Multiple sequence alignment - TraesCS3B01G482200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G482200 chr3B 100.000 3299 0 0 1 3299 729413682 729416980 0.000000e+00 6093.0
1 TraesCS3B01G482200 chr3B 89.192 842 75 13 1 833 732873307 732872473 0.000000e+00 1037.0
2 TraesCS3B01G482200 chr3D 96.382 1603 44 3 831 2421 549704843 549706443 0.000000e+00 2627.0
3 TraesCS3B01G482200 chr3D 89.138 847 71 16 1 838 567547855 567547021 0.000000e+00 1035.0
4 TraesCS3B01G482200 chr3D 95.455 198 9 0 3101 3298 549706946 549707143 1.910000e-82 316.0
5 TraesCS3B01G482200 chr3D 79.078 282 51 8 1392 1669 95246145 95245868 1.560000e-43 187.0
6 TraesCS3B01G482200 chr3A 95.696 1603 44 6 831 2421 686863074 686864663 0.000000e+00 2555.0
7 TraesCS3B01G482200 chr3A 78.723 282 52 8 1392 1669 113342036 113341759 7.270000e-42 182.0
8 TraesCS3B01G482200 chr3A 78.467 274 53 6 1399 1669 542203127 542203397 1.220000e-39 174.0
9 TraesCS3B01G482200 chr3A 87.500 152 5 2 3148 3299 686865272 686865409 2.630000e-36 163.0
10 TraesCS3B01G482200 chr3A 94.595 37 0 1 3143 3179 13085202 13085236 4.600000e-04 56.5
11 TraesCS3B01G482200 chr5A 86.226 1619 172 29 832 2422 55018297 55019892 0.000000e+00 1707.0
12 TraesCS3B01G482200 chr5A 92.893 197 13 1 2651 2847 427318420 427318225 5.390000e-73 285.0
13 TraesCS3B01G482200 chr5D 86.139 1616 171 30 836 2421 65753574 65755166 0.000000e+00 1694.0
14 TraesCS3B01G482200 chr5D 81.019 432 65 12 2421 2849 367672666 367672249 8.830000e-86 327.0
15 TraesCS3B01G482200 chr5B 85.370 1620 186 28 836 2421 65279701 65278099 0.000000e+00 1631.0
16 TraesCS3B01G482200 chr5B 89.311 842 69 15 1 833 143298146 143297317 0.000000e+00 1037.0
17 TraesCS3B01G482200 chr2B 89.112 845 76 15 1 835 448931778 448932616 0.000000e+00 1037.0
18 TraesCS3B01G482200 chr2B 91.114 754 56 8 1 748 681944538 681945286 0.000000e+00 1011.0
19 TraesCS3B01G482200 chr2B 87.252 808 85 14 38 833 585190665 585189864 0.000000e+00 905.0
20 TraesCS3B01G482200 chr2B 91.075 493 38 6 347 835 90466838 90466348 0.000000e+00 662.0
21 TraesCS3B01G482200 chr4A 88.612 843 81 12 3 835 648138252 648137415 0.000000e+00 1011.0
22 TraesCS3B01G482200 chr4A 92.893 197 13 1 2651 2847 503614730 503614925 5.390000e-73 285.0
23 TraesCS3B01G482200 chr4A 94.872 39 2 0 3136 3174 728786093 728786055 9.880000e-06 62.1
24 TraesCS3B01G482200 chr4A 92.857 42 3 0 3133 3174 731152666 731152707 9.880000e-06 62.1
25 TraesCS3B01G482200 chr4A 92.857 42 3 0 3133 3174 731168031 731168072 9.880000e-06 62.1
26 TraesCS3B01G482200 chr1B 89.651 802 69 12 45 836 603603550 603602753 0.000000e+00 1009.0
27 TraesCS3B01G482200 chr1B 87.574 845 85 16 1 838 250429281 250428450 0.000000e+00 961.0
28 TraesCS3B01G482200 chr1B 92.893 197 13 1 2651 2847 563710638 563710833 5.390000e-73 285.0
29 TraesCS3B01G482200 chr1B 80.220 273 50 4 1399 1669 576205888 576206158 5.580000e-48 202.0
30 TraesCS3B01G482200 chr2D 82.838 437 47 21 2420 2847 54672390 54671973 1.870000e-97 366.0
31 TraesCS3B01G482200 chr7A 92.893 197 13 1 2651 2847 714590554 714590749 5.390000e-73 285.0
32 TraesCS3B01G482200 chr7A 94.872 39 2 0 3136 3174 9454524 9454486 9.880000e-06 62.1
33 TraesCS3B01G482200 chr7A 92.857 42 3 0 3133 3174 9645839 9645880 9.880000e-06 62.1
34 TraesCS3B01G482200 chr1D 87.149 249 30 2 2598 2846 473035625 473035379 6.970000e-72 281.0
35 TraesCS3B01G482200 chr1D 80.586 273 49 4 1399 1669 426587341 426587611 1.200000e-49 207.0
36 TraesCS3B01G482200 chr6B 92.386 197 14 1 2651 2847 623719047 623718852 2.510000e-71 279.0
37 TraesCS3B01G482200 chr4D 91.878 197 14 2 2651 2847 97909167 97908973 1.170000e-69 274.0
38 TraesCS3B01G482200 chr1A 80.147 272 50 4 1399 1668 521629506 521629775 2.010000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G482200 chr3B 729413682 729416980 3298 False 6093.0 6093 100.0000 1 3299 1 chr3B.!!$F1 3298
1 TraesCS3B01G482200 chr3B 732872473 732873307 834 True 1037.0 1037 89.1920 1 833 1 chr3B.!!$R1 832
2 TraesCS3B01G482200 chr3D 549704843 549707143 2300 False 1471.5 2627 95.9185 831 3298 2 chr3D.!!$F1 2467
3 TraesCS3B01G482200 chr3D 567547021 567547855 834 True 1035.0 1035 89.1380 1 838 1 chr3D.!!$R2 837
4 TraesCS3B01G482200 chr3A 686863074 686865409 2335 False 1359.0 2555 91.5980 831 3299 2 chr3A.!!$F3 2468
5 TraesCS3B01G482200 chr5A 55018297 55019892 1595 False 1707.0 1707 86.2260 832 2422 1 chr5A.!!$F1 1590
6 TraesCS3B01G482200 chr5D 65753574 65755166 1592 False 1694.0 1694 86.1390 836 2421 1 chr5D.!!$F1 1585
7 TraesCS3B01G482200 chr5B 65278099 65279701 1602 True 1631.0 1631 85.3700 836 2421 1 chr5B.!!$R1 1585
8 TraesCS3B01G482200 chr5B 143297317 143298146 829 True 1037.0 1037 89.3110 1 833 1 chr5B.!!$R2 832
9 TraesCS3B01G482200 chr2B 448931778 448932616 838 False 1037.0 1037 89.1120 1 835 1 chr2B.!!$F1 834
10 TraesCS3B01G482200 chr2B 681944538 681945286 748 False 1011.0 1011 91.1140 1 748 1 chr2B.!!$F2 747
11 TraesCS3B01G482200 chr2B 585189864 585190665 801 True 905.0 905 87.2520 38 833 1 chr2B.!!$R2 795
12 TraesCS3B01G482200 chr4A 648137415 648138252 837 True 1011.0 1011 88.6120 3 835 1 chr4A.!!$R1 832
13 TraesCS3B01G482200 chr1B 603602753 603603550 797 True 1009.0 1009 89.6510 45 836 1 chr1B.!!$R2 791
14 TraesCS3B01G482200 chr1B 250428450 250429281 831 True 961.0 961 87.5740 1 838 1 chr1B.!!$R1 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 316 0.321671 CTTCTGGGCAAAGAGGACGA 59.678 55.0 0.0 0.0 0.00 4.20 F
471 476 0.391263 GGACAACACCACCGAGGATC 60.391 60.0 0.0 0.0 41.22 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2244 2291 1.137697 CCCTAACTACACCATCCCCC 58.862 60.0 0.0 0.00 0.0 5.4 R
2459 2530 0.324368 TCTGCCGGCTCCTCTTCTTA 60.324 55.0 29.7 1.03 0.0 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 3.943137 TTGGAGAGGCCCCCGTCAT 62.943 63.158 0.00 0.00 34.97 3.06
183 184 1.025812 GTCTCATCACCGACGAGGAT 58.974 55.000 8.56 0.00 45.00 3.24
239 240 2.838748 ATCACCGAGGAGGACGAGCA 62.839 60.000 0.00 0.00 45.00 4.26
313 316 0.321671 CTTCTGGGCAAAGAGGACGA 59.678 55.000 0.00 0.00 0.00 4.20
320 323 0.884704 GCAAAGAGGACGACAAGGCA 60.885 55.000 0.00 0.00 0.00 4.75
400 404 3.864686 CGAGAACGGCGGGCAATG 61.865 66.667 13.24 0.00 35.72 2.82
471 476 0.391263 GGACAACACCACCGAGGATC 60.391 60.000 0.00 0.00 41.22 3.36
692 713 2.098298 CGCGCGCTGCATTTTAGT 59.902 55.556 30.48 0.00 46.97 2.24
703 724 0.804364 CATTTTAGTGCGCCTGCTGA 59.196 50.000 4.18 0.00 43.34 4.26
734 759 2.793946 CTGCATTTTAGCGCGGCT 59.206 55.556 8.83 8.38 43.41 5.52
797 822 0.943835 GCGCCGCAAACCAGATTTTT 60.944 50.000 3.15 0.00 0.00 1.94
852 878 0.754472 AAACAATTGCACAGCCAGCT 59.246 45.000 5.05 0.00 0.00 4.24
896 927 3.958798 ACACCGTCACCTAATGCTACTAT 59.041 43.478 0.00 0.00 0.00 2.12
897 928 5.135383 ACACCGTCACCTAATGCTACTATA 58.865 41.667 0.00 0.00 0.00 1.31
1107 1145 2.567049 GTCTACCTCGCGCACACT 59.433 61.111 8.75 0.00 0.00 3.55
1347 1385 2.494530 GCCAAGCCACCGGTTTTCA 61.495 57.895 2.97 0.00 0.00 2.69
