGAATATGTCTAG 59.871 44.000 0.00 0.00 0.00 2.43
897 1241 4.164221 AGTTGGGGTGTGAATATGTCTAGG 59.836 45.833 0.00 0.00 0.00 3.02
899 1243 2.372172 GGGGTGTGAATATGTCTAGGGG 59.628 54.545 0.00 0.00 0.00 4.79
900 1244 3.046374 GGGTGTGAATATGTCTAGGGGT 58.954 50.000 0.00 0.00 0.00 4.95
902 1246 4.079958 GGGTGTGAATATGTCTAGGGGTTT 60.080 45.833 0.00 0.00 0.00 3.27
903 1247 5.123936 GGTGTGAATATGTCTAGGGGTTTC 58.876 45.833 0.00 0.00 0.00 2.78
905 1249 4.468510 TGTGAATATGTCTAGGGGTTTCGT 59.531 41.667 0.00 0.00 0.00 3.85
906 1250 5.046159 TGTGAATATGTCTAGGGGTTTCGTT 60.046 40.000 0.00 0.00 0.00 3.85
907 1251 5.522824 GTGAATATGTCTAGGGGTTTCGTTC 59.477 44.000 0.00 0.00 0.00 3.95
909 1253 3.611766 ATGTCTAGGGGTTTCGTTCTG 57.388 47.619 0.00 0.00 0.00 3.02
910 1254 2.322658 TGTCTAGGGGTTTCGTTCTGT 58.677 47.619 0.00 0.00 0.00 3.41
911 1255 2.701951 TGTCTAGGGGTTTCGTTCTGTT 59.298 45.455 0.00 0.00 0.00 3.16
912 1256 3.243975 TGTCTAGGGGTTTCGTTCTGTTC 60.244 47.826 0.00 0.00 0.00 3.18
913 1257 2.301009 TCTAGGGGTTTCGTTCTGTTCC 59.699 50.000 0.00 0.00 0.00 3.62
914 1258 1.137697 AGGGGTTTCGTTCTGTTCCT 58.862 50.000 0.00 0.00 0.00 3.36
916 1260 1.071857 GGGGTTTCGTTCTGTTCCTCT 59.928 52.381 0.00 0.00 0.00 3.69
917 1261 2.414806 GGGTTTCGTTCTGTTCCTCTC 58.585 52.381 0.00 0.00 0.00 3.20
920 1264 3.006003 GGTTTCGTTCTGTTCCTCTCTCT 59.994 47.826 0.00 0.00 0.00 3.10
921 1265 4.231439 GTTTCGTTCTGTTCCTCTCTCTC 58.769 47.826 0.00 0.00 0.00 3.20
922 1266 3.426787 TCGTTCTGTTCCTCTCTCTCT 57.573 47.619 0.00 0.00 0.00 3.10
923 1267 4.554960 TCGTTCTGTTCCTCTCTCTCTA 57.445 45.455 0.00 0.00 0.00 2.43
924 1268 5.105567 TCGTTCTGTTCCTCTCTCTCTAT 57.894 43.478 0.00 0.00 0.00 1.98
925 1269 6.236558 TCGTTCTGTTCCTCTCTCTCTATA 57.763 41.667 0.00 0.00 0.00 1.31
926 1270 6.833041 TCGTTCTGTTCCTCTCTCTCTATAT 58.167 40.000 0.00 0.00 0.00 0.86
927 1271 7.964624 TCGTTCTGTTCCTCTCTCTCTATATA 58.035 38.462 0.00 0.00 0.00 0.86
928 1272 8.430431 TCGTTCTGTTCCTCTCTCTCTATATAA 58.570 37.037 0.00 0.00 0.00 0.98
929 1273 9.058174 CGTTCTGTTCCTCTCTCTCTATATAAA 57.942 37.037 0.00 0.00 0.00 1.40
934 1278 9.004717 TGTTCCTCTCTCTCTATATAAATCACG 57.995 37.037 0.00 0.00 0.00 4.35
935 1279 7.618502 TCCTCTCTCTCTATATAAATCACGC 57.381 40.000 0.00 0.00 0.00 5.34
938 1282 8.826710 CCTCTCTCTCTATATAAATCACGCTAG 58.173 40.741 0.00 0.00 0.00 3.42
942 1286 9.036671 TCTCTCTATATAAATCACGCTAGATCG 57.963 37.037 0.00 0.00 0.00 3.69
946 1290 8.775527 TCTATATAAATCACGCTAGATCGATCC 58.224 37.037 21.66 5.96 0.00 3.36
947 1291 5.906113 ATAAATCACGCTAGATCGATCCT 57.094 39.130 21.66 11.52 0.00 3.24
948 1292 3.840890 AATCACGCTAGATCGATCCTC 57.159 47.619 21.66 10.00 0.00 3.71
950 1294 1.072489 TCACGCTAGATCGATCCTCCT 59.928 52.381 21.66 5.96 0.00 3.69
951 1295 1.466950 CACGCTAGATCGATCCTCCTC 59.533 57.143 21.66 6.28 0.00 3.71
952 1296 1.091537 CGCTAGATCGATCCTCCTCC 58.908 60.000 21.66 4.24 0.00 4.30
953 1297 1.470051 GCTAGATCGATCCTCCTCCC 58.530 60.000 21.66 0.48 0.00 4.30
954 1298 1.958069 GCTAGATCGATCCTCCTCCCC 60.958 61.905 21.66 0.00 0.00 4.81
960 1304 2.366972 ATCCTCCTCCCCCAACCG 60.367 66.667 0.00 0.00 0.00 4.44
961 1305 2.891307 GATCCTCCTCCCCCAACCGA 62.891 65.000 0.00 0.00 0.00 4.69
962 1306 2.271493 ATCCTCCTCCCCCAACCGAT 62.271 60.000 0.00 0.00 0.00 4.18
964 1308 1.689233 CTCCTCCCCCAACCGATCA 60.689 63.158 0.00 0.00 0.00 2.92
965 1309 1.229690 TCCTCCCCCAACCGATCAA 60.230 57.895 0.00 0.00 0.00 2.57
966 1310 0.842905 TCCTCCCCCAACCGATCAAA 60.843 55.000 0.00 0.00 0.00 2.69
967 1311 0.039035 CCTCCCCCAACCGATCAAAA 59.961 55.000 0.00 0.00 0.00 2.44
971 1315 0.887933 CCCCAACCGATCAAAACCAG 59.112 55.000 0.00 0.00 0.00 4.00
972 1316 0.243636 CCCAACCGATCAAAACCAGC 59.756 55.000 0.00 0.00 0.00 4.85
973 1317 0.958091 CCAACCGATCAAAACCAGCA 59.042 50.000 0.00 0.00 0.00 4.41
974 1318 1.339610 CCAACCGATCAAAACCAGCAA 59.660 47.619 0.00 0.00 0.00 3.91
976 1320 2.793278 ACCGATCAAAACCAGCAAAC 57.207 45.000 0.00 0.00 0.00 2.93
980 1324 3.554752 CCGATCAAAACCAGCAAACCAAT 60.555 43.478 0.00 0.00 0.00 3.16
981 1325 3.674753 CGATCAAAACCAGCAAACCAATC 59.325 43.478 0.00 0.00 0.00 2.67
983 1327 2.768527 TCAAAACCAGCAAACCAATCCA 59.231 40.909 0.00 0.00 0.00 3.41
984 1328 2.871633 CAAAACCAGCAAACCAATCCAC 59.128 45.455 0.00 0.00 0.00 4.02
985 1329 1.786937 AACCAGCAAACCAATCCACA 58.213 45.000 0.00 0.00 0.00 4.17
987 1331 0.039256 CCAGCAAACCAATCCACACG 60.039 55.000 0.00 0.00 0.00 4.49
989 1333 1.069022 CAGCAAACCAATCCACACGAG 60.069 52.381 0.00 0.00 0.00 4.18
990 1334 0.951558 GCAAACCAATCCACACGAGT 59.048 50.000 0.00 0.00 0.00 4.18
992 1336 1.194547 CAAACCAATCCACACGAGTCG 59.805 52.381 11.85 11.85 0.00 4.18
994 1338 0.243907 ACCAATCCACACGAGTCGAG 59.756 55.000 21.50 14.68 0.00 4.04
995 1339 0.458543 CCAATCCACACGAGTCGAGG 60.459 60.000 21.50 17.12 0.00 4.63
996 1340 0.458543 CAATCCACACGAGTCGAGGG 60.459 60.000 21.50 13.08 0.00 4.30
997 1341 1.605058 AATCCACACGAGTCGAGGGG 61.605 60.000 23.57 23.57 42.10 4.79
1000 1344 2.915659 ACACGAGTCGAGGGGCAA 60.916 61.111 21.50 0.00 0.00 4.52
1001 1345 2.283529 ACACGAGTCGAGGGGCAAT 61.284 57.895 21.50 0.00 0.00 3.56
1002 1346 1.811266 CACGAGTCGAGGGGCAATG 60.811 63.158 21.50 0.00 0.00 2.82
1004 1348 2.514824 GAGTCGAGGGGCAATGGC 60.515 66.667 0.00 0.00 40.13 4.40
1050 1417 2.436646 CCTGCCGGTGCGAAGAAT 60.437 61.111 1.90 0.00 41.78 2.40
1191 1558 2.032620 GAGGAGTGGCTCGAGGATAAA 58.967 52.381 15.58 0.00 0.00 1.40
1393 3788 4.704103 AGCGAGGCCCCACTCTCA 62.704 66.667 0.00 0.00 35.33 3.27
1428 3823 0.739561 ACAGCGAGTACGATCTTCCC 59.260 55.000 0.00 0.00 42.66 3.97
1479 3874 3.077359 GGTGGATCTGTGAAGGAAACTG 58.923 50.000 0.00 0.00 42.68 3.16
1480 3875 2.485814 GTGGATCTGTGAAGGAAACTGC 59.514 50.000 0.00 0.00 42.68 4.40
1481 3876 2.373169 TGGATCTGTGAAGGAAACTGCT 59.627 45.455 0.00 0.00 42.68 4.24
1482 3877 2.746362 GGATCTGTGAAGGAAACTGCTG 59.254 50.000 0.00 0.00 42.68 4.41
1483 3878 3.406764 GATCTGTGAAGGAAACTGCTGT 58.593 45.455 0.00 0.00 42.68 4.40
1527 3922 8.634335 TGAATTGAATCCAACTGACAAGATTA 57.366 30.769 0.00 0.00 34.72 1.75
1535 3930 5.347635 TCCAACTGACAAGATTAATTCGTCG 59.652 40.000 0.00 0.00 0.00 5.12
1536 3931 5.120208 CCAACTGACAAGATTAATTCGTCGT 59.880 40.000 0.00 0.00 0.00 4.34
1538 3933 6.780706 ACTGACAAGATTAATTCGTCGTTT 57.219 33.333 0.00 0.00 0.00 3.60
1539 3934 6.818416 ACTGACAAGATTAATTCGTCGTTTC 58.182 36.000 0.00 0.00 0.00 2.78
1541 3936 7.170998 ACTGACAAGATTAATTCGTCGTTTCTT 59.829 33.333 0.00 0.00 0.00 2.52
1544 3939 6.204108 ACAAGATTAATTCGTCGTTTCTTGGT 59.796 34.615 12.70 0.00 41.64 3.67
1546 3941 4.996062 TTAATTCGTCGTTTCTTGGTCC 57.004 40.909 0.00 0.00 0.00 4.46
1547 3942 2.536761 ATTCGTCGTTTCTTGGTCCA 57.463 45.000 0.00 0.00 0.00 4.02
1548 3943 2.536761 TTCGTCGTTTCTTGGTCCAT 57.463 45.000 0.00 0.00 0.00 3.41
1549 3944 3.663995 TTCGTCGTTTCTTGGTCCATA 57.336 42.857 0.00 0.00 0.00 2.74
1550 3945 3.880047 TCGTCGTTTCTTGGTCCATAT 57.120 42.857 0.00 0.00 0.00 1.78
1555 3950 7.088272 TCGTCGTTTCTTGGTCCATATATATG 58.912 38.462 14.78 14.78 0.00 1.78
1567 3962 8.971073 TGGTCCATATATATGTCTGTGTATCTG 58.029 37.037 19.11 2.39 31.82 2.90
1654 4204 5.703592 TGTTACTGAACCATCACCAATGTAC 59.296 40.000 0.00 0.00 34.38 2.90
1701 4265 6.421377 TCGTGTCTGGTGATCAATTTATTG 57.579 37.500 0.00 0.00 39.10 1.90
1705 4269 7.246311 GTGTCTGGTGATCAATTTATTGTCTG 58.754 38.462 0.00 0.00 38.84 3.51
1716 4280 6.209192 TCAATTTATTGTCTGTTGGCATGTCT 59.791 34.615 0.00 0.00 38.84 3.41
1723 4287 5.178061 TGTCTGTTGGCATGTCTAAGTATG 58.822 41.667 0.00 0.00 0.00 2.39
1794 4358 2.196245 GGCGGCTGGGAATCCAATC 61.196 63.158 0.00 0.00 43.51 2.67
1798 4362 2.196245 GCTGGGAATCCAATCGCCC 61.196 63.158 0.09 0.00 43.51 6.13
1799 4363 1.529244 CTGGGAATCCAATCGCCCC 60.529 63.158 0.09 0.00 43.51 5.80
1800 4364 2.283143 CTGGGAATCCAATCGCCCCA 62.283 60.000 0.09 0.00 43.51 4.96
1801 4365 1.828224 GGGAATCCAATCGCCCCAC 60.828 63.158 0.09 0.00 37.04 4.61
1803 4367 2.124320 AATCCAATCGCCCCACGG 60.124 61.111 0.00 0.00 43.89 4.94
1823 4387 0.382636 CGAAAATATCGCCGGTTCGC 60.383 55.000 1.90 0.00 45.89 4.70
1824 4388 0.041576 GAAAATATCGCCGGTTCGCC 60.042 55.000 1.90 0.00 0.00 5.54
1825 4389 1.441732 AAAATATCGCCGGTTCGCCC 61.442 55.000 1.90 0.00 0.00 6.13
1846 4410 3.178539 AGCGGCGCTTTTTCTAGC 58.821 55.556 31.35 0.00 33.89 3.42
1847 4411 2.100410 GCGGCGCTTTTTCTAGCC 59.900 61.111 26.86 0.00 45.67 3.93
1848 4412 2.791927 CGGCGCTTTTTCTAGCCC 59.208 61.111 7.64 0.00 46.36 5.19
1849 4413 2.761195 CGGCGCTTTTTCTAGCCCC 61.761 63.158 7.64 0.00 46.36 5.80
1853 4417 1.032114 CGCTTTTTCTAGCCCCTGGG 61.032 60.000 5.50 5.50 37.90 4.45
1872 4436 4.327885 CCGAACGGCTAGAGATGC 57.672 61.111 0.00 0.00 0.00 3.91
1873 4437 1.736586 CCGAACGGCTAGAGATGCT 59.263 57.895 0.00 0.00 0.00 3.79
1877 4640 2.290916 CGAACGGCTAGAGATGCTCTTA 59.709 50.000 1.88 0.00 41.50 2.10
1880 4643 3.292460 ACGGCTAGAGATGCTCTTACTT 58.708 45.455 1.88 0.00 41.50 2.24
1903 4666 9.990360 ACTTCTCTTCTTTTTAACTTCTAGGAG 57.010 33.333 0.00 0.00 0.00 3.69
1905 4668 9.765795 TTCTCTTCTTTTTAACTTCTAGGAGTG 57.234 33.333 3.86 0.00 0.00 3.51
1906 4669 9.144298 TCTCTTCTTTTTAACTTCTAGGAGTGA 57.856 33.333 3.86 0.00 0.00 3.41
1907 4670 9.936759 CTCTTCTTTTTAACTTCTAGGAGTGAT 57.063 33.333 3.86 0.00 0.00 3.06
1920 4683 9.930693 CTTCTAGGAGTGATACAAGTTAAACTT 57.069 33.333 0.00 0.00 39.39 2.66
1954 4717 5.671493 TGTAAGCTTAATCTACTTCAGGCC 58.329 41.667 7.99 0.00 0.00 5.19
1955 4718 4.844349 AAGCTTAATCTACTTCAGGCCA 57.156 40.909 5.01 0.00 0.00 5.36
1956 4719 5.379706 AAGCTTAATCTACTTCAGGCCAT 57.620 39.130 5.01 0.00 0.00 4.40
1993 5144 9.802039 TGGAGTTATAATTTGTTTAGTCCAGTT 57.198 29.630 0.00 0.00 0.00 3.16
2000 5151 7.839680 AATTTGTTTAGTCCAGTTCCTGATT 57.160 32.000 0.00 0.00 32.44 2.57
2001 5152 6.877611 TTTGTTTAGTCCAGTTCCTGATTC 57.122 37.500 0.00 0.00 32.44 2.52
2003 5154 6.187727 TGTTTAGTCCAGTTCCTGATTCTT 57.812 37.500 0.00 0.00 32.44 2.52
2004 5155 6.601332 TGTTTAGTCCAGTTCCTGATTCTTT 58.399 36.000 0.00 0.00 32.44 2.52
2005 5156 7.060421 TGTTTAGTCCAGTTCCTGATTCTTTT 58.940 34.615 0.00 0.00 32.44 2.27
2006 5157 7.559897 TGTTTAGTCCAGTTCCTGATTCTTTTT 59.440 33.333 0.00 0.00 32.44 1.94
2032 5183 8.718102 TTTTCCTTATATATATGGAAGCGAGC 57.282 34.615 26.76 0.00 43.29 5.03
2033 5184 7.418337 TTCCTTATATATATGGAAGCGAGCA 57.582 36.000 25.56 10.63 39.94 4.26
2034 5185 6.806751 TCCTTATATATATGGAAGCGAGCAC 58.193 40.000 19.99 0.00 34.70 4.40
2035 5186 6.379988 TCCTTATATATATGGAAGCGAGCACA 59.620 38.462 19.99 0.04 34.70 4.57
2036 5187 7.069950 TCCTTATATATATGGAAGCGAGCACAT 59.930 37.037 19.99 1.90 34.70 3.21
2037 5188 7.170489 CCTTATATATATGGAAGCGAGCACATG 59.830 40.741 16.34 0.00 31.18 3.21
2038 5189 2.627515 ATATGGAAGCGAGCACATGT 57.372 45.000 0.00 0.00 0.00 3.21
2040 5191 0.806868 ATGGAAGCGAGCACATGTTG 59.193 50.000 0.00 0.00 0.00 3.33
2041 5192 0.534877 TGGAAGCGAGCACATGTTGT 60.535 50.000 0.00 0.00 0.00 3.32
2042 5193 0.593128 GGAAGCGAGCACATGTTGTT 59.407 50.000 0.00 0.00 0.00 2.83
2043 5194 1.001378 GGAAGCGAGCACATGTTGTTT 60.001 47.619 0.00 0.00 0.00 2.83
2044 5195 2.543653 GGAAGCGAGCACATGTTGTTTT 60.544 45.455 0.00 0.00 0.00 2.43
2045 5196 2.405892 AGCGAGCACATGTTGTTTTC 57.594 45.000 0.00 0.00 0.00 2.29
2046 5197 1.949525 AGCGAGCACATGTTGTTTTCT 59.050 42.857 0.00 0.00 0.00 2.52
2047 5198 2.358898 AGCGAGCACATGTTGTTTTCTT 59.641 40.909 0.00 0.00 0.00 2.52
2048 5199 2.468777 GCGAGCACATGTTGTTTTCTTG 59.531 45.455 0.00 0.00 0.00 3.02
2049 5200 3.791789 GCGAGCACATGTTGTTTTCTTGA 60.792 43.478 0.00 0.00 0.00 3.02
2050 5201 3.725740 CGAGCACATGTTGTTTTCTTGAC 59.274 43.478 0.00 0.00 0.00 3.18
2051 5202 4.671377 GAGCACATGTTGTTTTCTTGACA 58.329 39.130 0.00 0.00 0.00 3.58
2052 5203 5.070770 AGCACATGTTGTTTTCTTGACAA 57.929 34.783 0.00 0.00 34.83 3.18
2053 5204 5.104374 AGCACATGTTGTTTTCTTGACAAG 58.896 37.500 9.03 9.03 37.65 3.16
2054 5205 5.101628 GCACATGTTGTTTTCTTGACAAGA 58.898 37.500 13.99 13.99 37.65 3.02
2055 5206 5.750067 GCACATGTTGTTTTCTTGACAAGAT 59.250 36.000 18.38 0.00 40.37 2.40
2056 5207 6.256321 GCACATGTTGTTTTCTTGACAAGATT 59.744 34.615 18.38 0.00 38.47 2.40
2057 5208 7.614908 CACATGTTGTTTTCTTGACAAGATTG 58.385 34.615 18.38 8.77 38.47 2.67
2058 5209 7.488792 CACATGTTGTTTTCTTGACAAGATTGA 59.511 33.333 18.38 1.28 38.47 2.57
2059 5210 7.703621 ACATGTTGTTTTCTTGACAAGATTGAG 59.296 33.333 18.38 5.33 38.47 3.02
2060 5211 7.156876 TGTTGTTTTCTTGACAAGATTGAGT 57.843 32.000 18.38 0.00 37.65 3.41
2061 5212 7.028962 TGTTGTTTTCTTGACAAGATTGAGTG 58.971 34.615 18.38 0.00 37.65 3.51
2062 5213 6.135290 TGTTTTCTTGACAAGATTGAGTGG 57.865 37.500 18.38 0.00 37.38 4.00
2063 5214 4.836125 TTTCTTGACAAGATTGAGTGGC 57.164 40.909 18.38 0.00 37.38 5.01
2064 5215 3.777106 TCTTGACAAGATTGAGTGGCT 57.223 42.857 13.99 0.00 31.20 4.75
2065 5216 3.405831 TCTTGACAAGATTGAGTGGCTG 58.594 45.455 13.99 0.00 31.20 4.85
2066 5217 2.189594 TGACAAGATTGAGTGGCTGG 57.810 50.000 0.00 0.00 0.00 4.85
2067 5218 1.699083 TGACAAGATTGAGTGGCTGGA 59.301 47.619 0.00 0.00 0.00 3.86
2068 5219 2.079925 GACAAGATTGAGTGGCTGGAC 58.920 52.381 0.00 0.00 0.00 4.02
2069 5220 1.701847 ACAAGATTGAGTGGCTGGACT 59.298 47.619 0.00 0.00 0.00 3.85
2070 5221 2.107204 ACAAGATTGAGTGGCTGGACTT 59.893 45.455 0.00 0.00 0.00 3.01
2071 5222 3.152341 CAAGATTGAGTGGCTGGACTTT 58.848 45.455 0.00 0.00 0.00 2.66
2072 5223 4.202461 ACAAGATTGAGTGGCTGGACTTTA 60.202 41.667 0.00 0.00 0.00 1.85
2073 5224 4.640771 AGATTGAGTGGCTGGACTTTAA 57.359 40.909 0.00 0.00 0.00 1.52
2074 5225 4.985538 AGATTGAGTGGCTGGACTTTAAA 58.014 39.130 0.00 0.00 0.00 1.52
2075 5226 5.574188 AGATTGAGTGGCTGGACTTTAAAT 58.426 37.500 0.00 0.00 0.00 1.40
2076 5227 6.012745 AGATTGAGTGGCTGGACTTTAAATT 58.987 36.000 0.00 0.00 0.00 1.82
2077 5228 5.705609 TTGAGTGGCTGGACTTTAAATTC 57.294 39.130 0.00 0.00 0.00 2.17
2078 5229 3.751175 TGAGTGGCTGGACTTTAAATTCG 59.249 43.478 0.05 0.00 0.00 3.34