1452 1490 2.581354 CCGCAGAACCTCCTCCTG 59.419 66.667 0.00 0.00 0.00 3.86
2145 2186 2.414824 GCTGACGATATCGGTGGAGATC 60.415 54.545 27.58 14.90 44.95 2.75
2199 2240 3.133014 CGGCTGGAGATGGACGAT 58.867 61.111 0.00 0.00 35.81 3.73
2244 2291 2.102252 GGATCAGTTGAGGGTAGAGCTG 59.898 54.545 0.00 0.00 0.00 4.24
2345 2399 3.302699 CAGCTTAACTAGTTAACGGACGC 59.697 47.826 21.52 21.01 32.26 5.19
2351 2405 7.510428 TTAACTAGTTAACGGACGCATAAAG 57.490 36.000 21.52 0.00 30.78 1.85
2352 2406 4.427312 ACTAGTTAACGGACGCATAAAGG 58.573 43.478 0.00 0.00 0.00 3.11
2444 2515 2.873170 TTTGACGAAATGTAGCAGCG 57.127 45.000 0.00 0.00 0.00 5.18
2445 2516 0.442310 TTGACGAAATGTAGCAGCGC 59.558 50.000 0.00 0.00 0.00 5.92
2446 2517 0.389817 TGACGAAATGTAGCAGCGCT 60.390 50.000 2.64 2.64 43.41 5.92
2447 2518 1.135228 TGACGAAATGTAGCAGCGCTA 60.135 47.619 10.99 0.00 40.44 4.26
2457 2528 2.099141 AGCAGCGCTACTTTCATTCA 57.901 45.000 10.99 0.00 36.99 2.57
2458 2529 2.636830 AGCAGCGCTACTTTCATTCAT 58.363 42.857 10.99 0.00 36.99 2.57
2459 2530 3.012518 AGCAGCGCTACTTTCATTCATT 58.987 40.909 10.99 0.00 36.99 2.57
2460 2531 4.191544 AGCAGCGCTACTTTCATTCATTA 58.808 39.130 10.99 0.00 36.99 1.90
2461 2532 4.635765 AGCAGCGCTACTTTCATTCATTAA 59.364 37.500 10.99 0.00 36.99 1.40
2462 2533 4.966366 GCAGCGCTACTTTCATTCATTAAG 59.034 41.667 10.99 0.00 0.00 1.85
2463 2534 5.220662 GCAGCGCTACTTTCATTCATTAAGA 60.221 40.000 10.99 0.00 0.00 2.10
2464 2535 6.675486 GCAGCGCTACTTTCATTCATTAAGAA 60.675 38.462 10.99 0.00 41.28 2.52
2465 2536 6.904011 CAGCGCTACTTTCATTCATTAAGAAG 59.096 38.462 10.99 0.00 40.15 2.85
2466 2537 6.818644 AGCGCTACTTTCATTCATTAAGAAGA 59.181 34.615 8.99 0.00 40.15 2.87
2467 2538 7.010923 AGCGCTACTTTCATTCATTAAGAAGAG 59.989 37.037 8.99 0.00 40.15 2.85
2468 2539 7.625553 CGCTACTTTCATTCATTAAGAAGAGG 58.374 38.462 0.00 0.00 40.15 3.69
2469 2540 7.492669 CGCTACTTTCATTCATTAAGAAGAGGA 59.507 37.037 0.00 0.00 40.15 3.71
2470 2541 8.825745 GCTACTTTCATTCATTAAGAAGAGGAG 58.174 37.037 0.00 0.00 40.15 3.69
2471 2542 7.622893 ACTTTCATTCATTAAGAAGAGGAGC 57.377 36.000 0.00 0.00 40.15 4.70
2472 2543 6.601217 ACTTTCATTCATTAAGAAGAGGAGCC 59.399 38.462 0.00 0.00 40.15 4.70
2473 2544 4.697514 TCATTCATTAAGAAGAGGAGCCG 58.302 43.478 0.00 0.00 40.15 5.52
2474 2545 3.543680 TTCATTAAGAAGAGGAGCCGG 57.456 47.619 0.00 0.00 0.00 6.13
2475 2546 1.139058 TCATTAAGAAGAGGAGCCGGC 59.861 52.381 21.89 21.89 0.00 6.13
2476 2547 1.134401 CATTAAGAAGAGGAGCCGGCA 60.134 52.381 31.54 2.48 0.00 5.69
2477 2548 0.537188 TTAAGAAGAGGAGCCGGCAG 59.463 55.000 31.54 0.00 0.00 4.85
2478 2549 0.324368 TAAGAAGAGGAGCCGGCAGA 60.324 55.000 31.54 0.00 0.00 4.26
2479 2550 1.612395 AAGAAGAGGAGCCGGCAGAG 61.612 60.000 31.54 0.00 0.00 3.35
2480 2551 3.731653 GAAGAGGAGCCGGCAGAGC 62.732 68.421 31.54 15.26 0.00 4.09
2492 2563 1.448985 GGCAGAGCCGTGAAATTACA 58.551 50.000 0.00 0.00 39.62 2.41
2493 2564 1.398390 GGCAGAGCCGTGAAATTACAG 59.602 52.381 0.00 0.00 39.62 2.74
2494 2565 1.398390 GCAGAGCCGTGAAATTACAGG 59.602 52.381 0.00 0.00 0.00 4.00
2495 2566 2.009774 CAGAGCCGTGAAATTACAGGG 58.990 52.381 0.00 0.00 45.17 4.45
2496 2567 1.065418 AGAGCCGTGAAATTACAGGGG 60.065 52.381 0.00 0.00 43.38 4.79
2497 2568 0.988832 AGCCGTGAAATTACAGGGGA 59.011 50.000 0.00 0.00 43.38 4.81
2498 2569 1.353022 AGCCGTGAAATTACAGGGGAA 59.647 47.619 0.00 0.00 43.38 3.97
2499 2570 2.025321 AGCCGTGAAATTACAGGGGAAT 60.025 45.455 0.00 0.00 43.38 3.01
2500 2571 2.099098 GCCGTGAAATTACAGGGGAATG 59.901 50.000 0.00 0.00 43.38 2.67
2501 2572 2.099098 CCGTGAAATTACAGGGGAATGC 59.901 50.000 0.00 0.00 40.68 3.56
2502 2573 2.752354 CGTGAAATTACAGGGGAATGCA 59.248 45.455 0.00 0.00 0.00 3.96
2503 2574 3.192422 CGTGAAATTACAGGGGAATGCAA 59.808 43.478 0.00 0.00 0.00 4.08
2504 2575 4.321601 CGTGAAATTACAGGGGAATGCAAA 60.322 41.667 0.00 0.00 0.00 3.68
2505 2576 5.546526 GTGAAATTACAGGGGAATGCAAAA 58.453 37.500 0.00 0.00 0.00 2.44
2506 2577 5.994668 GTGAAATTACAGGGGAATGCAAAAA 59.005 36.000 0.00 0.00 0.00 1.94
2507 2578 6.654582 GTGAAATTACAGGGGAATGCAAAAAT 59.345 34.615 0.00 0.00 0.00 1.82
2508 2579 6.654161 TGAAATTACAGGGGAATGCAAAAATG 59.346 34.615 0.00 0.00 0.00 2.32
2509 2580 6.371595 AATTACAGGGGAATGCAAAAATGA 57.628 33.333 0.00 0.00 0.00 2.57
2510 2581 3.967332 ACAGGGGAATGCAAAAATGAG 57.033 42.857 0.00 0.00 0.00 2.90
2511 2582 3.509442 ACAGGGGAATGCAAAAATGAGA 58.491 40.909 0.00 0.00 0.00 3.27
2512 2583 3.512724 ACAGGGGAATGCAAAAATGAGAG 59.487 43.478 0.00 0.00 0.00 3.20
2513 2584 3.102204 AGGGGAATGCAAAAATGAGAGG 58.898 45.455 0.00 0.00 0.00 3.69
2514 2585 2.419159 GGGGAATGCAAAAATGAGAGGC 60.419 50.000 0.00 0.00 0.00 4.70
2515 2586 2.234414 GGGAATGCAAAAATGAGAGGCA 59.766 45.455 0.00 0.00 39.03 4.75
2516 2587 3.306919 GGGAATGCAAAAATGAGAGGCAA 60.307 43.478 0.00 0.00 38.08 4.52
2517 2588 4.510571 GGAATGCAAAAATGAGAGGCAAT 58.489 39.130 0.00 0.00 38.08 3.56
2518 2589 5.395546 GGGAATGCAAAAATGAGAGGCAATA 60.396 40.000 0.00 0.00 38.08 1.90
2519 2590 6.285990 GGAATGCAAAAATGAGAGGCAATAT 58.714 36.000 0.00 0.00 38.08 1.28
2520 2591 6.764560 GGAATGCAAAAATGAGAGGCAATATT 59.235 34.615 0.00 0.00 38.08 1.28
2521 2592 7.927629 GGAATGCAAAAATGAGAGGCAATATTA 59.072 33.333 0.00 0.00 38.08 0.98
2522 2593 8.652810 AATGCAAAAATGAGAGGCAATATTAC 57.347 30.769 0.00 0.00 38.08 1.89
2523 2594 7.167924 TGCAAAAATGAGAGGCAATATTACA 57.832 32.000 0.00 0.00 0.00 2.41
2524 2595 7.035004 TGCAAAAATGAGAGGCAATATTACAC 58.965 34.615 0.00 0.00 0.00 2.90
2525 2596 6.476706 GCAAAAATGAGAGGCAATATTACACC 59.523 38.462 0.00 0.00 0.00 4.16
2526 2597 7.546358 CAAAAATGAGAGGCAATATTACACCA 58.454 34.615 4.64 0.00 0.00 4.17
2527 2598 6.699575 AAATGAGAGGCAATATTACACCAC 57.300 37.500 4.64 0.00 0.00 4.16
2528 2599 5.636903 ATGAGAGGCAATATTACACCACT 57.363 39.130 4.64 3.47 0.00 4.00
2529 2600 4.769688 TGAGAGGCAATATTACACCACTG 58.230 43.478 6.17 0.00 0.00 3.66
2530 2601 4.469586 TGAGAGGCAATATTACACCACTGA 59.530 41.667 6.17 0.00 0.00 3.41
2531 2602 5.045942 TGAGAGGCAATATTACACCACTGAA 60.046 40.000 6.17 0.00 0.00 3.02
2532 2603 5.186198 AGAGGCAATATTACACCACTGAAC 58.814 41.667 4.64 0.00 0.00 3.18
2533 2604 4.917385 AGGCAATATTACACCACTGAACA 58.083 39.130 4.64 0.00 0.00 3.18
2534 2605 4.700213 AGGCAATATTACACCACTGAACAC 59.300 41.667 4.64 0.00 0.00 3.32
2535 2606 4.457603 GGCAATATTACACCACTGAACACA 59.542 41.667 0.00 0.00 0.00 3.72
2536 2607 5.048364 GGCAATATTACACCACTGAACACAA 60.048 40.000 0.00 0.00 0.00 3.33
2537 2608 5.856455 GCAATATTACACCACTGAACACAAC 59.144 40.000 0.00 0.00 0.00 3.32
2538 2609 6.514212 GCAATATTACACCACTGAACACAACA 60.514 38.462 0.00 0.00 0.00 3.33
2539 2610 7.421599 CAATATTACACCACTGAACACAACAA 58.578 34.615 0.00 0.00 0.00 2.83
2540 2611 5.906113 ATTACACCACTGAACACAACAAA 57.094 34.783 0.00 0.00 0.00 2.83
2541 2612 5.707242 TTACACCACTGAACACAACAAAA 57.293 34.783 0.00 0.00 0.00 2.44
2542 2613 4.592485 ACACCACTGAACACAACAAAAA 57.408 36.364 0.00 0.00 0.00 1.94
2565 2636 8.661352 AAAAGAAAGAGAGAAGAAGAGAACAG 57.339 34.615 0.00 0.00 0.00 3.16
2566 2637 5.783111 AGAAAGAGAGAAGAAGAGAACAGC 58.217 41.667 0.00 0.00 0.00 4.40