2079 5230 2.488153 AGTGGCTGGACTTTAAATTCGC 59.512 45.455 0.05 0.00 0.00 4.70
2080 5231 2.488153 GTGGCTGGACTTTAAATTCGCT 59.512 45.455 0.05 0.00 0.00 4.93
2081 5232 2.487762 TGGCTGGACTTTAAATTCGCTG 59.512 45.455 0.05 0.18 0.00 5.18
2082 5233 2.519963 GCTGGACTTTAAATTCGCTGC 58.480 47.619 0.05 5.31 0.00 5.25
2083 5234 2.095263 GCTGGACTTTAAATTCGCTGCA 60.095 45.455 0.00 0.00 0.00 4.41
2084 5235 3.428045 GCTGGACTTTAAATTCGCTGCAT 60.428 43.478 0.00 0.00 0.00 3.96
2085 5236 4.095410 TGGACTTTAAATTCGCTGCATG 57.905 40.909 0.00 0.00 0.00 4.06
2086 5237 3.505680 TGGACTTTAAATTCGCTGCATGT 59.494 39.130 0.00 0.00 0.00 3.21
2087 5238 4.022416 TGGACTTTAAATTCGCTGCATGTT 60.022 37.500 0.00 0.00 0.00 2.71
2088 5239 5.182190 TGGACTTTAAATTCGCTGCATGTTA 59.818 36.000 0.00 0.00 0.00 2.41
2089 5240 5.739161 GGACTTTAAATTCGCTGCATGTTAG 59.261 40.000 0.00 0.00 0.00 2.34
2090 5241 5.640732 ACTTTAAATTCGCTGCATGTTAGG 58.359 37.500 0.00 0.00 0.00 2.69
2091 5242 2.566952 AAATTCGCTGCATGTTAGGC 57.433 45.000 0.00 0.00 0.00 3.93
2092 5243 1.755179 AATTCGCTGCATGTTAGGCT 58.245 45.000 0.00 0.00 0.00 4.58
2093 5244 1.755179 ATTCGCTGCATGTTAGGCTT 58.245 45.000 0.00 0.00 0.00 4.35
2094 5245 1.533625 TTCGCTGCATGTTAGGCTTT 58.466 45.000 0.00 0.00 0.00 3.51
2095 5246 0.804364 TCGCTGCATGTTAGGCTTTG 59.196 50.000 0.00 0.00 0.00 2.77
2096 5247 0.523072 CGCTGCATGTTAGGCTTTGT 59.477 50.000 0.00 0.00 0.00 2.83
2097 5248 1.466360 CGCTGCATGTTAGGCTTTGTC 60.466 52.381 0.00 0.00 0.00 3.18
2098 5249 1.541147 GCTGCATGTTAGGCTTTGTCA 59.459 47.619 0.00 0.00 0.00 3.58
2099 5250 2.165030 GCTGCATGTTAGGCTTTGTCAT 59.835 45.455 0.00 0.00 0.00 3.06
2100 5251 3.378112 GCTGCATGTTAGGCTTTGTCATA 59.622 43.478 0.00 0.00 0.00 2.15
2101 5252 4.497006 GCTGCATGTTAGGCTTTGTCATAG 60.497 45.833 0.00 0.00 0.00 2.23
2102 5253 4.588899 TGCATGTTAGGCTTTGTCATAGT 58.411 39.130 0.00 0.00 0.00 2.12
2103 5254 5.739959 TGCATGTTAGGCTTTGTCATAGTA 58.260 37.500 0.00 0.00 0.00 1.82
2104 5255 5.584649 TGCATGTTAGGCTTTGTCATAGTAC 59.415 40.000 0.00 0.00 0.00 2.73
2105 5256 5.817816 GCATGTTAGGCTTTGTCATAGTACT 59.182 40.000 0.00 0.00 0.00 2.73
2106 5257 6.984474 GCATGTTAGGCTTTGTCATAGTACTA 59.016 38.462 4.77 4.77 0.00 1.82
2107 5258 7.494625 GCATGTTAGGCTTTGTCATAGTACTAA 59.505 37.037 6.70 0.00 0.00 2.24
2108 5259 9.547753 CATGTTAGGCTTTGTCATAGTACTAAT 57.452 33.333 6.70 0.00 0.00 1.73
2110 5261 9.953565 TGTTAGGCTTTGTCATAGTACTAATTT 57.046 29.630 6.70 0.00 0.00 1.82
2114 5265 9.167311 AGGCTTTGTCATAGTACTAATTTCTTG 57.833 33.333 6.70 0.00 0.00 3.02
2115 5266 9.162764 GGCTTTGTCATAGTACTAATTTCTTGA 57.837 33.333 6.70 2.12 0.00 3.02
2116 5267 9.974750 GCTTTGTCATAGTACTAATTTCTTGAC 57.025 33.333 18.75 18.75 34.33 3.18
2119 5270 9.653287 TTGTCATAGTACTAATTTCTTGACCAG 57.347 33.333 21.10 0.00 33.12 4.00
2120 5271 7.764443 TGTCATAGTACTAATTTCTTGACCAGC 59.236 37.037 21.10 5.49 33.12 4.85
2121 5272 7.982354 GTCATAGTACTAATTTCTTGACCAGCT 59.018 37.037 16.26 0.00 0.00 4.24
2122 5273 8.540388 TCATAGTACTAATTTCTTGACCAGCTT 58.460 33.333 6.70 0.00 0.00 3.74
2123 5274 9.817809 CATAGTACTAATTTCTTGACCAGCTTA 57.182 33.333 6.70 0.00 0.00 3.09
2129 5280 9.740710 ACTAATTTCTTGACCAGCTTAATAGTT 57.259 29.630 0.00 0.00 0.00 2.24
2133 5284 9.696917 ATTTCTTGACCAGCTTAATAGTTTTTG 57.303 29.630 0.00 0.00 0.00 2.44
2134 5285 7.817418 TCTTGACCAGCTTAATAGTTTTTGT 57.183 32.000 0.00 0.00 0.00 2.83
2135 5286 7.648142 TCTTGACCAGCTTAATAGTTTTTGTG 58.352 34.615 0.00 0.00 0.00 3.33
2136 5287 6.325919 TGACCAGCTTAATAGTTTTTGTGG 57.674 37.500 0.00 0.00 0.00 4.17
2137 5288 5.830991 TGACCAGCTTAATAGTTTTTGTGGT 59.169 36.000 0.00 0.00 38.48 4.16
2138 5289 6.999272 TGACCAGCTTAATAGTTTTTGTGGTA 59.001 34.615 0.00 0.00 35.91 3.25
2139 5290 7.174253 TGACCAGCTTAATAGTTTTTGTGGTAG 59.826 37.037 0.00 0.00 35.91 3.18
2140 5291 6.433093 ACCAGCTTAATAGTTTTTGTGGTAGG 59.567 38.462 0.00 0.00 33.99 3.18
2141 5292 6.657541 CCAGCTTAATAGTTTTTGTGGTAGGA 59.342 38.462 0.00 0.00 0.00 2.94
2142 5293 7.339466 CCAGCTTAATAGTTTTTGTGGTAGGAT 59.661 37.037 0.00 0.00 0.00 3.24
2143 5294 8.398665 CAGCTTAATAGTTTTTGTGGTAGGATC 58.601 37.037 0.00 0.00 0.00 3.36
2144 5295 7.280205 AGCTTAATAGTTTTTGTGGTAGGATCG 59.720 37.037 0.00 0.00 0.00 3.69
2145 5296 7.065443 GCTTAATAGTTTTTGTGGTAGGATCGT 59.935 37.037 0.00 0.00 0.00 3.73
2146 5297 9.590451 CTTAATAGTTTTTGTGGTAGGATCGTA 57.410 33.333 0.00 0.00 0.00 3.43
2147 5298 9.590451 TTAATAGTTTTTGTGGTAGGATCGTAG 57.410 33.333 0.00 0.00 0.00 3.51
2148 5299 5.479124 AGTTTTTGTGGTAGGATCGTAGT 57.521 39.130 0.00 0.00 0.00 2.73
2149 5300 5.476614 AGTTTTTGTGGTAGGATCGTAGTC 58.523 41.667 0.00 0.00 0.00 2.59
2150 5301 5.011329 AGTTTTTGTGGTAGGATCGTAGTCA 59.989 40.000 0.00 0.00 0.00 3.41
2151 5302 5.670792 TTTTGTGGTAGGATCGTAGTCAT 57.329 39.130 0.00 0.00 0.00 3.06
2152 5303 6.778834 TTTTGTGGTAGGATCGTAGTCATA 57.221 37.500 0.00 0.00 0.00 2.15
2153 5304 6.387041 TTTGTGGTAGGATCGTAGTCATAG 57.613 41.667 0.00 0.00 0.00 2.23
2154 5305 3.819337 TGTGGTAGGATCGTAGTCATAGC 59.181 47.826 0.00 0.00 34.51 2.97
2155 5306 4.073549 GTGGTAGGATCGTAGTCATAGCT 58.926 47.826 0.00 0.00 34.87 3.32
2156 5307 5.221783 TGTGGTAGGATCGTAGTCATAGCTA 60.222 44.000 0.00 0.00 34.87 3.32
2157 5308 5.704515 GTGGTAGGATCGTAGTCATAGCTAA 59.295 44.000 0.00 0.00 34.87 3.09
2158 5309 6.374894 GTGGTAGGATCGTAGTCATAGCTAAT 59.625 42.308 0.00 0.00 34.87 1.73
2159 5310 6.946583 TGGTAGGATCGTAGTCATAGCTAATT 59.053 38.462 0.00 0.00 34.87 1.40
2160 5311 8.105197 TGGTAGGATCGTAGTCATAGCTAATTA 58.895 37.037 0.00 0.00 34.87 1.40
2161 5312 8.954350 GGTAGGATCGTAGTCATAGCTAATTAA 58.046 37.037 0.00 0.00 32.09 1.40
2162 5313 9.991388 GTAGGATCGTAGTCATAGCTAATTAAG 57.009 37.037 0.00 0.00 0.00 1.85
2163 5314 8.865420 AGGATCGTAGTCATAGCTAATTAAGA 57.135 34.615 0.00 0.00 0.00 2.10
2164 5315 8.952278 AGGATCGTAGTCATAGCTAATTAAGAG 58.048 37.037 0.00 0.00 0.00 2.85
2165 5316 7.698970 GGATCGTAGTCATAGCTAATTAAGAGC 59.301 40.741 0.00 4.35 40.42 4.09
2166 5317 7.506328 TCGTAGTCATAGCTAATTAAGAGCA 57.494 36.000 13.13 2.24 42.69 4.26
2167 5318 7.937649 TCGTAGTCATAGCTAATTAAGAGCAA 58.062 34.615 13.13 0.00 42.69 3.91
2168 5319 8.076781 TCGTAGTCATAGCTAATTAAGAGCAAG 58.923 37.037 13.13 4.36 42.69 4.01
2169 5320 7.863375 CGTAGTCATAGCTAATTAAGAGCAAGT 59.137 37.037 13.13 3.55 42.69 3.16
2172 5323 8.696374 AGTCATAGCTAATTAAGAGCAAGTACA 58.304 33.333 13.13 0.00 42.69 2.90
2173 5324 9.314321 GTCATAGCTAATTAAGAGCAAGTACAA 57.686 33.333 13.13 0.00 42.69 2.41
2182 5333 9.686683 AATTAAGAGCAAGTACAATAGAATGGT 57.313 29.630 0.00 0.00 0.00 3.55
2186 5337 9.988815 AAGAGCAAGTACAATAGAATGGTATAG 57.011 33.333 0.00 0.00 0.00 1.31
2187 5338 8.589338 AGAGCAAGTACAATAGAATGGTATAGG 58.411 37.037 0.00 0.00 0.00 2.57
2188 5339 7.162082 AGCAAGTACAATAGAATGGTATAGGC 58.838 38.462 0.00 0.00 0.00 3.93
2189 5340 6.090898 GCAAGTACAATAGAATGGTATAGGCG 59.909 42.308 0.00 0.00 0.00 5.52
2190 5341 6.282199 AGTACAATAGAATGGTATAGGCGG 57.718 41.667 0.00 0.00 0.00 6.13
2191 5342 4.553330 ACAATAGAATGGTATAGGCGGG 57.447 45.455 0.00 0.00 0.00 6.13
2192 5343 3.270877 CAATAGAATGGTATAGGCGGGC 58.729 50.000 0.00 0.00 0.00 6.13
2193 5344 2.320681 TAGAATGGTATAGGCGGGCT 57.679 50.000 9.68 9.68 0.00 5.19
2194 5345 0.687354 AGAATGGTATAGGCGGGCTG 59.313 55.000 15.11 0.00 0.00 4.85
2195 5346 0.396811 GAATGGTATAGGCGGGCTGT 59.603 55.000 15.11 10.43 0.00 4.40
2196 5347 1.621814 GAATGGTATAGGCGGGCTGTA 59.378 52.381 15.11 9.28 0.00 2.74
2197 5348 1.724545 ATGGTATAGGCGGGCTGTAA 58.275 50.000 15.11 0.00 0.00 2.41
2198 5349 1.045407 TGGTATAGGCGGGCTGTAAG 58.955 55.000 15.11 0.00 0.00 2.34
2199 5350 1.335145 GGTATAGGCGGGCTGTAAGA 58.665 55.000 15.11 0.00 34.07 2.10
2200 5351 1.000618 GGTATAGGCGGGCTGTAAGAC 59.999 57.143 15.11 1.57 46.31 3.01
2201 5352 1.962100 GTATAGGCGGGCTGTAAGACT 59.038 52.381 15.11 0.00 46.21 3.24
2202 5353 1.497161 ATAGGCGGGCTGTAAGACTT 58.503 50.000 15.11 0.00 46.21 3.01
2203 5354 1.272807 TAGGCGGGCTGTAAGACTTT 58.727 50.000 15.11 0.00 46.21 2.66
2204 5355 1.272807 AGGCGGGCTGTAAGACTTTA 58.727 50.000 2.09 0.00 46.21 1.85
2205 5356 1.626825 AGGCGGGCTGTAAGACTTTAA 59.373 47.619 2.09 0.00 46.21 1.52
2206 5357 2.039348 AGGCGGGCTGTAAGACTTTAAA 59.961 45.455 2.09 0.00 46.21 1.52
2207 5358 3.014623 GGCGGGCTGTAAGACTTTAAAT 58.985 45.455 0.00 0.00 46.21 1.40
2208 5359 4.080751 AGGCGGGCTGTAAGACTTTAAATA 60.081 41.667 2.09 0.00 46.21 1.40
2209 5360 4.820173 GGCGGGCTGTAAGACTTTAAATAT 59.180 41.667 0.00 0.00 46.21 1.28
2210 5361 5.298527 GGCGGGCTGTAAGACTTTAAATATT 59.701 40.000 0.00 0.00 46.21 1.28
2211 5362 6.484308 GGCGGGCTGTAAGACTTTAAATATTA 59.516 38.462 0.00 0.00 46.21 0.98
2212 5363 7.174426 GGCGGGCTGTAAGACTTTAAATATTAT 59.826 37.037 0.00 0.00 46.21 1.28
2213 5364 9.211485 GCGGGCTGTAAGACTTTAAATATTATA 57.789 33.333 0.00 0.00 46.21 0.98
2244 5395 6.025749 TGAGTTAGCGAAGAAAGAAGATGA 57.974 37.500 0.00 0.00 0.00 2.92
2246 5397 6.929049 TGAGTTAGCGAAGAAAGAAGATGAAA 59.071 34.615 0.00 0.00 0.00 2.69
2249 5400 7.330700 AGTTAGCGAAGAAAGAAGATGAAAGAG 59.669 37.037 0.00 0.00 0.00 2.85
2250 5401 5.788450 AGCGAAGAAAGAAGATGAAAGAGA 58.212 37.500 0.00 0.00 0.00 3.10
2254 5405 7.411804 GCGAAGAAAGAAGATGAAAGAGAAGAG 60.412 40.741 0.00 0.00 0.00 2.85
2255 5406 7.812191 CGAAGAAAGAAGATGAAAGAGAAGAGA 59.188 37.037 0.00 0.00 0.00 3.10
2258 5409 7.603784 AGAAAGAAGATGAAAGAGAAGAGAAGC 59.396 37.037 0.00 0.00 0.00 3.86
2260 5411 4.122143 AGATGAAAGAGAAGAGAAGCGG 57.878 45.455 0.00 0.00 0.00 5.52
2262 5413 1.971357 TGAAAGAGAAGAGAAGCGGGT 59.029 47.619 0.00 0.00 0.00 5.28
2263 5414 2.028930 TGAAAGAGAAGAGAAGCGGGTC 60.029 50.000 0.00 0.00 0.00 4.46
2264 5415 1.633774 AAGAGAAGAGAAGCGGGTCA 58.366 50.000 0.00 0.00 0.00 4.02
2266 5417 3.019799 AGAGAAGAGAAGCGGGTCATA 57.980 47.619 0.00 0.00 0.00 2.15
2267 5418 2.955660 AGAGAAGAGAAGCGGGTCATAG 59.044 50.000 0.00 0.00 0.00 2.23
2268 5419 1.410882 AGAAGAGAAGCGGGTCATAGC 59.589 52.381 0.00 0.00 0.00 2.97
2269 5420 1.410882 GAAGAGAAGCGGGTCATAGCT 59.589 52.381 0.00 0.00 46.97 3.32
2270 5421 2.366640 AGAGAAGCGGGTCATAGCTA 57.633 50.000 0.00 0.00 43.78 3.32
2271 5422 1.957877 AGAGAAGCGGGTCATAGCTAC 59.042 52.381 0.00 0.00 43.78 3.58
2273 5424 1.683917 AGAAGCGGGTCATAGCTACAG 59.316 52.381 0.00 0.00 43.78 2.74
2274 5425 0.105039 AAGCGGGTCATAGCTACAGC 59.895 55.000 0.00 0.00 43.78 4.40
2276 5427 0.876342 GCGGGTCATAGCTACAGCAC 60.876 60.000 3.70 0.00 45.16 4.40
2278 5429 0.460311 GGGTCATAGCTACAGCACGT 59.540 55.000 3.70 0.00 45.16 4.49
2279 5430 1.134788 GGGTCATAGCTACAGCACGTT 60.135 52.381 3.70 0.00 45.16 3.99
2280 5431 1.927174 GGTCATAGCTACAGCACGTTG 59.073 52.381 3.70 0.00 45.16 4.10
2283 5448 2.492088 TCATAGCTACAGCACGTTGTCT 59.508 45.455 3.70 0.00 45.16 3.41
2300 5465 2.837591 TGTCTACATTGGGAGCTAAGCA 59.162 45.455 0.00 0.00 0.00 3.91
2317 5482 4.978083 AAGCATTCTTAGCATCAACCAG 57.022 40.909 0.00 0.00 0.00 4.00
2323 5488 3.585862 TCTTAGCATCAACCAGACGTTC 58.414 45.455 0.00 0.00 29.93 3.95
2330 5495 2.036387 TCAACCAGACGTTCTTCTCCA 58.964 47.619 0.00 0.00 29.93 3.86
2334 5499 2.557490 ACCAGACGTTCTTCTCCACTAC 59.443 50.000 0.00 0.00 0.00 2.73
2358 5523 1.662044 CCCACAAGCACTTCCAAGC 59.338 57.895 0.00 0.00 0.00 4.01
2377 5542 1.141234 CGACTAGGGTTTCCTCGCC 59.859 63.158 0.00 0.00 43.66 5.54
2384 5549 2.347490 GTTTCCTCGCCTCCTGCA 59.653 61.111 0.00 0.00 41.33 4.41
2386 5551 1.913262 TTTCCTCGCCTCCTGCAGA 60.913 57.895 17.39 0.00 41.33 4.26
2387 5552 2.172483 TTTCCTCGCCTCCTGCAGAC 62.172 60.000 17.39 0.25 41.33 3.51
2388 5553 3.385384 CCTCGCCTCCTGCAGACA 61.385 66.667 17.39 0.00 41.33 3.41
2389 5554 2.183811 CTCGCCTCCTGCAGACAG 59.816 66.667 17.39 10.50 44.05 3.51
2397 5562 2.126307 CTGCAGACAGGGACGTCG 60.126 66.667 8.42 0.00 40.98 5.12
2400 5565 4.778415 CAGACAGGGACGTCGCCG 62.778 72.222 26.94 20.41 40.98 6.46
2416 5581 2.202440 CGCCGCCGATATACCTCG 60.202 66.667 0.00 0.00 38.37 4.63
2418 5583 1.154073 GCCGCCGATATACCTCGTC 60.154 63.158 0.00 0.00 36.93 4.20
2422 5587 1.135746 CGCCGATATACCTCGTCTTCC 60.136 57.143 0.00 0.00 36.93 3.46
2423 5588 1.884579 GCCGATATACCTCGTCTTCCA 59.115 52.381 0.00 0.00 36.93 3.53
2435 5600 2.365617 TCGTCTTCCATGGCCTTAGATC 59.634 50.000 6.96 2.28 0.00 2.75
2438 5603 3.117888 GTCTTCCATGGCCTTAGATCCAA 60.118 47.826 6.96 0.00 35.75 3.53
2440 5605 2.775418 TCCATGGCCTTAGATCCAAGA 58.225 47.619 6.96 0.00 35.75 3.02
2451 5616 1.765314 AGATCCAAGAAGGCGCTATGT 59.235 47.619 7.64 0.00 37.29 2.29
2465 5630 1.271379 GCTATGTATCCCGGCCATTGT 60.271 52.381 2.24 0.00 0.00 2.71
2466 5631 2.814097 GCTATGTATCCCGGCCATTGTT 60.814 50.000 2.24 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.262640 TTCGGACCTTGGGCCTCTAC 61.263 60.000 10.21 0.00 0.00 2.59
19 20 4.332828 ACCCCTTGTAATTTCTCTTTCGG 58.667 43.478 0.00 0.00 0.00 4.30
76 77 3.007398 GCTGGAGGGGACTATGTCATTAG 59.993 52.174 0.00 0.00 44.43 1.73
208 210 2.288886 GGTATGGTTGATCCTCCTACGC 60.289 54.545 5.16 0.00 37.07 4.42
335 338 5.595133 ACCGGTTGAAGGTTTCATAAAAGAA 59.405 36.000 0.00 0.00 39.29 2.52
336 339 5.009210 CACCGGTTGAAGGTTTCATAAAAGA 59.991 40.000 2.97 0.00 40.59 2.52
337 340 5.219633 CACCGGTTGAAGGTTTCATAAAAG 58.780 41.667 2.97 0.00 40.59 2.27
380 383 2.874701 GACAGTTTCAGAGCAAGCTCAA 59.125 45.455 22.68 7.68 44.99 3.02
413 416 3.373439 GTCAACTTCATAGCAGCCAGAAG 59.627 47.826 14.37 14.37 42.32 2.85
415 418 2.302733 TGTCAACTTCATAGCAGCCAGA 59.697 45.455 0.00 0.00 0.00 3.86
416 419 2.417933 GTGTCAACTTCATAGCAGCCAG 59.582 50.000 0.00 0.00 0.00 4.85
417 420 2.224499 TGTGTCAACTTCATAGCAGCCA 60.224 45.455 0.00 0.00 0.00 4.75
419 422 2.807967 TGTGTGTCAACTTCATAGCAGC 59.192 45.455 0.00 0.00 0.00 5.25
500 525 7.332678 CAGTTACTATGTGGGTACTTTGGTTAC 59.667 40.741 0.00 0.00 0.00 2.50
502 527 6.183361 ACAGTTACTATGTGGGTACTTTGGTT 60.183 38.462 0.00 0.00 0.00 3.67
509 534 6.875076 AGAATGACAGTTACTATGTGGGTAC 58.125 40.000 0.00 0.00 0.00 3.34
511 536 6.173339 CAAGAATGACAGTTACTATGTGGGT 58.827 40.000 0.00 0.00 0.00 4.51