2567 2638 5.539955 AGAAAGAGAGAAGAAGAGAACAGCT 59.460 40.000 0.00 0.00 0.00 4.24
2568 2639 4.789012 AGAGAGAAGAAGAGAACAGCTG 57.211 45.455 13.48 13.48 0.00 4.24
2569 2640 3.511146 AGAGAGAAGAAGAGAACAGCTGG 59.489 47.826 19.93 0.00 0.00 4.85
2570 2641 2.566724 AGAGAAGAAGAGAACAGCTGGG 59.433 50.000 19.93 0.00 0.00 4.45
2571 2642 2.301583 GAGAAGAAGAGAACAGCTGGGT 59.698 50.000 19.93 5.09 0.00 4.51
2572 2643 2.301583 AGAAGAAGAGAACAGCTGGGTC 59.698 50.000 19.93 14.77 0.00 4.46
2573 2644 0.605589 AGAAGAGAACAGCTGGGTCG 59.394 55.000 19.93 0.00 0.00 4.79
2574 2645 0.603569 GAAGAGAACAGCTGGGTCGA 59.396 55.000 19.93 0.00 0.00 4.20
2575 2646 0.605589 AAGAGAACAGCTGGGTCGAG 59.394 55.000 19.93 0.00 0.00 4.04
2576 2647 1.216710 GAGAACAGCTGGGTCGAGG 59.783 63.158 19.93 0.00 0.00 4.63
2577 2648 2.435059 GAACAGCTGGGTCGAGGC 60.435 66.667 19.93 0.00 0.00 4.70
2578 2649 4.379243 AACAGCTGGGTCGAGGCG 62.379 66.667 19.93 0.00 0.00 5.52
2588 2659 2.434185 TCGAGGCGACAACATGGC 60.434 61.111 0.00 0.00 0.00 4.40
2589 2660 2.741985 CGAGGCGACAACATGGCA 60.742 61.111 0.00 0.00 32.68 4.92
2590 2661 2.324330 CGAGGCGACAACATGGCAA 61.324 57.895 0.00 0.00 32.68 4.52
2591 2662 1.851021 CGAGGCGACAACATGGCAAA 61.851 55.000 0.00 0.00 32.68 3.68
2592 2663 0.527565 GAGGCGACAACATGGCAAAT 59.472 50.000 0.00 0.00 32.68 2.32
2593 2664 0.244450 AGGCGACAACATGGCAAATG 59.756 50.000 0.00 0.00 32.68 2.32
2594 2665 1.353609 GGCGACAACATGGCAAATGC 61.354 55.000 0.00 0.00 41.14 3.56
2608 2679 4.132529 GCAAATGCCGAAAAGAAAAAGG 57.867 40.909 0.00 0.00 34.31 3.11
2609 2680 3.807071 GCAAATGCCGAAAAGAAAAAGGA 59.193 39.130 0.00 0.00 34.31 3.36
2610 2681 4.318760 GCAAATGCCGAAAAGAAAAAGGAC 60.319 41.667 0.00 0.00 34.31 3.85
2611 2682 3.660501 ATGCCGAAAAGAAAAAGGACC 57.339 42.857 0.00 0.00 0.00 4.46
2612 2683 2.379972 TGCCGAAAAGAAAAAGGACCA 58.620 42.857 0.00 0.00 0.00 4.02
2613 2684 2.761208 TGCCGAAAAGAAAAAGGACCAA 59.239 40.909 0.00 0.00 0.00 3.67
2614 2685 3.195825 TGCCGAAAAGAAAAAGGACCAAA 59.804 39.130 0.00 0.00 0.00 3.28
2615 2686 3.802139 GCCGAAAAGAAAAAGGACCAAAG 59.198 43.478 0.00 0.00 0.00 2.77
2616 2687 4.679639 GCCGAAAAGAAAAAGGACCAAAGT 60.680 41.667 0.00 0.00 0.00 2.66
2617 2688 4.803613 CCGAAAAGAAAAAGGACCAAAGTG 59.196 41.667 0.00 0.00 0.00 3.16
2618 2689 4.267690 CGAAAAGAAAAAGGACCAAAGTGC 59.732 41.667 0.00 0.00 33.83 4.40
2619 2690 3.819564 AAGAAAAAGGACCAAAGTGCC 57.180 42.857 0.00 0.00 34.22 5.01
2620 2691 2.745968 AGAAAAAGGACCAAAGTGCCA 58.254 42.857 0.00 0.00 34.22 4.92
2621 2692 3.308401 AGAAAAAGGACCAAAGTGCCAT 58.692 40.909 0.00 0.00 34.22 4.40
2622 2693 3.321968 AGAAAAAGGACCAAAGTGCCATC 59.678 43.478 0.00 0.00 34.22 3.51
2623 2694 2.380064 AAAGGACCAAAGTGCCATCA 57.620 45.000 0.00 0.00 34.22 3.07
2624 2695 2.610438 AAGGACCAAAGTGCCATCAT 57.390 45.000 0.00 0.00 34.22 2.45
2625 2696 2.134789 AGGACCAAAGTGCCATCATC 57.865 50.000 0.00 0.00 34.22 2.92
2626 2697 1.637553 AGGACCAAAGTGCCATCATCT 59.362 47.619 0.00 0.00 34.22 2.90
2627 2698 2.042162 AGGACCAAAGTGCCATCATCTT 59.958 45.455 0.00 0.00 34.22 2.40
2628 2699 2.424956 GGACCAAAGTGCCATCATCTTC 59.575 50.000 0.00 0.00 0.00 2.87
2629 2700 2.424956 GACCAAAGTGCCATCATCTTCC 59.575 50.000 0.00 0.00 0.00 3.46
2630 2701 2.225091 ACCAAAGTGCCATCATCTTCCA 60.225 45.455 0.00 0.00 0.00 3.53
2631 2702 3.028850 CCAAAGTGCCATCATCTTCCAT 58.971 45.455 0.00 0.00 0.00 3.41
2632 2703 3.449737 CCAAAGTGCCATCATCTTCCATT 59.550 43.478 0.00 0.00 0.00 3.16
2633 2704 4.430007 CAAAGTGCCATCATCTTCCATTG 58.570 43.478 0.00 0.00 0.00 2.82
2634 2705 3.377253 AGTGCCATCATCTTCCATTGT 57.623 42.857 0.00 0.00 0.00 2.71
2635 2706 3.705051 AGTGCCATCATCTTCCATTGTT 58.295 40.909 0.00 0.00 0.00 2.83
2636 2707 3.698040 AGTGCCATCATCTTCCATTGTTC 59.302 43.478 0.00 0.00 0.00 3.18
2637 2708 3.698040 GTGCCATCATCTTCCATTGTTCT 59.302 43.478 0.00 0.00 0.00 3.01
2638 2709 3.949754 TGCCATCATCTTCCATTGTTCTC 59.050 43.478 0.00 0.00 0.00 2.87
2639 2710 3.949754 GCCATCATCTTCCATTGTTCTCA 59.050 43.478 0.00 0.00 0.00 3.27
2640 2711 4.201990 GCCATCATCTTCCATTGTTCTCAC 60.202 45.833 0.00 0.00 0.00 3.51
2641 2712 4.337555 CCATCATCTTCCATTGTTCTCACC 59.662 45.833 0.00 0.00 0.00 4.02
2642 2713 4.639078 TCATCTTCCATTGTTCTCACCA 57.361 40.909 0.00 0.00 0.00 4.17
2643 2714 4.984295 TCATCTTCCATTGTTCTCACCAA 58.016 39.130 0.00 0.00 0.00 3.67
2644 2715 5.573219 TCATCTTCCATTGTTCTCACCAAT 58.427 37.500 0.00 0.00 32.88 3.16
2645 2716 5.416639 TCATCTTCCATTGTTCTCACCAATG 59.583 40.000 6.22 6.22 45.56 2.82
2654 2725 2.356278 TCACCAATGAGGGGCTGC 59.644 61.111 0.00 0.00 42.23 5.25
2655 2726 2.036098 CACCAATGAGGGGCTGCA 59.964 61.111 0.50 0.00 43.89 4.41
2656 2727 1.380785 CACCAATGAGGGGCTGCAT 60.381 57.895 0.50 0.00 43.89 3.96
2657 2728 1.380785 ACCAATGAGGGGCTGCATG 60.381 57.895 0.50 0.00 43.89 4.06
2658 2729 1.076559 CCAATGAGGGGCTGCATGA 60.077 57.895 0.50 0.00 0.00 3.07
2659 2730 1.107538 CCAATGAGGGGCTGCATGAG 61.108 60.000 0.50 0.00 0.00 2.90
2660 2731 1.107538 CAATGAGGGGCTGCATGAGG 61.108 60.000 0.50 0.00 0.00 3.86
2661 2732 1.284111 AATGAGGGGCTGCATGAGGA 61.284 55.000 0.50 0.00 0.00 3.71
2662 2733 1.284111 ATGAGGGGCTGCATGAGGAA 61.284 55.000 0.50 0.00 0.00 3.36
2663 2734 1.452833 GAGGGGCTGCATGAGGAAC 60.453 63.158 0.50 0.00 0.00 3.62
2664 2735 2.202236 GAGGGGCTGCATGAGGAACA 62.202 60.000 0.50 0.00 0.00 3.18
2665 2736 2.048603 GGGGCTGCATGAGGAACAC 61.049 63.158 0.50 0.00 0.00 3.32
2666 2737 2.048603 GGGCTGCATGAGGAACACC 61.049 63.158 0.50 0.00 0.00 4.16
2667 2738 1.303561 GGCTGCATGAGGAACACCA 60.304 57.895 0.50 0.00 0.00 4.17
2668 2739 1.589716 GGCTGCATGAGGAACACCAC 61.590 60.000 0.50 0.00 0.00 4.16
2669 2740 1.589716 GCTGCATGAGGAACACCACC 61.590 60.000 0.00 0.00 0.00 4.61
2670 2741 0.250858 CTGCATGAGGAACACCACCA 60.251 55.000 0.00 0.00 0.00 4.17
2671 2742 0.537143 TGCATGAGGAACACCACCAC 60.537 55.000 0.00 0.00 0.00 4.16
2672 2743 1.244019 GCATGAGGAACACCACCACC 61.244 60.000 0.00 0.00 0.00 4.61
2673 2744 0.955428 CATGAGGAACACCACCACCG 60.955 60.000 0.00 0.00 0.00 4.94
2674 2745 2.668550 GAGGAACACCACCACCGC 60.669 66.667 0.00 0.00 0.00 5.68
2675 2746 3.469863 GAGGAACACCACCACCGCA 62.470 63.158 0.00 0.00 0.00 5.69
2676 2747 2.978010 GGAACACCACCACCGCAG 60.978 66.667 0.00 0.00 0.00 5.18
2677 2748 2.110213 GAACACCACCACCGCAGA 59.890 61.111 0.00 0.00 0.00 4.26
2678 2749 2.203153 AACACCACCACCGCAGAC 60.203 61.111 0.00 0.00 0.00 3.51
2679 2750 4.602259 ACACCACCACCGCAGACG 62.602 66.667 0.00 0.00 39.67 4.18
2680 2751 4.293648 CACCACCACCGCAGACGA 62.294 66.667 0.00 0.00 43.93 4.20
2681 2752 3.542676 ACCACCACCGCAGACGAA 61.543 61.111 0.00 0.00 43.93 3.85
2682 2753 2.738521 CCACCACCGCAGACGAAG 60.739 66.667 0.00 0.00 43.93 3.79
2683 2754 2.338620 CACCACCGCAGACGAAGA 59.661 61.111 0.00 0.00 43.93 2.87
2684 2755 1.734477 CACCACCGCAGACGAAGAG 60.734 63.158 0.00 0.00 43.93 2.85
2685 2756 2.811317 CCACCGCAGACGAAGAGC 60.811 66.667 0.00 0.00 43.93 4.09
2686 2757 2.259818 CACCGCAGACGAAGAGCT 59.740 61.111 0.00 0.00 43.93 4.09