588 929 2.450609 TTGCTACGTCTGAACCTTCC 57.549 50.000 0.00 0.00 0.00 3.46
687 1029 2.115291 GCTCGGGGTGCAAGATTCC 61.115 63.158 0.00 0.00 0.00 3.01
696 1038 0.535102 AGAGTGTTTTGCTCGGGGTG 60.535 55.000 0.00 0.00 37.99 4.61
697 1039 0.182775 AAGAGTGTTTTGCTCGGGGT 59.817 50.000 0.00 0.00 37.99 4.95
747 1091 3.538634 AATTAGCTACCCGTGAAGGAC 57.461 47.619 0.00 0.00 45.00 3.85
758 1102 9.447040 AAAGTGTTTTCTTTCGAAATTAGCTAC 57.553 29.630 11.70 7.54 38.81 3.58
770 1114 7.428282 TCCAAACCAAAAAGTGTTTTCTTTC 57.572 32.000 0.00 0.00 36.75 2.62
774 1118 6.580791 GCTTTTCCAAACCAAAAAGTGTTTTC 59.419 34.615 8.77 0.00 42.05 2.29
798 1142 4.116238 CCTCTCTTCCGTTTTATCTCTGC 58.884 47.826 0.00 0.00 0.00 4.26
811 1155 2.499693 CCACCTCTCTTTCCTCTCTTCC 59.500 54.545 0.00 0.00 0.00 3.46
816 1160 0.912006 GGCCCACCTCTCTTTCCTCT 60.912 60.000 0.00 0.00 0.00 3.69
861 1205 1.372997 CCAACTCTGTCACCGACCG 60.373 63.158 0.00 0.00 0.00 4.79
872 1216 3.846588 AGACATATTCACACCCCAACTCT 59.153 43.478 0.00 0.00 0.00 3.24
883 1227 5.019785 ACGAAACCCCTAGACATATTCAC 57.980 43.478 0.00 0.00 0.00 3.18
884 1228 5.424252 AGAACGAAACCCCTAGACATATTCA 59.576 40.000 0.00 0.00 0.00 2.57
887 1231 4.715297 ACAGAACGAAACCCCTAGACATAT 59.285 41.667 0.00 0.00 0.00 1.78
888 1232 4.091549 ACAGAACGAAACCCCTAGACATA 58.908 43.478 0.00 0.00 0.00 2.29
889 1233 2.904434 ACAGAACGAAACCCCTAGACAT 59.096 45.455 0.00 0.00 0.00 3.06
890 1234 2.322658 ACAGAACGAAACCCCTAGACA 58.677 47.619 0.00 0.00 0.00 3.41
891 1235 3.324117 GAACAGAACGAAACCCCTAGAC 58.676 50.000 0.00 0.00 0.00 2.59
892 1236 2.301009 GGAACAGAACGAAACCCCTAGA 59.699 50.000 0.00 0.00 0.00 2.43
893 1237 2.302157 AGGAACAGAACGAAACCCCTAG 59.698 50.000 0.00 0.00 0.00 3.02
894 1238 2.301009 GAGGAACAGAACGAAACCCCTA 59.699 50.000 0.00 0.00 0.00 3.53
895 1239 1.071857 GAGGAACAGAACGAAACCCCT 59.928 52.381 0.00 0.00 0.00 4.79
896 1240 1.071857 AGAGGAACAGAACGAAACCCC 59.928 52.381 0.00 0.00 0.00 4.95
897 1241 2.037381 AGAGAGGAACAGAACGAAACCC 59.963 50.000 0.00 0.00 0.00 4.11
899 1243 4.022676 AGAGAGAGAGGAACAGAACGAAAC 60.023 45.833 0.00 0.00 0.00 2.78
900 1244 4.145807 AGAGAGAGAGGAACAGAACGAAA 58.854 43.478 0.00 0.00 0.00 3.46
902 1246 3.426787 AGAGAGAGAGGAACAGAACGA 57.573 47.619 0.00 0.00 0.00 3.85
903 1247 8.610248 TTATATAGAGAGAGAGGAACAGAACG 57.390 38.462 0.00 0.00 0.00 3.95
909 1253 7.966204 GCGTGATTTATATAGAGAGAGAGGAAC 59.034 40.741 0.00 0.00 0.00 3.62
910 1254 7.885922 AGCGTGATTTATATAGAGAGAGAGGAA 59.114 37.037 0.00 0.00 0.00 3.36
911 1255 7.398829 AGCGTGATTTATATAGAGAGAGAGGA 58.601 38.462 0.00 0.00 0.00 3.71
912 1256 7.624360 AGCGTGATTTATATAGAGAGAGAGG 57.376 40.000 0.00 0.00 0.00 3.69
913 1257 9.594478 TCTAGCGTGATTTATATAGAGAGAGAG 57.406 37.037 0.00 0.00 0.00 3.20
916 1260 9.036671 CGATCTAGCGTGATTTATATAGAGAGA 57.963 37.037 0.00 0.00 0.00 3.10
917 1261 9.036671 TCGATCTAGCGTGATTTATATAGAGAG 57.963 37.037 0.00 0.00 0.00 3.20
920 1264 8.775527 GGATCGATCTAGCGTGATTTATATAGA 58.224 37.037 23.96 0.00 0.00 1.98
921 1265 8.779303 AGGATCGATCTAGCGTGATTTATATAG 58.221 37.037 23.96 0.00 0.00 1.31
922 1266 8.678593 AGGATCGATCTAGCGTGATTTATATA 57.321 34.615 23.96 0.00 0.00 0.86
923 1267 7.255312 GGAGGATCGATCTAGCGTGATTTATAT 60.255 40.741 23.96 0.00 34.37 0.86
924 1268 6.038382 GGAGGATCGATCTAGCGTGATTTATA 59.962 42.308 23.96 0.00 34.37 0.98
925 1269 5.163602 GGAGGATCGATCTAGCGTGATTTAT 60.164 44.000 23.96 0.00 34.37 1.40
926 1270 4.156190 GGAGGATCGATCTAGCGTGATTTA 59.844 45.833 23.96 0.00 34.37 1.40
927 1271 3.057174 GGAGGATCGATCTAGCGTGATTT 60.057 47.826 23.96 0.00 34.37 2.17
928 1272 2.490115 GGAGGATCGATCTAGCGTGATT 59.510 50.000 23.96 0.52 34.37 2.57
929 1273 2.088423 GGAGGATCGATCTAGCGTGAT 58.912 52.381 23.96 1.74 34.37 3.06
932 1276 1.612199 GGAGGAGGATCGATCTAGCGT 60.612 57.143 23.96 14.55 34.37 5.07
934 1278 1.470051 GGGAGGAGGATCGATCTAGC 58.530 60.000 23.96 13.37 34.37 3.42
935 1279 1.341581 GGGGGAGGAGGATCGATCTAG 60.342 61.905 23.96 0.00 34.37 2.43
938 1282 0.471971 TTGGGGGAGGAGGATCGATC 60.472 60.000 17.36 17.36 34.37 3.69
941 1285 2.444256 GGTTGGGGGAGGAGGATCG 61.444 68.421 0.00 0.00 34.37 3.69
942 1286 2.444256 CGGTTGGGGGAGGAGGATC 61.444 68.421 0.00 0.00 0.00 3.36
946 1290 1.271840 TTGATCGGTTGGGGGAGGAG 61.272 60.000 0.00 0.00 0.00 3.69
947 1291 0.842905 TTTGATCGGTTGGGGGAGGA 60.843 55.000 0.00 0.00 0.00 3.71
948 1292 0.039035 TTTTGATCGGTTGGGGGAGG 59.961 55.000 0.00 0.00 0.00 4.30
950 1294 0.251430 GGTTTTGATCGGTTGGGGGA 60.251 55.000 0.00 0.00 0.00 4.81
951 1295 0.540830 TGGTTTTGATCGGTTGGGGG 60.541 55.000 0.00 0.00 0.00 5.40
952 1296 0.887933 CTGGTTTTGATCGGTTGGGG 59.112 55.000 0.00 0.00 0.00 4.96
953 1297 0.243636 GCTGGTTTTGATCGGTTGGG 59.756 55.000 0.00 0.00 0.00 4.12
954 1298 0.958091 TGCTGGTTTTGATCGGTTGG 59.042 50.000 0.00 0.00 0.00 3.77
960 1304 3.996363 GGATTGGTTTGCTGGTTTTGATC 59.004 43.478 0.00 0.00 0.00 2.92
961 1305 3.390639 TGGATTGGTTTGCTGGTTTTGAT 59.609 39.130 0.00 0.00 0.00 2.57
962 1306 2.768527 TGGATTGGTTTGCTGGTTTTGA 59.231 40.909 0.00 0.00 0.00 2.69
964 1308 2.503356 TGTGGATTGGTTTGCTGGTTTT 59.497 40.909 0.00 0.00 0.00 2.43
965 1309 2.114616 TGTGGATTGGTTTGCTGGTTT 58.885 42.857 0.00 0.00 0.00 3.27
966 1310 1.412343 GTGTGGATTGGTTTGCTGGTT 59.588 47.619 0.00 0.00 0.00 3.67
967 1311 1.039856 GTGTGGATTGGTTTGCTGGT 58.960 50.000 0.00 0.00 0.00 4.00
971 1315 0.951558 ACTCGTGTGGATTGGTTTGC 59.048 50.000 0.00 0.00 0.00 3.68
972 1316 1.194547 CGACTCGTGTGGATTGGTTTG 59.805 52.381 0.00 0.00 0.00 2.93
973 1317 1.069513 TCGACTCGTGTGGATTGGTTT 59.930 47.619 0.00 0.00 0.00 3.27
974 1318 0.677288 TCGACTCGTGTGGATTGGTT 59.323 50.000 0.00 0.00 0.00 3.67
976 1320 0.458543 CCTCGACTCGTGTGGATTGG 60.459 60.000 2.77 0.00 30.77 3.16
980 1324 2.675423 CCCCTCGACTCGTGTGGA 60.675 66.667 0.00 0.00 0.00 4.02
981 1325 4.436998 GCCCCTCGACTCGTGTGG 62.437 72.222 0.00 0.00 0.00 4.17
983 1327 2.283529 ATTGCCCCTCGACTCGTGT 61.284 57.895 0.00 0.00 0.00 4.49
984 1328 1.811266 CATTGCCCCTCGACTCGTG 60.811 63.158 0.00 0.00 0.00 4.35
985 1329 2.579201 CATTGCCCCTCGACTCGT 59.421 61.111 0.00 0.00 0.00 4.18
987 1331 2.514824 GCCATTGCCCCTCGACTC 60.515 66.667 0.00 0.00 0.00 3.36
1191 1558 0.620556 CATCCCTGTACACCTGCCTT 59.379 55.000 0.00 0.00 0.00 4.35
1221 1588 2.993008 GCATGGAGCCTCTGGACA 59.007 61.111 0.00 0.00 37.23 4.02
1393 3788 1.959899 CTGTAGTCCGCGACGTACGT 61.960 60.000 23.04 23.04 44.60 3.57
1428 3823 1.268352 GCCTGCTCCTCGTAGTCATAG 59.732 57.143 0.00 0.00 0.00 2.23
1479 3874 0.671781 ATGCTGTTCGTCCAGACAGC 60.672 55.000 18.58 18.58 45.53 4.40
1480 3875 1.073964 CATGCTGTTCGTCCAGACAG 58.926 55.000 8.02 0.00 34.23 3.51
1481 3876 0.950555 GCATGCTGTTCGTCCAGACA 60.951 55.000 11.37 6.14 34.23 3.41
1482 3877 0.671781 AGCATGCTGTTCGTCCAGAC 60.672 55.000 21.98 0.00 34.23 3.51
1483 3878 0.035317 AAGCATGCTGTTCGTCCAGA 59.965 50.000 23.48 0.00 34.23 3.86
1527 3922 2.841215 TGGACCAAGAAACGACGAATT 58.159 42.857 0.00 0.00 0.00 2.17
1535 3930 8.993121 CACAGACATATATATGGACCAAGAAAC 58.007 37.037 23.44 5.24 38.00 2.78
1536 3931 8.713971 ACACAGACATATATATGGACCAAGAAA 58.286 33.333 23.44 0.00 38.00 2.52
1538 3933 7.855784 ACACAGACATATATATGGACCAAGA 57.144 36.000 23.44 0.00 38.00 3.02
1539 3934 9.809096 GATACACAGACATATATATGGACCAAG 57.191 37.037 23.44 12.52 38.00 3.61
1541 3936 8.971073 CAGATACACAGACATATATATGGACCA 58.029 37.037 23.44 0.00 38.00 4.02
1544 3939 7.841222 AGCCAGATACACAGACATATATATGGA 59.159 37.037 23.44 0.00 38.24 3.41
1555 3950 8.746052 ATAGATATCTAGCCAGATACACAGAC 57.254 38.462 17.22 0.00 44.63 3.51
1567 3962 8.145122 GCATGGTAACCTAATAGATATCTAGCC 58.855 40.741 17.22 9.39 0.00 3.93
1583 3978 8.565416 GGATTGTTAAATACTAGCATGGTAACC 58.435 37.037 6.04 0.00 35.04 2.85
1663 4222 6.317893 ACCAGACACGAATTAGTTTTTGAGTT 59.682 34.615 0.00 0.00 0.00 3.01
1677 4236 6.429692 ACAATAAATTGATCACCAGACACGAA 59.570 34.615 9.60 0.00 40.14 3.85
1684 4243 7.031372 CCAACAGACAATAAATTGATCACCAG 58.969 38.462 9.60 0.00 40.14 4.00
1701 4265 4.034510 GCATACTTAGACATGCCAACAGAC 59.965 45.833 10.76 0.00 41.36 3.51
1705 4269 4.963276 TTGCATACTTAGACATGCCAAC 57.037 40.909 16.36 0.00 45.59 3.77
1747 4311 0.606944 TCACGCCCATACGCCTTTTT 60.607 50.000 0.00 0.00 36.19 1.94
1748 4312 1.003112 TCACGCCCATACGCCTTTT 60.003 52.632 0.00 0.00 36.19 2.27
1750 4314 2.125269 GTCACGCCCATACGCCTT 60.125 61.111 0.00 0.00 36.19 4.35
1751 4315 4.157120 GGTCACGCCCATACGCCT 62.157 66.667 0.00 0.00 36.19 5.52
1775 4339 4.794648 TTGGATTCCCAGCCGCCG 62.795 66.667 0.00 0.00 44.60 6.46
1781 4345 1.529244 GGGGCGATTGGATTCCCAG 60.529 63.158 0.00 0.00 44.60 4.45
1782 4346 2.312640 TGGGGCGATTGGATTCCCA 61.313 57.895 0.00 0.00 44.59 4.37
1786 4350 2.124320 CCGTGGGGCGATTGGATT 60.124 61.111 0.00 0.00 44.77 3.01
1805 4369 0.041576 GGCGAACCGGCGATATTTTC 60.042 55.000 9.30 1.82 43.33 2.29
1831 4395 2.791927 GGGCTAGAAAAAGCGCCG 59.208 61.111 2.29 0.00 46.59 6.46
1834 4398 1.032114 CCCAGGGGCTAGAAAAAGCG 61.032 60.000 0.00 0.00 43.74 4.68
1835 4399 0.684479 CCCCAGGGGCTAGAAAAAGC 60.684 60.000 13.35 0.00 41.99 3.51
1836 4400 3.596362 CCCCAGGGGCTAGAAAAAG 57.404 57.895 13.35 0.00 35.35 2.27
1855 4419 0.318275 GAGCATCTCTAGCCGTTCGG 60.318 60.000 6.90 6.90 0.00 4.30
1856 4420 3.171705 GAGCATCTCTAGCCGTTCG 57.828 57.895 0.00 0.00 0.00 3.95
1869 4433 9.785982 AGTTAAAAAGAAGAGAAGTAAGAGCAT 57.214 29.630 0.00 0.00 0.00 3.79
1870 4434 9.614792 AAGTTAAAAAGAAGAGAAGTAAGAGCA 57.385 29.630 0.00 0.00 0.00 4.26
1877 4640 9.990360 CTCCTAGAAGTTAAAAAGAAGAGAAGT 57.010 33.333 0.00 0.00 0.00 3.01
1880 4643 9.144298 TCACTCCTAGAAGTTAAAAAGAAGAGA 57.856 33.333 0.00 0.00 0.00 3.10
1893 4656 9.091220 AGTTTAACTTGTATCACTCCTAGAAGT 57.909 33.333 0.00 0.00 35.04 3.01
1894 4657 9.930693 AAGTTTAACTTGTATCACTCCTAGAAG 57.069 33.333 9.77 0.00 37.00 2.85
1927 4690 9.326413 GCCTGAAGTAGATTAAGCTTACATAAA 57.674 33.333 5.45 0.00 0.00 1.40
1928 4691 7.931948 GGCCTGAAGTAGATTAAGCTTACATAA 59.068 37.037 5.45 0.00 0.00 1.90
1930 4693 6.126768 TGGCCTGAAGTAGATTAAGCTTACAT 60.127 38.462 5.45 3.41 0.00 2.29
1931 4694 5.188948 TGGCCTGAAGTAGATTAAGCTTACA 59.811 40.000 5.45 0.00 0.00 2.41
1932 4695 5.671493 TGGCCTGAAGTAGATTAAGCTTAC 58.329 41.667 5.45 0.00 0.00 2.34
1933 4696 5.950544 TGGCCTGAAGTAGATTAAGCTTA 57.049 39.130 3.32 0.86 0.00 3.09
1934 4697 4.844349 TGGCCTGAAGTAGATTAAGCTT 57.156 40.909 3.32 3.48 0.00 3.74
1935 4698 4.712476 CATGGCCTGAAGTAGATTAAGCT 58.288 43.478 3.32 0.00 0.00 3.74
1936 4699 3.251972 GCATGGCCTGAAGTAGATTAAGC 59.748 47.826 3.32 0.00 0.00 3.09
1937 4700 4.712476 AGCATGGCCTGAAGTAGATTAAG 58.288 43.478 3.32 0.00 0.00 1.85
1938 4701 4.778213 AGCATGGCCTGAAGTAGATTAA 57.222 40.909 3.32 0.00 0.00 1.40
1940 4703 3.659183 AAGCATGGCCTGAAGTAGATT 57.341 42.857 3.32 0.00 0.00 2.40
2006 5157 9.162764 GCTCGCTTCCATATATATAAGGAAAAA 57.837 33.333 23.17 13.90 39.00 1.94
2008 5159 7.764443 GTGCTCGCTTCCATATATATAAGGAAA 59.236 37.037 23.17 12.52 39.00 3.13
2009 5160 7.093509 TGTGCTCGCTTCCATATATATAAGGAA 60.094 37.037 22.16 22.16 37.68 3.36
2010 5161 6.379988 TGTGCTCGCTTCCATATATATAAGGA 59.620 38.462 11.81 11.81 0.00 3.36
2011 5162 6.573434 TGTGCTCGCTTCCATATATATAAGG 58.427 40.000 7.57 7.57 0.00 2.69
2012 5163 7.708322 ACATGTGCTCGCTTCCATATATATAAG 59.292 37.037 0.00 0.00 0.00 1.73
2015 5166 5.982356 ACATGTGCTCGCTTCCATATATAT 58.018 37.500 0.00 0.00 0.00 0.86
2017 5168 4.277515 ACATGTGCTCGCTTCCATATAT 57.722 40.909 0.00 0.00 0.00 0.86
2018 5169 3.751479 ACATGTGCTCGCTTCCATATA 57.249 42.857 0.00 0.00 0.00 0.86
2019 5170 2.615447 CAACATGTGCTCGCTTCCATAT 59.385 45.455 0.00 0.00 0.00 1.78
2021 5172 0.806868 CAACATGTGCTCGCTTCCAT 59.193 50.000 0.00 0.00 0.00 3.41
2022 5173 0.534877 ACAACATGTGCTCGCTTCCA 60.535 50.000 0.00 0.00 0.00 3.53
2024 5175 2.405892 AAACAACATGTGCTCGCTTC 57.594 45.000 0.00 0.00 0.00 3.86
2026 5177 1.949525 AGAAAACAACATGTGCTCGCT 59.050 42.857 0.00 0.00 0.00 4.93
2027 5178 2.405892 AGAAAACAACATGTGCTCGC 57.594 45.000 0.00 0.00 0.00 5.03
2029 5180 4.671377 TGTCAAGAAAACAACATGTGCTC 58.329 39.130 0.00 0.00 0.00 4.26
2030 5181 4.717233 TGTCAAGAAAACAACATGTGCT 57.283 36.364 0.00 0.00 0.00 4.40
2031 5182 5.101628 TCTTGTCAAGAAAACAACATGTGC 58.898 37.500 13.00 0.00 33.83 4.57
2032 5183 7.488792 TCAATCTTGTCAAGAAAACAACATGTG 59.511 33.333 18.93 0.00 41.63 3.21
2033 5184 7.546358 TCAATCTTGTCAAGAAAACAACATGT 58.454 30.769 18.93 0.00 41.63 3.21
2034 5185 7.703621 ACTCAATCTTGTCAAGAAAACAACATG 59.296 33.333 18.93 8.41 41.63 3.21
2035 5186 7.703621 CACTCAATCTTGTCAAGAAAACAACAT 59.296 33.333 18.93 0.00 41.63 2.71
2036 5187 7.028962 CACTCAATCTTGTCAAGAAAACAACA 58.971 34.615 18.93 0.00 41.63 3.33
2037 5188 6.473455 CCACTCAATCTTGTCAAGAAAACAAC 59.527 38.462 18.93 0.00 41.63 3.32
2038 5189 6.563422 CCACTCAATCTTGTCAAGAAAACAA 58.437 36.000 18.93 3.46 41.63 2.83
2040 5191 4.978580 GCCACTCAATCTTGTCAAGAAAAC 59.021 41.667 18.93 0.73 41.63 2.43
2041 5192 4.889409 AGCCACTCAATCTTGTCAAGAAAA 59.111 37.500 18.93 6.99 41.63 2.29
2042 5193 4.276678 CAGCCACTCAATCTTGTCAAGAAA 59.723 41.667 18.93 7.31 41.63 2.52
2043 5194 3.817084 CAGCCACTCAATCTTGTCAAGAA 59.183 43.478 18.93 2.49 41.63 2.52
2044 5195 3.405831 CAGCCACTCAATCTTGTCAAGA 58.594 45.455 17.46 17.46 42.69 3.02
2045 5196 2.486982 CCAGCCACTCAATCTTGTCAAG 59.513 50.000 6.21 6.21 0.00 3.02
2046 5197 2.106338 TCCAGCCACTCAATCTTGTCAA 59.894 45.455 0.00 0.00 0.00 3.18
2047 5198 1.699083 TCCAGCCACTCAATCTTGTCA 59.301 47.619 0.00 0.00 0.00 3.58
2048 5199 2.079925 GTCCAGCCACTCAATCTTGTC 58.920 52.381 0.00 0.00 0.00 3.18
2049 5200 1.701847 AGTCCAGCCACTCAATCTTGT 59.298 47.619 0.00 0.00 0.00 3.16
2050 5201 2.486472 AGTCCAGCCACTCAATCTTG 57.514 50.000 0.00 0.00 0.00 3.02
2051 5202 3.515602 AAAGTCCAGCCACTCAATCTT 57.484 42.857 0.00 0.00 0.00 2.40
2052 5203 4.640771 TTAAAGTCCAGCCACTCAATCT 57.359 40.909 0.00 0.00 0.00 2.40