2687 2758 1.803519 CACCGCAGACGAAGAGCTC 60.804 63.158 5.27 5.27 43.93 4.09
2688 2759 2.202676 CCGCAGACGAAGAGCTCC 60.203 66.667 10.93 0.00 43.93 4.70
2689 2760 2.202676 CGCAGACGAAGAGCTCCC 60.203 66.667 10.93 1.46 43.93 4.30
2690 2761 2.973899 GCAGACGAAGAGCTCCCA 59.026 61.111 10.93 0.00 0.00 4.37
2691 2762 1.519719 GCAGACGAAGAGCTCCCAT 59.480 57.895 10.93 0.00 0.00 4.00
2692 2763 0.529555 GCAGACGAAGAGCTCCCATC 60.530 60.000 10.93 5.90 0.00 3.51
2693 2764 0.820226 CAGACGAAGAGCTCCCATCA 59.180 55.000 10.93 0.00 0.00 3.07
2694 2765 1.205655 CAGACGAAGAGCTCCCATCAA 59.794 52.381 10.93 0.00 0.00 2.57
2695 2766 1.205893 AGACGAAGAGCTCCCATCAAC 59.794 52.381 10.93 4.02 0.00 3.18
2696 2767 0.250513 ACGAAGAGCTCCCATCAACC 59.749 55.000 10.93 0.00 0.00 3.77
2697 2768 0.807667 CGAAGAGCTCCCATCAACCG 60.808 60.000 10.93 0.00 0.00 4.44
2698 2769 0.537188 GAAGAGCTCCCATCAACCGA 59.463 55.000 10.93 0.00 0.00 4.69
2699 2770 0.539051 AAGAGCTCCCATCAACCGAG 59.461 55.000 10.93 0.00 0.00 4.63
2700 2771 0.324738 AGAGCTCCCATCAACCGAGA 60.325 55.000 10.93 0.00 0.00 4.04
2701 2772 0.179097 GAGCTCCCATCAACCGAGAC 60.179 60.000 0.87 0.00 0.00 3.36
2702 2773 1.153349 GCTCCCATCAACCGAGACC 60.153 63.158 0.00 0.00 0.00 3.85
2703 2774 1.899437 GCTCCCATCAACCGAGACCA 61.899 60.000 0.00 0.00 0.00 4.02
2704 2775 0.833287 CTCCCATCAACCGAGACCAT 59.167 55.000 0.00 0.00 0.00 3.55
2705 2776 0.830648 TCCCATCAACCGAGACCATC 59.169 55.000 0.00 0.00 0.00 3.51
2706 2777 0.179045 CCCATCAACCGAGACCATCC 60.179 60.000 0.00 0.00 0.00 3.51
2707 2778 0.541392 CCATCAACCGAGACCATCCA 59.459 55.000 0.00 0.00 0.00 3.41
2708 2779 1.141657 CCATCAACCGAGACCATCCAT 59.858 52.381 0.00 0.00 0.00 3.41
2709 2780 2.216046 CATCAACCGAGACCATCCATG 58.784 52.381 0.00 0.00 0.00 3.66
2710 2781 1.567357 TCAACCGAGACCATCCATGA 58.433 50.000 0.00 0.00 0.00 3.07
2711 2782 2.118679 TCAACCGAGACCATCCATGAT 58.881 47.619 0.00 0.00 0.00 2.45
2712 2783 2.158914 TCAACCGAGACCATCCATGATG 60.159 50.000 0.00 0.00 39.52 3.07
2713 2784 0.107456 ACCGAGACCATCCATGATGC 59.893 55.000 0.00 0.00 38.59 3.91
2714 2785 0.604780 CCGAGACCATCCATGATGCC 60.605 60.000 0.00 0.00 38.59 4.40
2715 2786 0.395686 CGAGACCATCCATGATGCCT 59.604 55.000 0.00 0.00 38.59 4.75
2716 2787 1.607509 CGAGACCATCCATGATGCCTC 60.608 57.143 0.00 11.44 38.59 4.70
2717 2788 1.419012 GAGACCATCCATGATGCCTCA 59.581 52.381 14.38 0.00 38.59 3.86
2718 2789 1.848388 AGACCATCCATGATGCCTCAA 59.152 47.619 0.00 0.00 38.59 3.02
2719 2790 2.158652 AGACCATCCATGATGCCTCAAG 60.159 50.000 0.00 0.00 38.59 3.02
2720 2791 1.133575 ACCATCCATGATGCCTCAAGG 60.134 52.381 6.90 6.90 40.83 3.61
2731 2802 3.575506 CCTCAAGGCTATTGGTGCA 57.424 52.632 0.00 0.00 0.00 4.57
2732 2803 1.386533 CCTCAAGGCTATTGGTGCAG 58.613 55.000 0.00 0.00 0.00 4.41
2733 2804 0.737219 CTCAAGGCTATTGGTGCAGC 59.263 55.000 9.47 9.47 37.05 5.25
2737 2808 3.903783 GCTATTGGTGCAGCCGAA 58.096 55.556 14.36 1.83 41.21 4.30
2738 2809 1.723870 GCTATTGGTGCAGCCGAAG 59.276 57.895 14.36 8.64 41.21 3.79
2757 2828 2.853914 GCAACGAGCAACCGAGTC 59.146 61.111 0.00 0.00 44.79 3.36
2758 2829 2.668280 GCAACGAGCAACCGAGTCC 61.668 63.158 0.00 0.00 44.79 3.85
2759 2830 1.300620 CAACGAGCAACCGAGTCCA 60.301 57.895 0.00 0.00 0.00 4.02
2760 2831 1.300697 AACGAGCAACCGAGTCCAC 60.301 57.895 0.00 0.00 0.00 4.02
2761 2832 2.023414 AACGAGCAACCGAGTCCACA 62.023 55.000 0.00 0.00 0.00 4.17
2762 2833 2.022129 CGAGCAACCGAGTCCACAC 61.022 63.158 0.00 0.00 0.00 3.82
2763 2834 1.668151 GAGCAACCGAGTCCACACC 60.668 63.158 0.00 0.00 0.00 4.16
2764 2835 2.668550 GCAACCGAGTCCACACCC 60.669 66.667 0.00 0.00 0.00 4.61
2765 2836 2.357034 CAACCGAGTCCACACCCG 60.357 66.667 0.00 0.00 0.00 5.28
2766 2837 3.622826 AACCGAGTCCACACCCGG 61.623 66.667 0.00 0.00 46.65 5.73
2767 2838 4.608774 ACCGAGTCCACACCCGGA 62.609 66.667 0.73 0.00 44.29 5.14
2772 2843 2.048503 GTCCACACCCGGACGAAG 60.049 66.667 0.73 0.00 45.77 3.79
2773 2844 3.307906 TCCACACCCGGACGAAGG 61.308 66.667 0.73 0.00 0.00 3.46
2779 2850 4.338710 CCCGGACGAAGGGCCAAA 62.339 66.667 6.18 0.00 42.77 3.28
2780 2851 3.053896 CCGGACGAAGGGCCAAAC 61.054 66.667 6.18 0.00 0.00 2.93
2781 2852 3.419759 CGGACGAAGGGCCAAACG 61.420 66.667 6.18 10.92 0.00 3.60
2782 2853 3.733960 GGACGAAGGGCCAAACGC 61.734 66.667 6.18 4.83 0.00 4.84
2783 2854 2.975799 GACGAAGGGCCAAACGCA 60.976 61.111 6.18 0.00 40.31 5.24
2784 2855 2.517402 ACGAAGGGCCAAACGCAA 60.517 55.556 6.18 0.00 40.31 4.85
2785 2856 2.050442 CGAAGGGCCAAACGCAAC 60.050 61.111 6.18 0.00 40.31 4.17
2786 2857 2.338620 GAAGGGCCAAACGCAACC 59.661 61.111 6.18 0.00 40.31 3.77
2787 2858 3.551887 GAAGGGCCAAACGCAACCG 62.552 63.158 6.18 0.00 40.31 4.44
2788 2859 4.572571 AGGGCCAAACGCAACCGA 62.573 61.111 6.18 0.00 40.31 4.69
2789 2860 4.038080 GGGCCAAACGCAACCGAG 62.038 66.667 4.39 0.00 40.31 4.63
2790 2861 4.038080 GGCCAAACGCAACCGAGG 62.038 66.667 0.00 0.00 40.31 4.63
2791 2862 4.700365 GCCAAACGCAACCGAGGC 62.700 66.667 0.00 0.00 40.69 4.70
2792 2863 2.978010 CCAAACGCAACCGAGGCT 60.978 61.111 0.00 0.00 38.29 4.58
2793 2864 1.669760 CCAAACGCAACCGAGGCTA 60.670 57.895 0.00 0.00 38.29 3.93
2794 2865 1.495951 CAAACGCAACCGAGGCTAC 59.504 57.895 0.00 0.00 38.29 3.58
2795 2866 1.070105 AAACGCAACCGAGGCTACA 59.930 52.632 0.00 0.00 38.29 2.74
2796 2867 0.533308 AAACGCAACCGAGGCTACAA 60.533 50.000 0.00 0.00 38.29 2.41
2797 2868 1.226030 AACGCAACCGAGGCTACAAC 61.226 55.000 0.00 0.00 38.29 3.32
2798 2869 1.666553 CGCAACCGAGGCTACAACA 60.667 57.895 0.00 0.00 36.29 3.33
2799 2870 1.866925 GCAACCGAGGCTACAACAC 59.133 57.895 0.00 0.00 0.00 3.32
2800 2871 0.882927 GCAACCGAGGCTACAACACA 60.883 55.000 0.00 0.00 0.00 3.72
2801 2872 1.588674 CAACCGAGGCTACAACACAA 58.411 50.000 0.00 0.00 0.00 3.33
2802 2873 1.263217 CAACCGAGGCTACAACACAAC 59.737 52.381 0.00 0.00 0.00 3.32
2803 2874 0.466543 ACCGAGGCTACAACACAACA 59.533 50.000 0.00 0.00 0.00 3.33
2804 2875 1.148310 CCGAGGCTACAACACAACAG 58.852 55.000 0.00 0.00 0.00 3.16
2805 2876 0.512952 CGAGGCTACAACACAACAGC 59.487 55.000 0.00 0.00 0.00 4.40
2806 2877 0.512952 GAGGCTACAACACAACAGCG 59.487 55.000 0.00 0.00 34.80 5.18
2807 2878 0.884704 AGGCTACAACACAACAGCGG 60.885 55.000 0.00 0.00 34.80 5.52
2808 2879 1.082104 GCTACAACACAACAGCGGC 60.082 57.895 0.00 0.00 0.00 6.53
2809 2880 1.781025 GCTACAACACAACAGCGGCA 61.781 55.000 1.45 0.00 0.00 5.69
2810 2881 0.041312 CTACAACACAACAGCGGCAC 60.041 55.000 1.45 0.00 0.00 5.01
2811 2882 1.440938 TACAACACAACAGCGGCACC 61.441 55.000 1.45 0.00 0.00 5.01
2812 2883 3.582120 AACACAACAGCGGCACCG 61.582 61.111 4.30 4.30 43.09 4.94
2841 2912 3.165606 CGAAGGGCATCAAAGAGCT 57.834 52.632 0.00 0.00 0.00 4.09
2842 2913 0.731417 CGAAGGGCATCAAAGAGCTG 59.269 55.000 0.00 0.00 0.00 4.24
2843 2914 1.676916 CGAAGGGCATCAAAGAGCTGA 60.677 52.381 0.00 0.00 0.00 4.26
2844 2915 2.015587 GAAGGGCATCAAAGAGCTGAG 58.984 52.381 0.00 0.00 0.00 3.35
2845 2916 0.990374 AGGGCATCAAAGAGCTGAGT 59.010 50.000 0.00 0.00 0.00 3.41
2846 2917 1.065564 AGGGCATCAAAGAGCTGAGTC 60.066 52.381 0.00 0.00 0.00 3.36
2847 2918 1.377536 GGCATCAAAGAGCTGAGTCC 58.622 55.000 0.00 0.00 0.00 3.85
2848 2919 1.339438 GGCATCAAAGAGCTGAGTCCA 60.339 52.381 0.00 0.00 0.00 4.02
2849 2920 2.641305 GCATCAAAGAGCTGAGTCCAT 58.359 47.619 0.00 0.00 0.00 3.41
2850 2921 3.015327 GCATCAAAGAGCTGAGTCCATT 58.985 45.455 0.00 0.00 0.00 3.16
2851 2922 3.181499 GCATCAAAGAGCTGAGTCCATTG 60.181 47.826 0.00 0.00 0.00 2.82
2852 2923 4.259356 CATCAAAGAGCTGAGTCCATTGA 58.741 43.478 0.00 0.00 31.23 2.57
2853 2924 3.935315 TCAAAGAGCTGAGTCCATTGAG 58.065 45.455 0.00 0.00 0.00 3.02
2854 2925 3.326006 TCAAAGAGCTGAGTCCATTGAGT 59.674 43.478 0.00 0.00 0.00 3.41
2855 2926 4.528206 TCAAAGAGCTGAGTCCATTGAGTA 59.472 41.667 0.00 0.00 0.00 2.59
2856 2927 5.012046 TCAAAGAGCTGAGTCCATTGAGTAA 59.988 40.000 0.00 0.00 0.00 2.24
2857 2928 4.734398 AGAGCTGAGTCCATTGAGTAAG 57.266 45.455 0.00 0.00 0.00 2.34
2878 2949 4.475345 AGTATACACCTTTTTGGGCAACA 58.525 39.130 5.50 0.00 41.11 3.33
2894 2965 5.107133 GGGCAACAATCTGAATTCATTGAG 58.893 41.667 22.57 16.34 34.60 3.02
2931 3002 7.099120 TGTAGGACCTACGAAATTAAGAAACC 58.901 38.462 23.64 0.00 39.58 3.27
2937 3008 6.482973 ACCTACGAAATTAAGAAACCGAAACA 59.517 34.615 0.00 0.00 0.00 2.83
2954 3025 4.502604 CGAAACAAAGTTCTACTCCCTCCA 60.503 45.833 0.00 0.00 0.00 3.86
2964 3035 5.796502 TCTACTCCCTCCATTCCAAAATT 57.203 39.130 0.00 0.00 0.00 1.82
2965 3036 5.755849 TCTACTCCCTCCATTCCAAAATTC 58.244 41.667 0.00 0.00 0.00 2.17
3068 3142 8.232497 TCGAATTAGCTTCATTAGATTCATCG 57.768 34.615 0.00 0.00 33.10 3.84
3196 3773 4.189231 GGAACGGAGCAAGTATGTATGTT 58.811 43.478 0.00 0.00 0.00 2.71
3261 3838 7.119553 GTGTTTATCCAACTTTAATCGGTGGTA 59.880 37.037 8.66 0.74 36.21 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 1.747355 GACGTCCCGGAAGTTCATCTA 59.253 52.381 0.73 0.00 0.00 1.98
178 179 0.460284 ACATGGTTCGCACGATCCTC 60.460 55.000 18.17 0.59 35.58 3.71
183 184 2.024868 CCGAACATGGTTCGCACGA 61.025 57.895 22.13 0.00 40.30 4.35
190 191 2.629656 GCTGCTGCCGAACATGGTT 61.630 57.895 3.85 0.00 0.00 3.67
239 240 3.650950 ACCACTCCGCCATGGCTT 61.651 61.111 33.07 12.82 39.84 4.35
304 307 1.371558 GGTGCCTTGTCGTCCTCTT 59.628 57.895 0.00 0.00 0.00 2.85
471 476 3.435671 CCGTCATCATCATCACCATCATG 59.564 47.826 0.00 0.00 0.00 3.07
692 713 2.434884 GTAGCTTCAGCAGGCGCA 60.435 61.111 10.83 0.00 45.16 6.09
784 809 0.161446 GCGCGCAAAAATCTGGTTTG 59.839 50.000 29.10 0.00 38.69 2.93
816 842 3.873910 TGTTTAGAGCATCCCTAACAGC 58.126 45.455 0.00 0.00 33.66 4.40
822 848 3.445096 GTGCAATTGTTTAGAGCATCCCT 59.555 43.478 7.40 0.00 37.56 4.20
824 850 4.418392 CTGTGCAATTGTTTAGAGCATCC 58.582 43.478 7.40 0.00 37.56 3.51
852 878 5.644206 TGTTGCGTTTTATATGGCTGAGTTA 59.356 36.000 0.00 0.00 0.00 2.24
871 902 0.168128 GCATTAGGTGACGGTGTTGC 59.832 55.000 0.00 0.00 0.00 4.17
896 927 5.235850 ACAAATGTATGTCTGTGGGTGTA 57.764 39.130 0.00 0.00 0.00 2.90
897 928 4.098914 ACAAATGTATGTCTGTGGGTGT 57.901 40.909 0.00 0.00 0.00 4.16
1011 1049 1.376553 GCCGCTGCTCTTCTTCCTT 60.377 57.895 0.00 0.00 33.53 3.36
1269 1307 3.413327 GAGCTCCATGACGAGGTAGATA 58.587 50.000 0.87 0.00 40.60 1.98
1299 1337 2.266055 CTGGACTGAAGGTCGCCC 59.734 66.667 0.00 0.00 45.35 6.13
1665 1703 4.021229 ACATATCGGGGATATTAGCGTCA 58.979 43.478 0.00 0.00 33.52 4.35
2199 2240 2.029290 GCTAAACACTCGAACCTCTCCA 60.029 50.000 0.00 0.00 0.00 3.86
2244 2291 1.137697 CCCTAACTACACCATCCCCC 58.862 60.000 0.00 0.00 0.00 5.40
2275 2322 3.354089 AACTTGTTGCAAATCCTCACG 57.646 42.857 0.00 0.00 0.00 4.35
2423 2494 3.550561 CGCTGCTACATTTCGTCAAAAA 58.449 40.909 0.00 0.00 0.00 1.94
2424 2495 2.664424 GCGCTGCTACATTTCGTCAAAA 60.664 45.455 0.00 0.00 0.00 2.44
2425 2496 1.136085 GCGCTGCTACATTTCGTCAAA 60.136 47.619 0.00 0.00 0.00 2.69
2426 2497 0.442310 GCGCTGCTACATTTCGTCAA 59.558 50.000 0.00 0.00 0.00 3.18
2428 2499 1.556564 TAGCGCTGCTACATTTCGTC 58.443 50.000 22.90 0.00 40.44 4.20
2429 2500 3.733236 TAGCGCTGCTACATTTCGT 57.267 47.368 22.90 0.00 40.44 3.85
2437 2508 3.245518 TGAATGAAAGTAGCGCTGCTA 57.754 42.857 28.57 13.78 40.44 3.49
2438 2509 2.099141 TGAATGAAAGTAGCGCTGCT 57.901 45.000 23.18 23.18 43.41 4.24
2439 2510 3.411415 AATGAATGAAAGTAGCGCTGC 57.589 42.857 22.90 20.66 0.00 5.25
2440 2511 6.349973 TCTTAATGAATGAAAGTAGCGCTG 57.650 37.500 22.90 0.00 0.00 5.18
2441 2512 6.818644 TCTTCTTAATGAATGAAAGTAGCGCT 59.181 34.615 17.26 17.26 33.71 5.92
2442 2513 7.005062 TCTTCTTAATGAATGAAAGTAGCGC 57.995 36.000 0.00 0.00 33.71 5.92
2443 2514 7.492669 TCCTCTTCTTAATGAATGAAAGTAGCG 59.507 37.037 0.00 0.00 33.71 4.26
2444 2515 8.723942 TCCTCTTCTTAATGAATGAAAGTAGC 57.276 34.615 0.00 0.00 33.71 3.58
2445 2516 8.825745 GCTCCTCTTCTTAATGAATGAAAGTAG 58.174 37.037 0.00 0.00 33.71 2.57
2446 2517 7.770897 GGCTCCTCTTCTTAATGAATGAAAGTA 59.229 37.037 0.00 0.00 33.71 2.24
2447 2518 6.601217 GGCTCCTCTTCTTAATGAATGAAAGT 59.399 38.462 0.00 0.00 33.71 2.66
2448 2519 6.238320 CGGCTCCTCTTCTTAATGAATGAAAG 60.238 42.308 0.00 0.00 33.71 2.62
2449 2520 5.586243 CGGCTCCTCTTCTTAATGAATGAAA 59.414 40.000 0.00 0.00 33.71 2.69
2450 2521 5.118990 CGGCTCCTCTTCTTAATGAATGAA 58.881 41.667 0.00 0.00 33.71 2.57
2451 2522 4.443457 CCGGCTCCTCTTCTTAATGAATGA 60.443 45.833 0.00 0.00 33.71 2.57
2452 2523 3.812053 CCGGCTCCTCTTCTTAATGAATG 59.188 47.826 0.00 0.00 33.71 2.67
2453 2524 3.745797 GCCGGCTCCTCTTCTTAATGAAT 60.746 47.826 22.15 0.00 33.71 2.57
2454 2525 2.420129 GCCGGCTCCTCTTCTTAATGAA 60.420 50.000 22.15 0.00 0.00 2.57
2455 2526 1.139058 GCCGGCTCCTCTTCTTAATGA 59.861 52.381 22.15 0.00 0.00 2.57
2456 2527 1.134401 TGCCGGCTCCTCTTCTTAATG 60.134 52.381 29.70 0.00 0.00 1.90
2457 2528 1.139853 CTGCCGGCTCCTCTTCTTAAT 59.860 52.381 29.70 0.00 0.00 1.40
2458 2529 0.537188 CTGCCGGCTCCTCTTCTTAA 59.463 55.000 29.70 0.41 0.00 1.85
2459 2530 0.324368 TCTGCCGGCTCCTCTTCTTA 60.324 55.000 29.70 1.03 0.00 2.10
2460 2531 1.610673 TCTGCCGGCTCCTCTTCTT 60.611 57.895 29.70 0.00 0.00 2.52
2461 2532 2.038007 TCTGCCGGCTCCTCTTCT 59.962 61.111 29.70 0.00 0.00 2.85
2462 2533 2.498726 CTCTGCCGGCTCCTCTTC 59.501 66.667 29.70 0.00 0.00 2.87
2463 2534 3.780173 GCTCTGCCGGCTCCTCTT 61.780 66.667 29.70 0.00 0.00 2.85
2473 2544 1.398390 CTGTAATTTCACGGCTCTGCC 59.602 52.381 0.00 0.00 46.75 4.85
2474 2545 1.398390 CCTGTAATTTCACGGCTCTGC 59.602 52.381 0.00 0.00 0.00 4.26
2475 2546 2.009774 CCCTGTAATTTCACGGCTCTG 58.990 52.381 0.00 0.00 0.00 3.35
2476 2547 1.065418 CCCCTGTAATTTCACGGCTCT 60.065 52.381 0.00 0.00 0.00 4.09
2477 2548 1.065709 TCCCCTGTAATTTCACGGCTC 60.066 52.381 0.00 0.00 0.00 4.70
2478 2549 0.988832 TCCCCTGTAATTTCACGGCT 59.011 50.000 0.00 0.00 0.00 5.52
2479 2550 1.828979 TTCCCCTGTAATTTCACGGC 58.171 50.000 0.00 0.00 0.00 5.68
2480 2551 2.099098 GCATTCCCCTGTAATTTCACGG 59.901 50.000 0.00 0.00 0.00 4.94
2481 2552 2.752354 TGCATTCCCCTGTAATTTCACG 59.248 45.455 0.00 0.00 0.00 4.35
2482 2553 4.799564 TTGCATTCCCCTGTAATTTCAC 57.200 40.909 0.00 0.00 0.00 3.18
2483 2554 5.815233 TTTTGCATTCCCCTGTAATTTCA 57.185 34.783 0.00 0.00 0.00 2.69
2484 2555 6.878389 TCATTTTTGCATTCCCCTGTAATTTC 59.122 34.615 0.00 0.00 0.00 2.17