2053 5204 5.904362 ATTTAAAGTCCAGCCACTCAATC 57.096 39.130 0.00 0.00 0.00 2.67
2054 5205 5.106157 CGAATTTAAAGTCCAGCCACTCAAT 60.106 40.000 9.88 0.00 0.00 2.57
2055 5206 4.215399 CGAATTTAAAGTCCAGCCACTCAA 59.785 41.667 9.88 0.00 0.00 3.02
2056 5207 3.751175 CGAATTTAAAGTCCAGCCACTCA 59.249 43.478 9.88 0.00 0.00 3.41
2057 5208 3.426292 GCGAATTTAAAGTCCAGCCACTC 60.426 47.826 9.88 0.00 0.00 3.51
2058 5209 2.488153 GCGAATTTAAAGTCCAGCCACT 59.512 45.455 9.88 0.00 0.00 4.00
2059 5210 2.488153 AGCGAATTTAAAGTCCAGCCAC 59.512 45.455 9.88 0.00 0.00 5.01
2060 5211 2.487762 CAGCGAATTTAAAGTCCAGCCA 59.512 45.455 9.88 0.00 0.00 4.75
2061 5212 2.732282 GCAGCGAATTTAAAGTCCAGCC 60.732 50.000 9.88 0.00 0.00 4.85
2062 5213 2.095263 TGCAGCGAATTTAAAGTCCAGC 60.095 45.455 9.88 11.14 0.00 4.85
2063 5214 3.829886 TGCAGCGAATTTAAAGTCCAG 57.170 42.857 9.88 1.95 0.00 3.86
2064 5215 3.505680 ACATGCAGCGAATTTAAAGTCCA 59.494 39.130 9.88 2.90 0.00 4.02
2065 5216 4.096732 ACATGCAGCGAATTTAAAGTCC 57.903 40.909 9.88 3.55 0.00 3.85
2066 5217 5.739161 CCTAACATGCAGCGAATTTAAAGTC 59.261 40.000 5.58 5.58 0.00 3.01
2067 5218 5.640732 CCTAACATGCAGCGAATTTAAAGT 58.359 37.500 0.00 0.00 0.00 2.66
2068 5219 4.500477 GCCTAACATGCAGCGAATTTAAAG 59.500 41.667 0.00 0.00 0.00 1.85
2069 5220 4.157656 AGCCTAACATGCAGCGAATTTAAA 59.842 37.500 0.00 0.00 0.00 1.52
2070 5221 3.694072 AGCCTAACATGCAGCGAATTTAA 59.306 39.130 0.00 0.00 0.00 1.52
2071 5222 3.278574 AGCCTAACATGCAGCGAATTTA 58.721 40.909 0.00 0.00 0.00 1.40
2072 5223 2.094675 AGCCTAACATGCAGCGAATTT 58.905 42.857 0.00 0.00 0.00 1.82
2073 5224 1.755179 AGCCTAACATGCAGCGAATT 58.245 45.000 0.00 0.00 0.00 2.17
2074 5225 1.755179 AAGCCTAACATGCAGCGAAT 58.245 45.000 0.00 0.00 0.00 3.34
2075 5226 1.199789 CAAAGCCTAACATGCAGCGAA 59.800 47.619 0.00 0.00 0.00 4.70
2076 5227 0.804364 CAAAGCCTAACATGCAGCGA 59.196 50.000 0.00 0.00 0.00 4.93
2077 5228 0.523072 ACAAAGCCTAACATGCAGCG 59.477 50.000 0.00 0.00 0.00 5.18
2078 5229 1.541147 TGACAAAGCCTAACATGCAGC 59.459 47.619 0.00 0.00 0.00 5.25
2079 5230 4.637534 ACTATGACAAAGCCTAACATGCAG 59.362 41.667 0.00 0.00 0.00 4.41
2080 5231 4.588899 ACTATGACAAAGCCTAACATGCA 58.411 39.130 0.00 0.00 0.00 3.96
2081 5232 5.817816 AGTACTATGACAAAGCCTAACATGC 59.182 40.000 0.00 0.00 0.00 4.06
2082 5233 8.942338 TTAGTACTATGACAAAGCCTAACATG 57.058 34.615 2.79 0.00 0.00 3.21
2084 5235 9.953565 AAATTAGTACTATGACAAAGCCTAACA 57.046 29.630 2.79 0.00 0.00 2.41
2088 5239 9.167311 CAAGAAATTAGTACTATGACAAAGCCT 57.833 33.333 2.79 0.00 0.00 4.58
2089 5240 9.162764 TCAAGAAATTAGTACTATGACAAAGCC 57.837 33.333 2.79 0.00 0.00 4.35
2090 5241 9.974750 GTCAAGAAATTAGTACTATGACAAAGC 57.025 33.333 19.91 1.14 36.75 3.51
2093 5244 9.653287 CTGGTCAAGAAATTAGTACTATGACAA 57.347 33.333 23.56 16.46 38.09 3.18
2094 5245 7.764443 GCTGGTCAAGAAATTAGTACTATGACA 59.236 37.037 23.56 14.01 38.09 3.58
2095 5246 7.982354 AGCTGGTCAAGAAATTAGTACTATGAC 59.018 37.037 17.89 17.89 36.18 3.06
2096 5247 8.079211 AGCTGGTCAAGAAATTAGTACTATGA 57.921 34.615 2.79 0.43 0.00 2.15
2097 5248 8.723942 AAGCTGGTCAAGAAATTAGTACTATG 57.276 34.615 2.79 0.00 0.00 2.23
2103 5254 9.740710 AACTATTAAGCTGGTCAAGAAATTAGT 57.259 29.630 0.00 0.00 0.00 2.24
2107 5258 9.696917 CAAAAACTATTAAGCTGGTCAAGAAAT 57.303 29.630 0.00 0.00 0.00 2.17
2108 5259 8.691797 ACAAAAACTATTAAGCTGGTCAAGAAA 58.308 29.630 0.00 0.00 0.00 2.52
2109 5260 8.134895 CACAAAAACTATTAAGCTGGTCAAGAA 58.865 33.333 0.00 0.00 0.00 2.52
2110 5261 7.255451 CCACAAAAACTATTAAGCTGGTCAAGA 60.255 37.037 0.00 0.00 0.00 3.02
2111 5262 6.863126 CCACAAAAACTATTAAGCTGGTCAAG 59.137 38.462 0.00 0.00 0.00 3.02
2112 5263 6.322712 ACCACAAAAACTATTAAGCTGGTCAA 59.677 34.615 0.00 0.00 0.00 3.18
2113 5264 5.830991 ACCACAAAAACTATTAAGCTGGTCA 59.169 36.000 0.00 0.00 0.00 4.02
2114 5265 6.327279 ACCACAAAAACTATTAAGCTGGTC 57.673 37.500 0.00 0.00 0.00 4.02
2115 5266 6.433093 CCTACCACAAAAACTATTAAGCTGGT 59.567 38.462 0.00 0.00 33.98 4.00
2116 5267 6.657541 TCCTACCACAAAAACTATTAAGCTGG 59.342 38.462 0.00 0.00 0.00 4.85
2117 5268 7.681939 TCCTACCACAAAAACTATTAAGCTG 57.318 36.000 0.00 0.00 0.00 4.24
2118 5269 7.280205 CGATCCTACCACAAAAACTATTAAGCT 59.720 37.037 0.00 0.00 0.00 3.74
2119 5270 7.065443 ACGATCCTACCACAAAAACTATTAAGC 59.935 37.037 0.00 0.00 0.00 3.09
2120 5271 8.488651 ACGATCCTACCACAAAAACTATTAAG 57.511 34.615 0.00 0.00 0.00 1.85
2121 5272 9.590451 CTACGATCCTACCACAAAAACTATTAA 57.410 33.333 0.00 0.00 0.00 1.40
2122 5273 8.752187 ACTACGATCCTACCACAAAAACTATTA 58.248 33.333 0.00 0.00 0.00 0.98
2123 5274 7.618137 ACTACGATCCTACCACAAAAACTATT 58.382 34.615 0.00 0.00 0.00 1.73
2124 5275 7.093640 TGACTACGATCCTACCACAAAAACTAT 60.094 37.037 0.00 0.00 0.00 2.12
2125 5276 6.209192 TGACTACGATCCTACCACAAAAACTA 59.791 38.462 0.00 0.00 0.00 2.24
2126 5277 5.011329 TGACTACGATCCTACCACAAAAACT 59.989 40.000 0.00 0.00 0.00 2.66
2127 5278 5.232463 TGACTACGATCCTACCACAAAAAC 58.768 41.667 0.00 0.00 0.00 2.43
2128 5279 5.471556 TGACTACGATCCTACCACAAAAA 57.528 39.130 0.00 0.00 0.00 1.94
2129 5280 5.670792 ATGACTACGATCCTACCACAAAA 57.329 39.130 0.00 0.00 0.00 2.44
2130 5281 5.221185 GCTATGACTACGATCCTACCACAAA 60.221 44.000 0.00 0.00 0.00 2.83
2131 5282 4.277672 GCTATGACTACGATCCTACCACAA 59.722 45.833 0.00 0.00 0.00 3.33
2132 5283 3.819337 GCTATGACTACGATCCTACCACA 59.181 47.826 0.00 0.00 0.00 4.17
2133 5284 4.073549 AGCTATGACTACGATCCTACCAC 58.926 47.826 0.00 0.00 0.00 4.16
2134 5285 4.368565 AGCTATGACTACGATCCTACCA 57.631 45.455 0.00 0.00 0.00 3.25
2135 5286 7.393841 AATTAGCTATGACTACGATCCTACC 57.606 40.000 0.00 0.00 0.00 3.18
2136 5287 9.991388 CTTAATTAGCTATGACTACGATCCTAC 57.009 37.037 0.00 0.00 0.00 3.18
2137 5288 9.955102 TCTTAATTAGCTATGACTACGATCCTA 57.045 33.333 0.00 0.00 0.00 2.94
2138 5289 8.865420 TCTTAATTAGCTATGACTACGATCCT 57.135 34.615 0.00 0.00 0.00 3.24
2139 5290 7.698970 GCTCTTAATTAGCTATGACTACGATCC 59.301 40.741 0.00 0.00 37.01 3.36
2140 5291 8.237949 TGCTCTTAATTAGCTATGACTACGATC 58.762 37.037 10.34 0.00 40.73 3.69
2141 5292 8.112016 TGCTCTTAATTAGCTATGACTACGAT 57.888 34.615 10.34 0.00 40.73 3.73
2142 5293 7.506328 TGCTCTTAATTAGCTATGACTACGA 57.494 36.000 10.34 0.00 40.73 3.43
2143 5294 7.863375 ACTTGCTCTTAATTAGCTATGACTACG 59.137 37.037 10.34 0.00 40.73 3.51
2146 5297 8.696374 TGTACTTGCTCTTAATTAGCTATGACT 58.304 33.333 10.34 0.00 40.73 3.41
2147 5298 8.873215 TGTACTTGCTCTTAATTAGCTATGAC 57.127 34.615 10.34 5.68 40.73 3.06
2156 5307 9.686683 ACCATTCTATTGTACTTGCTCTTAATT 57.313 29.630 0.00 0.00 0.00 1.40
2160 5311 9.988815 CTATACCATTCTATTGTACTTGCTCTT 57.011 33.333 0.00 0.00 0.00 2.85
2161 5312 8.589338 CCTATACCATTCTATTGTACTTGCTCT 58.411 37.037 0.00 0.00 0.00 4.09
2162 5313 7.332182 GCCTATACCATTCTATTGTACTTGCTC 59.668 40.741 0.00 0.00 0.00 4.26
2163 5314 7.162082 GCCTATACCATTCTATTGTACTTGCT 58.838 38.462 0.00 0.00 0.00 3.91
2164 5315 6.090898 CGCCTATACCATTCTATTGTACTTGC 59.909 42.308 0.00 0.00 0.00 4.01