2485 2556 6.777782 TCATTTTTGCATTCCCCTGTAATTT 58.222 32.000 0.00 0.00 0.00 1.82
2486 2557 6.213195 TCTCATTTTTGCATTCCCCTGTAATT 59.787 34.615 0.00 0.00 0.00 1.40
2487 2558 5.721000 TCTCATTTTTGCATTCCCCTGTAAT 59.279 36.000 0.00 0.00 0.00 1.89
2488 2559 5.083122 TCTCATTTTTGCATTCCCCTGTAA 58.917 37.500 0.00 0.00 0.00 2.41
2489 2560 4.671831 TCTCATTTTTGCATTCCCCTGTA 58.328 39.130 0.00 0.00 0.00 2.74
2490 2561 3.509442 TCTCATTTTTGCATTCCCCTGT 58.491 40.909 0.00 0.00 0.00 4.00
2491 2562 3.118884 CCTCTCATTTTTGCATTCCCCTG 60.119 47.826 0.00 0.00 0.00 4.45
2492 2563 3.102204 CCTCTCATTTTTGCATTCCCCT 58.898 45.455 0.00 0.00 0.00 4.79
2493 2564 2.419159 GCCTCTCATTTTTGCATTCCCC 60.419 50.000 0.00 0.00 0.00 4.81
2494 2565 2.234414 TGCCTCTCATTTTTGCATTCCC 59.766 45.455 0.00 0.00 0.00 3.97
2495 2566 3.598019 TGCCTCTCATTTTTGCATTCC 57.402 42.857 0.00 0.00 0.00 3.01
2496 2567 7.781548 AATATTGCCTCTCATTTTTGCATTC 57.218 32.000 0.00 0.00 0.00 2.67
2497 2568 8.259411 TGTAATATTGCCTCTCATTTTTGCATT 58.741 29.630 0.00 0.00 0.00 3.56
2498 2569 7.707893 GTGTAATATTGCCTCTCATTTTTGCAT 59.292 33.333 0.00 0.00 0.00 3.96
2499 2570 7.035004 GTGTAATATTGCCTCTCATTTTTGCA 58.965 34.615 0.00 0.00 0.00 4.08
2500 2571 6.476706 GGTGTAATATTGCCTCTCATTTTTGC 59.523 38.462 0.00 0.00 0.00 3.68
2501 2572 7.489113 GTGGTGTAATATTGCCTCTCATTTTTG 59.511 37.037 0.00 0.00 0.00 2.44
2502 2573 7.397192 AGTGGTGTAATATTGCCTCTCATTTTT 59.603 33.333 0.00 0.00 0.00 1.94
2503 2574 6.891908 AGTGGTGTAATATTGCCTCTCATTTT 59.108 34.615 0.00 0.00 0.00 1.82
2504 2575 6.319658 CAGTGGTGTAATATTGCCTCTCATTT 59.680 38.462 0.00 0.00 0.00 2.32
2505 2576 5.824624 CAGTGGTGTAATATTGCCTCTCATT 59.175 40.000 0.00 0.00 0.00 2.57
2506 2577 5.130975 TCAGTGGTGTAATATTGCCTCTCAT 59.869 40.000 0.00 0.00 0.00 2.90
2507 2578 4.469586 TCAGTGGTGTAATATTGCCTCTCA 59.530 41.667 0.00 0.00 0.00 3.27
2508 2579 5.023533 TCAGTGGTGTAATATTGCCTCTC 57.976 43.478 0.00 0.00 0.00 3.20
2509 2580 5.186198 GTTCAGTGGTGTAATATTGCCTCT 58.814 41.667 0.00 1.92 0.00 3.69
2510 2581 4.941263 TGTTCAGTGGTGTAATATTGCCTC 59.059 41.667 0.00 0.00 0.00 4.70
2511 2582 4.700213 GTGTTCAGTGGTGTAATATTGCCT 59.300 41.667 0.00 0.00 0.00 4.75
2512 2583 4.457603 TGTGTTCAGTGGTGTAATATTGCC 59.542 41.667 0.00 0.00 0.00 4.52
2513 2584 5.621197 TGTGTTCAGTGGTGTAATATTGC 57.379 39.130 0.00 0.00 0.00 3.56
2514 2585 6.964908 TGTTGTGTTCAGTGGTGTAATATTG 58.035 36.000 0.00 0.00 0.00 1.90
2515 2586 7.575414 TTGTTGTGTTCAGTGGTGTAATATT 57.425 32.000 0.00 0.00 0.00 1.28
2516 2587 7.575414 TTTGTTGTGTTCAGTGGTGTAATAT 57.425 32.000 0.00 0.00 0.00 1.28
2517 2588 7.392494 TTTTGTTGTGTTCAGTGGTGTAATA 57.608 32.000 0.00 0.00 0.00 0.98
2518 2589 5.906113 TTTGTTGTGTTCAGTGGTGTAAT 57.094 34.783 0.00 0.00 0.00 1.89
2519 2590 5.707242 TTTTGTTGTGTTCAGTGGTGTAA 57.293 34.783 0.00 0.00 0.00 2.41
2520 2591 5.707242 TTTTTGTTGTGTTCAGTGGTGTA 57.293 34.783 0.00 0.00 0.00 2.90
2521 2592 4.592485 TTTTTGTTGTGTTCAGTGGTGT 57.408 36.364 0.00 0.00 0.00 4.16
2539 2610 9.108284 CTGTTCTCTTCTTCTCTCTTTCTTTTT 57.892 33.333 0.00 0.00 0.00 1.94
2540 2611 7.226523 GCTGTTCTCTTCTTCTCTCTTTCTTTT 59.773 37.037 0.00 0.00 0.00 2.27
2541 2612 6.705825 GCTGTTCTCTTCTTCTCTCTTTCTTT 59.294 38.462 0.00 0.00 0.00 2.52
2542 2613 6.041979 AGCTGTTCTCTTCTTCTCTCTTTCTT 59.958 38.462 0.00 0.00 0.00 2.52
2543 2614 5.539955 AGCTGTTCTCTTCTTCTCTCTTTCT 59.460 40.000 0.00 0.00 0.00 2.52
2544 2615 5.634859 CAGCTGTTCTCTTCTTCTCTCTTTC 59.365 44.000 5.25 0.00 0.00 2.62
2545 2616 5.511202 CCAGCTGTTCTCTTCTTCTCTCTTT 60.511 44.000 13.81 0.00 0.00 2.52
2546 2617 4.021192 CCAGCTGTTCTCTTCTTCTCTCTT 60.021 45.833 13.81 0.00 0.00 2.85
2547 2618 3.511146 CCAGCTGTTCTCTTCTTCTCTCT 59.489 47.826 13.81 0.00 0.00 3.10
2548 2619 3.368323 CCCAGCTGTTCTCTTCTTCTCTC 60.368 52.174 13.81 0.00 0.00 3.20
2549 2620 2.566724 CCCAGCTGTTCTCTTCTTCTCT 59.433 50.000 13.81 0.00 0.00 3.10
2550 2621 2.301583 ACCCAGCTGTTCTCTTCTTCTC 59.698 50.000 13.81 0.00 0.00 2.87
2551 2622 2.301583 GACCCAGCTGTTCTCTTCTTCT 59.698 50.000 13.81 0.00 0.00 2.85
2552 2623 2.694213 GACCCAGCTGTTCTCTTCTTC 58.306 52.381 13.81 0.00 0.00 2.87
2553 2624 1.001406 CGACCCAGCTGTTCTCTTCTT 59.999 52.381 13.81 0.00 0.00 2.52
2554 2625 0.605589 CGACCCAGCTGTTCTCTTCT 59.394 55.000 13.81 0.00 0.00 2.85
2555 2626 0.603569 TCGACCCAGCTGTTCTCTTC 59.396 55.000 13.81 0.00 0.00 2.87
2556 2627 0.605589 CTCGACCCAGCTGTTCTCTT 59.394 55.000 13.81 0.00 0.00 2.85
2557 2628 1.254284 CCTCGACCCAGCTGTTCTCT 61.254 60.000 13.81 0.00 0.00 3.10
2558 2629 1.216710 CCTCGACCCAGCTGTTCTC 59.783 63.158 13.81 2.78 0.00 2.87
2559 2630 2.948720 GCCTCGACCCAGCTGTTCT 61.949 63.158 13.81 0.00 0.00 3.01
2560 2631 2.435059 GCCTCGACCCAGCTGTTC 60.435 66.667 13.81 7.72 0.00 3.18
2561 2632 4.379243 CGCCTCGACCCAGCTGTT 62.379 66.667 13.81 0.00 0.00 3.16
2571 2642 2.434185 GCCATGTTGTCGCCTCGA 60.434 61.111 0.00 0.00 0.00 4.04
2572 2643 1.851021 TTTGCCATGTTGTCGCCTCG 61.851 55.000 0.00 0.00 0.00 4.63
2573 2644 0.527565 ATTTGCCATGTTGTCGCCTC 59.472 50.000 0.00 0.00 0.00 4.70
2574 2645 0.244450 CATTTGCCATGTTGTCGCCT 59.756 50.000 0.00 0.00 0.00 5.52
2575 2646 1.353609 GCATTTGCCATGTTGTCGCC 61.354 55.000 0.00 0.00 34.31 5.54
2576 2647 2.072490 GCATTTGCCATGTTGTCGC 58.928 52.632 0.00 0.00 34.31 5.19
2587 2658 3.807071 TCCTTTTTCTTTTCGGCATTTGC 59.193 39.130 0.00 0.00 41.14 3.68
2588 2659 4.211164 GGTCCTTTTTCTTTTCGGCATTTG 59.789 41.667 0.00 0.00 0.00 2.32
2589 2660 4.141824 TGGTCCTTTTTCTTTTCGGCATTT 60.142 37.500 0.00 0.00 0.00 2.32
2590 2661 3.386402 TGGTCCTTTTTCTTTTCGGCATT 59.614 39.130 0.00 0.00 0.00 3.56
2591 2662 2.962421 TGGTCCTTTTTCTTTTCGGCAT 59.038 40.909 0.00 0.00 0.00 4.40
2592 2663 2.379972 TGGTCCTTTTTCTTTTCGGCA 58.620 42.857 0.00 0.00 0.00 5.69
2593 2664 3.446310 TTGGTCCTTTTTCTTTTCGGC 57.554 42.857 0.00 0.00 0.00 5.54
2594 2665 4.803613 CACTTTGGTCCTTTTTCTTTTCGG 59.196 41.667 0.00 0.00 0.00 4.30
2595 2666 4.267690 GCACTTTGGTCCTTTTTCTTTTCG 59.732 41.667 0.00 0.00 0.00 3.46
2596 2667 4.570772 GGCACTTTGGTCCTTTTTCTTTTC 59.429 41.667 0.00 0.00 0.00 2.29
2597 2668 4.019771 TGGCACTTTGGTCCTTTTTCTTTT 60.020 37.500 0.00 0.00 0.00 2.27
2598 2669 3.517500 TGGCACTTTGGTCCTTTTTCTTT 59.482 39.130 0.00 0.00 0.00 2.52
2599 2670 3.103742 TGGCACTTTGGTCCTTTTTCTT 58.896 40.909 0.00 0.00 0.00 2.52
2600 2671 2.745968 TGGCACTTTGGTCCTTTTTCT 58.254 42.857 0.00 0.00 0.00 2.52
2601 2672 3.069443 TGATGGCACTTTGGTCCTTTTTC 59.931 43.478 0.00 0.00 0.00 2.29
2602 2673 3.037549 TGATGGCACTTTGGTCCTTTTT 58.962 40.909 0.00 0.00 0.00 1.94
2603 2674 2.676748 TGATGGCACTTTGGTCCTTTT 58.323 42.857 0.00 0.00 0.00 2.27
2604 2675 2.380064 TGATGGCACTTTGGTCCTTT 57.620 45.000 0.00 0.00 0.00 3.11
2605 2676 2.042162 AGATGATGGCACTTTGGTCCTT 59.958 45.455 0.00 0.00 0.00 3.36
2606 2677 1.637553 AGATGATGGCACTTTGGTCCT 59.362 47.619 0.00 0.00 0.00 3.85
2607 2678 2.134789 AGATGATGGCACTTTGGTCC 57.865 50.000 0.00 0.00 0.00 4.46
2608 2679 2.424956 GGAAGATGATGGCACTTTGGTC 59.575 50.000 0.00 0.00 0.00 4.02
2609 2680 2.225091 TGGAAGATGATGGCACTTTGGT 60.225 45.455 0.00 0.00 0.00 3.67
2610 2681 2.449464 TGGAAGATGATGGCACTTTGG 58.551 47.619 0.00 0.00 0.00 3.28
2611 2682 4.081862 ACAATGGAAGATGATGGCACTTTG 60.082 41.667 0.00 0.00 0.00 2.77
2612 2683 4.091549 ACAATGGAAGATGATGGCACTTT 58.908 39.130 0.00 0.00 0.00 2.66
2613 2684 3.705051 ACAATGGAAGATGATGGCACTT 58.295 40.909 0.00 0.00 0.00 3.16
2614 2685 3.377253 ACAATGGAAGATGATGGCACT 57.623 42.857 0.00 0.00 0.00 4.40
2615 2686 3.698040 AGAACAATGGAAGATGATGGCAC 59.302 43.478 0.00 0.00 0.00 5.01
2616 2687 3.949754 GAGAACAATGGAAGATGATGGCA 59.050 43.478 0.00 0.00 0.00 4.92
2617 2688 3.949754 TGAGAACAATGGAAGATGATGGC 59.050 43.478 0.00 0.00 0.00 4.40
2618 2689 4.337555 GGTGAGAACAATGGAAGATGATGG 59.662 45.833 0.00 0.00 0.00 3.51
2619 2690 4.945543 TGGTGAGAACAATGGAAGATGATG 59.054 41.667 0.00 0.00 0.00 3.07
2620 2691 5.183530 TGGTGAGAACAATGGAAGATGAT 57.816 39.130 0.00 0.00 0.00 2.45
2621 2692 4.639078 TGGTGAGAACAATGGAAGATGA 57.361 40.909 0.00 0.00 0.00 2.92
2622 2693 5.909621 ATTGGTGAGAACAATGGAAGATG 57.090 39.130 0.00 0.00 37.18 2.90
2637 2708 1.866483 ATGCAGCCCCTCATTGGTGA 61.866 55.000 0.00 0.00 31.81 4.02
2638 2709 1.380785 ATGCAGCCCCTCATTGGTG 60.381 57.895 0.00 0.00 0.00 4.17
2639 2710 1.380785 CATGCAGCCCCTCATTGGT 60.381 57.895 0.00 0.00 0.00 3.67
2640 2711 1.076559 TCATGCAGCCCCTCATTGG 60.077 57.895 0.00 0.00 0.00 3.16
2641 2712 1.107538 CCTCATGCAGCCCCTCATTG 61.108 60.000 0.00 0.00 0.00 2.82
2642 2713 1.229359 CCTCATGCAGCCCCTCATT 59.771 57.895 0.00 0.00 0.00 2.57
2643 2714 1.284111 TTCCTCATGCAGCCCCTCAT 61.284 55.000 0.00 0.00 0.00 2.90
2644 2715 1.924939 TTCCTCATGCAGCCCCTCA 60.925 57.895 0.00 0.00 0.00 3.86
2645 2716 1.452833 GTTCCTCATGCAGCCCCTC 60.453 63.158 0.00 0.00 0.00 4.30
2646 2717 2.233566 TGTTCCTCATGCAGCCCCT 61.234 57.895 0.00 0.00 0.00 4.79
2647 2718 2.048603 GTGTTCCTCATGCAGCCCC 61.049 63.158 0.00 0.00 0.00 5.80
2648 2719 2.048603 GGTGTTCCTCATGCAGCCC 61.049 63.158 0.00 0.00 0.00 5.19
2649 2720 1.303561 TGGTGTTCCTCATGCAGCC 60.304 57.895 0.00 0.00 34.23 4.85
2650 2721 1.589716 GGTGGTGTTCCTCATGCAGC 61.590 60.000 0.00 0.00 34.23 5.25
2651 2722 0.250858 TGGTGGTGTTCCTCATGCAG 60.251 55.000 0.00 0.00 34.23 4.41
2652 2723 0.537143 GTGGTGGTGTTCCTCATGCA 60.537 55.000 0.00 0.00 34.23 3.96
2653 2724 1.244019 GGTGGTGGTGTTCCTCATGC 61.244 60.000 0.00 0.00 34.23 4.06
2654 2725 0.955428 CGGTGGTGGTGTTCCTCATG 60.955 60.000 0.00 0.00 34.23 3.07
2655 2726 1.374947 CGGTGGTGGTGTTCCTCAT 59.625 57.895 0.00 0.00 34.23 2.90
2656 2727 2.825982 CGGTGGTGGTGTTCCTCA 59.174 61.111 0.00 0.00 34.23 3.86
2657 2728 2.668550 GCGGTGGTGGTGTTCCTC 60.669 66.667 0.00 0.00 34.23 3.71
2658 2729 3.476031 CTGCGGTGGTGGTGTTCCT 62.476 63.158 0.00 0.00 34.23 3.36
2659 2730 2.978010 CTGCGGTGGTGGTGTTCC 60.978 66.667 0.00 0.00 0.00 3.62
2660 2731 2.110213 TCTGCGGTGGTGGTGTTC 59.890 61.111 0.00 0.00 0.00 3.18
2661 2732 2.203153 GTCTGCGGTGGTGGTGTT 60.203 61.111 0.00 0.00 0.00 3.32
2662 2733 4.602259 CGTCTGCGGTGGTGGTGT 62.602 66.667 0.00 0.00 0.00 4.16
2663 2734 3.800685 TTCGTCTGCGGTGGTGGTG 62.801 63.158 0.00 0.00 38.89 4.17
2664 2735 3.515316 CTTCGTCTGCGGTGGTGGT 62.515 63.158 0.00 0.00 38.89 4.16
2665 2736 2.738521 CTTCGTCTGCGGTGGTGG 60.739 66.667 0.00 0.00 38.89 4.61
2666 2737 1.734477 CTCTTCGTCTGCGGTGGTG 60.734 63.158 0.00 0.00 38.89 4.17
2667 2738 2.651361 CTCTTCGTCTGCGGTGGT 59.349 61.111 0.00 0.00 38.89 4.16
2668 2739 2.811317 GCTCTTCGTCTGCGGTGG 60.811 66.667 0.00 0.00 38.89 4.61
2669 2740 1.803519 GAGCTCTTCGTCTGCGGTG 60.804 63.158 6.43 0.00 38.89 4.94
2670 2741 2.569134 GAGCTCTTCGTCTGCGGT 59.431 61.111 6.43 0.00 38.89 5.68
2671 2742 2.202676 GGAGCTCTTCGTCTGCGG 60.203 66.667 14.64 0.00 38.89 5.69
2672 2743 2.202676 GGGAGCTCTTCGTCTGCG 60.203 66.667 14.64 0.00 39.92 5.18
2673 2744 0.529555 GATGGGAGCTCTTCGTCTGC 60.530 60.000 14.64 0.00 0.00 4.26
2674 2745 0.820226 TGATGGGAGCTCTTCGTCTG 59.180 55.000 14.64 0.00 0.00 3.51
2675 2746 1.205893 GTTGATGGGAGCTCTTCGTCT 59.794 52.381 14.64 0.00 0.00 4.18
2676 2747 1.646189 GTTGATGGGAGCTCTTCGTC 58.354 55.000 14.64 16.25 0.00 4.20
2677 2748 0.250513 GGTTGATGGGAGCTCTTCGT 59.749 55.000 14.64 7.82 0.00 3.85
2678 2749 0.807667 CGGTTGATGGGAGCTCTTCG 60.808 60.000 14.64 2.90 0.00 3.79
2679 2750 0.537188 TCGGTTGATGGGAGCTCTTC 59.463 55.000 14.64 9.07 0.00 2.87
2680 2751 0.539051 CTCGGTTGATGGGAGCTCTT 59.461 55.000 14.64 0.00 0.00 2.85
2681 2752 0.324738 TCTCGGTTGATGGGAGCTCT 60.325 55.000 14.64 0.00 0.00 4.09
2682 2753 0.179097 GTCTCGGTTGATGGGAGCTC 60.179 60.000 4.71 4.71 0.00 4.09
2683 2754 1.617947 GGTCTCGGTTGATGGGAGCT 61.618 60.000 0.00 0.00 0.00 4.09
2684 2755 1.153349 GGTCTCGGTTGATGGGAGC 60.153 63.158 0.00 0.00 0.00 4.70
2685 2756 0.833287 ATGGTCTCGGTTGATGGGAG 59.167 55.000 0.00 0.00 0.00 4.30
2686 2757 0.830648 GATGGTCTCGGTTGATGGGA 59.169 55.000 0.00 0.00 0.00 4.37
2687 2758 0.179045 GGATGGTCTCGGTTGATGGG 60.179 60.000 0.00 0.00 0.00 4.00
2688 2759 0.541392 TGGATGGTCTCGGTTGATGG 59.459 55.000 0.00 0.00 0.00 3.51
2689 2760 2.158914 TCATGGATGGTCTCGGTTGATG 60.159 50.000 0.00 0.00 0.00 3.07
2690 2761 2.118679 TCATGGATGGTCTCGGTTGAT 58.881 47.619 0.00 0.00 0.00 2.57
2691 2762 1.567357 TCATGGATGGTCTCGGTTGA 58.433 50.000 0.00 0.00 0.00 3.18
2692 2763 2.216046 CATCATGGATGGTCTCGGTTG 58.784 52.381 0.00 0.00 36.51 3.77
2693 2764 1.475751 GCATCATGGATGGTCTCGGTT 60.476 52.381 8.18 0.00 40.10 4.44
2694 2765 0.107456 GCATCATGGATGGTCTCGGT 59.893 55.000 8.18 0.00 40.10 4.69
2695 2766 0.604780 GGCATCATGGATGGTCTCGG 60.605 60.000 8.18 0.00 40.10 4.63
2696 2767 0.395686 AGGCATCATGGATGGTCTCG 59.604 55.000 8.18 0.00 40.10 4.04
2697 2768 1.419012 TGAGGCATCATGGATGGTCTC 59.581 52.381 0.00 6.02 40.10 3.36
2698 2769 1.514983 TGAGGCATCATGGATGGTCT 58.485 50.000 0.00 0.00 40.10 3.85
2699 2770 2.228059 CTTGAGGCATCATGGATGGTC 58.772 52.381 0.03 0.00 40.10 4.02
2700 2771 2.359981 CTTGAGGCATCATGGATGGT 57.640 50.000 0.03 0.00 40.10 3.55
2713 2784 1.386533 CTGCACCAATAGCCTTGAGG 58.613 55.000 0.00 0.00 38.53 3.86
2714 2785 0.737219 GCTGCACCAATAGCCTTGAG 59.263 55.000 0.00 0.00 33.89 3.02
2715 2786 2.872408 GCTGCACCAATAGCCTTGA 58.128 52.632 0.00 0.00 33.89 3.02
2720 2791 1.718757 CCTTCGGCTGCACCAATAGC 61.719 60.000 0.50 0.00 39.03 2.97
2721 2792 1.097547 CCCTTCGGCTGCACCAATAG 61.098 60.000 0.50 0.78 39.03 1.73
2722 2793 1.077787 CCCTTCGGCTGCACCAATA 60.078 57.895 0.50 0.00 39.03 1.90
2723 2794 2.361610 CCCTTCGGCTGCACCAAT 60.362 61.111 0.50 0.00 39.03 3.16
2733 2804 2.668212 TTGCTCGTTGCCCTTCGG 60.668 61.111 1.30 0.00 42.00 4.30
2734 2805 2.556287 GTTGCTCGTTGCCCTTCG 59.444 61.111 1.30 0.00 42.00 3.79
2735 2806 2.954611 GGTTGCTCGTTGCCCTTC 59.045 61.111 1.30 0.00 42.00 3.46
2736 2807 2.978010 CGGTTGCTCGTTGCCCTT 60.978 61.111 1.30 0.00 42.00 3.95
2737 2808 3.883744 CTCGGTTGCTCGTTGCCCT 62.884 63.158 1.30 0.00 42.00 5.19
2738 2809 3.423154 CTCGGTTGCTCGTTGCCC 61.423 66.667 1.30 0.00 42.00 5.36
2739 2810 2.665185 ACTCGGTTGCTCGTTGCC 60.665 61.111 1.30 0.00 42.00 4.52