2165 5316 6.590292 CCGCCTATACCATTCTATTGTACTTG 59.410 42.308 0.00 0.00 0.00 3.16
2166 5317 6.295688 CCCGCCTATACCATTCTATTGTACTT 60.296 42.308 0.00 0.00 0.00 2.24
2167 5318 5.187186 CCCGCCTATACCATTCTATTGTACT 59.813 44.000 0.00 0.00 0.00 2.73
2168 5319 5.416947 CCCGCCTATACCATTCTATTGTAC 58.583 45.833 0.00 0.00 0.00 2.90
2169 5320 4.081309 GCCCGCCTATACCATTCTATTGTA 60.081 45.833 0.00 0.00 0.00 2.41
2170 5321 3.307480 GCCCGCCTATACCATTCTATTGT 60.307 47.826 0.00 0.00 0.00 2.71
2171 5322 3.055094 AGCCCGCCTATACCATTCTATTG 60.055 47.826 0.00 0.00 0.00 1.90
2172 5323 3.055094 CAGCCCGCCTATACCATTCTATT 60.055 47.826 0.00 0.00 0.00 1.73
2173 5324 2.501723 CAGCCCGCCTATACCATTCTAT 59.498 50.000 0.00 0.00 0.00 1.98
2174 5325 1.899814 CAGCCCGCCTATACCATTCTA 59.100 52.381 0.00 0.00 0.00 2.10
2175 5326 0.687354 CAGCCCGCCTATACCATTCT 59.313 55.000 0.00 0.00 0.00 2.40
2176 5327 0.396811 ACAGCCCGCCTATACCATTC 59.603 55.000 0.00 0.00 0.00 2.67
2177 5328 1.724545 TACAGCCCGCCTATACCATT 58.275 50.000 0.00 0.00 0.00 3.16
2178 5329 1.623811 CTTACAGCCCGCCTATACCAT 59.376 52.381 0.00 0.00 0.00 3.55
2179 5330 1.045407 CTTACAGCCCGCCTATACCA 58.955 55.000 0.00 0.00 0.00 3.25
2180 5331 1.000618 GTCTTACAGCCCGCCTATACC 59.999 57.143 0.00 0.00 0.00 2.73
2181 5332 1.962100 AGTCTTACAGCCCGCCTATAC 59.038 52.381 0.00 0.00 0.00 1.47
2182 5333 2.376695 AGTCTTACAGCCCGCCTATA 57.623 50.000 0.00 0.00 0.00 1.31
2183 5334 1.497161 AAGTCTTACAGCCCGCCTAT 58.503 50.000 0.00 0.00 0.00 2.57
2184 5335 1.272807 AAAGTCTTACAGCCCGCCTA 58.727 50.000 0.00 0.00 0.00 3.93
2185 5336 1.272807 TAAAGTCTTACAGCCCGCCT 58.727 50.000 0.00 0.00 0.00 5.52
2186 5337 2.103537 TTAAAGTCTTACAGCCCGCC 57.896 50.000 0.00 0.00 0.00 6.13
2187 5338 6.373186 AATATTTAAAGTCTTACAGCCCGC 57.627 37.500 0.00 0.00 0.00 6.13
2211 5362 9.994432 CTTTCTTCGCTAACTCATCAAAAATAT 57.006 29.630 0.00 0.00 0.00 1.28
2212 5363 9.214957 TCTTTCTTCGCTAACTCATCAAAAATA 57.785 29.630 0.00 0.00 0.00 1.40
2213 5364 8.099364 TCTTTCTTCGCTAACTCATCAAAAAT 57.901 30.769 0.00 0.00 0.00 1.82
2214 5365 7.490962 TCTTTCTTCGCTAACTCATCAAAAA 57.509 32.000 0.00 0.00 0.00 1.94
2215 5366 7.441157 TCTTCTTTCTTCGCTAACTCATCAAAA 59.559 33.333 0.00 0.00 0.00 2.44
2216 5367 6.929049 TCTTCTTTCTTCGCTAACTCATCAAA 59.071 34.615 0.00 0.00 0.00 2.69
2217 5368 6.455647 TCTTCTTTCTTCGCTAACTCATCAA 58.544 36.000 0.00 0.00 0.00 2.57
2218 5369 6.025749 TCTTCTTTCTTCGCTAACTCATCA 57.974 37.500 0.00 0.00 0.00 3.07
2219 5370 6.754209 TCATCTTCTTTCTTCGCTAACTCATC 59.246 38.462 0.00 0.00 0.00 2.92
2220 5371 6.634805 TCATCTTCTTTCTTCGCTAACTCAT 58.365 36.000 0.00 0.00 0.00 2.90
2221 5372 6.025749 TCATCTTCTTTCTTCGCTAACTCA 57.974 37.500 0.00 0.00 0.00 3.41
2222 5373 6.952935 TTCATCTTCTTTCTTCGCTAACTC 57.047 37.500 0.00 0.00 0.00 3.01
2223 5374 7.155328 TCTTTCATCTTCTTTCTTCGCTAACT 58.845 34.615 0.00 0.00 0.00 2.24
2224 5375 7.329717 TCTCTTTCATCTTCTTTCTTCGCTAAC 59.670 37.037 0.00 0.00 0.00 2.34
2225 5376 7.378966 TCTCTTTCATCTTCTTTCTTCGCTAA 58.621 34.615 0.00 0.00 0.00 3.09
2226 5377 6.925211 TCTCTTTCATCTTCTTTCTTCGCTA 58.075 36.000 0.00 0.00 0.00 4.26
2227 5378 5.788450 TCTCTTTCATCTTCTTTCTTCGCT 58.212 37.500 0.00 0.00 0.00 4.93
2228 5379 6.367422 TCTTCTCTTTCATCTTCTTTCTTCGC 59.633 38.462 0.00 0.00 0.00 4.70
2229 5380 7.812191 TCTCTTCTCTTTCATCTTCTTTCTTCG 59.188 37.037 0.00 0.00 0.00 3.79
2230 5381 9.487790 TTCTCTTCTCTTTCATCTTCTTTCTTC 57.512 33.333 0.00 0.00 0.00 2.87
2231 5382 9.492973 CTTCTCTTCTCTTTCATCTTCTTTCTT 57.507 33.333 0.00 0.00 0.00 2.52
2235 5386 5.868801 CGCTTCTCTTCTCTTTCATCTTCTT 59.131 40.000 0.00 0.00 0.00 2.52
2244 5395 1.971357 TGACCCGCTTCTCTTCTCTTT 59.029 47.619 0.00 0.00 0.00 2.52
2246 5397 1.859302 ATGACCCGCTTCTCTTCTCT 58.141 50.000 0.00 0.00 0.00 3.10
2249 5400 1.410882 AGCTATGACCCGCTTCTCTTC 59.589 52.381 0.00 0.00 31.17 2.87
2250 5401 1.490574 AGCTATGACCCGCTTCTCTT 58.509 50.000 0.00 0.00 31.17 2.85
2254 5405 1.870167 GCTGTAGCTATGACCCGCTTC 60.870 57.143 0.00 0.00 37.68 3.86
2255 5406 0.105039 GCTGTAGCTATGACCCGCTT 59.895 55.000 0.00 0.00 37.68 4.68
2258 5409 0.595053 CGTGCTGTAGCTATGACCCG 60.595 60.000 5.38 0.00 42.66 5.28
2260 5411 1.927174 CAACGTGCTGTAGCTATGACC 59.073 52.381 5.38 0.00 42.66 4.02
2262 5413 2.492088 AGACAACGTGCTGTAGCTATGA 59.508 45.455 5.38 0.00 42.66 2.15
2263 5414 2.881074 AGACAACGTGCTGTAGCTATG 58.119 47.619 5.38 0.00 42.66 2.23
2264 5415 3.442625 TGTAGACAACGTGCTGTAGCTAT 59.557 43.478 5.38 0.00 42.66 2.97
2266 5417 1.611977 TGTAGACAACGTGCTGTAGCT 59.388 47.619 5.38 0.00 42.66 3.32
2267 5418 2.060326 TGTAGACAACGTGCTGTAGC 57.940 50.000 0.00 0.00 42.50 3.58
2268 5419 3.367932 CCAATGTAGACAACGTGCTGTAG 59.632 47.826 0.00 0.00 0.00 2.74
2269 5420 3.322369 CCAATGTAGACAACGTGCTGTA 58.678 45.455 0.00 0.00 0.00 2.74
2270 5421 2.143122 CCAATGTAGACAACGTGCTGT 58.857 47.619 0.00 0.00 0.00 4.40
2271 5422 1.464608 CCCAATGTAGACAACGTGCTG 59.535 52.381 0.00 0.00 0.00 4.41
2273 5424 1.732259 CTCCCAATGTAGACAACGTGC 59.268 52.381 0.00 0.00 0.00 5.34
2274 5425 1.732259 GCTCCCAATGTAGACAACGTG 59.268 52.381 0.00 0.00 0.00 4.49
2276 5427 2.386661 AGCTCCCAATGTAGACAACG 57.613 50.000 0.00 0.00 0.00 4.10
2278 5429 3.263170 TGCTTAGCTCCCAATGTAGACAA 59.737 43.478 5.60 0.00 0.00 3.18
2279 5430 2.837591 TGCTTAGCTCCCAATGTAGACA 59.162 45.455 5.60 0.00 0.00 3.41
2280 5431 3.543680 TGCTTAGCTCCCAATGTAGAC 57.456 47.619 5.60 0.00 0.00 2.59
2283 5448 4.778213 AGAATGCTTAGCTCCCAATGTA 57.222 40.909 5.60 0.00 0.00 2.29
2300 5465 4.207891 ACGTCTGGTTGATGCTAAGAAT 57.792 40.909 0.00 0.00 35.15 2.40
2313 5478 1.705873 AGTGGAGAAGAACGTCTGGT 58.294 50.000 0.00 0.00 0.00 4.00
2317 5482 2.169330 AGGGTAGTGGAGAAGAACGTC 58.831 52.381 0.00 0.00 0.00 4.34
2323 5488 1.205055 GGGGAAGGGTAGTGGAGAAG 58.795 60.000 0.00 0.00 0.00 2.85
2330 5495 0.770557 TGCTTGTGGGGAAGGGTAGT 60.771 55.000 0.00 0.00 0.00 2.73
2334 5499 0.895559 GAAGTGCTTGTGGGGAAGGG 60.896 60.000 0.00 0.00 0.00 3.95
2358 5523 1.141234 GCGAGGAAACCCTAGTCGG 59.859 63.158 0.00 0.00 33.25 4.79
2397 5562 3.984200 GAGGTATATCGGCGGCGGC 62.984 68.421 31.73 24.75 38.90 6.53
2400 5565 1.154073 GACGAGGTATATCGGCGGC 60.154 63.158 7.21 0.00 46.91 6.53
2409 5574 0.759346 GGCCATGGAAGACGAGGTAT 59.241 55.000 18.40 0.00 0.00 2.73
2416 5581 2.439507 TGGATCTAAGGCCATGGAAGAC 59.560 50.000 18.40 1.61 0.00 3.01
2418 5583 3.137176 TCTTGGATCTAAGGCCATGGAAG 59.863 47.826 18.40 6.03 33.46 3.46
2422 5587 3.484407 CCTTCTTGGATCTAAGGCCATG 58.516 50.000 17.73 2.74 38.35 3.66
2423 5588 3.872459 CCTTCTTGGATCTAAGGCCAT 57.128 47.619 17.73 0.00 38.35 4.40
2435 5600 2.417719 GGATACATAGCGCCTTCTTGG 58.582 52.381 2.29 0.00 39.35 3.61
2438 5603 0.603569 CGGGATACATAGCGCCTTCT 59.396 55.000 2.29 0.00 39.74 2.85
2440 5605 1.671742 CCGGGATACATAGCGCCTT 59.328 57.895 2.29 0.00 39.74 4.35
2451 5616 4.997884 CCAACAATGGCCGGGATA 57.002 55.556 2.18 0.00 40.58 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.