2740 2811 2.668280 GGACTCGGTTGCTCGTTGC 61.668 63.158 0.00 0.00 43.25 4.17
2741 2812 1.300620 TGGACTCGGTTGCTCGTTG 60.301 57.895 0.00 0.00 0.00 4.10
2742 2813 1.300697 GTGGACTCGGTTGCTCGTT 60.301 57.895 0.00 0.00 0.00 3.85
2743 2814 2.338984 GTGGACTCGGTTGCTCGT 59.661 61.111 0.00 0.00 0.00 4.18
2744 2815 2.022129 GTGTGGACTCGGTTGCTCG 61.022 63.158 0.00 0.00 0.00 5.03
2745 2816 1.668151 GGTGTGGACTCGGTTGCTC 60.668 63.158 0.00 0.00 0.00 4.26
2746 2817 2.426023 GGTGTGGACTCGGTTGCT 59.574 61.111 0.00 0.00 0.00 3.91
2747 2818 2.668550 GGGTGTGGACTCGGTTGC 60.669 66.667 0.00 0.00 0.00 4.17
2748 2819 2.357034 CGGGTGTGGACTCGGTTG 60.357 66.667 0.00 0.00 42.81 3.77
2756 2827 3.307906 CCTTCGTCCGGGTGTGGA 61.308 66.667 0.00 0.00 35.04 4.02
2757 2828 4.388499 CCCTTCGTCCGGGTGTGG 62.388 72.222 0.00 0.00 36.91 4.17
2762 2833 4.338710 TTTGGCCCTTCGTCCGGG 62.339 66.667 0.00 0.00 44.89 5.73
2763 2834 3.053896 GTTTGGCCCTTCGTCCGG 61.054 66.667 0.00 0.00 0.00 5.14
2764 2835 3.419759 CGTTTGGCCCTTCGTCCG 61.420 66.667 0.00 0.00 0.00 4.79
2765 2836 3.733960 GCGTTTGGCCCTTCGTCC 61.734 66.667 0.00 0.00 34.80 4.79
2766 2837 2.548295 TTGCGTTTGGCCCTTCGTC 61.548 57.895 0.00 0.00 42.61 4.20
2767 2838 2.517402 TTGCGTTTGGCCCTTCGT 60.517 55.556 0.00 0.00 42.61 3.85
2768 2839 2.050442 GTTGCGTTTGGCCCTTCG 60.050 61.111 0.00 2.91 42.61 3.79
2769 2840 2.338620 GGTTGCGTTTGGCCCTTC 59.661 61.111 0.00 0.00 42.61 3.46
2770 2841 3.601685 CGGTTGCGTTTGGCCCTT 61.602 61.111 0.00 0.00 42.61 3.95
2771 2842 4.572571 TCGGTTGCGTTTGGCCCT 62.573 61.111 0.00 0.00 42.61 5.19
2772 2843 4.038080 CTCGGTTGCGTTTGGCCC 62.038 66.667 0.00 0.00 42.61 5.80
2773 2844 4.038080 CCTCGGTTGCGTTTGGCC 62.038 66.667 0.00 0.00 42.61 5.36
2774 2845 4.700365 GCCTCGGTTGCGTTTGGC 62.700 66.667 0.00 0.00 43.96 4.52
2775 2846 1.669760 TAGCCTCGGTTGCGTTTGG 60.670 57.895 0.00 0.00 0.00 3.28
2776 2847 1.225376 TGTAGCCTCGGTTGCGTTTG 61.225 55.000 0.00 0.00 0.00 2.93
2777 2848 0.533308 TTGTAGCCTCGGTTGCGTTT 60.533 50.000 0.00 0.00 0.00 3.60
2778 2849 1.070105 TTGTAGCCTCGGTTGCGTT 59.930 52.632 0.00 0.00 0.00 4.84
2779 2850 1.666872 GTTGTAGCCTCGGTTGCGT 60.667 57.895 0.00 0.00 0.00 5.24
2780 2851 1.666553 TGTTGTAGCCTCGGTTGCG 60.667 57.895 0.00 0.00 0.00 4.85
2781 2852 0.882927 TGTGTTGTAGCCTCGGTTGC 60.883 55.000 0.00 0.00 0.00 4.17
2782 2853 1.263217 GTTGTGTTGTAGCCTCGGTTG 59.737 52.381 0.00 0.00 0.00 3.77
2783 2854 1.134340 TGTTGTGTTGTAGCCTCGGTT 60.134 47.619 0.00 0.00 0.00 4.44
2784 2855 0.466543 TGTTGTGTTGTAGCCTCGGT 59.533 50.000 0.00 0.00 0.00 4.69
2785 2856 1.148310 CTGTTGTGTTGTAGCCTCGG 58.852 55.000 0.00 0.00 0.00 4.63
2786 2857 0.512952 GCTGTTGTGTTGTAGCCTCG 59.487 55.000 0.00 0.00 0.00 4.63
2787 2858 0.512952 CGCTGTTGTGTTGTAGCCTC 59.487 55.000 0.00 0.00 32.70 4.70
2788 2859 0.884704 CCGCTGTTGTGTTGTAGCCT 60.885 55.000 0.00 0.00 32.70 4.58
2789 2860 1.574428 CCGCTGTTGTGTTGTAGCC 59.426 57.895 0.00 0.00 32.70 3.93
2790 2861 1.082104 GCCGCTGTTGTGTTGTAGC 60.082 57.895 0.00 0.00 0.00 3.58
2791 2862 0.041312 GTGCCGCTGTTGTGTTGTAG 60.041 55.000 0.00 0.00 0.00 2.74
2792 2863 1.440938 GGTGCCGCTGTTGTGTTGTA 61.441 55.000 0.00 0.00 0.00 2.41
2793 2864 2.770589 GGTGCCGCTGTTGTGTTGT 61.771 57.895 0.00 0.00 0.00 3.32
2794 2865 2.026014 GGTGCCGCTGTTGTGTTG 59.974 61.111 0.00 0.00 0.00 3.33
2795 2866 3.582120 CGGTGCCGCTGTTGTGTT 61.582 61.111 0.00 0.00 0.00 3.32
2822 2893 0.393537 AGCTCTTTGATGCCCTTCGG 60.394 55.000 0.00 0.00 0.00 4.30
2823 2894 0.731417 CAGCTCTTTGATGCCCTTCG 59.269 55.000 0.00 0.00 0.00 3.79
2824 2895 2.015587 CTCAGCTCTTTGATGCCCTTC 58.984 52.381 0.00 0.00 31.07 3.46
2825 2896 1.353694 ACTCAGCTCTTTGATGCCCTT 59.646 47.619 0.00 0.00 31.07 3.95
2826 2897 0.990374 ACTCAGCTCTTTGATGCCCT 59.010 50.000 0.00 0.00 31.07 5.19
2827 2898 1.377536 GACTCAGCTCTTTGATGCCC 58.622 55.000 0.00 0.00 31.07 5.36
2828 2899 1.339438 TGGACTCAGCTCTTTGATGCC 60.339 52.381 0.00 0.00 31.07 4.40
2829 2900 2.105006 TGGACTCAGCTCTTTGATGC 57.895 50.000 0.00 0.00 31.07 3.91
2830 2901 4.259356 TCAATGGACTCAGCTCTTTGATG 58.741 43.478 0.00 0.00 0.00 3.07
2831 2902 4.019501 ACTCAATGGACTCAGCTCTTTGAT 60.020 41.667 0.00 0.00 0.00 2.57
2832 2903 3.326006 ACTCAATGGACTCAGCTCTTTGA 59.674 43.478 0.00 0.00 0.00 2.69
2833 2904 3.672808 ACTCAATGGACTCAGCTCTTTG 58.327 45.455 0.00 0.00 0.00 2.77
2834 2905 5.012561 ACTTACTCAATGGACTCAGCTCTTT 59.987 40.000 0.00 0.00 0.00 2.52
2835 2906 4.530161 ACTTACTCAATGGACTCAGCTCTT 59.470 41.667 0.00 0.00 0.00 2.85
2836 2907 4.093011 ACTTACTCAATGGACTCAGCTCT 58.907 43.478 0.00 0.00 0.00 4.09
2837 2908 4.464069 ACTTACTCAATGGACTCAGCTC 57.536 45.455 0.00 0.00 0.00 4.09
2838 2909 6.607600 TGTATACTTACTCAATGGACTCAGCT 59.392 38.462 4.17 0.00 0.00 4.24
2839 2910 6.697892 GTGTATACTTACTCAATGGACTCAGC 59.302 42.308 4.17 0.00 0.00 4.26
2840 2911 7.068839 AGGTGTATACTTACTCAATGGACTCAG 59.931 40.741 4.17 0.00 0.00 3.35
2841 2912 6.895756 AGGTGTATACTTACTCAATGGACTCA 59.104 38.462 4.17 0.00 0.00 3.41
2842 2913 7.349412 AGGTGTATACTTACTCAATGGACTC 57.651 40.000 4.17 0.00 0.00 3.36
2843 2914 7.735326 AAGGTGTATACTTACTCAATGGACT 57.265 36.000 4.17 0.00 0.00 3.85
2844 2915 8.788325 AAAAGGTGTATACTTACTCAATGGAC 57.212 34.615 4.17 0.00 0.00 4.02
2845 2916 9.226606 CAAAAAGGTGTATACTTACTCAATGGA 57.773 33.333 4.17 0.00 0.00 3.41
2846 2917 8.458843 CCAAAAAGGTGTATACTTACTCAATGG 58.541 37.037 4.17 1.13 0.00 3.16
2847 2918 8.458843 CCCAAAAAGGTGTATACTTACTCAATG 58.541 37.037 4.17 0.00 34.66 2.82
2848 2919 7.122204 GCCCAAAAAGGTGTATACTTACTCAAT 59.878 37.037 4.17 0.00 34.66 2.57
2849 2920 6.431852 GCCCAAAAAGGTGTATACTTACTCAA 59.568 38.462 4.17 0.00 34.66 3.02
2850 2921 5.941647 GCCCAAAAAGGTGTATACTTACTCA 59.058 40.000 4.17 0.00 34.66 3.41
2851 2922 5.941647 TGCCCAAAAAGGTGTATACTTACTC 59.058 40.000 4.17 0.00 34.66 2.59
2852 2923 5.883180 TGCCCAAAAAGGTGTATACTTACT 58.117 37.500 4.17 0.00 34.66 2.24
2853 2924 6.016108 TGTTGCCCAAAAAGGTGTATACTTAC 60.016 38.462 4.17 0.00 34.66 2.34
2854 2925 6.069331 TGTTGCCCAAAAAGGTGTATACTTA 58.931 36.000 4.17 0.00 34.66 2.24
2855 2926 4.896482 TGTTGCCCAAAAAGGTGTATACTT 59.104 37.500 4.17 0.00 34.66 2.24
2856 2927 4.475345 TGTTGCCCAAAAAGGTGTATACT 58.525 39.130 4.17 0.00 34.66 2.12
2857 2928 4.857509 TGTTGCCCAAAAAGGTGTATAC 57.142 40.909 0.00 0.00 34.66 1.47
2894 2965 7.989826 TCGTAGGTCCTACAATCTTTACTTAC 58.010 38.462 25.49 0.00 36.83 2.34
2906 2977 7.099120 GGTTTCTTAATTTCGTAGGTCCTACA 58.901 38.462 25.49 12.16 36.83 2.74
2931 3002 3.995048 GGAGGGAGTAGAACTTTGTTTCG 59.005 47.826 0.00 0.00 0.00 3.46
2937 3008 4.175962 TGGAATGGAGGGAGTAGAACTTT 58.824 43.478 0.00 0.00 0.00 2.66
2954 3025 7.828717 ACAAACCTTGAACTTGAATTTTGGAAT 59.171 29.630 0.00 0.00 0.00 3.01
3040 3114 7.800767 TGAATCTAATGAAGCTAATTCGATGC 58.199 34.615 8.83 8.02 41.14 3.91
3196 3773 4.461431 TCACTTTATCCGTTGTAGAGCTGA 59.539 41.667 0.00 0.00 0.00 4.26
3261 3838 8.398665 GCGTGTTTCTCTCCTCATATTAAAATT 58.601 33.333 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.